Psyllid ID: psy9673

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRFFLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLPIINK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHcccccccccccccEEEHHHccccccccccccccccccccEEEEEccccccEEEccEEEEEccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccccEHHccccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccEEEEEEEccccccEEEEcccccEEEccEEEEccccHHccccccEEEEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
mdewtlndllecsvcldrldtsskvlpcqhtfCKKCLEEIVSShkelrcpecrvlveckvdelppnVLLMRILEGLFPLVVSFIRFFLNIldlnfkkddIVILRRKIdnnwfygevngttgafpmsyvqidnnwfygevngttgafpmSYVQFVWYLPIINK
Flexible Loop (DISEMBL)
mdewtlndLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRFFLNILDLNFKKDDIVILRRKidnnwfygeVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLPIINK
Low Complexity Region (SEG)
MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRFFLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLPIINK
Disordered region (IsUnstruct)
***WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRFFLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLPII**
Disordered Region (DISOPRED)
***WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLF*************************LRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLPII**
Disordered Region (DISEMBL)
MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRFFLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLPIINK
Disordered Region (DISPRO)
**EWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRFFLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLPIINK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRFFLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLPIINK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q8BZT2	735	Putative E3 ubiquitin-pro	yes	N/A	0.734	0.161	0.389	2e-31
Q8C120	878	SH3 domain-containing RIN	no	N/A	0.203	0.037	0.723	2e-30
Q8TEJ3	882	SH3 domain-containing RIN	yes	N/A	0.203	0.037	0.723	2e-30
Q6NRD3	826	E3 ubiquitin-protein liga	N/A	N/A	0.203	0.039	0.75	2e-30
Q28E95	861	E3 ubiquitin-protein liga	no	N/A	0.203	0.038	0.736	9e-30
A5D8S5	867	E3 ubiquitin-protein liga	yes	N/A	0.203	0.038	0.684	3e-27
Q71F54	894	E3 ubiquitin-protein liga	no	N/A	0.203	0.036	0.697	4e-27
Q69ZI1	892	E3 ubiquitin-protein liga	no	N/A	0.203	0.036	0.697	4e-27
Q5RBR0	888	E3 ubiquitin-protein liga	no	N/A	0.203	0.037	0.684	1e-26
Q7Z6J0	888	E3 ubiquitin-protein liga	no	N/A	0.203	0.037	0.684	1e-26

>sp|Q8BZT2|SH3R2_MOUSE Putative E3 ubiquitin-protein ligase SH3RF2 OS=Mus musculus GN=Sh3rf2 PE=1 SV=2

 Score =  135 bits (339), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/172 (38%), Positives = 92/172 (53%), Gaps = 53/172 (30%)

Query: 11  ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLM 70
           EC VC ++LD ++KVLPCQHTFCK CL+ I  +HKELRCPECR LV C ++ LP N+LL+
Sbjct: 11  ECPVCFEKLDVTAKVLPCQHTFCKPCLQRIFKAHKELRCPECRTLVFCSIEALPANLLLV 70

Query: 71  RILEGL-------------------------------------FPLVVSFIRFFL----- 88
           R+L+G+                                     F LV S +R  +     
Sbjct: 71  RLLDGVRSGQSSWKGGSFRRPRILTLQDNRKAKSSPRSLQASPFRLVPS-VRIHMDGVPR 129

Query: 89  ----------NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
                     N  DL F K D+++LRR++D NW+ GE+NG +G FP S V++
Sbjct: 130 AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 181

Inhibits PPP1CA phosphatase activity. May be a E3 ubiquitin-protein ligase (Potential). May play a role in cardiac function.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein 3 OS=Mus musculus GN=Sh3rf3 PE=2 SV=2

 Score =  131 bits (330), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/76 (72%), Positives = 67/76 (88%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
           MDE +L DLLECSVCL+RLDT++KVLPCQHTFC++CLE IV S  ELRCPECR+LV C V
Sbjct: 41  MDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRILVGCGV 100

Query: 61  DELPPNVLLMRILEGL 76
           DELP N+LL+R+L+G+
Sbjct: 101 DELPANILLVRLLDGI 116

Mus musculus (taxid: 10090)

>sp|Q8TEJ3|SH3R3_HUMAN SH3 domain-containing RING finger protein 3 OS=Homo sapiens GN=SH3RF3 PE=1 SV=2

 Score =  131 bits (330), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/76 (72%), Positives = 67/76 (88%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
           MDE +L DLLECSVCL+RLDT++KVLPCQHTFC++CLE IV S  ELRCPECR+LV C V
Sbjct: 46  MDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRILVGCGV 105

Query: 61  DELPPNVLLMRILEGL 76
           DELP N+LL+R+L+G+
Sbjct: 106 DELPANILLVRLLDGI 121

Homo sapiens (taxid: 9606)

>sp|Q6NRD3|SH3R1_XENLA E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus laevis GN=sh3rf1 PE=2 SV=1

 Score =  131 bits (329), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/76 (75%), Positives = 65/76 (85%)

Query: 1  MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
          MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IVSS KELRCPECR LVEC V
Sbjct: 1  MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVSSRKELRCPECRTLVECGV 60

Query: 61 DELPPNVLLMRILEGL 76
          DELP N+LL+R+L+G+
Sbjct: 61 DELPSNILLVRLLDGI 76

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as ube2d1 or ube2n and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis GN=sh3rf1 PE=2 SV=1

 Score =  129 bits (323), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 56/76 (73%), Positives = 64/76 (84%)

Query: 1  MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
          MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IVSS  ELRCPECR LVEC V
Sbjct: 1  MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVSSRNELRCPECRTLVECGV 60

Query: 61 DELPPNVLLMRILEGL 76
          DELP N+LL+R+L+G+
Sbjct: 61 DELPSNILLVRLLDGI 76

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as ube2d1 or ube2n and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A5D8S5|SH3R1_DANRE E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio GN=sh3rf1 PE=2 SV=2

 Score =  120 bits (302), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/76 (68%), Positives = 62/76 (81%)

Query: 1  MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
          MDE  L DLLEC VCL+RLD ++KVLPCQHTFC++CL  IV S  ELRCPECR LVE  V
Sbjct: 1  MDESALLDLLECPVCLERLDATAKVLPCQHTFCRRCLLGIVGSRGELRCPECRTLVESGV 60

Query: 61 DELPPNVLLMRILEGL 76
          DELP N+LL+R+L+G+
Sbjct: 61 DELPSNILLVRLLDGI 76

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as ube2d1 or ube2n and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q71F54|SH3R1_RAT E3 ubiquitin-protein ligase SH3RF1 OS=Rattus norvegicus GN=Sh3rf1 PE=1 SV=1

 Score =  120 bits (301), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/76 (69%), Positives = 61/76 (80%)

Query: 1  MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
          MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IV S  ELRCPECR LV   V
Sbjct: 1  MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV 60

Query: 61 DELPPNVLLMRILEGL 76
          DELP N+LL+R+L+G+
Sbjct: 61 DELPSNILLVRLLDGI 76

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination. Stimulates ubiquitination of potassium channel KCNJ1, enhancing it's dynamin-dependent and clathrin-independent endocytosis.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q69ZI1|SH3R1_MOUSE E3 ubiquitin-protein ligase SH3RF1 OS=Mus musculus GN=Sh3rf1 PE=1 SV=2

 Score =  120 bits (301), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/76 (69%), Positives = 61/76 (80%)

Query: 1  MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
          MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IV S  ELRCPECR LV   V
Sbjct: 1  MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV 60

Query: 61 DELPPNVLLMRILEGL 76
          DELP N+LL+R+L+G+
Sbjct: 61 DELPSNILLVRLLDGI 76

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination. Stimulates ubiquitination of potassium channel KCNJ1, enhancing it's dynamin-dependent and clathrin-independent endocytosis.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RBR0|SH3R1_PONAB E3 ubiquitin-protein ligase SH3RF1 OS=Pongo abelii GN=SH3RF1 PE=2 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/76 (68%), Positives = 61/76 (80%)

Query: 1  MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
          MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IV S  ELRCPECR LV   V
Sbjct: 1  MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV 60

Query: 61 DELPPNVLLMRILEGL 76
          +ELP N+LL+R+L+G+
Sbjct: 61 EELPSNILLVRLLDGI 76

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination. Stimulates ubiquitination of potassium channel KCNJ1, enhancing it's dynamin-dependent and clathrin-independent endocytosis.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7Z6J0|SH3R1_HUMAN E3 ubiquitin-protein ligase SH3RF1 OS=Homo sapiens GN=SH3RF1 PE=1 SV=2

 Score =  118 bits (296), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/76 (68%), Positives = 61/76 (80%)

Query: 1  MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
          MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IV S  ELRCPECR LV   V
Sbjct: 1  MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV 60

Query: 61 DELPPNVLLMRILEGL 76
          +ELP N+LL+R+L+G+
Sbjct: 61 EELPSNILLVRLLDGI 76

Plays an essential role in the targeting of HIV-1 Gag to the plasma membrane, this function is dependent on it's RING domain, and hence it's E3 ligase activity.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
193695152	827	PREDICTED: putative E3 ubiquitin-protein	0.944	0.185	0.432	4e-46
270006379	779	plenty of SH3s [Tribolium castaneum]	0.944	0.196	0.408	2e-44
189236524	656	PREDICTED: similar to AGAP011487-PA [Tri	0.944	0.233	0.408	2e-44
242006001	744	conserved hypothetical protein [Pediculu	0.925	0.201	0.471	3e-40
357624146	800	hypothetical protein KGM_13238 [Danaus p	0.944	0.191	0.401	9e-40
170040334	846	Plenty of SH3s [Culex quinquefasciatus]	0.975	0.186	0.450	4e-39
405963292	784	SH3 domain-containing RING finger protei	0.944	0.195	0.388	2e-38
383851892	888	PREDICTED: SH3 domain-containing RING fi	0.469	0.085	0.881	7e-36
383851890	894	PREDICTED: SH3 domain-containing RING fi	0.469	0.085	0.881	7e-36
307195492	917	SH3 domain-containing RING finger protei	0.469	0.082	0.881	1e-35

>gi|193695152|ref|XP_001946794.1| PREDICTED: putative E3 ubiquitin-protein ligase SH3RF1-like [Acyrthosiphon pisum]

 Score =  189 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 100/231 (43%), Positives = 124/231 (53%), Gaps = 78/231 (33%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
           MDE  LNDLLECSVCL+RL+TSSKVL CQHTFCKKCL+EIV++HKELRCPECR LV+C+V
Sbjct: 1   MDEKLLNDLLECSVCLERLNTSSKVLSCQHTFCKKCLDEIVATHKELRCPECRTLVDCRV 60

Query: 61  DELPPNVLLMRILEGLF----------------------PLVVSFIRFFLNIL------- 91
           DELPPNVLLMRILEG+                       P     + +  N+        
Sbjct: 61  DELPPNVLLMRILEGMKSKNATISPPKKPSAVACSDQRPPKTSKQVPYQRNMFARALYDY 120

Query: 92  ------DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ---------------- 129
                 DL+FKK D++ILR+K+D+NW+ GE NG  G FP+SYVQ                
Sbjct: 121 SSKEPGDLSFKKGDMIILRQKVDSNWYQGEANGVIGIFPLSYVQVFPTSLPSHIPQCKAL 180

Query: 130 ---------------------------IDNNWFYGEVNGTTGAFPMSYVQF 153
                                      ID NW  G+++   G FP+S+V  
Sbjct: 181 YDFKMNKEDDEGCLSFSKGDIITVLRRIDQNWAEGKISNRIGIFPLSFVDL 231

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006379|gb|EFA02827.1| plenty of SH3s [Tribolium castaneum]

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/240 (40%), Positives = 123/240 (51%), Gaps = 87/240 (36%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
           MDE TLNDLLECSVCLDRLDTSSKVLPCQHTFC+KCL+EIV  HKELRCPECR+LV  KV
Sbjct: 1   MDEGTLNDLLECSVCLDRLDTSSKVLPCQHTFCRKCLQEIVHKHKELRCPECRILVNSKV 60

Query: 61  DELPPNVLLMRILEGL-------------------------------------FPLVVSF 83
           D+LPPNVLLMRILEG+                                      P +V  
Sbjct: 61  DDLPPNVLLMRILEGMKNNAVPKKQQRAPKSIQAPAVHHTPVHQQQKINNNKTSPQLVPH 120

Query: 84  IRFFLNILD--------LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI----- 130
             +   + D        L+FK+ D+++LR++ID +W+ GE  G  G FP+SYVQI     
Sbjct: 121 QPYAKALYDYEPKEVGDLSFKRGDVILLRKRIDAHWYQGECGGKQGLFPLSYVQIITPLP 180

Query: 131 -------------------------------------DNNWFYGEVNGTTGAFPMSYVQF 153
                                                D NW  G+++G  G FP+++V+ 
Sbjct: 181 SHIPQCKALYDFQTDKHEEEGCLTFKEGDIINVIRRVDENWAEGKLDGRIGIFPLTFVEL 240

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236524|ref|XP_975448.2| PREDICTED: similar to AGAP011487-PA [Tribolium castaneum]

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/240 (40%), Positives = 123/240 (51%), Gaps = 87/240 (36%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
           MDE TLNDLLECSVCLDRLDTSSKVLPCQHTFC+KCL+EIV  HKELRCPECR+LV  KV
Sbjct: 1   MDEGTLNDLLECSVCLDRLDTSSKVLPCQHTFCRKCLQEIVHKHKELRCPECRILVNSKV 60

Query: 61  DELPPNVLLMRILEGL-------------------------------------FPLVVSF 83
           D+LPPNVLLMRILEG+                                      P +V  
Sbjct: 61  DDLPPNVLLMRILEGMKNNAVPKKQQRAPKSIQAPAVHHTPVHQQQKINNNKTSPQLVPH 120

Query: 84  IRFFLNILD--------LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI----- 130
             +   + D        L+FK+ D+++LR++ID +W+ GE  G  G FP+SYVQI     
Sbjct: 121 QPYAKALYDYEPKEVGDLSFKRGDVILLRKRIDAHWYQGECGGKQGLFPLSYVQIITPLP 180

Query: 131 -------------------------------------DNNWFYGEVNGTTGAFPMSYVQF 153
                                                D NW  G+++G  G FP+++V+ 
Sbjct: 181 SHIPQCKALYDFQTDKHEEEGCLTFKEGDIINVIRRVDENWAEGKLDGRIGIFPLTFVEL 240

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006001|ref|XP_002423847.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507069|gb|EEB11109.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 115/193 (59%), Gaps = 43/193 (22%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
           MDEWTLNDLLECSVCL+RLDTSSK+LPCQHTFCKKCL+EIVS+HKEL+CPECR+LVE  +
Sbjct: 1   MDEWTLNDLLECSVCLERLDTSSKILPCQHTFCKKCLQEIVSTHKELKCPECRILVEAPI 60

Query: 61  DELPPNVLLMRILEGLFPLVVSFIRFFLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTT 120
           DELPPNVLLMRILEG+           LN  D + K+ +I+    +  NN     + G +
Sbjct: 61  DELPPNVLLMRILEGM-------KNSELNKSDSSLKEGNILKSTSQGSNNPSCNNL-GNS 112

Query: 121 GAFPM----------------SYV-------------------QIDNNWFYGEVNGTTGA 145
              P+                +Y+                   ++D NW +GE  G +G 
Sbjct: 113 KTQPVKKQNTLPSQPYARAIYTYISKEPEDLCFQKGDIILLNRRVDANWCHGECCGKSGI 172

Query: 146 FPMSYVQFVWYLP 158
           FP+SYVQ +  LP
Sbjct: 173 FPLSYVQVIIPLP 185

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624146|gb|EHJ75026.1| hypothetical protein KGM_13238 [Danaus plexippus]

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 92/229 (40%), Positives = 120/229 (52%), Gaps = 76/229 (33%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
           MDE  LNDLLECSVCL+RLDTSS+VLPCQHTFC KCL+ IV SHKELRCPECRVLVE +V
Sbjct: 1   MDEGLLNDLLECSVCLERLDTSSRVLPCQHTFCLKCLKVIVESHKELRCPECRVLVEARV 60

Query: 61  DELPPNVLLMRILEGL---------------FPLVVSFI--------------RFFLNIL 91
           +ELPPNVLLMRILEG+                    S +              R   + +
Sbjct: 61  EELPPNVLLMRILEGMKNAPRKTSSARNKGTHAQAASVVHQSARANRQPPPHGRALYDFV 120

Query: 92  -----DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV------------------ 128
                DL+FKK + ++L++K+D  W++GE +G TG FP++YV                  
Sbjct: 121 SKEPGDLSFKKGETILLQKKLDTFWYHGECSGRTGMFPITYVQVVVPLPVPSALCKALYD 180

Query: 129 ------------------------QIDNNWFYGEVNGTTGAFPMSYVQF 153
                                   ++D NW  G +    G FP+++V+ 
Sbjct: 181 FRMSAPDEEGCLAFDKGAIITVHRRVDENWAEGRLEQRVGIFPIAFVEL 229

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170040334|ref|XP_001847958.1| Plenty of SH3s [Culex quinquefasciatus] gi|167863885|gb|EDS27268.1| Plenty of SH3s [Culex quinquefasciatus]

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 95/211 (45%), Positives = 119/211 (56%), Gaps = 53/211 (25%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
           MDE  LNDLLECSVCL+RLDTSSKVLPCQHTFC+KCLEEIV+SH+ELRCPECRVLVE K+
Sbjct: 1   MDERLLNDLLECSVCLERLDTSSKVLPCQHTFCRKCLEEIVASHQELRCPECRVLVEIKI 60

Query: 61  DELPPNVLLMRILEG--LFPLVVSFIRFFLN-------ILDLN----------------- 94
           DELPPNVLLMRILE   + PL  S +    N         DLN                 
Sbjct: 61  DELPPNVLLMRILEAIDMNPLSCSILASASNNRTVPPTPFDLNASDTTSSSVTTSPNSST 120

Query: 95  --------FKKDDIVILR----RKIDNNWFYGEVNGTTGAFPMSY--------------- 127
                   FK+    ++R    R+   + ++  +   + + P S+               
Sbjct: 121 STTSPSSSFKRQPSKLIRPNPSRQYLTHSYHSRLTYISSSLPPSFRSDISFKKGDIIILK 180

Query: 128 VQIDNNWFYGEVNGTTGAFPMSYVQFVWYLP 158
            +ID+NW  GEVNG  GA P++++Q V  LP
Sbjct: 181 KKIDHNWCVGEVNGKEGAVPLNHLQVVVPLP 211

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405963292|gb|EKC28879.1| SH3 domain-containing RING finger protein 3 [Crassostrea gigas]

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 89/229 (38%), Positives = 116/229 (50%), Gaps = 76/229 (33%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
           MDE +LN+LLECSVCLDRLD +SKVLPCQHTFC++CL+EI  + +ELRCPECR LVE  V
Sbjct: 1   MDEQSLNELLECSVCLDRLDHTSKVLPCQHTFCRRCLDEIYGTKRELRCPECRTLVEIPV 60

Query: 61  DELPPNVLLMRILEG-----------------------LFPLVVSFI-----RFFLNI-- 90
           +ELP N+LL+R+LEG                       LF    S +     R   N   
Sbjct: 61  EELPSNILLIRLLEGLKTKNSERTRSPARHGEHGYNESLFSKQSSTLNPPSARALFNYEA 120

Query: 91  ---LDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ------------------ 129
               DL FKK D+++L+R++D NW+ GE+N   G FP SYVQ                  
Sbjct: 121 SEQSDLTFKKGDLILLKRQVDENWYQGELNSRQGFFPASYVQVLVPLPVTIPQCRGLYDF 180

Query: 130 -------------------------IDNNWFYGEVNGTTGAFPMSYVQF 153
                                    +D+NW  G+     G FP+S+V+ 
Sbjct: 181 DVEDENDKKDCLCFKKDEILTVIKRVDSNWIEGKKGEKIGIFPISFVEL 229

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|383851892|ref|XP_003701465.1| PREDICTED: SH3 domain-containing RING finger protein 3-like isoform 2 [Megachile rotundata]

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/76 (88%), Positives = 74/76 (97%)

Query: 1  MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
          MDE TLNDLLECSVCL+RLDTSSKVLPCQHTFCKKCLEEIV++H+ELRCPECRVLV+ KV
Sbjct: 1  MDECTLNDLLECSVCLERLDTSSKVLPCQHTFCKKCLEEIVNTHRELRCPECRVLVDAKV 60

Query: 61 DELPPNVLLMRILEGL 76
          D+LPPNVLLMRILEG+
Sbjct: 61 DDLPPNVLLMRILEGM 76

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851890|ref|XP_003701464.1| PREDICTED: SH3 domain-containing RING finger protein 3-like isoform 1 [Megachile rotundata]

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/76 (88%), Positives = 74/76 (97%)

Query: 1  MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
          MDE TLNDLLECSVCL+RLDTSSKVLPCQHTFCKKCLEEIV++H+ELRCPECRVLV+ KV
Sbjct: 1  MDECTLNDLLECSVCLERLDTSSKVLPCQHTFCKKCLEEIVNTHRELRCPECRVLVDAKV 60

Query: 61 DELPPNVLLMRILEGL 76
          D+LPPNVLLMRILEG+
Sbjct: 61 DDLPPNVLLMRILEGM 76

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195492|gb|EFN77378.1| SH3 domain-containing RING finger protein 3 [Harpegnathos saltator]

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/76 (88%), Positives = 73/76 (96%)

Query: 1  MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
          MDE  LNDLLECSVCL+RLDTSSKVLPCQHTFCKKCLEEIVS+H+ELRCPECRVLV+ KV
Sbjct: 1  MDECMLNDLLECSVCLERLDTSSKVLPCQHTFCKKCLEEIVSTHRELRCPECRVLVDAKV 60

Query: 61 DELPPNVLLMRILEGL 76
          D+LPPNVLLMRILEG+
Sbjct: 61 DDLPPNVLLMRILEGM 76

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
FB|FBgn0040294	838	POSH "Plenty of SH3s" [Drosoph	0.469	0.090	0.815	1.7e-47
UNIPROTKB|F1NYR2	892	SH3RF1 "Uncharacterized protei	0.469	0.085	0.723	2.5e-42
UNIPROTKB|C9JNJ4	716	SH3RF3 "SH3 domain-containing	0.469	0.106	0.723	5.1e-42
MGI|MGI:2444637	878	Sh3rf3 "SH3 domain containing	0.469	0.086	0.723	1.9e-41
UNIPROTKB|Q8TEJ3	882	SH3RF3 "SH3 domain-containing	0.469	0.086	0.723	1.9e-41
UNIPROTKB|F1PBV0	882	SH3RF3 "Uncharacterized protei	0.469	0.086	0.723	5e-41
RGD|735154	894	Sh3rf1 "SH3 domain containing	0.469	0.085	0.697	1.7e-40
UNIPROTKB|Q71F54	894	Sh3rf1 "E3 ubiquitin-protein l	0.469	0.085	0.697	1.7e-40
UNIPROTKB|F1Q3X8	882	SH3RF1 "Uncharacterized protei	0.469	0.086	0.684	5.5e-40
MGI|MGI:1913066	892	Sh3rf1 "SH3 domain containing	0.469	0.085	0.697	5.7e-40

FB|FBgn0040294 POSH "Plenty of SH3s" [Drosophila melanogaster (taxid:7227)]

 Score = 354 (129.7 bits), Expect = 1.7e-47, Sum P(3) = 1.7e-47
 Identities = 62/76 (81%), Positives = 72/76 (94%)

Query:     1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
             MDE TLNDLLECSVCL+RLDT+SKVLPCQHTFC+KCL++IV+S  +LRCPECR+LV CK+
Sbjct:     1 MDEHTLNDLLECSVCLERLDTTSKVLPCQHTFCRKCLQDIVASQHKLRCPECRILVSCKI 60

Query:    61 DELPPNVLLMRILEGL 76
             DELPPNVLLMRILEG+
Sbjct:    61 DELPPNVLLMRILEGM 76

GO:0008340 "determination of adult lifespan" evidence=NAS;IMP

GO:0008104 "protein localization" evidence=IMP

GO:0045451 "pole plasm oskar mRNA localization" evidence=IMP

GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IMP

GO:0042052 "rhabdomere development" evidence=IMP

GO:0030159 "receptor signaling complex scaffold activity" evidence=NAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0060548 "negative regulation of cell death" evidence=IMP

UNIPROTKB|F1NYR2 SH3RF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 303 (111.7 bits), Expect = 2.5e-42, Sum P(3) = 2.5e-42
 Identities = 55/76 (72%), Positives = 64/76 (84%)

Query:     1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
             MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IVSS  ELRCPECR LV+C V
Sbjct:    21 MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVSSRNELRCPECRTLVDCGV 80

Query:    61 DELPPNVLLMRILEGL 76
             DELP N+LL+R+L+G+
Sbjct:    81 DELPSNILLVRLLDGI 96

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0046328 "regulation of JNK cascade" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA

UNIPROTKB|C9JNJ4 SH3RF3 "SH3 domain-containing RING finger protein 3" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 5.1e-42, Sum P(3) = 5.1e-42
 Identities = 55/76 (72%), Positives = 67/76 (88%)

Query:     1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
             MDE +L DLLECSVCL+RLDT++KVLPCQHTFC++CLE IV S  ELRCPECR+LV C V
Sbjct:    46 MDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRILVGCGV 105

Query:    61 DELPPNVLLMRILEGL 76
             DELP N+LL+R+L+G+
Sbjct:   106 DELPANILLVRLLDGI 121

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2444637 Sh3rf3 "SH3 domain containing ring finger 3" [Mus musculus (taxid:10090)]

 Score = 311 (114.5 bits), Expect = 1.9e-41, Sum P(3) = 1.9e-41
 Identities = 55/76 (72%), Positives = 67/76 (88%)

Query:     1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
             MDE +L DLLECSVCL+RLDT++KVLPCQHTFC++CLE IV S  ELRCPECR+LV C V
Sbjct:    41 MDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRILVGCGV 100

Query:    61 DELPPNVLLMRILEGL 76
             DELP N+LL+R+L+G+
Sbjct:   101 DELPANILLVRLLDGI 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q8TEJ3 SH3RF3 "SH3 domain-containing RING finger protein 3" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 1.9e-41, Sum P(3) = 1.9e-41
 Identities = 55/76 (72%), Positives = 67/76 (88%)

Query:     1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
             MDE +L DLLECSVCL+RLDT++KVLPCQHTFC++CLE IV S  ELRCPECR+LV C V
Sbjct:    46 MDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRILVGCGV 105

Query:    61 DELPPNVLLMRILEGL 76
             DELP N+LL+R+L+G+
Sbjct:   106 DELPANILLVRLLDGI 121

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PBV0 SH3RF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 311 (114.5 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
 Identities = 55/76 (72%), Positives = 67/76 (88%)

Query:     1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
             MDE +L DLLECSVCL+RLDT++KVLPCQHTFC++CLE IV S  ELRCPECR+LV C V
Sbjct:    40 MDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRILVGCGV 99

Query:    61 DELPPNVLLMRILEGL 76
             DELP N+LL+R+L+G+
Sbjct:   100 DELPANILLVRLLDGI 115

GO:0008270 "zinc ion binding" evidence=IEA

RGD|735154 Sh3rf1 "SH3 domain containing ring finger 1" [Rattus norvegicus (taxid:10116)]

 Score = 285 (105.4 bits), Expect = 1.7e-40, Sum P(3) = 1.7e-40
 Identities = 53/76 (69%), Positives = 61/76 (80%)

Query:     1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
             MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IV S  ELRCPECR LV   V
Sbjct:     1 MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV 60

Query:    61 DELPPNVLLMRILEGL 76
             DELP N+LL+R+L+G+
Sbjct:    61 DELPSNILLVRLLDGI 76

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IEA;ISO

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA;ISO

GO:0046328 "regulation of JNK cascade" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA;ISO

UNIPROTKB|Q71F54 Sh3rf1 "E3 ubiquitin-protein ligase SH3RF1" [Rattus norvegicus (taxid:10116)]

 Score = 285 (105.4 bits), Expect = 1.7e-40, Sum P(3) = 1.7e-40
 Identities = 53/76 (69%), Positives = 61/76 (80%)

Query:     1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
             MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IV S  ELRCPECR LV   V
Sbjct:     1 MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV 60

Query:    61 DELPPNVLLMRILEGL 76
             DELP N+LL+R+L+G+
Sbjct:    61 DELPSNILLVRLLDGI 76

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1Q3X8 SH3RF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 281 (104.0 bits), Expect = 5.5e-40, Sum P(3) = 5.5e-40
 Identities = 52/76 (68%), Positives = 61/76 (80%)

Query:     1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
             MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IV S  ELRCPECR LV   V
Sbjct:     1 MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV 60

Query:    61 DELPPNVLLMRILEGL 76
             +ELP N+LL+R+L+G+
Sbjct:    61 EELPSNILLVRLLDGI 76

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1913066 Sh3rf1 "SH3 domain containing ring finger 1" [Mus musculus (taxid:10090)]

 Score = 285 (105.4 bits), Expect = 5.7e-40, Sum P(3) = 5.7e-40
 Identities = 53/76 (69%), Positives = 61/76 (80%)

Query:     1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
             MDE  L DLLEC VCL+RLD S+KVLPCQHTFCK+CL  IV S  ELRCPECR LV   V
Sbjct:     1 MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGV 60

Query:    61 DELPPNVLLMRILEGL 76
             DELP N+LL+R+L+G+
Sbjct:    61 DELPSNILLVRLLDGI 76

GO:0005078 "MAP-kinase scaffold activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0030027 "lamellipodium" evidence=IDA

GO:0042995 "cell projection" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0046328 "regulation of JNK cascade" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	162
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	1e-16
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	1e-14
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	1e-12
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	3e-12
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	5e-12
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	2e-11
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	7e-11
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	2e-10
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-09
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	9e-09
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	9e-09
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	1e-08
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	3e-08
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	3e-08
smart00184	40	smart00184, RING, Ring finger	4e-08
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	4e-08
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	4e-08
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	1e-07
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	2e-07
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	2e-07
cd11884	56	cd11884, SH3_MYO15, Src Homology 3 domain of Myosi	2e-07
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	4e-07
cd11922	58	cd11922, SH3_Sorbs1_2, Second Src Homology 3 domai	5e-07
smart00326	56	smart00326, SH3, Src homology 3 domains	6e-07
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	8e-07
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	1e-06
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	1e-06
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	1e-06
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	1e-06
cd11990	52	cd11990, SH3_Intersectin2_2, Second Src homology 3	2e-06
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	2e-06
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	2e-06
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	2e-06
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	2e-06
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	6e-06
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	6e-06
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	1e-05
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	1e-05
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	1e-05
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	2e-05
cd11787	53	cd11787, SH3_SH3RF_2, Second Src Homology 3 domain	2e-05
TIGR00599	397	TIGR00599, rad18, DNA repair protein rad18	3e-05
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	4e-05
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	4e-05
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	5e-05
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	5e-05
cd11930	55	cd11930, SH3_SH3RF1_2, Second Src Homology 3 domai	5e-05
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	5e-05
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	5e-05
cd11989	52	cd11989, SH3_Intersectin1_2, Second Src homology 3	5e-05
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	6e-05
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	6e-05
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	7e-05
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	8e-05
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	9e-05
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	1e-04
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	1e-04
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	1e-04
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	1e-04
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	2e-04
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	2e-04
cd11932	57	cd11932, SH3_SH3RF2_2, Second Src Homology 3 domai	2e-04
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	2e-04
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	2e-04
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	2e-04
COG5432	391	COG5432, RAD18, RING-finger-containing E3 ubiquiti	2e-04
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	3e-04
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	3e-04
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	3e-04
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	3e-04
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	3e-04
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	3e-04
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	4e-04
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	4e-04
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	4e-04
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	4e-04
cd11931	55	cd11931, SH3_SH3RF3_2, Second Src Homology 3 domai	4e-04
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	5e-04
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	6e-04
cd11934	59	cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 do	6e-04
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	8e-04
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	8e-04
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	0.001
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	0.001
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	0.001
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	0.001
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	0.002
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	0.002
cd11813	53	cd11813, SH3_SGSM3, Src Homology 3 domain of Small	0.002
COG5574	271	COG5574, PEX10, RING-finger-containing E3 ubiquiti	0.002
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	0.002
cd11947	52	cd11947, SH3_GRAP2_N, N-terminal Src homology 3 do	0.002
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	0.002
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	0.002
cd11922	58	cd11922, SH3_Sorbs1_2, Second Src Homology 3 domai	0.003
cd11935	58	cd11935, SH3_Nebulette_C, C-terminal Src Homology	0.003
pfam00018	47	pfam00018, SH3_1, SH3 domain	0.003
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	0.003
cd11779	57	cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain	0.003
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	0.004
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	0.004
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	0.004
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	0.004
cd12047	53	cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 do	0.004

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 69.3 bits (170), Expect = 1e-16
 Identities = 24/39 (61%), Positives = 32/39 (82%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           DL+FKK DI++LR++ID NW++GE NG  G FP SYVQ+
Sbjct: 15  DLSFKKGDIILLRKRIDENWYHGECNGKQGFFPASYVQV 53

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 63.8 bits (155), Expect = 1e-14
 Identities = 23/38 (60%), Positives = 29/38 (76%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           DL F K DI+ILRRK+D NW++GE+NG  G  P SY+Q
Sbjct: 16  DLKFNKGDIIILRRKVDENWYHGELNGCHGFLPASYIQ 53

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 59.2 bits (143), Expect = 1e-12
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           DL F K DI+ILRR++D NW++GEVNG  G FP ++VQI
Sbjct: 16  DLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFVQI 54

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 57.7 bits (140), Expect = 3e-12
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+ KK DI+ +RR+ID NW+ GE NG  G FP SYV+I
Sbjct: 15  ELSLKKGDIIYIRRQIDKNWYEGEHNGRVGIFPASYVEI 53

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 57.3 bits (138), Expect = 5e-12
 Identities = 20/39 (51%), Positives = 30/39 (76%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           DL F K D+++LRR++D NW+ GE+NG +G FP S V++
Sbjct: 16  DLKFNKGDVILLRRQLDENWYLGEINGVSGIFPASSVEV 54

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 55.4 bits (134), Expect = 2e-11
 Identities = 18/40 (45%), Positives = 30/40 (75%)

Query: 91  LDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           ++L+F+K D++ L R++D NW+ G + G  G FP+SYVQ+
Sbjct: 14  VELSFRKGDVITLTRRVDENWYEGRIGGRQGIFPVSYVQV 53

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 54.2 bits (130), Expect = 7e-11
 Identities = 21/38 (55%), Positives = 28/38 (73%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+FKK D V + RKID NW+ GE +G  G FP+SYV+
Sbjct: 16  ELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVE 53

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 53.4 bits (129), Expect = 2e-10
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L FK+ DI+ L  +ID NW+ G VNG +G FP++YV++
Sbjct: 16  ELGFKEGDIITLTNQIDENWYEGMVNGQSGFFPVNYVEV 54

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
          EC +CL+       +LPC H FC+ C+++ + S K   CP CR
Sbjct: 1  ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGK-NTCPLCR 42

Length = 45

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 48.5 bits (116), Expect = 9e-09
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 11 ECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPECR 53
          EC +CLD  +   +V  LPC H F K+CL++ + S     CP CR
Sbjct: 2  ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSN--TCPLCR 44

Length = 46

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 48.6 bits (116), Expect = 9e-09
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 8  DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
          + LEC +CLD L     + PC H FC++C+   +      +CP CR
Sbjct: 1  EELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKS--KCPICR 44

Length = 45

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+ +  DI+ +  K D+ W+ GE+NG  G FP +YV+
Sbjct: 15  ELSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 47.3 bits (112), Expect = 3e-08
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  +K DIV + ++ID NW+ GE +G  G FP SY+++
Sbjct: 16  ELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRSYIEL 54

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 47.1 bits (112), Expect = 3e-08
 Identities = 18/40 (45%), Positives = 28/40 (70%)

Query: 91  LDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           L+LNFK  D++ L  +++ +W  G V G TG FP+S+V+I
Sbjct: 14  LELNFKAGDVIFLLSRVNKDWLEGTVRGATGIFPLSFVKI 53

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 46.7 bits (111), Expect = 4e-08
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          C +CL+       +LPC HTFC+ C+ + + S     CP C
Sbjct: 1  CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGN-NTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 47.1 bits (113), Expect = 4e-08
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVN-GTTGAFPMSY 127
           +L+FKK DI+ +  K D+ W+ GE+N G  G FP +Y
Sbjct: 15  ELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 47.2 bits (112), Expect = 4e-08
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  +K DIV + +++D NW  GE +G  G FP +YV++
Sbjct: 16  ELTLQKGDIVYIHKEVDKNWLEGEHHGRVGIFPANYVEV 54

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 2/42 (4%)

Query: 91  LDLNFKKDDIVILRRKIDNNWFYGEVNGTT--GAFPMSYVQI 130
           ++L+F+K + + L RK++ NW+ G + GT   G FP SYVQ+
Sbjct: 15  VELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQV 56

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 17/42 (40%), Positives = 31/42 (73%), Gaps = 2/42 (4%)

Query: 91  LDLNFKKDDIVILRRKIDNNWFYGEVNGTT--GAFPMSYVQI 130
           ++L+ +K D V+L +++D NW+ G++ GT   G FP+SYV++
Sbjct: 15  VELSLRKGDRVVLLKQVDQNWYEGKIPGTNRQGIFPVSYVEV 56

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+F+K DI+ +  K D +W+ GE+NG TG FP +YV+
Sbjct: 15  ELSFQKGDIINVLSKDDPDWWRGELNGQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212817 cd11884, SH3_MYO15, Src Homology 3 domain of Myosin XV

 Score = 45.0 bits (107), Expect = 2e-07
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 93  LNFKKDDIVILRRK---IDNNWFYGEVNGTTGAFPMSYVQ 129
           L+F K D++ L  K   +D  W +G ++G +GAFP  YVQ
Sbjct: 16  LSFHKGDVIKLLPKEGPLDPGWLFGTLDGRSGAFPKEYVQ 55

This subfamily is composed of proteins with similarity to Myosin XVa. Myosin XVa is an unconventional myosin that is critical for the normal growth of mechanosensory stereocilia of inner ear hair cells. Mutations in the myosin XVa gene are associated with nonsyndromic hearing loss. Myosin XVa contains a unique N-terminal extension followed by a motor domain, light chain-binding IQ motifs, and a tail consisting of a pair of MyTH4-FERM tandems separated by a SH3 domain, and a PDZ domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 44.0 bits (104), Expect = 4e-07
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
          C +CL+       +LPC H FC KC+   + S   + CP C
Sbjct: 1  CPICLEEPKDPVTILPCGHLFCSKCILSWLES-GNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|212855 cd11922, SH3_Sorbs1_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 44.2 bits (104), Expect = 5e-07
 Identities = 15/42 (35%), Positives = 30/42 (71%), Gaps = 2/42 (4%)

Query: 91  LDLNFKKDDIVILRRKIDNNWFYGEVNGTT--GAFPMSYVQI 130
           ++++F+K + + L R++D NW+ G + GT+  G FP++YV +
Sbjct: 15  VEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 56

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 44.1 bits (105), Expect = 6e-07
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVN-GTTGAFPMSYVQ 129
           +L+FKK DI+ +  K D+ W+ G +  G  G FP +YV+
Sbjct: 18  ELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 43.4 bits (103), Expect = 8e-07
 Identities = 14/26 (53%), Positives = 20/26 (76%)

Query: 129 QIDNNWFYGEVNGTTGAFPMSYVQFV 154
           QID NW+ G VNG +G FP++YV+ +
Sbjct: 30  QIDENWYEGMVNGQSGFFPVNYVEVL 55

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           L F++ DI+ +    D +W+ GE+ G  G FP +YVQ
Sbjct: 16  LEFRRGDIITVLDSSDPDWWKGELRGRVGIFPANYVQ 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 43.2 bits (103), Expect = 1e-06
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+ KK D+V +  K DN W+ GE  G  G  P SYV+ 
Sbjct: 15  ELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVEE 53

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 10 LECSVCLDRLDTSS---KVLPCQHTFCKKCLEEIVSSHKELRCP 50
            C +  + +        +LPC H + +K LE++  +  + +CP
Sbjct: 11 FVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDIVILRRKID--NNWFYGEVNGTTGAFPMSYVQI 130
           DL F+K DI+ + +K D  N+W+ G + G  G FP +YV++
Sbjct: 15  DLAFQKGDIITILKKSDSQNDWWTGRIGGREGIFPANYVEL 55

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212923 cd11990, SH3_Intersectin2_2, Second Src homology 3 domain (or SH3B) of Intersectin-2

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           LNF K+DI+ +  +   NW++GEV+G  G FP SYV++
Sbjct: 16  LNFSKNDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKL 52

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
           +L+F + D++ L+  +   W  GE+NG  G FP+++V
Sbjct: 15  ELSFSEGDVITLKEYVGEEWAKGELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+F K DI+ + + ++  W+ G +NG TG FP +YV+ 
Sbjct: 15  ELSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYVKE 53

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 14/39 (35%), Positives = 25/39 (64%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+FK+ D+++L  K  ++W+ GE NG  G  P  Y+ +
Sbjct: 17  ELSFKRGDVLLLHSKASSDWWRGEHNGMRGLIPHKYISV 55

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           DL+    +IV L  KID  W+ G+   TTG FP ++V+
Sbjct: 15  DLSLNSGEIVYLLEKIDTEWYRGKCKNTTGIFPANHVK 52

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+ K+ D+V I  +K    W+ GE+NG  G FP +YV+
Sbjct: 15  ELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYVE 53

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 41.3 bits (97), Expect = 6e-06
 Identities = 13/38 (34%), Positives = 25/38 (65%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           DL F+K D++++  K++ +W  G+  G  G FP ++V+
Sbjct: 15  DLEFQKGDVILVLSKVNEDWLEGQCKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 127 YVQIDNNWFYGEVNGTTGAFPMSYVQFV 154
           Y QID NW+ GE +G  G FP SY++ +
Sbjct: 28  YKQIDQNWYEGEHHGRVGIFPRSYIELL 55

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L F++ D + +    D NW+ G  +G TG FP +YV 
Sbjct: 15  ELGFRRGDFIEVMDNSDPNWWKGACHGQTGMFPRNYVT 52

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 16/38 (42%), Positives = 28/38 (73%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+F++ DI+ + +K D+ W+ G +NG TG FP +YV+
Sbjct: 15  ELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
           +L+ ++ D+V +   +D  WF GE+NG  G FP  +V
Sbjct: 15  ELDLREGDVVTITGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212721 cd11787, SH3_SH3RF_2, Second Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSY 127
           L FKK D++ + R++D NW  G +    G FP+S+
Sbjct: 19  LTFKKGDVITVIRRVDENWAEGRLGDKIGIFPISF 53

This model represents the second SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
          L+  L C +C D  D    +  C HTFC  C+   +S+    +CP CR   E +  +L  
Sbjct: 23 LDTSLRCHICKDFFD-VPVLTSCSHTFCSLCIRRCLSNQP--KCPLCR--AEDQESKLRS 77

Query: 66 NVLLMRILEG 75
          N L+  I+E 
Sbjct: 78 NWLVSEIVES 87

All proteins in this family for which functions are known are involved in nucleotide excision repair.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 397

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 39.2 bits (91), Expect = 4e-05
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+F K  ++ +  K D +W+ GE+NG TG FP +YV++
Sbjct: 16  ELSFSKGQLINVLNKDDPDWWQGEINGVTGLFPSNYVKM 54

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +++F  DDI+     ID  W+ G   G  G FP +YV++
Sbjct: 15  EISFDPDDIITNIEMIDEGWWRGVCRGKYGLFPANYVEL 53

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 39.2 bits (91), Expect = 5e-05
 Identities = 15/38 (39%), Positives = 27/38 (71%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+F++  I+ + +K D+ W+ G +NG TG FP +YV+
Sbjct: 18  ELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 55

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 14/37 (37%), Positives = 25/37 (67%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
           +L+FKK D + L R++ ++W+ G++NG  G  P  Y+
Sbjct: 15  ELSFKKGDSLTLYRQVSDDWWRGQLNGQDGLVPHKYI 51

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212863 cd11930, SH3_SH3RF1_2, Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 38.8 bits (90), Expect = 5e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
           L F KDDI+ + R++D NW  G +    G FP+SYV
Sbjct: 20  LPFAKDDILTVIRRVDENWAEGMLGDKIGIFPISYV 55

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+F K D++ + R  +  W+ G  NG TG FP +YV+
Sbjct: 15  ELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 52

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDIVILRRK--IDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  ++ DIV +  K   D  W+ GE+NG  G FP ++V+ 
Sbjct: 15  ELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVEP 55

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212922 cd11989, SH3_Intersectin1_2, Second Src homology 3 domain (or SH3B) of Intersectin-1

 Score = 38.5 bits (89), Expect = 5e-05
 Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           LNF K+D++ +  + D  W++GEV G  G FP SYV++
Sbjct: 16  LNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYVKL 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 38.4 bits (90), Expect = 6e-05
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGT---TGAFPMSY 127
           +L F + +I+++  + D+ W+ G + G     G FP+S+
Sbjct: 15  ELTFSEGEIIVVTGEEDDEWWEGHIEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 38.4 bits (89), Expect = 6e-05
 Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           DL F++ D++++ +K D +W+ G V   TG FP +YV+
Sbjct: 15  DLTFQQGDVILVTKK-DGDWWTGTVGDKTGVFPSNYVR 51

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 38.5 bits (90), Expect = 7e-05
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 129 QIDNNWFYGEVNGTTGAFPMSYVQ 152
           + D+ W+ GE+NG  G FP +YV+
Sbjct: 29  KQDDGWWLGELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 38.5 bits (89), Expect = 8e-05
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+FK+ DI+ +L  + D NW+  E+NG  G  P +Y+++
Sbjct: 16  ELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 55

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 38.1 bits (89), Expect = 9e-05
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYVQI 130
            L+F K DI+ +  + +  W++GE+  G  G FP SYV+ 
Sbjct: 15  HLSFAKGDIITVLEQQEM-WWFGELEGGEEGWFPKSYVKE 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDD--IVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           DL+F+  D   V+ R     +W+ G + G  G FP +YV 
Sbjct: 15  DLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYVS 54

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 14/38 (36%), Positives = 27/38 (71%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+F ++D +I    +D++W+ GE +G+ G FP +YV+
Sbjct: 15  ELSFFENDKIINIEFVDDDWWLGECHGSRGLFPSNYVE 52

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           DL F++ D + +  +++  W  G  +G  G FP  +V 
Sbjct: 15  DLGFREGDTIDVLSEVNEAWLEGHSDGRVGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYG--EVNGTTGAFPMSYVQ 129
           +L  K+ DIV + +K ++ WF G  +  G TG FP S+V+
Sbjct: 15  ELELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVE 54

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 89  NILDLNFKKDDIVILRRKI--DNNWFYGEVNGTTGAFPMSYVQ 129
           ++ +L+ ++ D+V +  +I  D  W+ GE NG  G FP +YV+
Sbjct: 13  DMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 55

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+F +  I+ + +K D+ W+ G  NG TG FP +YV+
Sbjct: 15  ELSFMEGAIIYVIKKNDDGWYEGVCNGVTGLFPGNYVE 52

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212865 cd11932, SH3_SH3RF2_2, Second Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
           L F+KDDI+ +  ++D NW  G++    G FP+ +V
Sbjct: 22  LKFQKDDIITVISRVDENWAEGKLGDQVGIFPILFV 57

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVN--GTTGAFPMSYVQ 129
           +++FK  D ++  + ID  W YG V   G TG  P +YV+
Sbjct: 17  EVSFKDGDTIVNVQTIDEGWMYGTVQRTGKTGMLPANYVE 56

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYV 128
           +L+FKK  I+ +L  + D NW+  E++G  G  P +Y+
Sbjct: 15  ELSFKKGSILKVLNMEDDPNWYKAELDGKEGLIPKNYI 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L F K  I+ +  K D +W+ GE+NG  G FP +YV++
Sbjct: 16  ELAFSKGQIINVLNKEDPDWWKGELNGQVGLFPSNYVKL 54

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 6   LNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP 64
           L+ +L C +C  R+  S      C HTFC  C+   + +     CP CR    C+   L 
Sbjct: 22  LDSMLRCRICDCRI--SIPCETTCGHTFCSLCIRRHLGTQP--FCPVCR-EDPCES-RLR 75

Query: 65  PNVLLMRILEGLFPLVVSFIRFFLNIL 91
            +     I E         +R  L  L
Sbjct: 76  GSSGSREINES-HARNRDLLRKVLESL 101

Length = 391

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+ K+ DI+ IL +K    W+ GE+ G  G FP +YV+
Sbjct: 15  ELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVE 53

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 98  DDIVILRRKIDNNWFYGEVNGTTGAFPMSY 127
           D I ++R    + W YGE+NG  G FP SY
Sbjct: 22  DRIAVIRGDDGSGWTYGEINGVKGLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQID 131
           +L+  K D+V I  +   N W+ GEVNG  G FP +YV+ D
Sbjct: 16  ELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVEED 56

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L FK  +I+ +    D NW+ G  +   G FP ++V  
Sbjct: 16  ELTFKAGEIITVLDDSDPNWWKGSNHRGEGLFPANFVTA 54

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 10/57 (17%)

Query: 11  ECSVCLDRLDTSSK--VLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
           EC++C+     + +  VLPC H F   C+++ +  +   +CP CR         +PP
Sbjct: 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS-NKCPVCRT-------AIPP 373

Length = 374

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDN--NWFYGEVNGTTGAFPMSYVQ 129
           +++F+  DI+ +         W  GE+ G TG FP +YV+
Sbjct: 15  EISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYVE 54

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 8  DLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECRVLVE 57
          +   C +CL+R   +   LPC H   C++C + + S  K   CP CR  +E
Sbjct: 1  EDDLCVICLER-PRNVVFLPCGHLCLCEECAKRLRSKKK---CPICRQPIE 47

Length = 49

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSY 127
           DL+F++ D +++   +D  W  G +NG  G FP ++
Sbjct: 15  DLSFQRGDRILVTEHLDAEWSRGRLNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+  K DI+ + R  +  W+ G +NG TG FP +YV+
Sbjct: 17  ELSVCKGDIIYVTRVEEGGWWEGTLNGKTGWFPSNYVR 54

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           DL F   D++++ +K D  W+ G +   TG FP +YV+
Sbjct: 15  DLTFNAGDVILVTKK-DGEWWTGTIGDRTGIFPSNYVR 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212864 cd11931, SH3_SH3RF3_2, Second Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
           L F KD+I+ + R++D NW  G +    G FP+ YV
Sbjct: 20  LTFTKDEILTVIRRVDENWAEGMLGDKIGIFPILYV 55

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 35.9 bits (83), Expect = 5e-04
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           L+F++ DI+ +    D NW+ G ++G  G FP +YV 
Sbjct: 16  LSFRRGDIIEVLDCPDPNWWRGRISGRVGFFPRNYVH 52

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQID 131
           +L FK  DI+ +    D NW+ GE    TG FP ++V  D
Sbjct: 16  ELTFKAGDIITILDDSDPNWWKGETPQGTGLFPSNFVTAD 55

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212867 cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 domain of LIM and SH3 domain protein 1

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
           +++F+  D ++  ++ID+ W YG V   G TG  P +YV+
Sbjct: 18  EVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 57

Lasp1 is a cytoplasmic protein that binds focal adhesion proteins and is involved in cell signaling, migration, and proliferation. It is overexpressed in several cancer cells including breast, ovarian, bladder, and liver. In cancer cells, it can be found in the nucleus; its degree of nuclear localization correlates with tumor size and poor prognosis. Lasp1 is a 36kD protein containing an N-terminal LIM domain, two nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 35.7 bits (82), Expect = 8e-04
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 129 QIDNNWFYGEVNGTTGAFPMSYVQFV 154
           ++D NW  GE +G  G FP +YV+ +
Sbjct: 30  EVDKNWLEGEHHGRVGIFPANYVEVL 55

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
           DL FKK +I+ + RK +  W+      G TG  P+ YV+
Sbjct: 16  DLPFKKGEILTVIRKPEEQWWNARNSEGKTGMIPVPYVE 54

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSY 127
           +L+FK  DI+     ID  W  GE+ G +G FP ++
Sbjct: 15  ELSFKAGDIITELESIDEEWMSGELRGKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 95  FKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
           F++ D++I    ID+ W  G V   G +G  P +YV+
Sbjct: 18  FQEGDVIINVEIIDDGWMEGTVQRTGQSGMLPANYVE 54

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 34.9 bits (81), Expect = 0.001
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           L+ +K D V++  K  + W+ GE NG  G FP +YV 
Sbjct: 16  LSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYVT 52

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYV 128
           +L   + DI+ +  K ++NW++G  VNG  G FP +YV
Sbjct: 15  ELTIHRGDIIRVLYKDNDNWWFGSLVNGQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 129 QIDNNWFYGEVNGTT--GAFPMSYVQFV 154
           Q+D NW+ G++ GT   G FP+SYV+ +
Sbjct: 30  QVDQNWYEGKIPGTNRQGIFPVSYVEVI 57

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 91  LDLNFKKDDIVILRRKID-----NNWFYGEV-NGTTGAFPMSYVQI 130
           ++L+ KK DIV +  K D     + W+ G   +G  G FP +YV++
Sbjct: 15  MELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYVEV 60

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212747 cd11813, SH3_SGSM3, Src Homology 3 domain of Small G protein Signaling Modulator 3

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 14/39 (35%), Positives = 26/39 (66%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L F+K+DI+ +  + D + + GE+NG  G FP  +V++
Sbjct: 15  ELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEL 53

SGSM3 is also called Merlin-associated protein (MAP), RUN and SH3 domain-containing protein (RUSC3), RUN and TBC1 domain-containing protein 3 (RUTBC3), Rab GTPase-activating protein 5 (RabGAP5), or Rab GAP-like protein (RabGAPLP). It is expressed ubiquitously and functions as a regulator of small G protein RAP- and RAB-mediated neuronal signaling. It is involved in modulating NGF-mediated neurite outgrowth and differentiation. It also interacts with the tumor suppressor merlin and may play a role in the merlin-associated suppression of cell growth. SGSM3 contains TBC, SH3, and RUN domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 11  ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
           +C +CL+  +  S   PC H FC  CL    +  K   CP CR
Sbjct: 217 KCFLCLEEPEVPSC-TPCGHLFCLSCLLISWTKKKYEFCPLCR 258

Length = 271

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDI-VILRRKIDNNWFYGE-VNGTTGAFPMSYVQI 130
           DL FKK DI  I+    D NW+  +  +G  G  P +YVQ 
Sbjct: 17  DLPFKKGDILTIVAVTKDPNWYKAKNKDGREGMIPANYVQK 57

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212880 cd11947, SH3_GRAP2_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 7/42 (16%)

Query: 92  DLNFKKDDIVILRRKI---DNNWFYGEVNGTTGAFPMSYVQI 130
           +L+FKK D++    KI   D+ WF  E+NG  G  P ++V I
Sbjct: 15  ELSFKKGDVL----KILSSDDIWFKAELNGEEGYVPKNFVDI 52

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also have roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDIVILRRKI--DNNWFYGEVNGTTGAFPMSYVQI 130
           +L+FK+ +I+++  K   +  W+ GE+NG  G FP ++V  
Sbjct: 17  ELDFKEGEIILIISKDTGEPGWWKGELNGKEGVFPDNFVSQ 57

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 92  DLNFKKDDIVILRRKI--DNNWFYGEVNGTTGAFPMSYV 128
           +L  KK D++ +  K   D  W+ GE+NG  G FP ++V
Sbjct: 15  ELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFV 53

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212855 cd11922, SH3_Sorbs1_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 129 QIDNNWFYGEVNGTT--GAFPMSYVQFV 154
           Q+D NW+ G + GT+  G FP++YV  +
Sbjct: 30  QVDENWYEGRIPGTSRQGIFPITYVDVI 57

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212868 cd11935, SH3_Nebulette_C, C-terminal Src Homology 3 domain of Nebulette and LIM-nebulette (or Lasp2)

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQIDN 132
           +++F+  D ++  + ID  W YG V   G TG  P +Y++  N
Sbjct: 16  EVSFRDGDYIVNVQPIDEGWMYGTVQRTGRTGMLPANYIEFVN 58

Nebulette is a cardiac-specific protein that localizes to the Z-disc. It interacts with tropomyosin and is important in stabilizing actin thin filaments in cardiac muscles. Polymorphisms in the nebulette gene are associated with dilated cardiomyopathy, with some mutations resulting in severe heart failure. Nebulette is a 107kD protein that contains an N-terminal acidic region, multiple nebulin repeats, and a C-terminal SH3 domain. LIM-nebulette, also called Lasp2 (LIM and SH3 domain protein 2), is an alternatively spliced variant of nebulette. Although it shares a gene with nebulette, Lasp2 is not transcribed from a muscle-specific promoter, giving rise to its multiple tissue expression pattern with highest amounts in the brain. It can crosslink actin filaments and it affects cell spreading. Lasp2 is a 34kD protein containing an N-terminal LIM domain, three nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFP 124
           +L+FKK DI+I+  K D+ W+ G +  G  G  P
Sbjct: 13  ELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIP 46

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV---NGTT--GAFPMSYVQ 129
           DLNF    ++ +  + D +W++GE    NG T  G FP ++V+
Sbjct: 17  DLNFDVGQLITVTEEEDADWYFGEYVDSNGNTKEGIFPKNFVE 59

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212713 cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain of Insulin Receptor tyrosine kinase Substrate p53, Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2 (BAIAP2)-Like proteins, and similar proteins

 Score = 33.8 bits (78), Expect = 0.003
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 93  LNFKK-DDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQ 129
           L+F++ D I +L  +  + W YGE   +G  G FP++Y +
Sbjct: 17  LSFEEGDVITLLGPEPRDGWHYGENERSGRRGWFPIAYTE 56

Proteins in this family include IRSp53, BAIAP2L1, BAIAP2L2, and similar proteins. They all contain an Inverse-Bin/Amphiphysin/Rvs (I-BAR) or IMD domain in addition to the SH3 domain. IRSp53, also known as BAIAP2, is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. BAIAP2L1, also called IRTKS (Insulin Receptor Tyrosine Kinase Substrate), serves as a substrate for the insulin receptor and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. IRSp53 and IRTKS also mediate the recruitment of effector proteins Tir and EspFu, which regulate host cell actin reorganization, to bacterial attachment sites. BAIAP2L2 co-localizes with clathrin plaques but its function has not been determined. The SH3 domains of IRSp53 and IRTKS have been shown to bind the proline-rich C-terminus of EspFu. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 131 DNNWFYGEVNGTTGAFPMSYVQ 152
           D +W+ GE+ G  G FP +YVQ
Sbjct: 31  DPDWWKGELRGRVGIFPANYVQ 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 131 DNNWFYGEVNGTTGAFPMSYVQ 152
           D NW+ G  +G TG FP +YV 
Sbjct: 31  DPNWWKGACHGQTGMFPRNYVT 52

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 33.5 bits (77), Expect = 0.004
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
           L+F+  D +++ RK   +W++ E NG  G  P S++
Sbjct: 16  LSFESGDKLLVLRKPSVDWWWAEHNGCCGYIPASHL 51

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L F+K DI+ IL  + D NW+  E+ G  G  P +Y+++
Sbjct: 15  ELPFQKGDILKILNMEDDQNWYKAELQGREGYIPKNYIKV 54

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212980 cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 domain of NADPH oxidase activator 1

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           DL F + D + +  +++  W  G  +G  G FP  +  
Sbjct: 15  DLEFSQGDTIDILSEVNQEWLEGHCDGRIGIFPKCFAV 52

Noxa1 is a homolog of p67phox and is a cytosolic subunit of the nonphagocytic NADPH oxidase complex Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Noxa1 is co-expressed with Nox1 in colon, stomach, uterus, prostate, and vascular smooth muscle cells, consistent with its regulatory role. It does not interact with p40phox, unlike p67phox, making Nox1 activity independent of p40phox, unlike Nox2. Noxa1 contains TPR, PB1, and C-terminal SH3 domains, but lacks the central SH3 domain that is present in p67phox. The TPR domain binds activated GTP-bound Rac. The C-terminal SH3 domain binds the polyproline motif found at the C-terminus of Noxo1, a homolog of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG4348|consensus	627		99.67
KOG4225|consensus	489		99.63
KOG4226|consensus	379		99.61
KOG4348|consensus	627		99.56
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.51
KOG1029|consensus	1118		99.48
KOG1029|consensus	1118		99.47
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.4
KOG0287|consensus	442		99.39
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.39
KOG4792|consensus	293		99.38
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.34
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.28
KOG1118|consensus	366		99.28
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.27
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	99.27
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.25
KOG4226|consensus	379		99.24
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	99.23
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	99.22
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.21
KOG4225|consensus	489		99.2
PHA02929	238	N1R/p28-like protein; Provisional	99.19
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.18
KOG0823|consensus	230		99.13
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	99.13
KOG0317|consensus	293		99.12
PF14634	44	zf-RING_5: zinc-RING finger domain	99.09
KOG2199|consensus	462		99.07
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.05
KOG2070|consensus	661		99.04
KOG0320|consensus	187		99.02
PHA02926	242	zinc finger-like protein; Provisional	98.99
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.98
KOG2996|consensus	865		98.95
KOG2177|consensus	386		98.9
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.85
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.83
KOG2164|consensus	513		98.79
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.73
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	98.71
KOG4628|consensus	348		98.67
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.66
KOG3601|consensus	222		98.64
KOG2996|consensus	865		98.63
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	98.61
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	98.61
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.6
KOG2660|consensus	331		98.57
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	98.53
KOG0311|consensus	381		98.49
KOG3632|consensus	1335		98.49
KOG4159|consensus	398		98.47
KOG0802|consensus	543		98.46
KOG0978|consensus	698		98.45
KOG0162|consensus	1106		98.44
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.34
KOG2856|consensus	472		98.23
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.22
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	98.22
KOG2879|consensus	298		98.21
KOG0824|consensus	324		98.21
COG5152	259	Uncharacterized conserved protein, contains RING a	98.21
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.15
KOG1039|consensus	344		98.08
KOG2070|consensus	661		98.0
KOG1843|consensus	473		97.95
KOG0515|consensus	752		97.9
KOG1264|consensus	1267		97.9
KOG1813|consensus	313		97.88
KOG1734|consensus	328		97.85
KOG0804|consensus	493		97.82
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.81
KOG2546|consensus	483		97.81
KOG0297|consensus	391		97.8
KOG2546|consensus	483		97.77
KOG4172|consensus	62		97.66
KOG3601|consensus	222		97.65
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.64
KOG1702|consensus	264		97.63
KOG3655|consensus	484		97.61
KOG3523|consensus	695		97.55
KOG4792|consensus	293		97.55
KOG1002|consensus	791		97.53
KOG4185|consensus	296		97.5
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	97.48
KOG4265|consensus	349		97.47
KOG4367|consensus	699		97.47
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.47
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.45
KOG1785|consensus	563		97.44
KOG3875|consensus	362		97.43
KOG1451|consensus	812		97.29
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	97.26
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	97.23
KOG2222|consensus	848		97.16
KOG1941|consensus	518		97.14
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	97.14
KOG3655|consensus	484		97.13
KOG3002|consensus	299		97.06
KOG3725|consensus	375		96.98
KOG0828|consensus	636		96.94
KOG1493|consensus	84		96.91
KOG0827|consensus	465		96.89
KOG1118|consensus	366		96.82
KOG1264|consensus	1267		96.79
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.75
KOG2930|consensus	114		96.7
KOG0825|consensus	1134		96.7
KOG2856|consensus	472		96.64
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	96.63
KOG4692|consensus	489		96.63
KOG1645|consensus	463		96.61
KOG4575|consensus	874		96.6
KOG3039|consensus	303		96.6
KOG4275|consensus	350		96.34
KOG0826|consensus	357		96.31
KOG1001|consensus	674		96.31
KOG1451|consensus	812		96.27
KOG1571|consensus	355		96.24
KOG0162|consensus	1106		96.23
KOG4278|consensus	1157		96.21
KOG1843|consensus	473		96.2
KOG1814|consensus	445		96.2
KOG4773|consensus	386		96.15
KOG2817|consensus	394		96.15
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	96.12
KOG4739|consensus	233		96.07
KOG3775|consensus	482		96.03
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	96.0
KOG3800|consensus	300		95.99
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	95.91
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.81
PF04641	260	Rtf2: Rtf2 RING-finger	95.78
KOG2528|consensus	490		95.59
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.59
KOG2114|consensus	933		95.52
PHA02825	162	LAP/PHD finger-like protein; Provisional	95.42
KOG3161|consensus	861		95.37
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	95.09
KOG1702|consensus	264		95.02
KOG2932|consensus	389		94.97
KOG3632|consensus	1335		94.86
KOG4445|consensus	368		94.85
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	94.8
KOG4773|consensus	386		94.53
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	94.46
KOG0197|consensus	468		94.41
KOG0609|consensus	542		94.1
KOG1940|consensus	276		94.02
PHA03096	284	p28-like protein; Provisional	94.01
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	93.99
KOG4362|consensus	684		93.85
KOG4429|consensus	421		93.6
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	93.44
COG5175	480	MOT2 Transcriptional repressor [Transcription]	93.25
COG5109	396	Uncharacterized conserved protein, contains RING Z	93.19
smart00287	63	SH3b Bacterial SH3 domain homologues.	92.83
KOG0298|consensus	1394		92.45
PHA02862	156	5L protein; Provisional	92.16
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	92.15
KOG3970|consensus	299		92.1
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	91.77
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	91.55
KOG1100|consensus	207		91.41
KOG1952|consensus	950		90.86
KOG2222|consensus	848		90.8
KOG1428|consensus	3738		90.65
KOG1812|consensus	384		90.43
KOG3039|consensus	303		90.28
KOG3268|consensus	234		90.17
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	89.68
KOG4575|consensus	874		89.55
KOG3523|consensus	695		89.28
KOG3812|consensus	475		89.09
KOG2034|consensus	911		88.8
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	88.33
KOG1815|consensus	444		88.25
KOG2528|consensus	490		88.02
KOG0199|consensus	1039		87.06
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	86.98
PRK10884	206	SH3 domain-containing protein; Provisional	86.9
KOG3579|consensus	352		86.47
KOG3113|consensus	293		86.06
KOG4429|consensus	421		85.83
KOG3899|consensus	381		85.35
KOG3771|consensus	460		85.1
KOG3775|consensus	482		84.79
KOG2169|consensus	636		82.82
KOG2199|consensus	462		81.77
COG3813	84	Uncharacterized protein conserved in bacteria [Fun	80.91
PF06906	57	DUF1272: Protein of unknown function (DUF1272); In	80.29
KOG4278|consensus	1157		80.13

>KOG4348|consensus

Probab=99.67  E-value=9.7e-18  Score=126.30  Aligned_cols=41  Identities=32%  Similarity=0.694  Sum_probs=39.6

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      .++|.+..||+|.+.....++||.|.++|+.|+||+|||..
T Consensus       114 dDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVke  154 (627)
T KOG4348|consen  114 DDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKE  154 (627)
T ss_pred             CceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhcee
Confidence            78999999999999999999999999999999999999996

>KOG4225|consensus

Probab=99.63  E-value=1.8e-16  Score=119.45  Aligned_cols=74  Identities=43%  Similarity=0.855  Sum_probs=68.9

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe----------------------------
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI----------------------------  130 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~----------------------------  130 (162)
                      ++++|+     ..+|.|.+||+|.|+++.|.+|++|+.+|+.|+||+|||++                            
T Consensus       233 aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~A~y~  312 (489)
T KOG4225|consen  233 ARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAIAKYN  312 (489)
T ss_pred             hhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccccCcCCCCcccccccccccccCC
Confidence            667777     78999999999999999999999999999999999999997                            


Q ss_pred             -----------------------cCCeEEEEEC--CeEEeecCCCeEeccCC
Q psy9673         131 -----------------------DNNWFYGEVN--GTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       131 -----------------------~~~w~~g~~~--g~~g~~p~~~~~~~~~~  157 (162)
                                             |+.|++|++.  |++|+||.+||+++...
T Consensus       313 F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~  364 (489)
T KOG4225|consen  313 FNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSP  364 (489)
T ss_pred             CCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhcc
Confidence                                   8999999997  89999999999998654

>KOG4226|consensus

Probab=99.61  E-value=5.9e-16  Score=110.56  Aligned_cols=73  Identities=30%  Similarity=0.546  Sum_probs=67.5

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe---------------------------------------
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI---------------------------------------  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~---------------------------------------  130 (162)
                      +++|++.+|..+.|.++..++||+|..+|..||||+|||..                                       
T Consensus       121 eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a~n~~~s~vl~vVvaLYsF  200 (379)
T KOG4226|consen  121 EDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASASNGQGSRVLHVVVALYSF  200 (379)
T ss_pred             ccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccccccCCccceecchhhcccCCCCceEEEEEEEEecc
Confidence            88999999999999999999999999999999999999986                                       


Q ss_pred             ------------------------cCCeEEEEE-CCeEEeecCCCeEeccCCCCCCC
Q psy9673         131 ------------------------DNNWFYGEV-NGTTGAFPMSYVQFVWYLPIINK  162 (162)
Q Consensus       131 ------------------------~~~w~~g~~-~g~~g~~p~~~~~~~~~~~~~~~  162 (162)
                                              |-+||..+- .|.+|++|-|||+.+.+-|..||
T Consensus       201 sssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~ts~  257 (379)
T KOG4226|consen  201 SSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPSTSK  257 (379)
T ss_pred             cCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCccccc
Confidence                                    679999998 69999999999999988775543

>KOG4348|consensus

Probab=99.56  E-value=3.3e-16  Score=118.13  Aligned_cols=67  Identities=30%  Similarity=0.677  Sum_probs=62.3

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe---------------------------------------
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI---------------------------------------  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~---------------------------------------  130 (162)
                      .++|....|++|.-..+.+.+||+|+++|+.|.||.|||..                                       
T Consensus        15 ddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~n~l~~~q~v~rtn~   94 (627)
T KOG4348|consen   15 DDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSRNPLTVHQQVERTNP   94 (627)
T ss_pred             CceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhcccccccccccccchhhcccCCCccccCcccccCC
Confidence            57899999999998999999999999999999999999975                                       


Q ss_pred             -------------------------------------cCCeEEEEECCeEEeecCCCeEeccC
Q psy9673         131 -------------------------------------DNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       131 -------------------------------------~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                                                           .++||+|.++|++|+||+|||+.+..
T Consensus        95 ~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~  157 (627)
T KOG4348|consen   95 PPQPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPT  157 (627)
T ss_pred             CCCccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCC
Confidence                                                 78999999999999999999998854

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.51  E-value=9.1e-15  Score=77.33  Aligned_cols=40  Identities=43%  Similarity=1.155  Sum_probs=31.4

Q ss_pred             cccccccccCCCEEcccCCccchhcHHHHHhcCCC--cccccc
Q psy9673          12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKE--LRCPEC   52 (162)
Q Consensus        12 C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~--~~Cp~C   52 (162)
                      |+||+++|. +|++++|||+||..||.+++...+.  +.||.|
T Consensus         1 CpiC~~~~~-~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFK-DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-S-SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhC-CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999 9999999999999999999986433  589987

>KOG1029|consensus

Probab=99.48  E-value=5.6e-15  Score=118.03  Aligned_cols=65  Identities=35%  Similarity=0.802  Sum_probs=58.5

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEe--cCC---CCceeeeeEEe----------------------------------
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEV--NGT---TGAFPMSYVQI----------------------------------  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~--~~~---~G~~P~~~v~~----------------------------------  130 (162)
                      +..|++.+|++|.+.++.+.+||+|++  +|+   .||||++||++                                  
T Consensus       993 peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTPa~~~v~qviamYdY~AqndDELsF 1072 (1118)
T KOG1029|consen  993 PEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATPATRPVCQVIAMYDYEAQNDDELSF 1072 (1118)
T ss_pred             chhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCCCCCccceeEEeeccccCCcccccc
Confidence            678999999999999999999999996  454   49999999997                                  


Q ss_pred             ------------cCCeEEEEECCeEEeecCCCeEec
Q psy9673         131 ------------DNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       131 ------------~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                                  +-+||.|+.+|++|+||+|||+..
T Consensus      1073 ~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1073 KKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred             cCCCEEEecCCCChhhhcccccCccccCcccccccc
Confidence                        559999999999999999999554

>KOG1029|consensus

Probab=99.47  E-value=9.3e-15  Score=116.78  Aligned_cols=64  Identities=39%  Similarity=0.784  Sum_probs=58.9

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe---------------------------------------
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI---------------------------------------  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~---------------------------------------  130 (162)
                      ..+|+|..||+|.|+.+ .+.||.|+..|..||||.+||+.                                       
T Consensus       827 e~dLsFskgd~I~Vlek-qemwW~G~v~g~~GwFPksYVk~~~~~t~st~~~~s~es~sae~p~~~~~~a~~taa~v~~q  905 (1118)
T KOG1029|consen  827 ENDLSFSKGDTITVLEK-QEMWWFGEVAGEIGWFPKSYVKEVGAITGSTTKIESPESLSAEAPGAAASDATPTAAPVAPQ  905 (1118)
T ss_pred             cccccccCCCeeeeehh-ccceecccccCccCcCcHHhhhhccccccccccccCcccccccCccccccccCccccccccc
Confidence            67899999999999999 66899999999999999999993                                       


Q ss_pred             -------------------------------cCCeEEEEECCeEEeecCC-CeEec
Q psy9673         131 -------------------------------DNNWFYGEVNGTTGAFPMS-YVQFV  154 (162)
Q Consensus       131 -------------------------------~~~w~~g~~~g~~g~~p~~-~~~~~  154 (162)
                                                     |++||.|.++++.|+||+| |+.+.
T Consensus       906 eq~ya~~~~~e~vEq~dlt~~egd~iLvtekdgeww~gt~~~r~gifPan~y~r~~  961 (1118)
T KOG1029|consen  906 EQLYAVYPYFEAVEQGDLTFHEGDEILVTEKDGEWWTGTCGDREGIFPANYYVRPK  961 (1118)
T ss_pred             ceeEEEecccccccCCCccccccceEEEeeccCceeccccCCccccccccceeeeh
Confidence                                           8999999999999999999 66655

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.40  E-value=1e-13  Score=105.77  Aligned_cols=72  Identities=32%  Similarity=0.693  Sum_probs=62.4

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccce
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLV   80 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~~   80 (162)
                      ..++..+.|+||.++|. .|++++|||+||..|+..++....  .||+|+..+.  ...+..|..+.++++.+....
T Consensus        21 ~~Le~~l~C~IC~d~~~-~PvitpCgH~FCs~CI~~~l~~~~--~CP~Cr~~~~--~~~Lr~N~~L~~iVe~~~~~R   92 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFD-VPVLTSCSHTFCSLCIRRCLSNQP--KCPLCRAEDQ--ESKLRSNWLVSEIVESFKNLR   92 (397)
T ss_pred             cccccccCCCcCchhhh-CccCCCCCCchhHHHHHHHHhCCC--CCCCCCCccc--cccCccchHHHHHHHHHHHhh
Confidence            45788899999999998 888999999999999999998654  7999999887  457889999999999886533

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0287|consensus

Probab=99.39  E-value=4.2e-14  Score=103.73  Aligned_cols=72  Identities=35%  Similarity=0.742  Sum_probs=63.2

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccce
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLV   80 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~~   80 (162)
                      ..+.+.|+|.||.++|. .|+++||+|+||..||..++..+.  .||.|+.++.  ...+..|+.+..|++.+...+
T Consensus        18 k~lD~lLRC~IC~eyf~-ip~itpCsHtfCSlCIR~~L~~~p--~CP~C~~~~~--Es~Lr~n~il~Eiv~S~~~~R   89 (442)
T KOG0287|consen   18 KTLDDLLRCGICFEYFN-IPMITPCSHTFCSLCIRKFLSYKP--QCPTCCVTVT--ESDLRNNRILDEIVKSLNFAR   89 (442)
T ss_pred             hhhHHHHHHhHHHHHhc-CceeccccchHHHHHHHHHhccCC--CCCceecccc--hhhhhhhhHHHHHHHHHHHHH
Confidence            34667899999999999 999999999999999999999765  8999999998  678899999999988876533

>smart00504 Ubox Modified RING finger domain

Probab=99.39  E-value=3.1e-13  Score=78.21  Aligned_cols=61  Identities=21%  Similarity=0.429  Sum_probs=52.8

Q ss_pred             ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhh
Q psy9673           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILE   74 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e   74 (162)
                      ++.|+||.+.+. +|++++|||+||..|+.+++..+.  .||.|+..+.  ..++.+|..+++.++
T Consensus         1 ~~~Cpi~~~~~~-~Pv~~~~G~v~~~~~i~~~~~~~~--~cP~~~~~~~--~~~l~~~~~l~~~i~   61 (63)
T smart00504        1 EFLCPISLEVMK-DPVILPSGQTYERRAIEKWLLSHG--TDPVTGQPLT--HEDLIPNLALKSAIQ   61 (63)
T ss_pred             CcCCcCCCCcCC-CCEECCCCCEEeHHHHHHHHHHCC--CCCCCcCCCC--hhhceeCHHHHHHHH
Confidence            468999999999 889999999999999999998644  8999999986  567888888877665

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG4792|consensus

Probab=99.38  E-value=1.7e-13  Score=95.57  Aligned_cols=77  Identities=32%  Similarity=0.636  Sum_probs=68.2

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeEEe-------------------------
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQI-------------------------  130 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v~~-------------------------  130 (162)
                      ..++++|+     ..+|.|++|+++.+.++.++.||..+ ..|+.|++|.+||+.                         
T Consensus       125 ~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~~  204 (293)
T KOG4792|consen  125 EYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSGG  204 (293)
T ss_pred             hheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCCC
Confidence            34566776     77899999999999999999999998 689999999999986                         


Q ss_pred             --------------------------------------------------------cCCeEEEEECCeEEeecCCCeEec
Q psy9673         131 --------------------------------------------------------DNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       131 --------------------------------------------------------~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                                                                              -.+-|+|+++|+.|.||.+||+..
T Consensus       205 g~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~  284 (293)
T KOG4792|consen  205 GAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFT  284 (293)
T ss_pred             CCCCCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEee
Confidence                                                                    669999999999999999999998


Q ss_pred             cCCC
Q psy9673         155 WYLP  158 (162)
Q Consensus       155 ~~~~  158 (162)
                      .+-.
T Consensus       285 d~~~  288 (293)
T KOG4792|consen  285 DVQN  288 (293)
T ss_pred             ccCC
Confidence            6543

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.34  E-value=5.4e-13  Score=91.89  Aligned_cols=50  Identities=28%  Similarity=0.757  Sum_probs=42.8

Q ss_pred             CCccccccccccccCCCEEcccCCccchhcHHHHHhc--------------CCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS--------------HKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~--------------~~~~~Cp~Cr~~~~   57 (162)
                      .+++.|+||++.+. +|++++|||.||..||..|+..              ++...||+||..+.
T Consensus        16 ~~~~~CpICld~~~-dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is   79 (193)
T PLN03208         16 GGDFDCNICLDQVR-DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS   79 (193)
T ss_pred             CCccCCccCCCcCC-CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence            46789999999998 8899999999999999999752              12358999999886

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.28  E-value=1.4e-12  Score=70.00  Aligned_cols=41  Identities=37%  Similarity=1.042  Sum_probs=35.4

Q ss_pred             cccccccccc--CCCEEcccCCccchhcHHHHHhcCCCccccccc
Q psy9673          11 ECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR   53 (162)
Q Consensus        11 ~C~iC~~~~~--~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr   53 (162)
                      .|+||++.+.  +.++.++|+|.||..|+.+|+..+.  .||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~--~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN--SCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS--B-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC--cCCccC
Confidence            5999999994  3678889999999999999999755  899997

...

>KOG1118|consensus

Probab=99.28  E-value=1.4e-12  Score=94.70  Aligned_cols=61  Identities=33%  Similarity=0.643  Sum_probs=49.2

Q ss_pred             cccceeeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCC
Q psy9673          76 LFPLVVSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSY  150 (162)
Q Consensus        76 ~~~~~~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~  150 (162)
                      +.....++++++|+     ..+|.|..||+|.+.+.+|+                       +||+|+..|++|+||.||
T Consensus       301 ~s~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIde-----------------------nWyeG~~~g~sG~FPvnY  357 (366)
T KOG1118|consen  301 ASQMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDE-----------------------NWYEGEKHGESGMFPVNY  357 (366)
T ss_pred             cCcccchhheeeeccCCCCCCccCcccCceeeehhhcCc-----------------------chhhheecCccCccccce
Confidence            34455778999998     78999999999999988665                       667777778888888888


Q ss_pred             eEeccCCCC
Q psy9673         151 VQFVWYLPI  159 (162)
Q Consensus       151 ~~~~~~~~~  159 (162)
                      |+++.+++.
T Consensus       358 v~vlvpl~~  366 (366)
T KOG1118|consen  358 VEVLVPLPQ  366 (366)
T ss_pred             eEEeccCCC
Confidence            888888763

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.27  E-value=5.1e-12  Score=69.23  Aligned_cols=39  Identities=44%  Similarity=0.894  Sum_probs=27.3

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV  128 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v  128 (162)
                      .++|+|.+||+|.++.+.+++||.|+.+|+.|+||++||
T Consensus        10 ~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV   48 (49)
T PF14604_consen   10 PDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYV   48 (49)
T ss_dssp             TTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGE
T ss_pred             cCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhC
Confidence            679999999999999887776666665555555555555

...

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=99.27  E-value=1.3e-12  Score=94.20  Aligned_cols=70  Identities=26%  Similarity=0.444  Sum_probs=61.5

Q ss_pred             CCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccce
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLV   80 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~~   80 (162)
                      |...+.|-||.++|. .|..++|||+||..||.+++..+.  .||+||.+..  ...++.+..+..+++.+...+
T Consensus        22 LDs~lrC~IC~~~i~-ip~~TtCgHtFCslCIR~hL~~qp--~CP~Cr~~~~--esrlr~~s~~~ei~es~~~~r   91 (391)
T COG5432          22 LDSMLRCRICDCRIS-IPCETTCGHTFCSLCIRRHLGTQP--FCPVCREDPC--ESRLRGSSGSREINESHARNR   91 (391)
T ss_pred             chhHHHhhhhhheee-cceecccccchhHHHHHHHhcCCC--CCccccccHH--hhhcccchhHHHHHHhhhhcc
Confidence            456789999999999 999999999999999999999766  8999999886  568888888888888887655

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.25  E-value=3.6e-12  Score=66.52  Aligned_cols=38  Identities=45%  Similarity=1.225  Sum_probs=32.0

Q ss_pred             cccccccccCCC-EEcccCCccchhcHHHHHhcCCCcccccc
Q psy9673          12 CSVCLDRLDTSS-KVLPCQHTFCKKCLEEIVSSHKELRCPEC   52 (162)
Q Consensus        12 C~iC~~~~~~~p-~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~C   52 (162)
                      |+||++.+. +| +.++|||+||..|+.++++.+  ..||.|
T Consensus         1 C~iC~~~~~-~~~~~~~CGH~fC~~C~~~~~~~~--~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELR-DPVVVTPCGHSFCKECIEKYLEKN--PKCPVC   39 (39)
T ss_dssp             ETTTTSB-S-SEEEECTTSEEEEHHHHHHHHHCT--SB-TTT
T ss_pred             CCCCCCccc-CcCEECCCCCchhHHHHHHHHHCc--CCCcCC
Confidence            899999999 56 789999999999999999873  489987

>KOG4226|consensus

Probab=99.24  E-value=1.1e-11  Score=88.99  Aligned_cols=68  Identities=28%  Similarity=0.512  Sum_probs=57.9

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeEEe--------------------------------------
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQI--------------------------------------  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v~~--------------------------------------  130 (162)
                      .++|.++..+.+-+++. ...||+.+ ..++.|++|+|||+.                                      
T Consensus        18 ~qeldikkner~~lldd-sk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k~s~~~~~~sp~~d~   96 (379)
T KOG4226|consen   18 DQELDIKKNERLWLLDD-SKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRKTSARDASPSPSTDA   96 (379)
T ss_pred             chhccccccceEEEEcC-CccceeeecccccCCcccchhhhcccchhhhHHHHhhhhccccccccCCCccccCCCCCccc
Confidence            66888888888877766 44788887 567899999999995                                      


Q ss_pred             ------------------------------------------cCCeEEEEECCeEEeecCCCeEeccCCC
Q psy9673         131 ------------------------------------------DNNWFYGEVNGTTGAFPMSYVQFVWYLP  158 (162)
Q Consensus       131 ------------------------------------------~~~w~~g~~~g~~g~~p~~~~~~~~~~~  158 (162)
                                                                .++||.|+.+|.+|+||+|||....+.+
T Consensus        97 ~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~  166 (379)
T KOG4226|consen   97 EYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSA  166 (379)
T ss_pred             cCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhcccc
Confidence                                                      7899999999999999999999887654

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=99.23  E-value=1.3e-12  Score=73.61  Aligned_cols=62  Identities=31%  Similarity=0.769  Sum_probs=34.1

Q ss_pred             cCCCccccccccccccCCCE-EcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhh
Q psy9673           5 TLNDLLECSVCLDRLDTSSK-VLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRIL   73 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~-~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~   73 (162)
                      .++..+.|++|.+++. .|+ +..|.|.||..|+.+.+..    .||+|..+.-  .+++..|..+.+|+
T Consensus         3 ~le~lLrCs~C~~~l~-~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~Paw--~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    3 RLEELLRCSICFDILK-EPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTPAW--IQDIQINRQLDSMI   65 (65)
T ss_dssp             HHHHTTS-SSS-S--S-S-B---SSS--B-TTTGGGGTTT----B-SSS--B-S---SS----HHHHHHH
T ss_pred             HHHHhcCCcHHHHHhc-CCceeccCccHHHHHHhHHhcCC----CCCCcCChHH--HHHHHhhhhhhccC
Confidence            4567899999999999 664 6789999999999875542    5999999886  67888998887664

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.22  E-value=6e-12  Score=66.46  Aligned_cols=40  Identities=35%  Similarity=1.154  Sum_probs=35.5

Q ss_pred             cccccccccCCCE-EcccCCccchhcHHHHHhcCCCcccccc
Q psy9673          12 CSVCLDRLDTSSK-VLPCQHTFCKKCLEEIVSSHKELRCPEC   52 (162)
Q Consensus        12 C~iC~~~~~~~p~-~~~C~H~fC~~Cl~~~~~~~~~~~Cp~C   52 (162)
                      |+||++.+. .+. +++|||+||..|+.+++...+...||.|
T Consensus         1 C~iC~~~~~-~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFE-DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCS-SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCcccc-CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999 656 9999999999999999996566789987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.21  E-value=9.2e-12  Score=68.58  Aligned_cols=47  Identities=36%  Similarity=0.967  Sum_probs=39.3

Q ss_pred             CccccccccccccCCCEEcccCCc-cchhcHHHHHhcCCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~C~H~-fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ++..|.||++... .++.++|||. ||..|+.+++....  .||+||+++.
T Consensus         1 ~~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~--~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPR-DVVLLPCGHLCFCEECAERLLKRKK--KCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBS-SEEEETTCEEEEEHHHHHHHHHTTS--BBTTTTBB-S
T ss_pred             CcCCCccCCccCC-ceEEeCCCChHHHHHHhHHhcccCC--CCCcCChhhc
Confidence            3678999999988 7899999999 99999999998444  8999999875

...

>KOG4225|consensus

Probab=99.20  E-value=1.1e-11  Score=94.01  Aligned_cols=47  Identities=34%  Similarity=0.710  Sum_probs=41.8

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEec--CCCCceeeeeEEe
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVN--GTTGAFPMSYVQI  130 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~--~~~G~~P~~~v~~  130 (162)
                      +.+.|+     ..++++++|+.|.++.+.+.+|++|...  ++.|+||.+||++
T Consensus       307 a~A~y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev  360 (489)
T KOG4225|consen  307 AIAKYNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEV  360 (489)
T ss_pred             ccccCCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhh
Confidence            556666     6789999999999999999999999977  6789999999997

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.19  E-value=1.4e-11  Score=88.35  Aligned_cols=49  Identities=24%  Similarity=0.729  Sum_probs=40.5

Q ss_pred             CCccccccccccccCC-------CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTS-------SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~-------p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .++.+|+||++.+..+       +++++|+|.||..|+.+|+..+.  .||+||..+.
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~--tCPlCR~~~~  227 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN--TCPVCRTPFI  227 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC--CCCCCCCEee
Confidence            3468999999987633       25668999999999999998655  8999999875

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.18  E-value=9.6e-12  Score=73.93  Aligned_cols=67  Identities=21%  Similarity=0.319  Sum_probs=53.5

Q ss_pred             CccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhcccc
Q psy9673           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~   78 (162)
                      +.|.|+|+.+++. +|+++++||+|+..+|.+|+... ...||.++..+.  ...+.+|..++..++.+..
T Consensus         3 ~~f~CpIt~~lM~-dPVi~~~G~tyer~~I~~~l~~~-~~~~P~t~~~l~--~~~l~pn~~Lk~~I~~~~~   69 (73)
T PF04564_consen    3 DEFLCPITGELMR-DPVILPSGHTYERSAIERWLEQN-GGTDPFTRQPLS--ESDLIPNRALKSAIEEWCA   69 (73)
T ss_dssp             GGGB-TTTSSB-S-SEEEETTSEEEEHHHHHHHHCTT-SSB-TTT-SB-S--GGGSEE-HHHHHHHHHHHH
T ss_pred             cccCCcCcCcHhh-CceeCCcCCEEcHHHHHHHHHcC-CCCCCCCCCcCC--cccceECHHHHHHHHHHHH
Confidence            5789999999999 99999999999999999999972 348999999988  6689999999998887754

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0823|consensus

Probab=99.13  E-value=2.1e-11  Score=85.56  Aligned_cols=49  Identities=31%  Similarity=0.793  Sum_probs=42.8

Q ss_pred             CccccccccccccCCCEEcccCCccchhcHHHHHhcC-CCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH-KELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~-~~~~Cp~Cr~~~~   57 (162)
                      ..+.|.||++.-+ +|+++.|||.||.-||.+|+..+ ....||+|+..++
T Consensus        46 ~~FdCNICLd~ak-dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   46 GFFDCNICLDLAK-DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS   95 (230)
T ss_pred             CceeeeeeccccC-CCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence            4678999999999 99999999999999999999854 3457899999775

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=99.13  E-value=2.2e-11  Score=64.36  Aligned_cols=38  Identities=39%  Similarity=1.142  Sum_probs=22.7

Q ss_pred             cccccccccC---CCEEcccCCccchhcHHHHHhcC--CCcccc
Q psy9673          12 CSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSH--KELRCP   50 (162)
Q Consensus        12 C~iC~~~~~~---~p~~~~C~H~fC~~Cl~~~~~~~--~~~~Cp   50 (162)
                      |+||.+ +.+   .|++++|||+||..|+.++...+  +.+.||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 752   38999999999999999988854  456776

>KOG0317|consensus

Probab=99.12  E-value=2.7e-11  Score=87.48  Aligned_cols=48  Identities=33%  Similarity=0.805  Sum_probs=43.6

Q ss_pred             CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +....|.+|++... .|.-+||||.||..||..|...+.  .||+||..++
T Consensus       237 ~a~~kC~LCLe~~~-~pSaTpCGHiFCWsCI~~w~~ek~--eCPlCR~~~~  284 (293)
T KOG0317|consen  237 EATRKCSLCLENRS-NPSATPCGHIFCWSCILEWCSEKA--ECPLCREKFQ  284 (293)
T ss_pred             CCCCceEEEecCCC-CCCcCcCcchHHHHHHHHHHcccc--CCCcccccCC
Confidence            45678999999999 889999999999999999999776  6999999886

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=99.09  E-value=5.7e-11  Score=63.57  Aligned_cols=42  Identities=33%  Similarity=1.081  Sum_probs=35.3

Q ss_pred             ccccccccc--cCCCEEcccCCccchhcHHHHHhcCCCcccccccc
Q psy9673          11 ECSVCLDRL--DTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRV   54 (162)
Q Consensus        11 ~C~iC~~~~--~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~   54 (162)
                      .|++|.+.+  ...+.+++|||+||..|+....  .....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence            489999999  3368999999999999999877  34458999974

>KOG2199|consensus

Probab=99.07  E-value=2e-11  Score=91.56  Aligned_cols=48  Identities=33%  Similarity=0.607  Sum_probs=33.8

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV  128 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v  128 (162)
                      ..+++++||     ..||+|+.||+|.|++..+.+||.|+..+..|+||+|||
T Consensus       215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfV  267 (462)
T KOG2199|consen  215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFV  267 (462)
T ss_pred             chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhh
Confidence            456788998     889999999999999997775544444444444444433

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.05  E-value=3.5e-10  Score=63.50  Aligned_cols=40  Identities=45%  Similarity=0.804  Sum_probs=24.8

Q ss_pred             cceeeccCCCEEEEe-EecCCCeEEEEecCCCCceeeeeEE
Q psy9673          90 ILDLNFKKDDIVILR-RKIDNNWFYGEVNGTTGAFPMSYVQ  129 (162)
Q Consensus        90 ~~el~~~~gd~i~v~-~~~~~~w~~g~~~~~~G~~P~~~v~  129 (162)
                      +.+|+|++||+|.+. ++.+++||.|+.+|+.|+||.+||+
T Consensus        13 ~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~   53 (55)
T PF07653_consen   13 PDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVE   53 (55)
T ss_dssp             TTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEE
Confidence            678999999999998 6656555555554444444444443

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG2070|consensus

Probab=99.04  E-value=1.8e-10  Score=88.74  Aligned_cols=41  Identities=34%  Similarity=0.707  Sum_probs=38.8

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      .++|+|.+||+|.|....+.|||+|+++|+.||||+|||..
T Consensus        31 nDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~e   71 (661)
T KOG2070|consen   31 NDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVRE   71 (661)
T ss_pred             CceeccccCCEEEEEEeccCcceeccccCccCccchHHHHH
Confidence            88999999999999999999999999999999999999974

>KOG0320|consensus

Probab=99.02  E-value=1.2e-10  Score=78.63  Aligned_cols=50  Identities=26%  Similarity=0.842  Sum_probs=41.2

Q ss_pred             CCCccccccccccccCC-CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDTS-SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~-p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      -+....||||++-+... |+.+.|||.||..||++.+....  .||+|++-+.
T Consensus       128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~--~CP~C~kkIt  178 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN--KCPTCRKKIT  178 (187)
T ss_pred             cccccCCCceecchhhccccccccchhHHHHHHHHHHHhCC--CCCCcccccc
Confidence            34567899999999743 46689999999999999998665  8999998554

>PHA02926 zinc finger-like protein; Provisional

Probab=98.99  E-value=2.3e-10  Score=80.05  Aligned_cols=51  Identities=24%  Similarity=0.649  Sum_probs=40.1

Q ss_pred             CCccccccccccccCC--------CEEcccCCccchhcHHHHHhcCC----Cccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTS--------SKVLPCQHTFCKKCLEEIVSSHK----ELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~--------p~~~~C~H~fC~~Cl~~~~~~~~----~~~Cp~Cr~~~~   57 (162)
                      .++..|+||++....+        .++.+|+|+||..|+..|...+.    ...||+||..+.
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            3578999999987422        35668999999999999997531    347999999875

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.98  E-value=3.5e-10  Score=60.43  Aligned_cols=44  Identities=36%  Similarity=1.024  Sum_probs=35.0

Q ss_pred             ccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccc
Q psy9673          11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVL   55 (162)
Q Consensus        11 ~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~   55 (162)
                      .|+||.+.+.......+|||.||..|+.+|+.. +...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence            489999999634444459999999999999886 33479999875

>KOG2996|consensus

Probab=98.95  E-value=3.8e-10  Score=88.63  Aligned_cols=40  Identities=25%  Similarity=0.464  Sum_probs=31.5

Q ss_pred             ceeeccCCCEEEEeEecCC-CeEEEEec--CCCCceeeeeEEe
Q psy9673          91 LDLNFKKDDIVILRRKIDN-NWFYGEVN--GTTGAFPMSYVQI  130 (162)
Q Consensus        91 ~el~~~~gd~i~v~~~~~~-~w~~g~~~--~~~G~~P~~~v~~  130 (162)
                      ..+.++.||++.++...+. .||.|+..  +..|+||++-|.+
T Consensus       625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp  667 (865)
T KOG2996|consen  625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKP  667 (865)
T ss_pred             CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCc
Confidence            4678999999988776554 79999954  4579999987775

>KOG2177|consensus

Probab=98.90  E-value=3.8e-10  Score=84.50  Aligned_cols=70  Identities=39%  Similarity=0.796  Sum_probs=58.0

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccce
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLV   80 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~~   80 (162)
                      ..+.+++.|+||+++|. +|++++|+|+||..|+...+.  ....||.||. ..   ..+..|..+..+++.+....
T Consensus         8 ~~~~~~~~C~iC~~~~~-~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~-~~---~~~~~n~~l~~~~~~~~~~~   77 (386)
T KOG2177|consen    8 EVLQEELTCPICLEYFR-EPVLLPCGHNFCRACLTRSWE--GPLSCPVCRP-PS---RNLRPNVLLANLVERLRQLR   77 (386)
T ss_pred             hhccccccChhhHHHhh-cCccccccchHhHHHHHHhcC--CCcCCcccCC-ch---hccCccHHHHHHHHHHHhcC
Confidence            44578999999999999 779999999999999999887  4468999996 33   26668888888888877654

>smart00184 RING Ring finger

Probab=98.85  E-value=2e-09  Score=55.53  Aligned_cols=39  Identities=44%  Similarity=1.155  Sum_probs=33.1

Q ss_pred             cccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccc
Q psy9673          12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC   52 (162)
Q Consensus        12 C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~C   52 (162)
                      |+||++... .++.++|+|.||..|+..|+.. ....||.|
T Consensus         1 C~iC~~~~~-~~~~~~C~H~~c~~C~~~~~~~-~~~~CP~C   39 (39)
T smart00184        1 CPICLEELK-DPVVLPCGHTFCRSCIRKWLKS-GNNTCPIC   39 (39)
T ss_pred             CCcCccCCC-CcEEecCCChHHHHHHHHHHHh-CcCCCCCC
Confidence            789999976 8899999999999999999873 33479886

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.83  E-value=2.4e-09  Score=63.55  Aligned_cols=41  Identities=29%  Similarity=0.826  Sum_probs=32.7

Q ss_pred             ccccccccccC------------CCEEcccCCccchhcHHHHHhcCCCccccccc
Q psy9673          11 ECSVCLDRLDT------------SSKVLPCQHTFCKKCLEEIVSSHKELRCPECR   53 (162)
Q Consensus        11 ~C~iC~~~~~~------------~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr   53 (162)
                      .|+||++.|.+            .....+|||.|+..||.+|+..+.  .||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~--~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN--TCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS--B-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC--cCCCCC
Confidence            49999999931            124557999999999999998666  899997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG2164|consensus

Probab=98.79  E-value=2.2e-09  Score=83.27  Aligned_cols=48  Identities=25%  Similarity=0.666  Sum_probs=41.4

Q ss_pred             ccccccccccccCCCEEcccCCccchhcHHHHHhcC---CCccccccccccc
Q psy9673           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH---KELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~---~~~~Cp~Cr~~~~   57 (162)
                      +..||||++... -|..+.|||.||..||..++...   +...||+|+..+.
T Consensus       186 ~~~CPICL~~~~-~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~  236 (513)
T KOG2164|consen  186 DMQCPICLEPPS-VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT  236 (513)
T ss_pred             CCcCCcccCCCC-cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence            789999999998 67777899999999999998753   3468999999876

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=5.2e-09  Score=78.28  Aligned_cols=48  Identities=33%  Similarity=0.785  Sum_probs=41.7

Q ss_pred             CCccccccccccccC------------CCEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673           7 NDLLECSVCLDRLDT------------SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV   56 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~------------~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~   56 (162)
                      .+|..|.||++.+.-            .|+.++|||.++..|++.|++.++  +||.||.++
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ--TCPICr~p~  344 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ--TCPICRRPV  344 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc--CCCcccCcc
Confidence            567889999999531            258999999999999999999877  899999985

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=98.71  E-value=2.6e-08  Score=54.41  Aligned_cols=34  Identities=35%  Similarity=0.788  Sum_probs=26.9

Q ss_pred             CCCceeeeeEEecCCeEEEEECCeEEeecCCCeE
Q psy9673         119 TTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQ  152 (162)
Q Consensus       119 ~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~  152 (162)
                      +.|-+-...-+.+++||.|+.+|+.|+||++|||
T Consensus        16 ~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen   16 KKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             -TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             cCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            3455444444569999999999999999999997

...

>KOG4628|consensus

Probab=98.67  E-value=1.1e-08  Score=76.85  Aligned_cols=47  Identities=26%  Similarity=0.817  Sum_probs=40.4

Q ss_pred             cccccccccccC--CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673          10 LECSVCLDRLDT--SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        10 l~C~iC~~~~~~--~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..|+||+|.|..  ..+.|||.|.|+..|+..|+...+ ..||+|+..+.
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r-~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR-TFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcC-ccCCCCCCcCC
Confidence            489999999953  578899999999999999999764 26999999764

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=9.1e-09  Score=73.73  Aligned_cols=50  Identities=32%  Similarity=0.630  Sum_probs=40.8

Q ss_pred             CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..+..|+||++... .|..++|||.||..||...+..++.-.||+||+-..
T Consensus       213 ~~d~kC~lC~e~~~-~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         213 LADYKCFLCLEEPE-VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccccceeeeecccC-CcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence            35788999999999 889999999999999998444434345999999654

>KOG3601|consensus

Probab=98.64  E-value=5.7e-09  Score=72.50  Aligned_cols=41  Identities=27%  Similarity=0.551  Sum_probs=34.3

Q ss_pred             cceeeccCCCEEEEeEecCC-CeEEEEecCCCCceeeeeEEe
Q psy9673          90 ILDLNFKKDDIVILRRKIDN-NWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~-~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ..||.|.+|+++.+++..++ +|+..++.|..|++|.||.+.
T Consensus        14 ~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~   55 (222)
T KOG3601|consen   14 RDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM   55 (222)
T ss_pred             cccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence            56899999998888887766 788899999999999988843

>KOG2996|consensus

Probab=98.63  E-value=2.8e-08  Score=78.40  Aligned_cols=49  Identities=35%  Similarity=0.651  Sum_probs=33.7

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCC--CeEEEEecCCCCceeeeeEEec
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDN--NWFYGEVNGTTGAFPMSYVQID  131 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~--~w~~g~~~~~~G~~P~~~v~~~  131 (162)
                      .+.+-|+     ..+|++..||++.++++...  |||.|+.+|+.||||++||+.+
T Consensus       807 ~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~  862 (865)
T KOG2996|consen  807 TAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEED  862 (865)
T ss_pred             eeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCccccccccccccc
Confidence            3455566     66899999999999888653  5666666666666666666543

>smart00326 SH3 Src homology 3 domains

Probab=98.61  E-value=8.5e-08  Score=53.72  Aligned_cols=40  Identities=40%  Similarity=0.819  Sum_probs=30.9

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEec-CCCCceeeeeEE
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVN-GTTGAFPMSYVQ  129 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~-~~~G~~P~~~v~  129 (162)
                      ..++.+.+||.+.+....+.+||.++.. ++.|+||.+|++
T Consensus        16 ~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   56 (58)
T smart00326       16 PDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE   56 (58)
T ss_pred             CCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEE
Confidence            6789999999999998877777777655 666666666654

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=98.61  E-value=6.6e-08  Score=52.58  Aligned_cols=36  Identities=33%  Similarity=0.554  Sum_probs=29.4

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEec--CCCCceee
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVN--GTTGAFPM  125 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~--~~~G~~P~  125 (162)
                      ..+|+|.+||.+.|+++.+++||.++..  ++.|+||+
T Consensus        11 ~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen   11 PDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             TTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            7899999999999999999888888864  46677774

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.60  E-value=3.5e-08  Score=73.05  Aligned_cols=48  Identities=27%  Similarity=0.605  Sum_probs=36.5

Q ss_pred             cccccccccc--ccCCC--EEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           9 LLECSVCLDR--LDTSS--KVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~--~~~~p--~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +-.||+|...  +...-  .+.+|||.||..|+.+.+.. +...||.|+.++.
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lr   54 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLR   54 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccc
Confidence            4679999994  44221  33379999999999998765 3358999999886

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2660|consensus

Probab=98.57  E-value=1.4e-08  Score=74.95  Aligned_cols=69  Identities=26%  Similarity=0.616  Sum_probs=51.7

Q ss_pred             cCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccccc--ccCCCcchhhhhhhhc
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECK--VDELPPNVLLMRILEG   75 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~--~~~l~~n~~l~~i~e~   75 (162)
                      .+.....|.+|.++|.++..+..|-|+||..||.+++....  .||.|...+-..  ...+.....++.|+-.
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~--~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK   81 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESK--YCPTCDIVIHKTHPLLNIRSDRTLQDIVYK   81 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhc--cCCccceeccCccccccCCcchHHHHHHHH
Confidence            34677899999999996666677999999999999998744  899999976311  3455555565555433

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=98.53  E-value=1.7e-07  Score=51.71  Aligned_cols=40  Identities=40%  Similarity=0.767  Sum_probs=30.7

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecC-CCCceeeeeEE
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNG-TTGAFPMSYVQ  129 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~-~~G~~P~~~v~  129 (162)
                      ..++.+.+||.+.+....+++||.++..+ +.|+||.+|++
T Consensus        13 ~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174          13 PDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             CCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            56889999999999988777777777554 66676666654

>KOG0311|consensus

Probab=98.49  E-value=1.2e-08  Score=75.81  Aligned_cols=53  Identities=26%  Similarity=0.619  Sum_probs=42.9

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..+.-++.|+||++++...-.+..|+|.||..||...+...+ ..||.||+.+.
T Consensus        38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn-~ecptcRk~l~   90 (381)
T KOG0311|consen   38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN-NECPTCRKKLV   90 (381)
T ss_pred             HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC-CCCchHHhhcc
Confidence            446678999999999984444556999999999988877644 48999999874

>KOG3632|consensus

Probab=98.49  E-value=1.1e-07  Score=78.88  Aligned_cols=66  Identities=29%  Similarity=0.637  Sum_probs=59.8

Q ss_pred             cceeeccCCCEEEEeEecC-CCeEEEEecCCCCceeeeeEEe--------------------------------------
Q psy9673          90 ILDLNFKKDDIVILRRKID-NNWFYGEVNGTTGAFPMSYVQI--------------------------------------  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~-~~w~~g~~~~~~G~~P~~~v~~--------------------------------------  130 (162)
                      ..+|.|+.|++|.|....| ++++.|+.+|+.|.||.|+|..                                      
T Consensus      1160 EeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~rqG~lPsv~~~e~~~gs~~s~g~~k~ 1239 (1335)
T KOG3632|consen 1160 EEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRWRQGLLPSVPTEEMRKGSAFSDGQQKM 1239 (1335)
T ss_pred             hhccccccCcEEEEeccccccceeecccccccccccccccccccCCcHHHHHHHHhccCCCCCchhhhcccccCCCCccc
Confidence            6789999999998876655 5899999999999999999986                                      


Q ss_pred             --------------------------------------------cCCeEEEEECCeEEeecCCCeEecc
Q psy9673         131 --------------------------------------------DNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus       131 --------------------------------------------~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                                                                  +++.+.|+++|+.|++|++|++...
T Consensus      1240 vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngqkglvpsnfle~p~ 1308 (1335)
T KOG3632|consen 1240 VPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQKGLVPSNFLEAPN 1308 (1335)
T ss_pred             cCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCccCccccccccCCC
Confidence                                                        8899999999999999999999874

>KOG4159|consensus

Probab=98.47  E-value=6.7e-08  Score=74.33  Aligned_cols=51  Identities=33%  Similarity=0.762  Sum_probs=43.9

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..+..++.|.||...+. +|++++|||+||..||.+.+...  ..||.||..+.
T Consensus        79 ~~~~sef~c~vc~~~l~-~pv~tpcghs~c~~Cl~r~ld~~--~~cp~Cr~~l~  129 (398)
T KOG4159|consen   79 EEIRSEFECCVCSRALY-PPVVTPCGHSFCLECLDRSLDQE--TECPLCRDELV  129 (398)
T ss_pred             ccccchhhhhhhHhhcC-CCccccccccccHHHHHHHhccC--CCCcccccccc
Confidence            34467899999999999 88999999999999999977643  48999999875

>KOG0802|consensus

Probab=98.46  E-value=5.3e-08  Score=78.54  Aligned_cols=47  Identities=34%  Similarity=0.849  Sum_probs=41.8

Q ss_pred             CccccccccccccCC----CEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673           8 DLLECSVCLDRLDTS----SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV   56 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~----p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~   56 (162)
                      .+..|+||.+.+...    +..++|+|.||..|+.+|++..+  +||.||..+
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q--tCP~CR~~~  340 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ--TCPTCRTVL  340 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC--cCCcchhhh
Confidence            477899999999843    89999999999999999999866  899999954

>KOG0978|consensus

Probab=98.45  E-value=2.4e-08  Score=80.92  Aligned_cols=56  Identities=27%  Similarity=0.791  Sum_probs=45.6

Q ss_pred             cCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCC
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP   64 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~   64 (162)
                      .++..|.|++|..-.. +.+++.|+|.||..|+...+...+ ..||.|.+.|.  +.++.
T Consensus       639 ~yK~~LkCs~Cn~R~K-d~vI~kC~H~FC~~Cvq~r~etRq-RKCP~Cn~aFg--anDv~  694 (698)
T KOG0978|consen  639 EYKELLKCSVCNTRWK-DAVITKCGHVFCEECVQTRYETRQ-RKCPKCNAAFG--ANDVH  694 (698)
T ss_pred             HHHhceeCCCccCchh-hHHHHhcchHHHHHHHHHHHHHhc-CCCCCCCCCCC--ccccc
Confidence            4567899999998888 778899999999999998776533 37999999997  44443

>KOG0162|consensus

Probab=98.44  E-value=1.1e-07  Score=76.81  Aligned_cols=48  Identities=33%  Similarity=0.703  Sum_probs=43.4

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ  129 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~  129 (162)
                      +.++++|+     .++|+|..|++|.+..++.++||.|.++|++||||.+||.
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~ 1104 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVT 1104 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCccccccccccc
Confidence            56788888     7899999999999999999999999999999999999885

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=2.2e-07  Score=68.00  Aligned_cols=47  Identities=30%  Similarity=0.842  Sum_probs=39.0

Q ss_pred             ccccccccccc--CCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673          10 LECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        10 l~C~iC~~~~~--~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .+|+||++.|.  ++-+++||.|.|+..|+..|+...+ ..||+||.+++
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~-~~CPvCrt~iP  372 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS-NKCPVCRTAIP  372 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc-ccCCccCCCCC
Confidence            57999999994  2578899999999999999998422 26999998765

>KOG2856|consensus

Probab=98.23  E-value=2.2e-07  Score=69.63  Aligned_cols=47  Identities=28%  Similarity=0.528  Sum_probs=31.8

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCC-CeEEEEec-CCCCceeeeeE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDN-NWFYGEVN-GTTGAFPMSYV  128 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~-~w~~g~~~-~~~G~~P~~~v  128 (162)
                      ..++++|+     .++|+|+.||.+..+...|+ +|..|+++ |+.|++|+|||
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYV  468 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYV  468 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhh
Confidence            56788998     88999999999977766665 55555544 44444444444

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.22  E-value=1.1e-06  Score=52.89  Aligned_cols=50  Identities=24%  Similarity=0.512  Sum_probs=38.1

Q ss_pred             CccccccccccccC-----------CC-EEcccCCccchhcHHHHHhcC-CCccccccccccc
Q psy9673           8 DLLECSVCLDRLDT-----------SS-KVLPCQHTFCKKCLEEIVSSH-KELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~-----------~p-~~~~C~H~fC~~Cl~~~~~~~-~~~~Cp~Cr~~~~   57 (162)
                      ++-.|.||...|..           -| +.-.|+|.|+..||.+|++++ +...||+||++.+
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            46678888888852           13 333699999999999999864 2359999999765

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=98.22  E-value=2.7e-06  Score=47.55  Aligned_cols=36  Identities=36%  Similarity=0.652  Sum_probs=27.5

Q ss_pred             CCCceeeee-EEecCCeEEEEECCeEEeecCCCeEec
Q psy9673         119 TTGAFPMSY-VQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       119 ~~G~~P~~~-v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      +.|-+-.-+ -+.+++||.|+.+|+.|+||++||+++
T Consensus        19 ~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen   19 KKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI   55 (55)
T ss_dssp             -TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred             ecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence            345444444 345789999999999999999999973

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG2879|consensus

Probab=98.21  E-value=9.4e-07  Score=63.86  Aligned_cols=51  Identities=27%  Similarity=0.561  Sum_probs=41.5

Q ss_pred             CCCccccccccccccCCCEEc-ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ...+.+|++|.+.-. -|.+. +|||.||+.|+........++.||.|+.+..
T Consensus       236 ~t~~~~C~~Cg~~Pt-iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPT-IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCC-CCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            456778999998887 55554 5999999999998887666789999988654

>KOG0824|consensus

Probab=98.21  E-value=5.3e-07  Score=65.95  Aligned_cols=47  Identities=26%  Similarity=0.651  Sum_probs=40.0

Q ss_pred             ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .-+|+||+..-. .|+.+.|+|.||+.||+...... ...|++||.++.
T Consensus         7 ~~eC~IC~nt~n-~Pv~l~C~HkFCyiCiKGsy~nd-k~~CavCR~pid   53 (324)
T KOG0824|consen    7 KKECLICYNTGN-CPVNLYCFHKFCYICIKGSYKND-KKTCAVCRFPID   53 (324)
T ss_pred             CCcceeeeccCC-cCccccccchhhhhhhcchhhcC-CCCCceecCCCC
Confidence            457999999998 88999999999999999766543 247999999986

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=98.21  E-value=3.4e-07  Score=63.07  Aligned_cols=46  Identities=24%  Similarity=0.571  Sum_probs=40.0

Q ss_pred             ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .+.|.||...|. .|+++.|||.||..|..+-++...  .|-+|.+...
T Consensus       196 PF~C~iCKkdy~-spvvt~CGH~FC~~Cai~~y~kg~--~C~~Cgk~t~  241 (259)
T COG5152         196 PFLCGICKKDYE-SPVVTECGHSFCSLCAIRKYQKGD--ECGVCGKATY  241 (259)
T ss_pred             ceeehhchhhcc-chhhhhcchhHHHHHHHHHhccCC--cceecchhhc
Confidence            467999999999 899999999999999988777544  8999988654

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.15  E-value=8.4e-07  Score=49.84  Aligned_cols=44  Identities=25%  Similarity=0.530  Sum_probs=30.6

Q ss_pred             CCccccccccccccCCCEE-cccCCccchhcHHHHHhcCCCccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKV-LPCQHTFCKKCLEEIVSSHKELRCPE   51 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~-~~C~H~fC~~Cl~~~~~~~~~~~Cp~   51 (162)
                      ...+.|||.+..|. +|+. ..|+|+|-...|..+++..+...||+
T Consensus         9 ~~~~~CPiT~~~~~-~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFE-DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-S-SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhh-CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            45688999999999 5555 58999999999999996666779998

>KOG1039|consensus

Probab=98.08  E-value=9.9e-07  Score=66.72  Aligned_cols=50  Identities=26%  Similarity=0.765  Sum_probs=39.7

Q ss_pred             CccccccccccccCCC-------EEcccCCccchhcHHHHHhcCC-----Cccccccccccc
Q psy9673           8 DLLECSVCLDRLDTSS-------KVLPCQHTFCKKCLEEIVSSHK-----ELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p-------~~~~C~H~fC~~Cl~~~~~~~~-----~~~Cp~Cr~~~~   57 (162)
                      .+..|.||++.....+       ++.+|.|+||..|+..|....+     +..||.||....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            4778999999997333       2256999999999999986544     479999999764

>KOG2070|consensus

Probab=98.00  E-value=3.3e-06  Score=65.77  Aligned_cols=36  Identities=31%  Similarity=0.601  Sum_probs=28.8

Q ss_pred             CCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673         119 TTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       119 ~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..|.+-..--..+++||+|-++|+.|+||+|||..+
T Consensus        37 ~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~ei   72 (661)
T KOG2070|consen   37 SKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREI   72 (661)
T ss_pred             ccCCEEEEEEeccCcceeccccCccCccchHHHHHH
Confidence            345555444446999999999999999999999876

>KOG1843|consensus

Probab=97.95  E-value=4.3e-06  Score=63.63  Aligned_cols=46  Identities=37%  Similarity=0.714  Sum_probs=30.3

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCC--CeEEEEecCCCCceeeeeE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDN--NWFYGEVNGTTGAFPMSYV  128 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~--~w~~g~~~~~~G~~P~~~v  128 (162)
                      .+.++|+     ..++.|++||+|.++++.+.  +||.|+.++.+|+||+|||
T Consensus       418 ~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv  470 (473)
T KOG1843|consen  418 IATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYV  470 (473)
T ss_pred             eeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhcccccccccccee
Confidence            5566666     77899999999999888765  3444444444444444444

>KOG0515|consensus

Probab=97.90  E-value=5.2e-06  Score=65.32  Aligned_cols=44  Identities=25%  Similarity=0.647  Sum_probs=33.8

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEe
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQF  153 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~  153 (162)
                      .++|+|..||.++|+++.+.                    .+.+||+.+++|+.|++|-||+-+
T Consensus       697 ~DELsf~eGd~lTvirr~d~--------------------~eteWWwa~lng~eGyVPRnylgL  740 (752)
T KOG0515|consen  697 EDELSFDEGDELTVIRRDDE--------------------VETEWWWARLNGEEGYVPRNYLGL  740 (752)
T ss_pred             cccccccCCceeEEEecCCc--------------------chhhhhhHhhcCcccccchhhhhc
Confidence            88999999999999999764                    355677777777777777776643

>KOG1264|consensus

Probab=97.90  E-value=3.6e-06  Score=69.16  Aligned_cols=49  Identities=24%  Similarity=0.489  Sum_probs=42.8

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCC-CCceeeeeEEe
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGT-TGAFPMSYVQI  130 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~-~G~~P~~~v~~  130 (162)
                      -.++++|+     .++|+|.++-+|+...+.+.+||.|.++|+ .+|||+|||+.
T Consensus       775 vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVee  829 (1267)
T KOG1264|consen  775 VTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEE  829 (1267)
T ss_pred             hhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhh
Confidence            34677887     889999999999999999989999999875 69999999986

>KOG1813|consensus

Probab=97.88  E-value=4.6e-06  Score=60.95  Aligned_cols=45  Identities=22%  Similarity=0.576  Sum_probs=38.8

Q ss_pred             cccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673          10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        10 l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +-|-||.+.|. .|+++.|+|.||..|-...++...  .|.+|.+.+.
T Consensus       242 f~c~icr~~f~-~pVvt~c~h~fc~~ca~~~~qk~~--~c~vC~~~t~  286 (313)
T KOG1813|consen  242 FKCFICRKYFY-RPVVTKCGHYFCEVCALKPYQKGE--KCYVCSQQTH  286 (313)
T ss_pred             ccccccccccc-cchhhcCCceeehhhhccccccCC--cceecccccc
Confidence            46999999999 889999999999999887776443  7999988664

>KOG1734|consensus

Probab=97.85  E-value=3.3e-06  Score=60.98  Aligned_cols=59  Identities=27%  Similarity=0.555  Sum_probs=44.7

Q ss_pred             CccccccccccccCC---------CEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchh
Q psy9673           8 DLLECSVCLDRLDTS---------SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVL   68 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~---------p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~   68 (162)
                      ++.-|+||..-+...         .-.++|+|+|+..||+.|-.-++..+||.|+..+.  .+.++.|..
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd--l~rmfsnpW  290 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD--LKRMFSNPW  290 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh--HhhhccCcc
Confidence            456699999888522         35789999999999999976555559999999775  445555543

>KOG0804|consensus

Probab=97.82  E-value=6.5e-06  Score=63.38  Aligned_cols=48  Identities=40%  Similarity=0.854  Sum_probs=39.4

Q ss_pred             CCCccccccccccccCCC---EEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDTSS---KVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p---~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +.+.-.||||++.+....   .++.|.|+|+-.|+..|...    +||+||....
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~----scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS----SCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC----cChhhhhhcC
Confidence            456779999999997443   66779999999999998873    7999998654

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.81  E-value=7e-06  Score=48.18  Aligned_cols=49  Identities=29%  Similarity=0.576  Sum_probs=23.5

Q ss_pred             cccccccccccc-CC--CEEc----ccCCccchhcHHHHHhcC----CC-----ccccccccccc
Q psy9673           9 LLECSVCLDRLD-TS--SKVL----PCQHTFCKKCLEEIVSSH----KE-----LRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~-~~--p~~~----~C~H~fC~~Cl~~~~~~~----~~-----~~Cp~Cr~~~~   57 (162)
                      ++.|+||..++. +.  |.+.    .|+..|+..||.+|+...    ..     ..||.|+.+++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            578999999865 21  2222    599999999999998731    11     26999999876

>KOG2546|consensus

Probab=97.81  E-value=3.1e-06  Score=64.67  Aligned_cols=25  Identities=40%  Similarity=0.842  Sum_probs=23.6

Q ss_pred             cCCeEEEEECCeEEeecCCCeEecc
Q psy9673         131 DNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus       131 ~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      |++||||..+|..|+||.|||+++-
T Consensus       455 ddgw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  455 DDGWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             CCcchhheecCcceeccCccccccc
Confidence            8999999999999999999999863

>KOG0297|consensus

Probab=97.80  E-value=1.3e-05  Score=62.21  Aligned_cols=50  Identities=36%  Similarity=0.859  Sum_probs=42.9

Q ss_pred             cCCCccccccccccccCCCEE-cccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           5 TLNDLLECSVCLDRLDTSSKV-LPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~-~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .+++++.|++|..++. +|.. +.|||.||..|+..++..++  .||.|+....
T Consensus        17 ~~~~~l~C~~C~~vl~-~p~~~~~cgh~fC~~C~~~~~~~~~--~cp~~~~~~~   67 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLR-DPVQTTTCGHRFCAGCLLESLSNHQ--KCPVCRQELT   67 (391)
T ss_pred             CCcccccCcccccccc-CCCCCCCCCCcccccccchhhccCc--CCcccccccc
Confidence            3577899999999999 6666 59999999999999998744  8999988764

>KOG2546|consensus

Probab=97.77  E-value=8.3e-06  Score=62.41  Aligned_cols=48  Identities=29%  Similarity=0.556  Sum_probs=42.4

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      +..++|+     .++++|.++-+|-++++.|++||+|-.+|-.|+||-|||+.
T Consensus       425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~  477 (483)
T KOG2546|consen  425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEP  477 (483)
T ss_pred             HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccc
Confidence            3445665     77999999999999999999999999999999999999974

>KOG4172|consensus

Probab=97.66  E-value=7.2e-06  Score=44.61  Aligned_cols=47  Identities=26%  Similarity=0.612  Sum_probs=37.2

Q ss_pred             ccccccccccccCCCEEcccCC-ccchhcHHHHHhcCCCccccccccccc
Q psy9673           9 LLECSVCLDRLDTSSKVLPCQH-TFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~~C~H-~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +.+|.||.+--. +.++.-||| -.|..|-.+.+... ...||+||++++
T Consensus         7 ~dECTICye~pv-dsVlYtCGHMCmCy~Cg~rl~~~~-~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPV-DSVLYTCGHMCMCYACGLRLKKAL-HGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcc-hHHHHHcchHHhHHHHHHHHHHcc-CCcCcchhhHHH
Confidence            368999999887 667888999 46889988777632 238999999876

>KOG3601|consensus

Probab=97.65  E-value=1.4e-05  Score=55.85  Aligned_cols=45  Identities=22%  Similarity=0.513  Sum_probs=30.5

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV  128 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v  128 (162)
                      .+++|+     +.++.|.+|+.+.++++.+..||.|...|+.|+||++||
T Consensus       166 qQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv  215 (222)
T KOG3601|consen  166 QQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYV  215 (222)
T ss_pred             hhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCccc
Confidence            445555     778889999999998886665555555555555555544

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.64  E-value=4.2e-05  Score=41.59  Aligned_cols=43  Identities=26%  Similarity=0.668  Sum_probs=33.6

Q ss_pred             ccccccccc-cCCCEEcccC-----CccchhcHHHHHhcCCCccccccc
Q psy9673          11 ECSVCLDRL-DTSSKVLPCQ-----HTFCKKCLEEIVSSHKELRCPECR   53 (162)
Q Consensus        11 ~C~iC~~~~-~~~p~~~~C~-----H~fC~~Cl~~~~~~~~~~~Cp~Cr   53 (162)
                      .|-||++.. .+.+.+.||.     |.++..|+.+|+..++...||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            378998722 2257888986     679999999999877667899984

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG1702|consensus

Probab=97.63  E-value=7.3e-05  Score=52.09  Aligned_cols=46  Identities=33%  Similarity=0.736  Sum_probs=35.7

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe--cCCCCceeeeeEE
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ  129 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~--~~~~G~~P~~~v~  129 (162)
                      -+++|+     .++++|..||.|.....++++|-+|+.  .|..|..|+||++
T Consensus       210 yra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie  262 (264)
T KOG1702|consen  210 YRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIE  262 (264)
T ss_pred             chhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhhee
Confidence            345665     678999999999888888999999884  5566777777765

>KOG3655|consensus

Probab=97.61  E-value=1.8e-05  Score=61.39  Aligned_cols=51  Identities=27%  Similarity=0.686  Sum_probs=36.3

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..+.++|+     ..+++|..++.|.+++..+++||.|..       |               .|.+|+||+|||+++
T Consensus       428 q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~-------p---------------dG~~glfPaNyV~li  483 (484)
T KOG3655|consen  428 QTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQG-------P---------------DGEVGLFPANYVELI  483 (484)
T ss_pred             CCccccccccccCCcccccCCccccccccccCCccccccC-------C---------------CCCcCcccccccccC
Confidence            34566666     567888899999888888888877764       1               356667777777654

>KOG3523|consensus

Probab=97.55  E-value=1.1e-05  Score=64.22  Aligned_cols=41  Identities=34%  Similarity=0.604  Sum_probs=37.4

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEE--ecCCCCceeeeeEEe
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQI  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~--~~~~~G~~P~~~v~~  130 (162)
                      ++++.++.+|++.|+.+.++||++|+  .+|..||||.+|++.
T Consensus       622 ~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~vee  664 (695)
T KOG3523|consen  622 PDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEE  664 (695)
T ss_pred             CceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHH
Confidence            88999999999999999999999998  478899999988864

>KOG4792|consensus

Probab=97.55  E-value=0.00011  Score=52.09  Aligned_cols=44  Identities=32%  Similarity=0.485  Sum_probs=40.1

Q ss_pred             eeccceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          87 FLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        87 ~~~~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      .||...|.++.||++.|.++.-++-|+|+++|+.|.||..||+.
T Consensus       240 AYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf  283 (293)
T KOG4792|consen  240 AYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRF  283 (293)
T ss_pred             ccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEe
Confidence            34577889999999999999999999999999999999999975

>KOG1002|consensus

Probab=97.53  E-value=2.4e-05  Score=61.67  Aligned_cols=50  Identities=30%  Similarity=0.810  Sum_probs=42.2

Q ss_pred             CCccccccccccccCCCEEcccCCccchhcHHHHHhc---CCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS---HKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~---~~~~~Cp~Cr~~~~   57 (162)
                      .....|.+|.+.-. +++..+|.|.||..|+.+++..   ....+||+|-..++
T Consensus       534 k~~~~C~lc~d~ae-d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  534 KGEVECGLCHDPAE-DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             cCceeecccCChhh-hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            45678999999998 8899999999999999988763   23379999988765

>KOG4185|consensus

Probab=97.50  E-value=4.9e-05  Score=57.04  Aligned_cols=67  Identities=30%  Similarity=0.732  Sum_probs=53.7

Q ss_pred             ccccccccccccC-----CCEEcccCCccchhcHHHHHhcCCCccccccccccc---ccccCCCcchhhhhhhhcc
Q psy9673           9 LLECSVCLDRLDT-----SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE---CKVDELPPNVLLMRILEGL   76 (162)
Q Consensus         9 ~l~C~iC~~~~~~-----~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~---~~~~~l~~n~~l~~i~e~~   76 (162)
                      .+.|-||.+.|+.     .|+++.|||+||..|+...+.+ ....||.||.+..   .....+..|+.+..++...
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN-SRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CCceeecCccccccCcccCCcccccCceehHhHHHHHhcC-ceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            5679999999963     3899999999999999987775 4467899999842   4466778888888877765

>smart00326 SH3 Src homology 3 domains

Probab=97.48  E-value=0.0001  Score=40.86  Aligned_cols=24  Identities=38%  Similarity=0.977  Sum_probs=22.1

Q ss_pred             cCCeEEEEEC-CeEEeecCCCeEec
Q psy9673         131 DNNWFYGEVN-GTTGAFPMSYVQFV  154 (162)
Q Consensus       131 ~~~w~~g~~~-g~~g~~p~~~~~~~  154 (162)
                      +++||.++.. |+.|+||++|++.+
T Consensus        34 ~~~w~~~~~~~~~~G~vP~~~v~~~   58 (58)
T smart00326       34 DDGWWKGRLGRGKEGLFPSNYVEEI   58 (58)
T ss_pred             CCCeEEEEeCCCCEEEEchHHEEEC
Confidence            7899999998 99999999999864

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG4265|consensus

Probab=97.47  E-value=6e-05  Score=56.71  Aligned_cols=46  Identities=35%  Similarity=0.855  Sum_probs=37.7

Q ss_pred             ccccccccccccCCCEEcccCC-ccchhcHHHHHhcCCCccccccccccc
Q psy9673           9 LLECSVCLDRLDTSSKVLPCQH-TFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~~C~H-~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      --+|-||+.... +..++||.| -.|..|.+...-.++  .||+||.++.
T Consensus       290 gkeCVIClse~r-dt~vLPCRHLCLCs~Ca~~Lr~q~n--~CPICRqpi~  336 (349)
T KOG4265|consen  290 GKECVICLSESR-DTVVLPCRHLCLCSGCAKSLRYQTN--NCPICRQPIE  336 (349)
T ss_pred             CCeeEEEecCCc-ceEEecchhhehhHhHHHHHHHhhc--CCCccccchH
Confidence            468999999999 889999999 459999876553333  7999999875

>KOG4367|consensus

Probab=97.47  E-value=5.8e-05  Score=58.24  Aligned_cols=37  Identities=30%  Similarity=0.818  Sum_probs=32.6

Q ss_pred             CCCccccccccccccCCCEEcccCCccchhcHHHHHhc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS   43 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~   43 (162)
                      ++++|.|+||..+|. +|++++|+|..|..|....+.+
T Consensus         1 meeelkc~vc~~f~~-epiil~c~h~lc~~ca~~~~~~   37 (699)
T KOG4367|consen    1 MEEELKCPVCGSFYR-EPIILPCSHNLCQACARNILVQ   37 (699)
T ss_pred             CcccccCceehhhcc-CceEeecccHHHHHHHHhhccc
Confidence            367999999999999 9999999999999998866553

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.47  E-value=4.5e-05  Score=56.08  Aligned_cols=44  Identities=32%  Similarity=0.853  Sum_probs=35.8

Q ss_pred             cccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccc
Q psy9673          10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRV   54 (162)
Q Consensus        10 l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~   54 (162)
                      |.|++|..++.++-.+-.|+|.||..||...+... .+.||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds-Df~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS-DFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc-cccCCCccc
Confidence            88999999999444444799999999999777643 368999976

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.45  E-value=3.1e-05  Score=64.80  Aligned_cols=51  Identities=27%  Similarity=0.670  Sum_probs=39.5

Q ss_pred             CCccccccccccccCC------CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTS------SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~------p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ...-+|+||..++.--      .+-..|.|.|+.+|+..|..+.+.-.||+||..++
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            4456899999998511      12224999999999999999877779999997653

>KOG1785|consensus

Probab=97.44  E-value=4.7e-05  Score=58.08  Aligned_cols=46  Identities=30%  Similarity=0.782  Sum_probs=39.4

Q ss_pred             ccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673          11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        11 ~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .|.||-+-=+ +..+-+|||..|..|+..|..+...-.||.||..++
T Consensus       371 LCKICaendK-dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  371 LCKICAENDK-DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             HHHHhhccCC-CcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            5899998877 778889999999999999986543458999999875

>KOG3875|consensus

Probab=97.43  E-value=3.2e-05  Score=57.09  Aligned_cols=57  Identities=28%  Similarity=0.522  Sum_probs=37.0

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     +.|++|+.||++.|..+.+..          |        ++.+||..+.  +|.+|++|.|||+.+
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~----------~--------~~~~gW~lat~dg~~tG~iP~NYvkIi  330 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQ----------G--------VRCEGWLLATRDGGTTGLIPINYVKII  330 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccC----------C--------CCCcceeeeeccCCeeeeeehhhhhhh
Confidence            34677777     889999999999998886641          0        1233444444  466666666666655


Q ss_pred             cC
Q psy9673         155 WY  156 (162)
Q Consensus       155 ~~  156 (162)
                      .-
T Consensus       331 ~r  332 (362)
T KOG3875|consen  331 GR  332 (362)
T ss_pred             hc
Confidence            43

>KOG1451|consensus

Probab=97.29  E-value=0.00019  Score=57.38  Aligned_cols=40  Identities=30%  Similarity=0.669  Sum_probs=24.9

Q ss_pred             cceeeccCCCEEE-EeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673          90 ILDLNFKKDDIVI-LRRKIDNNWFYGEVNGTTGAFPMSYVQ  129 (162)
Q Consensus        90 ~~el~~~~gd~i~-v~~~~~~~w~~g~~~~~~G~~P~~~v~  129 (162)
                      +.++.|..|.++. +.....+||..|+++|+.|++|+|||+
T Consensus       770 ~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve  810 (812)
T KOG1451|consen  770 HSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVE  810 (812)
T ss_pred             cccccccCcceeeeecccCCCCceeeecCCCcccCcccccC
Confidence            5567777777663 333445566666666666666666664

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=97.26  E-value=0.00012  Score=43.07  Aligned_cols=29  Identities=24%  Similarity=0.527  Sum_probs=26.4

Q ss_pred             ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673          27 PCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        27 ~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      -|.|.|+..||.+|+..++  .||+++++..
T Consensus        53 ~CnHaFH~HCI~rWL~Tk~--~CPld~q~w~   81 (88)
T COG5194          53 VCNHAFHDHCIYRWLDTKG--VCPLDRQTWV   81 (88)
T ss_pred             ecchHHHHHHHHHHHhhCC--CCCCCCceeE
Confidence            4999999999999999877  8999999875

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=97.23  E-value=0.0003  Score=38.36  Aligned_cols=24  Identities=38%  Similarity=0.852  Sum_probs=21.1

Q ss_pred             ecCCeEEEEECC-eEEeecCCCeEe
Q psy9673         130 IDNNWFYGEVNG-TTGAFPMSYVQF  153 (162)
Q Consensus       130 ~~~~w~~g~~~g-~~g~~p~~~~~~  153 (162)
                      .+++||.++..+ +.|+||.+||++
T Consensus        30 ~~~~w~~~~~~~~~~G~vP~~~v~~   54 (54)
T cd00174          30 SDDGWWEGRLLGGKRGLFPSNYVEE   54 (54)
T ss_pred             CCCCeEEEEECCCCEEEEccccCcC
Confidence            378999999976 999999999873

>KOG2222|consensus

Probab=97.16  E-value=7.3e-05  Score=58.53  Aligned_cols=48  Identities=29%  Similarity=0.576  Sum_probs=41.7

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      +++++.+     ..++.|.++|+|++.+.-|+.-|.|+++|-+||||+-||++
T Consensus       550 rakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvel  602 (848)
T KOG2222|consen  550 RAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVEL  602 (848)
T ss_pred             HHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHH
Confidence            3445554     67899999999999999999999999999999999999986

>KOG1941|consensus

Probab=97.14  E-value=0.00013  Score=55.53  Aligned_cols=48  Identities=35%  Similarity=0.845  Sum_probs=39.3

Q ss_pred             CccccccccccccCC---CEEcccCCccchhcHHHHHhcCCCccccccccc
Q psy9673           8 DLLECSVCLDRLDTS---SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVL   55 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~---p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~   55 (162)
                      -.|.|..|.+.+--.   ---+||.|+|+.+|+.+++.+...-+||-||+-
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl  414 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL  414 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            467899999998422   234689999999999999988777899999953

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=97.14  E-value=0.00023  Score=39.07  Aligned_cols=45  Identities=29%  Similarity=0.581  Sum_probs=33.8

Q ss_pred             CccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ....|-.|...-. ..++++|||..|..|....--+    .||.|.+++.
T Consensus         6 ~~~~~~~~~~~~~-~~~~~pCgH~I~~~~f~~~rYn----gCPfC~~~~~   50 (55)
T PF14447_consen    6 PEQPCVFCGFVGT-KGTVLPCGHLICDNCFPGERYN----GCPFCGTPFE   50 (55)
T ss_pred             cceeEEEcccccc-ccccccccceeeccccChhhcc----CCCCCCCccc
Confidence            3445666665555 6788999999999998754442    6999999886

>KOG3655|consensus

Probab=97.13  E-value=0.00012  Score=56.95  Aligned_cols=16  Identities=31%  Similarity=0.918  Sum_probs=9.9

Q ss_pred             ecCCeEEEEECCeEEeec
Q psy9673         130 IDNNWFYGEVNGTTGAFP  147 (162)
Q Consensus       130 ~~~~w~~g~~~g~~g~~p  147 (162)
                      +|++||.|  -|..|-++
T Consensus       458 vdegww~g--~~pdG~~g  473 (484)
T KOG3655|consen  458 VDEGWWTG--QGPDGEVG  473 (484)
T ss_pred             cCCccccc--cCCCCCcC
Confidence            38899975  45555433

>KOG3002|consensus

Probab=97.06  E-value=0.00035  Score=52.28  Aligned_cols=61  Identities=25%  Similarity=0.595  Sum_probs=45.6

Q ss_pred             CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLF   77 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~   77 (162)
                      -+.|.||||.+.+..+.....=||.-|..|-.+...     .||.||.++.    . ..++.++++++...
T Consensus        46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~-----~CP~Cr~~~g----~-~R~~amEkV~e~~~  106 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSN-----KCPTCRLPIG----N-IRCRAMEKVAEAVL  106 (299)
T ss_pred             hhhccCchhhccCcccceecCCCcEehhhhhhhhcc-----cCCccccccc----c-HHHHHHHHHHHhce
Confidence            467899999999995556666789999999865333     7999999886    2 25666777766554

>KOG3725|consensus

Probab=96.98  E-value=6.3e-05  Score=54.28  Aligned_cols=53  Identities=21%  Similarity=0.528  Sum_probs=36.1

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..+++.+|+     +.++++-.+++|.|..-..                     .|.+|..|+-+|+.|.+|.+|+|++
T Consensus       317 trkArVlyDYdAa~s~ElslladeiitVyslpG---------------------MD~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  317 TRKARVLYDYDAALSQELSLLADEIITVYSLPG---------------------MDADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             ccceeeeecccccchhhhhhhhcceEEEEecCC---------------------CChHHhhhhhcCCCCCcchhHHHhc
Confidence            345677777     7778888888887765422                     2556777777777777777777754

>KOG0828|consensus

Probab=96.94  E-value=0.00027  Score=55.40  Aligned_cols=51  Identities=29%  Similarity=0.770  Sum_probs=38.2

Q ss_pred             CCCccccccccccccC-----C-----------CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDT-----S-----------SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~-----~-----------p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .+....|+||+..+.-     +           =+++||.|.|+..|+.+|+...+ ..||+||.++.
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk-l~CPvCR~pLP  634 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK-LICPVCRCPLP  634 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc-ccCCccCCCCC
Confidence            3455679999977631     1           23459999999999999998432 47999998765

>KOG1493|consensus

Probab=96.91  E-value=0.00021  Score=41.72  Aligned_cols=47  Identities=26%  Similarity=0.638  Sum_probs=34.0

Q ss_pred             cccccccccc-----------CCCEEc-ccCCccchhcHHHHHhcC-CCccccccccccc
Q psy9673          11 ECSVCLDRLD-----------TSSKVL-PCQHTFCKKCLEEIVSSH-KELRCPECRVLVE   57 (162)
Q Consensus        11 ~C~iC~~~~~-----------~~p~~~-~C~H~fC~~Cl~~~~~~~-~~~~Cp~Cr~~~~   57 (162)
                      .|.||.--|.           +-|.+. -|.|.|+..||.+|+... +...||+||+..+
T Consensus        22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            5667666553           224444 399999999999999753 2358999999764

>KOG0827|consensus

Probab=96.89  E-value=0.00046  Score=52.58  Aligned_cols=45  Identities=27%  Similarity=0.730  Sum_probs=32.6

Q ss_pred             cccccccccccCC---CEEcccCCccchhcHHHHHhcCCC-cccccccc
Q psy9673          10 LECSVCLDRLDTS---SKVLPCQHTFCKKCLEEIVSSHKE-LRCPECRV   54 (162)
Q Consensus        10 l~C~iC~~~~~~~---p~~~~C~H~fC~~Cl~~~~~~~~~-~~Cp~Cr~   54 (162)
                      ..|.||.+.+...   ..+-.|||+|+..|+..|+.-..+ ..||.|+-
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i   53 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI   53 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence            3699996655421   122239999999999999985444 48999994

>KOG1118|consensus

Probab=96.82  E-value=0.00047  Score=51.04  Aligned_cols=18  Identities=44%  Similarity=0.999  Sum_probs=15.2

Q ss_pred             EEEecCCCCceeeeeEEe
Q psy9673         113 YGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       113 ~g~~~~~~G~~P~~~v~~  130 (162)
                      .|+..|.+|+||.|||++
T Consensus       343 eG~~~g~sG~FPvnYv~v  360 (366)
T KOG1118|consen  343 EGEKHGESGMFPVNYVEV  360 (366)
T ss_pred             hheecCccCccccceeEE
Confidence            467778899999999975

>KOG1264|consensus

Probab=96.79  E-value=0.00059  Score=56.71  Aligned_cols=36  Identities=25%  Similarity=0.513  Sum_probs=27.8

Q ss_pred             CceeeeeEEecCCeEEEEECCe-EEeecCCCeEeccC
Q psy9673         121 GAFPMSYVQIDNNWFYGEVNGT-TGAFPMSYVQFVWY  156 (162)
Q Consensus       121 G~~P~~~v~~~~~w~~g~~~g~-~g~~p~~~~~~~~~  156 (162)
                      |.+-.|-.+..++||.|.+||+ +++||+||||.+..
T Consensus       796 ~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~  832 (1267)
T KOG1264|consen  796 GAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST  832 (1267)
T ss_pred             cceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence            3444445555778999999965 89999999999865

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.75  E-value=0.00078  Score=36.14  Aligned_cols=44  Identities=30%  Similarity=0.807  Sum_probs=21.0

Q ss_pred             cccccccccC-CCEEc--ccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673          12 CSVCLDRLDT-SSKVL--PCQHTFCKKCLEEIVSSHKELRCPECRVLV   56 (162)
Q Consensus        12 C~iC~~~~~~-~p~~~--~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~   56 (162)
                      |++|.+.+.. +....  +||+.+|..|..+.+... ...||-||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~-~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE-GGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS--SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc-CCCCCCCCCCC
Confidence            6888888832 22223  588899999999988632 23899999864

>KOG2930|consensus

Probab=96.70  E-value=0.00071  Score=41.93  Aligned_cols=27  Identities=22%  Similarity=0.554  Sum_probs=24.3

Q ss_pred             ccCCccchhcHHHHHhcCCCccccccccc
Q psy9673          27 PCQHTFCKKCLEEIVSSHKELRCPECRVL   55 (162)
Q Consensus        27 ~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~   55 (162)
                      .|.|.|+.-||.+|+..++  .||+|.+.
T Consensus        80 ~CNHaFH~hCisrWlktr~--vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKTRN--VCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhhcC--cCCCcCcc
Confidence            4999999999999999877  89999774

>KOG0825|consensus

Probab=96.70  E-value=0.00031  Score=57.96  Aligned_cols=47  Identities=21%  Similarity=0.439  Sum_probs=36.3

Q ss_pred             ccccccccccccCCC--EEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           9 LLECSVCLDRLDTSS--KVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p--~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .-.|++|+..+.+.-  .-..|+|.||..|+..|-...+  +||+||..|.
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq--TCPiDR~EF~  171 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ--TCPVDRGEFG  171 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc--cCchhhhhhh
Confidence            446888887775332  2246999999999999988666  8999999874

>KOG2856|consensus

Probab=96.64  E-value=0.00042  Score=52.50  Aligned_cols=22  Identities=32%  Similarity=0.948  Sum_probs=20.7

Q ss_pred             CeEEEEEC-CeEEeecCCCeEec
Q psy9673         133 NWFYGEVN-GTTGAFPMSYVQFV  154 (162)
Q Consensus       133 ~w~~g~~~-g~~g~~p~~~~~~~  154 (162)
                      +|..||++ |++|+||+||||-+
T Consensus       449 GWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  449 GWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             ccccccccCCcccccchhhhhcc
Confidence            99999998 99999999999864

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=96.63  E-value=0.0043  Score=33.31  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=17.9

Q ss_pred             eEEecCCeEEEEEC--CeEEeecC
Q psy9673         127 YVQIDNNWFYGEVN--GTTGAFPM  148 (162)
Q Consensus       127 ~v~~~~~w~~g~~~--g~~g~~p~  148 (162)
                      .-..+++||.|+..  |+.|+||+
T Consensus        25 ~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen   25 LEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EEESSSSEEEEEETTTTEEEEEEG
T ss_pred             EEecCCCEEEEEECCCCcEEEeeC
Confidence            33347799999995  79999996

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG4692|consensus

Probab=96.63  E-value=0.0011  Score=50.15  Aligned_cols=48  Identities=25%  Similarity=0.568  Sum_probs=39.4

Q ss_pred             CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .++..|+||.---. ..+..||+|.-|+.||.+.+-+.+  .|-.|+.++.
T Consensus       420 sEd~lCpICyA~pi-~Avf~PC~H~SC~~CI~qHlmN~k--~CFfCktTv~  467 (489)
T KOG4692|consen  420 SEDNLCPICYAGPI-NAVFAPCSHRSCYGCITQHLMNCK--RCFFCKTTVI  467 (489)
T ss_pred             cccccCcceecccc-hhhccCCCCchHHHHHHHHHhcCC--eeeEecceee
Confidence            35677999987666 568889999999999999887544  8999988775

>KOG1645|consensus

Probab=96.61  E-value=0.00074  Score=51.81  Aligned_cols=48  Identities=29%  Similarity=0.708  Sum_probs=37.9

Q ss_pred             ccccccccccccCC----CEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673           9 LLECSVCLDRLDTS----SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV   56 (162)
Q Consensus         9 ~l~C~iC~~~~~~~----p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~   56 (162)
                      -..||||++.+..+    -+.+.|||.|-..|+++|+.......||.|....
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka   55 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA   55 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence            35799999998532    3556799999999999999744456899998754

>KOG4575|consensus

Probab=96.60  E-value=0.0029  Score=51.27  Aligned_cols=47  Identities=26%  Similarity=0.474  Sum_probs=37.2

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCC--CCceeeeeEEe
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGT--TGAFPMSYVQI  130 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~--~G~~P~~~v~~  130 (162)
                      .+++|.     .+++.|..||+|.++...+..||.+...++  .|+||+|||..
T Consensus        11 vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhc   64 (874)
T KOG4575|consen   11 VRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHC   64 (874)
T ss_pred             EEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceee
Confidence            566676     778999999999999987777777775543  69999999953

>KOG3039|consensus

Probab=96.60  E-value=0.0014  Score=47.16  Aligned_cols=48  Identities=21%  Similarity=0.419  Sum_probs=39.3

Q ss_pred             CccccccccccccCC---CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTS---SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~---p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .-..||+|.+.|.+.   .++.+|||.||+.|+.+.+...  ..||+|..+++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D--~v~pv~d~plk  270 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD--MVDPVTDKPLK  270 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc--ccccCCCCcCc
Confidence            345699999999753   5666899999999999987743  48999999886

>KOG4275|consensus

Probab=96.34  E-value=0.00071  Score=49.73  Aligned_cols=42  Identities=31%  Similarity=0.770  Sum_probs=34.4

Q ss_pred             ccccccccccccCCCEEcccCCc-cchhcHHHHHhcCCCccccccccccc
Q psy9673           9 LLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~~C~H~-fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ...|.||++.-. +-+.++|||. -|..|-.++-      .||+||+.+.
T Consensus       300 ~~LC~ICmDaP~-DCvfLeCGHmVtCt~CGkrm~------eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPR-DCVFLECGHMVTCTKCGKRMN------ECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCc-ceEEeecCcEEeehhhccccc------cCchHHHHHH
Confidence            567999999998 7799999994 5889976633      5999999764

>KOG0826|consensus

Probab=96.31  E-value=0.0024  Score=47.76  Aligned_cols=47  Identities=21%  Similarity=0.423  Sum_probs=38.5

Q ss_pred             ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .-.||||+....++.+..--|-.||+.|+-.++.+.+  .||+-..+..
T Consensus       300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~--~CPVT~~p~~  346 (357)
T KOG0826|consen  300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYG--HCPVTGYPAS  346 (357)
T ss_pred             cccChhHHhccCCCceEEecceEEeHHHHHHHHHhcC--CCCccCCcch
Confidence            4469999999996655556799999999999999776  8999876654

>KOG1001|consensus

Probab=96.31  E-value=0.0015  Score=54.24  Aligned_cols=46  Identities=35%  Similarity=0.852  Sum_probs=39.4

Q ss_pred             cccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673          10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        10 l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..|.+|.+ .. .++.+.|+|.||..|+...........||.||..+.
T Consensus       455 ~~c~ic~~-~~-~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD-LD-SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc-cc-cceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence            68999999 54 889999999999999999887655457999999764

>KOG1451|consensus

Probab=96.27  E-value=0.0016  Score=52.27  Aligned_cols=24  Identities=38%  Similarity=0.918  Sum_probs=22.6

Q ss_pred             cCCeEEEEECCeEEeecCCCeEec
Q psy9673         131 DNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       131 ~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..+|..|.++|+.|++|.||||++
T Consensus       789 e~Gwl~GtLnGktglip~nyve~l  812 (812)
T KOG1451|consen  789 EDGWLVGTLNGKTGLIPSNYVEPL  812 (812)
T ss_pred             CCCceeeecCCCcccCcccccCcC
Confidence            779999999999999999999975

>KOG1571|consensus

Probab=96.24  E-value=0.0035  Score=47.51  Aligned_cols=46  Identities=35%  Similarity=0.702  Sum_probs=35.5

Q ss_pred             CCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +.....|.||.+-.. ..+.+||||.-|  |..-....   ..||+||..+.
T Consensus       302 ~~~p~lcVVcl~e~~-~~~fvpcGh~cc--ct~cs~~l---~~CPvCR~rI~  347 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPK-SAVFVPCGHVCC--CTLCSKHL---PQCPVCRQRIR  347 (355)
T ss_pred             cCCCCceEEecCCcc-ceeeecCCcEEE--chHHHhhC---CCCchhHHHHH
Confidence            445667999999999 679999999877  77654432   35999999765

>KOG0162|consensus

Probab=96.23  E-value=0.002  Score=53.15  Aligned_cols=23  Identities=39%  Similarity=0.914  Sum_probs=21.6

Q ss_pred             cCCeEEEEECCeEEeecCCCeEe
Q psy9673         131 DNNWFYGEVNGTTGAFPMSYVQF  153 (162)
Q Consensus       131 ~~~w~~g~~~g~~g~~p~~~~~~  153 (162)
                      -++||.|+.+|+.|+||.+||++
T Consensus      1083 pSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1083 PSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred             CCcchhhccCCcccccccccccc
Confidence            67999999999999999999975

>KOG4278|consensus

Probab=96.21  E-value=0.011  Score=48.75  Aligned_cols=78  Identities=17%  Similarity=0.266  Sum_probs=54.7

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCC-CeEEEEecCCCCceeeeeEEe-----cCCeEEEEECCe-------
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDN-NWFYGEVNGTTGAFPMSYVQI-----DNNWFYGEVNGT-------  142 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~-~w~~g~~~~~~G~~P~~~v~~-----~~~w~~g~~~g~-------  142 (162)
                      ...-.++||     ...|++.+|+.+.|+.-..+ .|.+.+..+.+||+|+||+.+     .-.|++|-+...       
T Consensus        90 pNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSNyItPvNSLeKhsWYHGpvSRsaaEy~Ls  169 (1157)
T KOG4278|consen   90 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRSAAEYILS  169 (1157)
T ss_pred             CceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCCccccccccccccchhhcccccCccccchhhhhhh
Confidence            344567888     66788999999988877655 599988766669999999997     347998877321       


Q ss_pred             EEeecCCCeEeccCCC
Q psy9673         143 TGAFPMSYVQFVWYLP  158 (162)
Q Consensus       143 ~g~~p~~~~~~~~~~~  158 (162)
                      .||=-+..|+..+..|
T Consensus       170 SgInGSFLVRESEsSp  185 (1157)
T KOG4278|consen  170 SGINGSFLVRESESSP  185 (1157)
T ss_pred             cCcccceEEeeccCCC
Confidence            3444444555554444

>KOG1843|consensus

Probab=96.20  E-value=0.00088  Score=51.44  Aligned_cols=24  Identities=42%  Similarity=0.926  Sum_probs=21.9

Q ss_pred             cCCeEEEEECCeEEeecCCCeEec
Q psy9673         131 DNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       131 ~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      -+.||.|+.+|+.|+||+|||++.
T Consensus       450 ~~dwwtgr~~~~egifPanyv~~~  473 (473)
T KOG1843|consen  450 ANDWWTGRGNGYEGIFPANYVSLS  473 (473)
T ss_pred             hhhHHHhhccccccccccceeccC
Confidence            569999999999999999999863

>KOG1814|consensus

Probab=96.20  E-value=0.0016  Score=50.10  Aligned_cols=48  Identities=35%  Similarity=0.924  Sum_probs=35.6

Q ss_pred             CCccccccccccccC--CCEEcccCCccchhcHHHHHhc---CC---Ccccccccc
Q psy9673           7 NDLLECSVCLDRLDT--SSKVLPCQHTFCKKCLEEIVSS---HK---ELRCPECRV   54 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~--~p~~~~C~H~fC~~Cl~~~~~~---~~---~~~Cp~Cr~   54 (162)
                      ...+.|.||.+....  .-+-+||+|.||..|+..+...   .+   ...||.+.-
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            456789999998853  4577899999999999988763   22   246666654

>KOG4773|consensus

Probab=96.15  E-value=0.0008  Score=50.61  Aligned_cols=41  Identities=34%  Similarity=0.665  Sum_probs=37.6

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ..+|.+..|+++.+..+.+.+||.|+..|..|++|.+|+++
T Consensus       189 ~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~  229 (386)
T KOG4773|consen  189 KLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQ  229 (386)
T ss_pred             cceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhh
Confidence            66888999999999999999999999999999999999886

>KOG2817|consensus

Probab=96.15  E-value=0.0039  Score=47.79  Aligned_cols=51  Identities=22%  Similarity=0.563  Sum_probs=38.9

Q ss_pred             CCCccccccccccc--cCCCEEcccCCccchhcHHHHHhcC-CCcccccccccc
Q psy9673           6 LNDLLECSVCLDRL--DTSSKVLPCQHTFCKKCLEEIVSSH-KELRCPECRVLV   56 (162)
Q Consensus         6 ~~~~l~C~iC~~~~--~~~p~~~~C~H~fC~~Cl~~~~~~~-~~~~Cp~Cr~~~   56 (162)
                      +...+-|||=.+--  .++|+.+.|||+.+..-+.+...++ .++.||.|....
T Consensus       331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            45678899755555  3479999999999999998865543 248999997754

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=96.12  E-value=0.003  Score=41.16  Aligned_cols=49  Identities=20%  Similarity=0.555  Sum_probs=37.0

Q ss_pred             ccccccccccccCCCEEc---ccCCccchhcHHHHHhcCC-Cccccccccccc
Q psy9673           9 LLECSVCLDRLDTSSKVL---PCQHTFCKKCLEEIVSSHK-ELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~---~C~H~fC~~Cl~~~~~~~~-~~~Cp~Cr~~~~   57 (162)
                      .-+|.||++...++-..-   -||-..|..|-...+.... ...||+|+.+++
T Consensus        80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK  132 (140)
T PF05290_consen   80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK  132 (140)
T ss_pred             ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence            347999999987332222   2999999999987776532 359999999987

>KOG4739|consensus

Probab=96.07  E-value=0.0019  Score=46.40  Aligned_cols=44  Identities=25%  Similarity=0.737  Sum_probs=31.5

Q ss_pred             cccccccccccC-CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673          10 LECSVCLDRLDT-SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        10 l~C~iC~~~~~~-~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..|..|...-+. +-.++.|+|+||..|......  .  .||+|++++.
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--~--~C~lCkk~ir   48 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--D--VCPLCKKSIR   48 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccCCc--c--ccccccceee
Confidence            457777765543 345668999999999764222  2  7999999874

>KOG3775|consensus

Probab=96.03  E-value=0.0083  Score=45.81  Aligned_cols=41  Identities=29%  Similarity=0.549  Sum_probs=37.6

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEE--ecCCCCceeeeeEEe
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQI  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~--~~~~~G~~P~~~v~~  130 (162)
                      +++|.+..||-|.|....++-|++|.  ..|++|+||+.|+..
T Consensus       276 pDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~e  318 (482)
T KOG3775|consen  276 PDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHE  318 (482)
T ss_pred             cceeeeecCCeeEeeecccchhhccccccccccccccceeEEe
Confidence            88999999999999999999999998  468899999999875

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=96.00  E-value=0.0063  Score=32.01  Aligned_cols=40  Identities=18%  Similarity=0.687  Sum_probs=23.6

Q ss_pred             cccccccccCCCEEcc---cCCccchhcHHHHHhcCCCcccccc
Q psy9673          12 CSVCLDRLDTSSKVLP---CQHTFCKKCLEEIVSSHKELRCPEC   52 (162)
Q Consensus        12 C~iC~~~~~~~p~~~~---C~H~fC~~Cl~~~~~~~~~~~Cp~C   52 (162)
                      |.+|.++.. .-..-+   |+-.++..|+..++...+...||.|
T Consensus         1 C~~C~~iv~-~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVT-QGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-S-SSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHe-eeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            678888887 444444   8889999999999987655579987

; PDB: 3NW0_A 2CT0_A.

>KOG3800|consensus

Probab=95.99  E-value=0.005  Score=45.33  Aligned_cols=46  Identities=28%  Similarity=0.730  Sum_probs=33.6

Q ss_pred             ccccccccccC-C---CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673          11 ECSVCLDRLDT-S---SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        11 ~C~iC~~~~~~-~---p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .||+|...... +   ..+-+|+|..|.+|+.+.+.. +...||.|...+.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchhh
Confidence            48888754421 2   233489999999999998875 3458999998764

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.91  E-value=0.0057  Score=33.31  Aligned_cols=46  Identities=22%  Similarity=0.557  Sum_probs=23.0

Q ss_pred             ccccccccccccCCCEEcccCCccchhcHHHHH---hcCCCccccccccc
Q psy9673           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV---SSHKELRCPECRVL   55 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~---~~~~~~~Cp~Cr~~   55 (162)
                      .|.|++-...+..+.+...|.|.-|..- ..++   ...+.+.||+|.++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence            3789999999986777778999877543 2232   23455899999763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.81  E-value=0.0047  Score=46.67  Aligned_cols=49  Identities=24%  Similarity=0.653  Sum_probs=38.0

Q ss_pred             CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV   56 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~   56 (162)
                      ++...|.||-+-+. -..++||+|..|.-|-.+...--..+.|+.||..-
T Consensus        59 Een~~C~ICA~~~T-Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          59 EENMNCQICAGSTT-YSARYPCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             cccceeEEecCCce-EEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            45667999999887 77899999999999987644322334899999854

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.78  E-value=0.0071  Score=44.64  Aligned_cols=49  Identities=24%  Similarity=0.480  Sum_probs=38.2

Q ss_pred             CCCccccccccccccC---CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~---~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ....+.|||....|..   -..+.+|||+|+..++....   ....||+|..++.
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFT  161 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccc
Confidence            3567789999999852   13455899999999999874   2237999999986

>KOG2528|consensus

Probab=95.59  E-value=0.0063  Score=47.40  Aligned_cols=48  Identities=23%  Similarity=0.498  Sum_probs=36.6

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecC-CCeEEEE-ecCCCCceeeeeEEe
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKID-NNWFYGE-VNGTTGAFPMSYVQI  130 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~-~~w~~g~-~~~~~G~~P~~~v~~  130 (162)
                      .++++|+     +.+++...++.+.+.+... ++|++|. ..|..|+||++||++
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV   58 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEV   58 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceee
Confidence            3556666     6678888888887766654 4898887 577889999988887

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.59  E-value=0.0056  Score=38.70  Aligned_cols=33  Identities=30%  Similarity=0.668  Sum_probs=26.5

Q ss_pred             CCccccccccccccC-CCEEcccCCccchhcHHH
Q psy9673           7 NDLLECSVCLDRLDT-SSKVLPCQHTFCKKCLEE   39 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~-~p~~~~C~H~fC~~Cl~~   39 (162)
                      .+.-.|++|...+.+ .-.+.||||.|+..|+.|
T Consensus        76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r  109 (109)
T PF10367_consen   76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR  109 (109)
T ss_pred             CCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence            456679999999964 356679999999999754

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG2114|consensus

Probab=95.52  E-value=0.0062  Score=50.96  Aligned_cols=43  Identities=35%  Similarity=0.793  Sum_probs=35.7

Q ss_pred             ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV   56 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~   56 (162)
                      ...|..|...+.-+.+...|||+|+..|+.+     +...||.|+...
T Consensus       840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~-----~~~~CP~C~~e~  882 (933)
T KOG2114|consen  840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLED-----KEDKCPKCLPEL  882 (933)
T ss_pred             eeeecccCCccccceeeeecccHHHHHhhcc-----CcccCCccchhh
Confidence            4579999999986778889999999999982     445899998743

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=95.42  E-value=0.017  Score=38.98  Aligned_cols=52  Identities=25%  Similarity=0.354  Sum_probs=39.8

Q ss_pred             ccCCCccccccccccccCCCEEcccCC-----ccchhcHHHHHhcCCCccccccccccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQH-----TFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H-----~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +....+..|=||.+.-. + ...||.+     ..+.+|+.+|+..++...|+.|+..+.
T Consensus         3 ~~s~~~~~CRIC~~~~~-~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          3 DVSLMDKCCWICKDEYD-V-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CcCCCCCeeEecCCCCC-C-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            34456778999998864 2 3456665     338999999999888889999999874

>KOG3161|consensus

Probab=95.37  E-value=0.004  Score=50.58  Aligned_cols=62  Identities=29%  Similarity=0.596  Sum_probs=42.4

Q ss_pred             CCCccccccccccccC---CCEEcccCCccchhcHHHHHhcCCCcccccccc---cccccccCCCcchhhhhh
Q psy9673           6 LNDLLECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRV---LVECKVDELPPNVLLMRI   72 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~---~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~---~~~~~~~~l~~n~~l~~i   72 (162)
                      +.+.+.|+||...|..   .|+.+-|||+.|..|+......    .|| |..   .........+.|+.+...
T Consensus         8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~----scp-~~~De~~~~~~~~e~p~n~alL~~   75 (861)
T KOG3161|consen    8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA----SCP-TKRDEDSSLMQLKEEPRNYALLRR   75 (861)
T ss_pred             hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc----cCC-CCccccchhcChhhcchhHHHHHh
Confidence            3467889999777732   5899999999999999876653    577 433   222335566677665443

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=95.09  E-value=0.018  Score=30.88  Aligned_cols=41  Identities=24%  Similarity=0.755  Sum_probs=26.4

Q ss_pred             cccccccccCC-CEEcccCCc-----cchhcHHHHHhcCCCcccccc
Q psy9673          12 CSVCLDRLDTS-SKVLPCQHT-----FCKKCLEEIVSSHKELRCPEC   52 (162)
Q Consensus        12 C~iC~~~~~~~-p~~~~C~H~-----fC~~Cl~~~~~~~~~~~Cp~C   52 (162)
                      |-||++.-.+. +.+.||...     .+..|+.+|+...+...|++|
T Consensus         1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            56788776533 577887753     488999999987666678877

>KOG1702|consensus

Probab=95.02  E-value=0.025  Score=39.78  Aligned_cols=25  Identities=52%  Similarity=1.193  Sum_probs=22.7

Q ss_pred             ecCCeEEEEE--CCeEEeecCCCeEec
Q psy9673         130 IDNNWFYGEV--NGTTGAFPMSYVQFV  154 (162)
Q Consensus       130 ~~~~w~~g~~--~g~~g~~p~~~~~~~  154 (162)
                      +|++|-.|..  .|..|+.|+||+|.+
T Consensus       238 iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  238 IDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             ccCCceeeEEEeccccCCCchhheeeC
Confidence            4899999998  799999999999975

>KOG2932|consensus

Probab=94.97  E-value=0.013  Score=43.62  Aligned_cols=42  Identities=29%  Similarity=0.756  Sum_probs=28.9

Q ss_pred             ccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673          11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV   56 (162)
Q Consensus        11 ~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~   56 (162)
                      .|.-|---+..--+.++|.|.||++|...    ...+.||.|-..+
T Consensus        92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~----~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   92 FCDRCDFPIAIYGRMIPCKHVFCLECARS----DSDKICPLCDDRV  133 (389)
T ss_pred             eecccCCcceeeecccccchhhhhhhhhc----CccccCcCcccHH
Confidence            46666544433457789999999999753    2235899997765

>KOG3632|consensus

Probab=94.86  E-value=0.019  Score=48.96  Aligned_cols=41  Identities=32%  Similarity=0.757  Sum_probs=36.2

Q ss_pred             cceeeccCCCEEEEeEecCC-CeEEEEecCCCCceeeeeEEe
Q psy9673          90 ILDLNFKKDDIVILRRKIDN-NWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~-~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ..++.|..||+|.|..++|+ +.++|+++|..|++|++|.+-
T Consensus      1265 eAelafraGdIitVfg~mdddgfyyGelngqkglvpsnfle~ 1306 (1335)
T KOG3632|consen 1265 EAELAFRAGDIITVFGKMDDDGFYYGELNGQKGLVPSNFLEA 1306 (1335)
T ss_pred             ceeeccccCCeEEeeccccCCcccccccCCccCccccccccC
Confidence            45788999999999888766 799999999999999999864

>KOG4445|consensus

Probab=94.85  E-value=0.0083  Score=44.48  Aligned_cols=50  Identities=28%  Similarity=0.596  Sum_probs=38.2

Q ss_pred             CccccccccccccCC--CEEcccCCccchhcHHHHHhc---------------------CCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTS--SKVLPCQHTFCKKCLEEIVSS---------------------HKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~--p~~~~C~H~fC~~Cl~~~~~~---------------------~~~~~Cp~Cr~~~~   57 (162)
                      ..-.|.||+.=|...  -.++.|-|-|+..|+.+++..                     .....||+||..+.
T Consensus       114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            456899999888543  477889999999999888651                     11248999999774

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=94.80  E-value=0.0099  Score=42.70  Aligned_cols=55  Identities=33%  Similarity=0.803  Sum_probs=38.4

Q ss_pred             CCcccCCCccccccccccc--cCCCEEc--c-cCCccchhcHHHHHhcCCCcccc--cccccc
Q psy9673           1 MDEWTLNDLLECSVCLDRL--DTSSKVL--P-CQHTFCKKCLEEIVSSHKELRCP--ECRVLV   56 (162)
Q Consensus         1 ~~~~~~~~~l~C~iC~~~~--~~~p~~~--~-C~H~fC~~Cl~~~~~~~~~~~Cp--~Cr~~~   56 (162)
                      |++.+-..+..||||....  .++.+.+  | |-|..|.+|+.+.++.+. ..||  -|.+-+
T Consensus         2 ~DE~~~~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~Gp-AqCP~~gC~kIL   63 (314)
T COG5220           2 MDEYEEMEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGP-AQCPYKGCGKIL   63 (314)
T ss_pred             cchhhhhhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCC-CCCCCccHHHHH
Confidence            4444555677999998644  4332222  4 999999999999998643 5799  676644

>KOG4773|consensus

Probab=94.53  E-value=0.027  Score=42.66  Aligned_cols=28  Identities=36%  Similarity=0.770  Sum_probs=25.0

Q ss_pred             cCCeEEEEECCeEEeecCCCeEeccCCC
Q psy9673         131 DNNWFYGEVNGTTGAFPMSYVQFVWYLP  158 (162)
Q Consensus       131 ~~~w~~g~~~g~~g~~p~~~~~~~~~~~  158 (162)
                      +..||.|...|..|+||.+|++.+..-|
T Consensus       207 ek~W~~gk~R~~~g~yp~sF~~~ld~fp  234 (386)
T KOG4773|consen  207 EKYWLLGKVRGLTGYYPDSFVKQLDDFP  234 (386)
T ss_pred             ccceeeeeeccccccccHHhhhhhccCc
Confidence            7799999999999999999999985544

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=94.46  E-value=0.076  Score=29.08  Aligned_cols=36  Identities=22%  Similarity=0.443  Sum_probs=26.3

Q ss_pred             eccCCCEEEEeEecCCC-eEEE-EecCCCCceeeeeEE
Q psy9673          94 NFKKDDIVILRRKIDNN-WFYG-EVNGTTGAFPMSYVQ  129 (162)
Q Consensus        94 ~~~~gd~i~v~~~~~~~-w~~g-~~~~~~G~~P~~~v~  129 (162)
                      .+..|+.+.+......+ |++. ..++..||++..|++
T Consensus        18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            36778888888887665 8888 567777888777763

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG0197|consensus

Probab=94.41  E-value=0.018  Score=45.63  Aligned_cols=58  Identities=29%  Similarity=0.716  Sum_probs=47.0

Q ss_pred             eEeeeec-----cceeeccCCCE-EEEeEecCCCeEEEEe--cCCCCceeeeeEEe-----------cCCeEEEEEC
Q psy9673          83 FIRFFLN-----ILDLNFKKDDI-VILRRKIDNNWFYGEV--NGTTGAFPMSYVQI-----------DNNWFYGEVN  140 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~-i~v~~~~~~~w~~g~~--~~~~G~~P~~~v~~-----------~~~w~~g~~~  140 (162)
                      ...++|+     +.+|+|..|+. ..+.+..+..||..+.  .+..|.+|+|||..           +++|+-|.+.
T Consensus        13 ~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf~~~is   89 (468)
T KOG0197|consen   13 IVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGSPAFIKLSDEPWFFGKIS   89 (468)
T ss_pred             eEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccccCCCccccccCCchhcccc
Confidence            3445555     78999999999 7888888889999773  57789999999984           6799988874

>KOG0609|consensus

Probab=94.10  E-value=0.023  Score=45.45  Aligned_cols=40  Identities=28%  Similarity=0.487  Sum_probs=32.8

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecC-----CCCceeeeeEE
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNG-----TTGAFPMSYVQ  129 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~-----~~G~~P~~~v~  129 (162)
                      ...++|++||++.+.++.|..||.+...|     ..|++|+...+
T Consensus       235 Eagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~q  279 (542)
T KOG0609|consen  235 EAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQ  279 (542)
T ss_pred             hcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHH
Confidence            45678999999999999999999988543     46999986554

>KOG1940|consensus

Probab=94.02  E-value=0.026  Score=41.72  Aligned_cols=44  Identities=30%  Similarity=0.766  Sum_probs=35.9

Q ss_pred             cccccccccccc---CCCEEcccCCccchhcHHHHHhcCCCcccccccc
Q psy9673           9 LLECSVCLDRLD---TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRV   54 (162)
Q Consensus         9 ~l~C~iC~~~~~---~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~   54 (162)
                      ...||+|.+.+.   ..+..++|||....+|+....-. + +.||+|.+
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~-~-y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE-G-YTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc-C-CCCCcccc
Confidence            344999999884   25788899999999999886664 3 89999988

>PHA03096 p28-like protein; Provisional

Probab=94.01  E-value=0.025  Score=42.23  Aligned_cols=45  Identities=20%  Similarity=0.413  Sum_probs=31.6

Q ss_pred             cccccccccccCC-------CEEcccCCccchhcHHHHHhcCC-Ccccccccc
Q psy9673          10 LECSVCLDRLDTS-------SKVLPCQHTFCKKCLEEIVSSHK-ELRCPECRV   54 (162)
Q Consensus        10 l~C~iC~~~~~~~-------p~~~~C~H~fC~~Cl~~~~~~~~-~~~Cp~Cr~   54 (162)
                      -.|.||++.....       -....|.|.||..|+..|..... ...||.|+.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            4699999987532       23346999999999999987532 235666655

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.99  E-value=0.023  Score=30.19  Aligned_cols=32  Identities=31%  Similarity=0.823  Sum_probs=21.8

Q ss_pred             EEcccC-CccchhcHHHHHhcCCCccccccccccc
Q psy9673          24 KVLPCQ-HTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        24 ~~~~C~-H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      -...|. |-.|..|+...+....  .||+|..+++
T Consensus        14 ~Li~C~dHYLCl~CLt~ml~~s~--~C~iC~~~LP   46 (50)
T PF03854_consen   14 GLIKCSDHYLCLNCLTLMLSRSD--RCPICGKPLP   46 (50)
T ss_dssp             SEEE-SS-EEEHHHHHHT-SSSS--EETTTTEE--
T ss_pred             CeeeecchhHHHHHHHHHhcccc--CCCcccCcCc
Confidence            445566 7889999998888555  8999999876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG4362|consensus

Probab=93.85  E-value=0.015  Score=47.90  Aligned_cols=51  Identities=33%  Similarity=0.850  Sum_probs=41.1

Q ss_pred             CCCccccccccccccCCCEEcccCCccchhcHHHHHhcCC-Cccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHK-ELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~-~~~Cp~Cr~~~~   57 (162)
                      +.-+++|+||...+. .|..+.|-|.||..|+...+.... ...||+|+....
T Consensus        18 ~~k~lEc~ic~~~~~-~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e   69 (684)
T KOG4362|consen   18 MQKILECPICLEHVK-EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE   69 (684)
T ss_pred             HhhhccCCceeEEee-ccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence            345789999999999 789999999999999876555332 458999997664

>KOG4429|consensus

Probab=93.60  E-value=0.022  Score=42.24  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=30.0

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ  129 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~  129 (162)
                      ..++....|+++.+..+..++||.+++.|.-|.||+.|++
T Consensus       377 ddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iE  416 (421)
T KOG4429|consen  377 DDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIE  416 (421)
T ss_pred             ccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHH
Confidence            5567788888888888877777777777777777766654

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=93.44  E-value=0.024  Score=37.26  Aligned_cols=34  Identities=26%  Similarity=0.665  Sum_probs=27.2

Q ss_pred             ccccccccccccC--CCEEcccC------CccchhcHHHHHh
Q psy9673           9 LLECSVCLDRLDT--SSKVLPCQ------HTFCKKCLEEIVS   42 (162)
Q Consensus         9 ~l~C~iC~~~~~~--~p~~~~C~------H~fC~~Cl~~~~~   42 (162)
                      ..+|.||.+.+.+  ..+.++|+      |.||..|+.+|..
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            6789999999975  35555665      6799999999954

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=93.25  E-value=0.047  Score=41.34  Aligned_cols=48  Identities=27%  Similarity=0.706  Sum_probs=33.1

Q ss_pred             CccccccccccccC-C--CEEcccCCccchhcHHHHHhc-CCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDT-S--SKVLPCQHTFCKKCLEEIVSS-HKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~-~--p~~~~C~H~fC~~Cl~~~~~~-~~~~~Cp~Cr~~~~   57 (162)
                      ++..||+|.+-+.. +  -.-.+||-..|..|.....+. .+  .||.||....
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lng--rcpacrr~y~   64 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNG--RCPACRRKYD   64 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccC--CChHhhhhcc
Confidence            44559999998852 2  223468877788887665543 23  7999999764

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.19  E-value=0.059  Score=40.37  Aligned_cols=51  Identities=22%  Similarity=0.513  Sum_probs=38.7

Q ss_pred             CCCcccccccccccc--CCCEEcccCCccchhcHHHHHhcC-CCcccccccccc
Q psy9673           6 LNDLLECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSH-KELRCPECRVLV   56 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~--~~p~~~~C~H~fC~~Cl~~~~~~~-~~~~Cp~Cr~~~   56 (162)
                      +...+.|||=.+.-.  ++|+.+.|||..-...+.+..+++ .++.||.|....
T Consensus       333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~  386 (396)
T COG5109         333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMS  386 (396)
T ss_pred             ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcch
Confidence            466788998666653  479999999999999988755543 257999996643

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=92.83  E-value=0.29  Score=27.47  Aligned_cols=35  Identities=26%  Similarity=0.277  Sum_probs=26.0

Q ss_pred             eccCCCEEEEeEecCCCeEEEEec-CCCCceeeeeE
Q psy9673          94 NFKKDDIVILRRKIDNNWFYGEVN-GTTGAFPMSYV  128 (162)
Q Consensus        94 ~~~~gd~i~v~~~~~~~w~~g~~~-~~~G~~P~~~v  128 (162)
                      .+..|+.+.+.....++|...+.. |..||+|..++
T Consensus        26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            467788888887755588888865 77888876654

>KOG0298|consensus

Probab=92.45  E-value=0.032  Score=48.92  Aligned_cols=47  Identities=30%  Similarity=0.721  Sum_probs=40.3

Q ss_pred             CccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV   56 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~   56 (162)
                      ....|.+|.+++.+.-.+..|||.+|..|...|+..+.  .||.|....
T Consensus      1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s--~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASS--RCPICKSIK 1198 (1394)
T ss_pred             cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhc--cCcchhhhh
Confidence            34579999999987778889999999999999998766  899998643

>PHA02862 5L protein; Provisional

Probab=92.16  E-value=0.13  Score=34.28  Aligned_cols=46  Identities=22%  Similarity=0.398  Sum_probs=35.3

Q ss_pred             cccccccccccCCCEEcccCC-----ccchhcHHHHHhcCCCccccccccccc
Q psy9673          10 LECSVCLDRLDTSSKVLPCQH-----TFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        10 l~C~iC~~~~~~~p~~~~C~H-----~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..|=||.+.-. +. ..||.+     --+..|+.+|+...+...|+.|+..+.
T Consensus         3 diCWIC~~~~~-e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          3 DICWICNDVCD-ER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CEEEEecCcCC-CC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            35889998765 32 466664     348899999999877789999999874

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=92.15  E-value=0.069  Score=24.78  Aligned_cols=9  Identities=22%  Similarity=0.678  Sum_probs=4.7

Q ss_pred             ccccccccc
Q psy9673          12 CSVCLDRLD   20 (162)
Q Consensus        12 C~iC~~~~~   20 (162)
                      ||-|...+.
T Consensus         3 CP~C~~~V~   11 (26)
T PF10571_consen    3 CPECGAEVP   11 (26)
T ss_pred             CCCCcCCch
Confidence            555555554

Several members are annotated as putative helicases.

>KOG3970|consensus

Probab=92.10  E-value=0.13  Score=36.83  Aligned_cols=48  Identities=29%  Similarity=0.594  Sum_probs=37.6

Q ss_pred             cccccccccccc-CCCEEcccCCccchhcHHHHHhcC------CCcccccccccc
Q psy9673           9 LLECSVCLDRLD-TSSKVLPCQHTFCKKCLEEIVSSH------KELRCPECRVLV   56 (162)
Q Consensus         9 ~l~C~iC~~~~~-~~p~~~~C~H~fC~~Cl~~~~~~~------~~~~Cp~Cr~~~   56 (162)
                      .-.|.+|.-.+. .+.+.+-|-|.|+..|+.++..+-      ..+.||.|...+
T Consensus        50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei  104 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI  104 (299)
T ss_pred             CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence            446999998884 367888999999999999887631      136899998765

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=91.77  E-value=0.023  Score=32.96  Aligned_cols=41  Identities=24%  Similarity=0.597  Sum_probs=23.2

Q ss_pred             ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ++.||.|...+...     =+|.+|..|-..+...   ..||.|..+++
T Consensus         1 e~~CP~C~~~L~~~-----~~~~~C~~C~~~~~~~---a~CPdC~~~Le   41 (70)
T PF07191_consen    1 ENTCPKCQQELEWQ-----GGHYHCEACQKDYKKE---AFCPDCGQPLE   41 (70)
T ss_dssp             --B-SSS-SBEEEE-----TTEEEETTT--EEEEE---EE-TTT-SB-E
T ss_pred             CCcCCCCCCccEEe-----CCEEECccccccceec---ccCCCcccHHH
Confidence            46799999887622     1788899998765443   37999998875

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=91.55  E-value=0.1  Score=40.24  Aligned_cols=30  Identities=27%  Similarity=0.811  Sum_probs=23.4

Q ss_pred             cCCccchhcHHHHHhcCC-----------Cccccccccccc
Q psy9673          28 CQHTFCKKCLEEIVSSHK-----------ELRCPECRVLVE   57 (162)
Q Consensus        28 C~H~fC~~Cl~~~~~~~~-----------~~~Cp~Cr~~~~   57 (162)
                      |....|..|+-+|+.+++           ...||.||+.+-
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            555679999999987543           358999999874

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG1100|consensus

Probab=91.41  E-value=0.08  Score=37.75  Aligned_cols=39  Identities=36%  Similarity=0.795  Sum_probs=30.5

Q ss_pred             cccccccccCCCEEcccCC-ccchhcHHHHHhcCCCccccccccccc
Q psy9673          12 CSVCLDRLDTSSKVLPCQH-TFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        12 C~iC~~~~~~~p~~~~C~H-~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      |-.|.+.=. ...++||.| .+|..|-..      ...||+|+....
T Consensus       161 Cr~C~~~~~-~VlllPCrHl~lC~~C~~~------~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGEREA-TVLLLPCRHLCLCGICDES------LRICPICRSPKT  200 (207)
T ss_pred             ceecCcCCc-eEEeecccceEeccccccc------CccCCCCcChhh
Confidence            888888777 678899998 789999643      226999988654

>KOG1952|consensus

Probab=90.86  E-value=0.12  Score=43.77  Aligned_cols=48  Identities=31%  Similarity=0.804  Sum_probs=36.2

Q ss_pred             CCccccccccccccCCCEEcc---cCCccchhcHHHHHhcC-----CCcccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLP---CQHTFCKKCLEEIVSSH-----KELRCPECRV   54 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~---C~H~fC~~Cl~~~~~~~-----~~~~Cp~Cr~   54 (162)
                      ....+|.||.+.+....-+-+   |-|+|+..||.+|..+.     ..+.||.|+.
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            345689999999964333333   66999999999998742     3489999984

>KOG2222|consensus

Probab=90.80  E-value=0.067  Score=42.52  Aligned_cols=31  Identities=29%  Similarity=0.544  Sum_probs=26.5

Q ss_pred             eeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673         125 MSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus       125 ~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      .-..+.||+=|-|+++|-.|+||+.|||++.
T Consensus       574 tiisekdehcwvgelnglrgwfpakfvelld  604 (848)
T KOG2222|consen  574 TIISEKDEHCWVGELNGLRGWFPAKFVELLD  604 (848)
T ss_pred             EEeecCCcceeeeccccccccchHHHHHHHH
Confidence            3345559999999999999999999999874

>KOG1428|consensus

Probab=90.65  E-value=0.19  Score=45.40  Aligned_cols=50  Identities=20%  Similarity=0.570  Sum_probs=37.5

Q ss_pred             Cccccccccccc-c-CCCEEcccCCccchhcHHHHHhcC--C------Cccccccccccc
Q psy9673           8 DLLECSVCLDRL-D-TSSKVLPCQHTFCKKCLEEIVSSH--K------ELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~-~-~~p~~~~C~H~fC~~Cl~~~~~~~--~------~~~Cp~Cr~~~~   57 (162)
                      .+..|-||.-.- . .+.+.+.|+|.|+..|..+.+.++  +      -+.||+|...+.
T Consensus      3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            456788997554 2 256888999999999999888753  1      158999988764

>KOG1812|consensus

Probab=90.43  E-value=0.11  Score=40.55  Aligned_cols=46  Identities=30%  Similarity=0.795  Sum_probs=30.9

Q ss_pred             cccccccc-ccccC--CCEEcccCCccchhcHHHHHhcC----CCcccccccc
Q psy9673           9 LLECSVCL-DRLDT--SSKVLPCQHTFCKKCLEEIVSSH----KELRCPECRV   54 (162)
Q Consensus         9 ~l~C~iC~-~~~~~--~p~~~~C~H~fC~~Cl~~~~~~~----~~~~Cp~Cr~   54 (162)
                      ...|.||. +....  ...+..|+|.||..|+.+++..+    ..+.||.-+-
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C  198 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGC  198 (384)
T ss_pred             cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCC
Confidence            45799999 44431  12356799999999999887732    3356655433

>KOG3039|consensus

Probab=90.28  E-value=0.21  Score=36.23  Aligned_cols=37  Identities=16%  Similarity=0.268  Sum_probs=31.8

Q ss_pred             cCCCccccccccccccCCCEEcccCCccchhcHHHHHh
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVS   42 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~   42 (162)
                      .+++...|++|+.-+. +|++++=||.||..||.+++-
T Consensus        39 siK~FdcCsLtLqPc~-dPvit~~GylfdrEaILe~il   75 (303)
T KOG3039|consen   39 SIKPFDCCSLTLQPCR-DPVITPDGYLFDREAILEYIL   75 (303)
T ss_pred             ccCCcceeeeeccccc-CCccCCCCeeeeHHHHHHHHH
Confidence            3456668899999999 899999999999999987765

>KOG3268|consensus

Probab=90.17  E-value=0.2  Score=34.53  Aligned_cols=31  Identities=23%  Similarity=0.627  Sum_probs=24.6

Q ss_pred             ccCCccchhcHHHHHhc----CCC-----ccccccccccc
Q psy9673          27 PCQHTFCKKCLEEIVSS----HKE-----LRCPECRVLVE   57 (162)
Q Consensus        27 ~C~H~fC~~Cl~~~~~~----~~~-----~~Cp~Cr~~~~   57 (162)
                      .||..|+.-|+..|++.    +++     -.||.|..++.
T Consensus       189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia  228 (234)
T KOG3268|consen  189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA  228 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence            59999999999999872    222     27999988775

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=89.68  E-value=0.32  Score=32.94  Aligned_cols=34  Identities=18%  Similarity=0.711  Sum_probs=21.6

Q ss_pred             CccccccccccccCCCEEcc------------cCCcc-chhcHHHHHh
Q psy9673           8 DLLECSVCLDRLDTSSKVLP------------CQHTF-CKKCLEEIVS   42 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~------------C~H~f-C~~Cl~~~~~   42 (162)
                      ++..||||++.-= ..++|-            |+.+| +..||.++..
T Consensus         1 ed~~CpICme~PH-NAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    1 EDVTCPICMEHPH-NAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CCccCceeccCCC-ceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            4678999999876 445553            33222 4577776654

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG4575|consensus

Probab=89.55  E-value=0.21  Score=41.00  Aligned_cols=25  Identities=20%  Similarity=0.521  Sum_probs=16.7

Q ss_pred             ecCCeEEEEE---CCeEEeecCCCeEec
Q psy9673         130 IDNNWFYGEV---NGTTGAFPMSYVQFV  154 (162)
Q Consensus       130 ~~~~w~~g~~---~g~~g~~p~~~~~~~  154 (162)
                      +.++||+|.+   ..-.|+||+|||-.+
T Consensus        38 I~dgkwwi~lhrNk~~~g~fpsNFvhcL   65 (874)
T KOG4575|consen   38 IEDGKWWILLHRNKDEDGLFPSNFVHCL   65 (874)
T ss_pred             eccceeeeeeeecccccccCcccceeec
Confidence            3555555544   356999999999443

>KOG3523|consensus

Probab=89.28  E-value=0.036  Score=45.01  Aligned_cols=36  Identities=28%  Similarity=0.486  Sum_probs=28.5

Q ss_pred             CceeeeeEEecCCeEEEEE--CCeEEeecCCCeEeccC
Q psy9673         121 GAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       121 G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~~~  156 (162)
                      |.++..+-+..++|.+|+=  +|-.|+||..||+.+..
T Consensus       630 ~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~  667 (695)
T KOG3523|consen  630 ADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN  667 (695)
T ss_pred             hhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence            4444445555899999987  69999999999998754

>KOG3812|consensus

Probab=89.09  E-value=0.11  Score=39.54  Aligned_cols=36  Identities=22%  Similarity=0.577  Sum_probs=30.4

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEe---cCCCCceee
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPM  125 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~---~~~~G~~P~  125 (162)
                      ...++|...|.+.+..+-+++||.|++   ....||+|+
T Consensus        79 g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   79 GHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             CceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence            446789999999999999999999994   345699996

>KOG2034|consensus

Probab=88.80  E-value=0.21  Score=42.50  Aligned_cols=37  Identities=32%  Similarity=0.539  Sum_probs=29.4

Q ss_pred             CCCccccccccccccC-CCEEcccCCccchhcHHHHHh
Q psy9673           6 LNDLLECSVCLDRLDT-SSKVLPCQHTFCKKCLEEIVS   42 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~-~p~~~~C~H~fC~~Cl~~~~~   42 (162)
                      ++..-.|.+|..-+.. +-.+.+|||.|+..|+.+.+.
T Consensus       814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence            3556689999988854 456679999999999987765

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=88.33  E-value=1.4  Score=23.99  Aligned_cols=35  Identities=17%  Similarity=0.183  Sum_probs=24.7

Q ss_pred             eeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673          93 LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV  128 (162)
Q Consensus        93 l~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v  128 (162)
                      ..+..|..+.+... ..+|.+.+.+|..||++.+.+
T Consensus        19 ~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence            44666777777743 668888888888888876543

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>KOG1815|consensus

Probab=88.25  E-value=0.23  Score=39.61  Aligned_cols=36  Identities=25%  Similarity=0.706  Sum_probs=30.3

Q ss_pred             CccccccccccccCCCEEcccCCccchhcHHHHHhc
Q psy9673           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS   43 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~   43 (162)
                      .+.+|.||.+.+......+.|||.||..|+..++..
T Consensus        69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~  104 (444)
T KOG1815|consen   69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT  104 (444)
T ss_pred             ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence            457899999999744677789999999999998874

>KOG2528|consensus

Probab=88.02  E-value=0.16  Score=39.87  Aligned_cols=25  Identities=36%  Similarity=0.735  Sum_probs=22.6

Q ss_pred             cCCeEEEEE-CCeEEeecCCCeEecc
Q psy9673         131 DNNWFYGEV-NGTTGAFPMSYVQFVW  155 (162)
Q Consensus       131 ~~~w~~g~~-~g~~g~~p~~~~~~~~  155 (162)
                      .++||+|.- .|..|+||+.|||.+.
T Consensus        35 ~~GwLeg~Nsrge~GlfPa~yVeV~~   60 (490)
T KOG2528|consen   35 IEGWLEGSNSRGERGLFPASYVEVTR   60 (490)
T ss_pred             ccccccCCCccCccCCCcccceeeec
Confidence            679999998 6999999999999874

>KOG0199|consensus

Probab=87.06  E-value=0.94  Score=38.33  Aligned_cols=49  Identities=22%  Similarity=0.304  Sum_probs=37.7

Q ss_pred             eeEeeeec---cceeeccCCCEEEEeEecCC-CeEEEE--ecCCCCceeeeeEEe
Q psy9673          82 SFIRFFLN---ILDLNFKKDDIVILRRKIDN-NWFYGE--VNGTTGAFPMSYVQI  130 (162)
Q Consensus        82 ~~~~~~~~---~~el~~~~gd~i~v~~~~~~-~w~~g~--~~~~~G~~P~~~v~~  130 (162)
                      ..++..|+   ++.|-++.||.|.|++.... .||+|.  .+++.|.||.+-|..
T Consensus       377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~  431 (1039)
T KOG0199|consen  377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA  431 (1039)
T ss_pred             ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence            34556666   78899999999998887664 688885  467789999887763

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=86.98  E-value=0.17  Score=27.86  Aligned_cols=40  Identities=28%  Similarity=0.613  Sum_probs=23.1

Q ss_pred             CccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccc
Q psy9673           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVL   55 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~   55 (162)
                      +.+.||.|.+.++ ..       .+..-|............||+|...
T Consensus         1 ~~f~CP~C~~~~~-~~-------~L~~H~~~~H~~~~~~v~CPiC~~~   40 (54)
T PF05605_consen    1 DSFTCPYCGKGFS-ES-------SLVEHCEDEHRSESKNVVCPICSSR   40 (54)
T ss_pred             CCcCCCCCCCccC-HH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence            3578999998655 21       1223333333333345789999764

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=86.90  E-value=0.74  Score=32.85  Aligned_cols=36  Identities=17%  Similarity=0.205  Sum_probs=26.6

Q ss_pred             eccCCCEEEEeEecC-CCeEEEE-ecCCCCceeeeeEE
Q psy9673          94 NFKKDDIVILRRKID-NNWFYGE-VNGTTGAFPMSYVQ  129 (162)
Q Consensus        94 ~~~~gd~i~v~~~~~-~~w~~g~-~~~~~G~~P~~~v~  129 (162)
                      .+..|+.+.++...+ .+|...+ .+|+.||++..|+.
T Consensus        49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls   86 (206)
T PRK10884         49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLS   86 (206)
T ss_pred             EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhc
Confidence            477888888887765 4788887 46777888877764

>KOG3579|consensus

Probab=86.47  E-value=0.38  Score=35.70  Aligned_cols=45  Identities=31%  Similarity=0.691  Sum_probs=30.7

Q ss_pred             CccccccccccccCCCE-Ecc--cCCccchhcHHHHHhcCC---Ccccccc
Q psy9673           8 DLLECSVCLDRLDTSSK-VLP--CQHTFCKKCLEEIVSSHK---ELRCPEC   52 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~-~~~--C~H~fC~~Cl~~~~~~~~---~~~Cp~C   52 (162)
                      .-|.|.+|.+.|.+.-. ..+  =.|.||.-|-++.++.++   ...||.=
T Consensus       267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSG  317 (352)
T KOG3579|consen  267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSG  317 (352)
T ss_pred             CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCC
Confidence            45899999999984322 222  369999999988776532   3455543

>KOG3113|consensus

Probab=86.06  E-value=0.52  Score=34.40  Aligned_cols=47  Identities=19%  Similarity=0.381  Sum_probs=34.4

Q ss_pred             CCccccccccccccCC---CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTS---SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~---p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +..+.|||-.-.+...   ....+|||.|-.+.+.+...  .  .|++|.+.++
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika--s--~C~~C~a~y~  158 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA--S--VCHVCGAAYQ  158 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhhh--c--cccccCCccc
Confidence            3456788866666422   34558999999988887654  2  7999999886

>KOG4429|consensus

Probab=85.83  E-value=0.24  Score=36.97  Aligned_cols=39  Identities=10%  Similarity=0.142  Sum_probs=29.6

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ++|..|-+-...-.-.++||-+++.|+.|-||+.|+|..
T Consensus       380 l~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  380 LGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA  418 (421)
T ss_pred             cCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence            455556555433334889999999999999999999853

>KOG3899|consensus

Probab=85.35  E-value=0.4  Score=35.74  Aligned_cols=30  Identities=30%  Similarity=0.844  Sum_probs=22.9

Q ss_pred             cCCccchhcHHHHHhc-----------CCCccccccccccc
Q psy9673          28 CQHTFCKKCLEEIVSS-----------HKELRCPECRVLVE   57 (162)
Q Consensus        28 C~H~fC~~Cl~~~~~~-----------~~~~~Cp~Cr~~~~   57 (162)
                      |....|.+|+.+|...           .++..||.||+.+-
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc  365 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC  365 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence            5667789999988763           23468999999774

>KOG3771|consensus

Probab=85.10  E-value=0.45  Score=37.69  Aligned_cols=39  Identities=13%  Similarity=0.210  Sum_probs=24.9

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecC-CCeEEEEecCC
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKID-NNWFYGEVNGT  119 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~-~~w~~g~~~~~  119 (162)
                      ...++++|+     .++|.|+.|+.|.|....+ +.||.|.+.|.
T Consensus       400 ~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~  444 (460)
T KOG3771|consen  400 LYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGV  444 (460)
T ss_pred             ccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhh
Confidence            344566666     8899999999997776432 24444444443

>KOG3775|consensus

Probab=84.79  E-value=0.54  Score=36.34  Aligned_cols=25  Identities=40%  Similarity=0.666  Sum_probs=22.2

Q ss_pred             cCCeEEEEE--CCeEEeecCCCeEecc
Q psy9673         131 DNNWFYGEV--NGTTGAFPMSYVQFVW  155 (162)
Q Consensus       131 ~~~w~~g~~--~g~~g~~p~~~~~~~~  155 (162)
                      |+-|++|--  .|..|+||+.|+-.+.
T Consensus       294 dD~W~~G~NlRTG~~GIFPA~ya~evd  320 (482)
T KOG3775|consen  294 DDFWFEGFNLRTGERGIFPAFYAHEVD  320 (482)
T ss_pred             cchhhccccccccccccccceeEEecC
Confidence            889999988  6999999999987763

>KOG2169|consensus

Probab=82.82  E-value=1.1  Score=37.42  Aligned_cols=72  Identities=21%  Similarity=0.409  Sum_probs=48.9

Q ss_pred             cCCCccccccccccccCCCEEcccCCccchhcHHHHHh--cCCCcccccccccccccccCCCcchhhhhhhhcccc
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVS--SHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~--~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~   78 (162)
                      .+.-.|.|+++.-.+.-+.+-..|.|.-|..-..-...  ...++.||+|.+...  -..+.....+..++.....
T Consensus       302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~--~e~l~iD~~~~~iL~~~~~  375 (636)
T KOG2169|consen  302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP--FEGLIIDGYFLNILQSCQA  375 (636)
T ss_pred             cceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCcccc--ccchhhhHHHHHHHhhccC
Confidence            45567889998877775677777888777665432111  245789999999776  4566666666666666555

>KOG2199|consensus

Probab=81.77  E-value=0.37  Score=37.43  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=22.1

Q ss_pred             EEEECCeEEeecCCCeEeccCCCCCC
Q psy9673         136 YGEVNGTTGAFPMSYVQFVWYLPIIN  161 (162)
Q Consensus       136 ~g~~~g~~g~~p~~~~~~~~~~~~~~  161 (162)
                      .|++++.+|+||+|||....+.++++
T Consensus       252 KG~~~~~~GlFPsnfVT~~le~~~~e  277 (462)
T KOG2199|consen  252 KGENHRGIGLFPSNFVTADLEEPKIE  277 (462)
T ss_pred             ccccCCcccccchhhhhhhhcccchh
Confidence            48889999999999999988766655

>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.91  E-value=1.9  Score=25.13  Aligned_cols=43  Identities=26%  Similarity=0.656  Sum_probs=30.0

Q ss_pred             ccccccccccC---CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673          11 ECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        11 ~C~iC~~~~~~---~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .|--|-..+-.   +..+..=.|+||..|....+.  +  .||-|+..+.
T Consensus         7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~--g--~CPnCGGelv   52 (84)
T COG3813           7 NCECCDRDLPPDSTDARICTFECTFCADCAENRLH--G--LCPNCGGELV   52 (84)
T ss_pred             CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc--C--cCCCCCchhh
Confidence            35556666632   344444458999999987665  4  7999999876

>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length

Probab=80.29  E-value=3.3  Score=22.90  Aligned_cols=44  Identities=30%  Similarity=0.716  Sum_probs=31.2

Q ss_pred             cccccccccccCCC-EEcccC--CccchhcHHHHHhcCCCccccccccccc
Q psy9673          10 LECSVCLDRLDTSS-KVLPCQ--HTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        10 l~C~iC~~~~~~~p-~~~~C~--H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      -.|--|...+..+. --..|.  .+||..|....+.  +  .||-|+..+.
T Consensus         6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~--~--~CPNCgGelv   52 (57)
T PF06906_consen    6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN--G--VCPNCGGELV   52 (57)
T ss_pred             CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc--C--cCcCCCCccc
Confidence            35777888885322 223354  6999999998775  3  7999998876

This family contains a number of conserved cysteine residues and its function is unknown.

>KOG4278|consensus

Probab=80.13  E-value=1.1  Score=37.50  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=22.4

Q ss_pred             cCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673         131 DNNWFYGEVNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       131 ~~~w~~g~~~g~~g~~p~~~~~~~~~~  157 (162)
                      +++|.+++..+-+|++|+||.-++-.|
T Consensus       123 NgEWcEartKNGqGWVPSNyItPvNSL  149 (1157)
T KOG4278|consen  123 NGEWCEARTKNGQGWVPSNYITPVNSL  149 (1157)
T ss_pred             CCcceeecccCCCccccccccccccch
Confidence            789999999655699999999887443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
2djq_A	68	The Solution Structure Of The First Sh3 Domain Of M		1e-08
3c0c_A	73	X-Ray Crystal Structure Of The Rat Endophilin A2 Sh		2e-06
1w6x_A	60	Sh3 Domain Of P40phox, Component Of The Nadph Oxida		3e-06
2dyb_A	341	The Crystal Structure Of Human P40(Phox) Length = 3		4e-06
1z9q_A	79	Solution Structure Of Sh3 Domain Of P40phox Length		4e-06
2dbm_A	73	Solution Structures Of The Sh3 Domain Of Human Sh3-		6e-06
3iql_A	71	Crystal Structure Of The Rat Endophilin-A1 Sh3 Doma		7e-06
2ew3_A	68	Solution Structure Of The Sh3 Domain Of Human Sh3gl		8e-06
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		2e-05
2nwm_A	65	Solution Structure Of The First Sh3 Domain Of Human		6e-05
2yup_A	90	Solution Structure Of The Second Sh3 Domain Of Huma		8e-05
2dlm_A	68	Solution Structure Of The First Sh3 Domain Of Human		8e-05
2dl3_A	68	Solution Structure Of The First Sh3 Domain Of Human		9e-05
1j3t_A	74	Solution Structure Of The Second Sh3 Domain Of Huma		2e-04
2a08_A	60	Structure Of The Yeast Yhh6 Sh3 Domain Length = 60		2e-04
1gri_A	217	Grb2 Length = 217		3e-04
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		3e-04
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		4e-04
2ecz_A	70	Solution Structure Of The Sh3 Domain Of Sorbin And		6e-04
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		7e-04
2o2w_A	67	Extending Powder Diffraction To Proteins: Structure		7e-04
2i0n_A	80	Structure Of Dictyostelium Discoideum Myosin Vii Sh		7e-04

>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse Sh3 Domain Containing Ring Finger 2 Length = 68

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 89  NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           N  DL F K D+++LRR++D NW+ GE+NG +G FP S V++
Sbjct: 20  NPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 61

>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain Length = 73

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 89  NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           N  +L F++ D++ L  +ID NW+ G ++G +G FP+SYVQ+
Sbjct: 26  NDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQV 67

>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase Length = 60

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 91  LDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           L+LNFK  D++ L  +I+ +W  G V G TG FP+S+V+I
Sbjct: 19  LELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 58

>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox) Length = 341

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 91  LDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           L+LNFK  D++ L  +I+ +W  G V G TG FP+S+V+I
Sbjct: 189 LELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 228

>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox Length = 79

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 91  LDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           L+LNFK  D++ L  +I+ +W  G V G TG FP+S+V+I
Sbjct: 33  LELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 72

>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3- Containing Grb2-Like Protein 2 Length = 73

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 89  NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           N  +L FK+ DI+ L  +ID NW+ G ++G +G FP++YV+I
Sbjct: 20  NEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEI 61

>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain Length = 71

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 89  NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           N  +L FK+ DI+ L  +ID NW+ G ++G +G FP++YV+I
Sbjct: 24  NEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEI 65

>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3 Length = 68

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 89  NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           N  +L FK+ DI+ L  +ID NW+ G ++G +G FP++YV++
Sbjct: 16  NQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEV 57

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +LN +K DIVI+  K +  W++G +NG  G FP +YV+
Sbjct: 23  ELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVE 60

>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin And Its Interaction With The Peptides From Vinculin Length = 65

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  +K DIV + +++D NW  GE +G  G FP +YV++
Sbjct: 17  ELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 55

>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Vinexin Length = 90

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 91  LDLNFKKDDIVILRRKIDNNWFYGEVNGT--TGAFPMSYVQID 131
           ++L+F+K + + L RK++ NW+ G + GT   G FP SYVQ+ 
Sbjct: 32  VELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVS 74

>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin Length = 68

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  +K DIV + +++D NW  GE +G  G FP +YV++
Sbjct: 23  ELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 61

>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin And Sh3 Domain-Containing Protein 1 Length = 68

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 89  NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
            + +L  +K DIV + ++ID NW+ GE +G  G FP +Y+++
Sbjct: 20  TLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIEL 61

>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Intersectin 2 (Kiaa1256) Length = 74

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           LNF K DI+ +  + +N W++GEV+G  G FP SYV+I
Sbjct: 27  LNFSKHDIITVLEQQEN-WWFGEVHGGRGWFPKSYVKI 63

>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain Length = 60

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 92  DLNFKKDDIVILRRKID--NNWFYGEVNGTTGAFPMSYVQI 130
           DL FKK D++ + +K D  N+W+ G  NG  G FP +YV++
Sbjct: 19  DLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVRV 59

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQID-NNWFYGEV 139
           +L+FK+ DI+ +L  + D NW+  E+NG  G  P +Y+++  + WF+G++
Sbjct: 16  ELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKI 65

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 71  RILEGLFPL--VVSFIRFFLNILD-LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSY 127
           R      P+  V++   +  N  D L+F K  ++ +  K D +W+ GE+NG TG FP +Y
Sbjct: 26  RATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNY 85
Query: 128 VQI 130
           V++
Sbjct: 86  VKM 88

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+F K  ++ +  K D +W+ GE+NG TG FP +YV++
Sbjct: 34  ELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 72

>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3 Domain-Containing Protein 1 Length = 70

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 91  LDLNFKKDDIVILRRKIDNNWFYGEVNGTT--GAFPMSYVQI 130
           ++++F+K + + L R++D NW+ G + GT+  G FP++YV +
Sbjct: 22  VEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 63

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 6  LNDLLECSVCLD-RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRV 54
          L D  EC +C+D R D    +LPC H+FC+KC+++    H+   CP CR+
Sbjct: 12 LTDEEECCICMDGRADL---ILPCAHSFCQKCIDKWSDRHRN--CPICRL 56

>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure Solution Of The Second Sh3 Domain From Ponsin Length = 67

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 91  LDLNFKKDDIVILRRKIDNNWFYGEVNGTT--GAFPMSYVQI 130
           ++++F+K + + L R++D NW+ G + GT+  G FP++YV +
Sbjct: 21  VEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 62

>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3 Domain With Adjacent Proline Rich Region Length = 80

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 93  LNFKKDDIVILR-RKIDNNWFYGEVNGTTGAFPMSYVQI 130
           L FK++DI+ +  +  +N WF G++NG  G+FP+ +V+I
Sbjct: 27  LPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEI 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	8e-23
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	2e-15
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	6e-10
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	4e-15
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	6e-15
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	8e-15
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	9e-15
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	1e-14
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-14
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	2e-14
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	3e-14
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	3e-14
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	4e-14
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	4e-14
1z6u_A	150	NP95-like ring finger protein isoform B; structura	6e-14
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	7e-14
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	9e-14
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	1e-13
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	2e-13
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	2e-13
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	4e-13
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	5e-13
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	6e-13
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	7e-13
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	8e-13
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	9e-13
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	1e-12
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	2e-12
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	2e-12
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-12
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	2e-12
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	3e-12
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	3e-12
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	3e-12
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	3e-12
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	3e-12
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	4e-12
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	4e-12
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	5e-12
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	6e-12
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	7e-12
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	8e-12
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	1e-11
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	1e-11
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	1e-11
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-11
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	1e-11
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	1e-11
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	1e-11
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	1e-11
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-11
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-11
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	2e-11
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	2e-11
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	2e-11
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	2e-11
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-11
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	2e-11
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	2e-11
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	2e-11
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	2e-11
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	2e-11
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-11
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	3e-11
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	3e-11
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	3e-11
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	4e-11
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	4e-11
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	5e-11
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	5e-11
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	6e-11
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	6e-11
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	6e-11
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	7e-11
3u23_A	65	CD2-associated protein; structural genomics, struc	8e-11
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	8e-11
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	8e-11
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	9e-11
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	1e-10
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-10
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	1e-10
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	2e-10
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	2e-10
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	3e-10
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	3e-10
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	3e-10
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	3e-10
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	4e-10
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	4e-10
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	4e-10
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	5e-10
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	7e-10
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	7e-10
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	9e-10
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	1e-09
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	5e-08
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	1e-09
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	1e-09
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	2e-09
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-09
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-09
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	2e-09
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	3e-09
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	3e-09
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	3e-09
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	3e-09
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	3e-09
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	4e-09
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	4e-09
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	4e-09
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	4e-09
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	6e-09
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	6e-09
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	9e-09
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	9e-09
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	1e-08
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	1e-08
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	1e-08
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	2e-08
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	2e-08
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	2e-08
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	2e-08
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	2e-08
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	2e-08
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	3e-08
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	4e-04
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	3e-08
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-08
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	3e-08
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	3e-08
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	3e-08
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	3e-08
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	4e-08
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	4e-08
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	5e-08
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	5e-08
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	5e-08
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	6e-08
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	6e-08
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	5e-05
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	7e-08
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	7e-08
2ect_A	78	Ring finger protein 126; metal binding protein, st	7e-08
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	9e-08
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-07
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	1e-07
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	7e-05
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	1e-07
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	1e-07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	1e-07
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	2e-07
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	2e-07
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	2e-07
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	2e-07
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	2e-07
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	2e-07
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	3e-07
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	3e-07
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	3e-07
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	4e-07
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	4e-07
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	4e-07
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	4e-07
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	5e-07
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	1e-06
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	5e-07
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	6e-07
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	6e-07
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	7e-07
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	8e-07
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	8e-07
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	8e-07
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	9e-07
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	1e-06
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	1e-06
1wxb_A	68	Epidermal growth factor receptor pathway substrate	1e-06
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	1e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-06
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	1e-06
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	1e-06
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	1e-06
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	2e-06
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	2e-06
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	3e-06
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	3e-06
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	3e-06
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	4e-06
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	5e-06
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	5e-06
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	5e-06
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	6e-06
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	7e-06
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	8e-06
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	9e-06
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	9e-06
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-05
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	1e-05
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	2e-05
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	2e-05
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	2e-05
1awj_A	77	ITK; transferase, regulatory intramolecular comple	2e-05
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	3e-05
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	4e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	4e-05
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	4e-05
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	5e-05
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	6e-05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	7e-05
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	8e-05
2ea5_A	68	Cell growth regulator with ring finger domain prot	1e-04
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	1e-04
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	1e-04
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	1e-04
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	1e-04
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	1e-04
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	1e-04
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	1e-04
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	1e-04
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	2e-04
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	2e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	2e-04
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	5e-04
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	5e-04
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	5e-04
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	6e-04
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	6e-04
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	6e-04
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	6e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	8e-04

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 85.5 bits (212), Expect = 8e-23
 Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 6  LNDLLECSVCLDRLDTSS---KVLPCQHTFCKKCLEEIVSSH-KELRCPECRVLVECK-V 60
          L ++LEC +C++         K+L C HT C++CLE++++S    +RCP C  +     +
Sbjct: 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71

Query: 61 DELPPNVLLMRILEG 75
           +L  N+ +++    
Sbjct: 72 TQLTDNLTVLKSGPS 86

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 69.2 bits (169), Expect = 2e-15
 Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 47/108 (43%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI--------------------- 130
           ++     D+V +  K ++ W++ ++    G  P S+++                      
Sbjct: 27  EMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVA 86

Query: 131 --------------------------DNNWFYGEVNGTTGAFPMSYVQ 152
                                      + W+    +  TG FP  Y+Q
Sbjct: 87  IKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 134

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 54.2 bits (130), Expect = 6e-10
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDN 132
           +++  + + V +  K+ + W+    +  TG FP  Y+Q   
Sbjct: 97  EVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSG 137

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 65.4 bits (160), Expect = 4e-15
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +LNFK  D++ L  +I+ +W  G V G TG FP+S+V+I
Sbjct: 34  ELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 72

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 66.1 bits (161), Expect = 6e-15
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 6   LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
           + +  +C  C + +        CQH  CK CL+      +   CP CR  +      +  
Sbjct: 49  VEETFQCICCQELV-FRPITTVCQHNVCKDCLDR-SFRAQVFSCPACRYDLGRS-YAMQV 105

Query: 66  NVLLMRILEGLFP 78
           N  L  +L  LFP
Sbjct: 106 NQPLQTVLNQLFP 118

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 64.2 bits (157), Expect = 8e-15
 Identities = 17/39 (43%), Positives = 29/39 (74%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L F++ D++ L  +ID NW+ G ++G +G FP+SYVQ+
Sbjct: 29  ELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQV 67

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 64.2 bits (157), Expect = 9e-15
 Identities = 20/39 (51%), Positives = 30/39 (76%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           DL F K D+++LRR++D NW+ GE+NG +G FP S V++
Sbjct: 23  DLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 61

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 63.3 bits (155), Expect = 1e-14
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +LNFK  D++ L  +I+ +W  G V G TG FP+S+V+I
Sbjct: 20  ELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 58

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 64.9 bits (158), Expect = 2e-14
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV-----DELP 64
           +C +C++ L      LPC HT CK C +  V     L CP CR  V             
Sbjct: 16 CQCGICMEIL-VEPVTLPCNHTLCKPCFQSTV-EKASLCCPFCRRRVSSWTRYHTRRNSL 73

Query: 65 PNVLLMRILEGLFP 78
           NV L  I++  +P
Sbjct: 74 VNVELWTIIQKHYP 87

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 63.0 bits (154), Expect = 2e-14
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+FKK   ++L  +   +W+ G  NG  G  P  Y+ +
Sbjct: 22  ELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV 60

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 63.1 bits (154), Expect = 3e-14
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L FK+ DI+ L  +ID NW+ G ++G +G FP++YV+I
Sbjct: 23  ELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEI 61

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 62.6 bits (153), Expect = 3e-14
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  +K DIV + +++D NW  GE +G  G FP +YV++
Sbjct: 17  ELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 55

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 62.6 bits (153), Expect = 4e-14
 Identities = 17/39 (43%), Positives = 29/39 (74%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L FK+ DI+ L  +ID NW+ G ++G +G FP++YV++
Sbjct: 19  ELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEV 57

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 62.2 bits (152), Expect = 4e-14
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  +K DIV + ++ID NW+ GE +G  G FP +Y+++
Sbjct: 23  ELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIEL 61

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 64.3 bits (156), Expect = 6e-14
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 6   LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
           L     C  C + +        C H  CK CL+      +   CP CR  +  +   + P
Sbjct: 75  LEQSFMCVCCQELV-YQPVTTECFHNVCKDCLQRSF-KAQVFSCPACRHDLG-QNYIMIP 131

Query: 66  NVLLMRILEGLFP 78
           N +L  +L+  FP
Sbjct: 132 NEILQTLLDLFFP 144

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 61.8 bits (151), Expect = 7e-14
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           DL F++ DI+++  K++  W  GE  G  G FP  +V+
Sbjct: 21  DLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 61.6 bits (150), Expect = 9e-14
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+FKK   ++L ++  ++W+ G  NG  G  P  Y+ +
Sbjct: 25  ELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVV 63

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 61.2 bits (149), Expect = 1e-13
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
           +L+F++ D++ L  +  ++W+ GE NG  G  P  Y+ +   
Sbjct: 26  ELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAG 67

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 61.3 bits (149), Expect = 2e-13
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
           +L+F+K + + L RK++ NW+ G +   G  G FP SYVQ+
Sbjct: 33  ELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQV 73

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 60.7 bits (148), Expect = 2e-13
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGT--TGAFPMSYVQI 130
           +++F+K + + L R++D NW+ G + GT   G FP++YV +
Sbjct: 23  EMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 63

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 60.4 bits (147), Expect = 4e-13
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 1  MDEWTLNDL---LECSVCLDRLDTSSKVLPCQHTFCKKCL----EEIVSSHKELRCPECR 53
          M    L ++   + C +CL+ L T    L C H+FC+ CL    ++ +    E  CP CR
Sbjct: 8  MASGILVNVKEEVTCPICLELL-TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 66

Query: 54 VLVECKVDELPPNVLLMRILE 74
            +  + + + PN  +  I+E
Sbjct: 67 --ISYQPENIRPNRHVANIVE 85

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 59.3 bits (144), Expect = 5e-13
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 8  DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVD 61
            L C  C        K+LPC HT C  CLE        ++CP C+       D
Sbjct: 5  QFLRCQQCQAEA-KCPKLLPCLHTLCSGCLE-----ASGMQCPICQAPWPLGAD 52

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 60.6 bits (147), Expect = 6e-13
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECK--VDEL 63
          LN  L C +C      ++ ++ C H+FCK C+   + + K   CP C V V     +  +
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKY--CPICDVQVHKTRPLLNI 69

Query: 64 PPNVLLMRILEGLFP 78
            +  L  I+  L P
Sbjct: 70 RSDKTLQDIVYKLVP 84

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 59.2 bits (144), Expect = 7e-13
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGT--TGAFPMSYVQI 130
           +++F+K + + L R++D NW+ G + GT   G FP++YV +
Sbjct: 22  EMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 62

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 63.9 bits (154), Expect = 8e-13
 Identities = 33/162 (20%), Positives = 51/162 (31%), Gaps = 44/162 (27%)

Query: 9   LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVL 68
           L E      +    +  LP   T   K    +     E+R P     ++  +  LP  VL
Sbjct: 71  LEERFGPDSKSSALAXTLP---TLPAKVYVGVKQEIAEMRIPALNAYMK-SLLSLPVWVL 126

Query: 69  LMRILEGLFPLVVSFIRFFLNIL------------------------------------- 91
           +   +   F             L                                     
Sbjct: 127 MDEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGN 186

Query: 92  ---DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
              +LNFK  D++ L  +I+ +W  G V G TG FP+S+V+I
Sbjct: 187 SKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 228

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 58.9 bits (143), Expect = 1e-12
 Identities = 14/39 (35%), Positives = 26/39 (66%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L F+K+DI+ +  + D + + GE+NG  G FP  +V++
Sbjct: 23  ELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEV 61

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 58.5 bits (142), Expect = 2e-12
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+FK+ DI+ +L  + D NW+  E+NG  G  P +Y+++
Sbjct: 25  ELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 64

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 58.5 bits (142), Expect = 2e-12
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 10/81 (12%)

Query: 1  MDEWTLNDL---LECSVCLDRLDTSSKVLPCQHTFCKKCL----EEIVSSHKELRCPECR 53
          M    L  +   + C +CL+ L        C H+FC+ C+    E   ++  +  CP CR
Sbjct: 8  MASSVLEMIKEEVTCPICLELL-KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66

Query: 54 VLVECKVDELPPNVLLMRILE 74
            V      L PN+ +  I+E
Sbjct: 67 --VPYPFGNLKPNLHVANIVE 85

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 58.1 bits (141), Expect = 2e-12
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           ++  KK DI+ L    + +W+  EVN   G  P +YV+ 
Sbjct: 21  EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 59

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 58.1 bits (141), Expect = 2e-12
 Identities = 15/38 (39%), Positives = 27/38 (71%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+F++  I+ + +K D+ W+ G +NG TG FP +YV+
Sbjct: 33  ELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 70

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 57.5 bits (140), Expect = 3e-12
 Identities = 17/38 (44%), Positives = 21/38 (55%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           DL  K  D V L  K+   W+ G  NG TG FP +YV+
Sbjct: 18  DLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 57.6 bits (140), Expect = 3e-12
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L F++ DI+ +    D NW+ G   G TG  P +YV  
Sbjct: 23  ELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 61

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 58.2 bits (141), Expect = 3e-12
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
           +L FK  +I+I+    D NW+ GE +   G FP ++V  + N
Sbjct: 33  ELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLN 74

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 58.6 bits (142), Expect = 3e-12
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+F K  ++ +  K D +W+ GE+NG TG FP +YV++
Sbjct: 50  ELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 88

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 57.4 bits (139), Expect = 3e-12
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           ++  KK DI+ L    + +W+  EVN   G  P +YV+ 
Sbjct: 5   EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 43

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 57.7 bits (140), Expect = 4e-12
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +LN +K DIVI+  K +  W++G +NG  G FP +YV+ 
Sbjct: 23  ELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEE 61

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 57.8 bits (140), Expect = 4e-12
 Identities = 12/42 (28%), Positives = 26/42 (61%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
           +L FK  D++ +    + +W++G+++   G FP S+V++  N
Sbjct: 26  ELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN 67

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 58.0 bits (140), Expect = 5e-12
 Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP 64
          ++ ++  C +C+++L  +     C    C  C+   ++  +  +CP CR     ++ EL 
Sbjct: 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRA-QCPHCR--APLQLRELV 74

Query: 65 PNVLLMRILEGL 76
                 + + L
Sbjct: 75 NCRWAEEVTQQL 86

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 57.3 bits (139), Expect = 6e-12
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCL-----EEIVSSHKELRCPECRVLVECKVDELP 64
          + C +CL+ L T    L C H+ C+ C+     E + S   +  CP C   +    + L 
Sbjct: 13 VTCPICLELL-TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG--ISYSFEHLQ 69

Query: 65 PNVLLMRILE 74
           N  L  I+E
Sbjct: 70 ANQHLANIVE 79

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 56.4 bits (137), Expect = 7e-12
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L F++ DI+ +    D NW+ G   G TG  P +YV 
Sbjct: 19  ELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 56.5 bits (137), Expect = 8e-12
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
           +L FK  +++ +    D NW+ GE +  TG FP ++V  D +
Sbjct: 21  ELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTDLS 62

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 56.6 bits (137), Expect = 1e-11
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           ++  KK DI+ L    + +W+  EVN   G  P +YV+ 
Sbjct: 33  EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 71

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 56.2 bits (136), Expect = 1e-11
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           ++  KK DI+ L    + +W+  EVN   G  P +YV+ 
Sbjct: 15  EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 53

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 56.0 bits (136), Expect = 1e-11
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L FK+ D++ L  K D NW+ G++N   G FP +YV 
Sbjct: 18  ELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 57.1 bits (138), Expect = 1e-11
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP 64
          T++DLL C +C +  + +  +  C H +C  C+ + +S   +  CP C   V     +L 
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQ--CPTCC--VTVTEPDLK 73

Query: 65 PNVLLMRILEGL 76
           N +L  +++ L
Sbjct: 74 NNRILDELVKSL 85

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 56.7 bits (137), Expect = 1e-11
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  K  DI+ +  +++  W+ G +NG TG FP ++++ 
Sbjct: 34  ELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 72

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 55.7 bits (135), Expect = 1e-11
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  KK DI+ L    + +W+  EVNG  G  P +Y++ 
Sbjct: 22  ELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 56.2 bits (136), Expect = 1e-11
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 92  DLNFKKDDIVILRRKID-NNWFYGEVNGTTGAFPMSYVQI 130
            L FK++DI+ +  K   N WF G++NG  G+FP+ +V+I
Sbjct: 26  LLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEI 65

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 55.7 bits (135), Expect = 1e-11
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L F++ D + +    D NW+ G  +G TG FP +YV  
Sbjct: 18  ELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 58.1 bits (140), Expect = 2e-11
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 6   LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
           L + L+C +C +     +  L C H+FC  C+ E     +++ CP CR  ++ K   L  
Sbjct: 61  LENELQCIICSEYF-IEAVTLNCAHSFCSYCINE--WMKRKIECPICRKDIKSKTYSLVL 117

Query: 66  NVLLMRILEGL 76
           +  + +++  L
Sbjct: 118 DNCINKMVNNL 128

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
          L  LL CS C + L     +  C+H FC  C+ + + +     CP C       + +L  
Sbjct: 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT----GCPVCY--TPAWIQDLKI 72

Query: 66 NVLLMRILE 74
          N  L  +++
Sbjct: 73 NRQLDSMIQ 81

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQID 131
           +++F  DDI+     ID+ W+ G   G  G FP +YV++ 
Sbjct: 33  EISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 72

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 55.8 bits (135), Expect = 2e-11
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           L+  K DI+ + R  +  W+ G +NG TG FP +YV+ 
Sbjct: 27  LSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVRE 64

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 56.0 bits (135), Expect = 2e-11
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           ++  KK DI+ L    + +W+  EVN   G  P +YV+ 
Sbjct: 7   EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 45

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 55.7 bits (135), Expect = 2e-11
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           DL  +  DI+ L    + +W+ G++    G FP ++VQ 
Sbjct: 23  DLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQR 61

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 55.9 bits (135), Expect = 2e-11
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
           L   + CS+C   L  ++ +  C HTFCK C+          RCP+C ++V 
Sbjct: 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN--RCPKCNIVVH 61

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 55.3 bits (134), Expect = 2e-11
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQID 131
           +++F  DDI+     ID+ W+ G   G  G FP +YV++ 
Sbjct: 25  EISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 55.3 bits (134), Expect = 2e-11
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L     +IV + +K ++NW     NG  G  P +Y++
Sbjct: 23  ELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLE 60

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 55.4 bits (134), Expect = 2e-11
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQID 131
           +L FK  +I+ +    D NW+ GE +   G FP ++V  D
Sbjct: 33  ELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTAD 72

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 55.9 bits (135), Expect = 2e-11
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
            L  +  DIV + R   N  + GEVNG  G FP ++V+I
Sbjct: 34  ALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 72

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 55.9 bits (135), Expect = 2e-11
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 92  DLNFKKDDIVILRRKID--NNWFYGEVNGTTGAFPMSYVQIDN 132
           DLNF+  D + +  K D   +W+ G++ G TG FP +YV +++
Sbjct: 33  DLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNS 75

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 6   LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
           L+  L C +CLD L  +     C H FC  C+   + S     CP CR  +      L P
Sbjct: 51  LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKL-VSKRSLRP 108

Query: 66  NVLLMRILEGLFP 78
           +     ++  ++P
Sbjct: 109 DPNFDALISKIYP 121

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 55.0 bits (133), Expect = 3e-11
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
            L+F + + +++ R+   +W++GE  G  G  P ++V 
Sbjct: 23  QLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVG 60

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 55.5 bits (134), Expect = 3e-11
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 92  DLNFKKDDI--VILRRKIDNNWFYGEVNGTTGAFPMSYVQ-IDNNWFYGEVNGTTGAFPM 148
            L+F + D+  ++    ++  W +G   G +G FP   VQ      F       +G+ P 
Sbjct: 24  LLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPDFSFSKEQRSGSGPS 83

Query: 149 S 149
           S
Sbjct: 84  S 84

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 55.5 bits (134), Expect = 3e-11
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+  K   VI+  K  + W+ G  NG  G FP +YV 
Sbjct: 33  ELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 70

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 54.5 bits (132), Expect = 4e-11
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+F K D++ + R  +  W+ G  NG TG FP +YV+ 
Sbjct: 22  ELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 54.5 bits (132), Expect = 4e-11
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  K  DI+ +  +++  W+ G +NG TG FP ++++ 
Sbjct: 23  ELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 61

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 54.2 bits (131), Expect = 5e-11
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
            L  +  DIV + R   N  + GEVNG  G FP ++V+I
Sbjct: 19  ALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 57

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 54.6 bits (132), Expect = 5e-11
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
            LNF K DI+ +  +   NW++GEV+G  G FP SYV+I
Sbjct: 26  HLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKI 63

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 54.2 bits (131), Expect = 6e-11
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+    DI+ +  + ++ W+  E NG  G  P SY++
Sbjct: 24  ELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLE 61

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 53.8 bits (130), Expect = 6e-11
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+F K D++ + R  +  W+ G  NG TG FP +YV+ 
Sbjct: 20  ELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 54.7 bits (132), Expect = 6e-11
 Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDI--VILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+   D++  V     +D++W  GE     G  P++Y+++
Sbjct: 33  ELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLEL 73

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 53.7 bits (130), Expect = 7e-11
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+F  +DI+ + ++  + W+ G + G  G FP +YV  
Sbjct: 21  ELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 53.8 bits (130), Expect = 8e-11
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  K  DI+ +  +++  W+ G +N   G FP ++V+ 
Sbjct: 23  ELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 61

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 53.7 bits (130), Expect = 8e-11
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L FK+ D +I+ +K    W+ GE+NG  G  P +YVQ 
Sbjct: 19  ELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQD 57

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 53.8 bits (130), Expect = 8e-11
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDI--VILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  K+ DI  +I +  ID  W+ GE+NG  G FP ++V++
Sbjct: 23  ELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 54.1 bits (130), Expect = 9e-11
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 1  MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
           +      + EC++CL         LPC+H FC  C++      K  RC  CR   E   
Sbjct: 7  GNTAPSLTVPECAICLQTCVHPV-SLPCKHVFCYLCVKGASWLGK--RCALCR--QEIPE 61

Query: 61 DELPPN 66
          D L   
Sbjct: 62 DFLDSG 67

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 54.4 bits (131), Expect = 1e-10
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
          + D L C +C D +  +  +  C +++C +C+   +    E  CP C    +   D L  
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ-NDVSPDALIA 68

Query: 66 NVLLMRILE 74
          N  L + + 
Sbjct: 69 NKFLRQAVN 77

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 53.5 bits (129), Expect = 1e-10
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
            L  +  ++V + +   +  + GE NG  G FP ++V++
Sbjct: 24  ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRL 62

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 53.4 bits (129), Expect = 1e-10
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L  K  DI+ +  +++  W+ G +N   G FP ++V+
Sbjct: 17  ELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 53.5 bits (129), Expect = 2e-10
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKI--DNNWFYGEVNGTTGAFPMSYVQ 129
           +L+ ++ D+V +  +I  D  W+ GE NG  G FP +YV+
Sbjct: 23  ELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 52.7 bits (127), Expect = 2e-10
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDI--VILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  K+ DI  +I +  ID  W+ GE+NG  G FP ++V++
Sbjct: 25  ELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 65

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 52.7 bits (127), Expect = 3e-10
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDI--VILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  K+ DI  +I +  ID  W+ GE+NG  G FP ++V++
Sbjct: 18  ELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 58

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 52.7 bits (127), Expect = 3e-10
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGT---TGAFPMSYVQI 130
           +L F + +++I+  + D  W+ G + G     G FP+S+V I
Sbjct: 26  ELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 52.4 bits (126), Expect = 3e-10
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
            L  KK DI+ +  K     + G +N   G F   YV +
Sbjct: 27  SLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDV 65

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 52.3 bits (126), Expect = 3e-10
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           ++ F+K   V + RK    W+Y    G  G  P SY++
Sbjct: 24  EIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK 61

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 53.3 bits (128), Expect = 4e-10
 Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVN---GTTGAFPMSYVQI 130
           +L     + + +    +  WF  +     G  G  P+ +V I
Sbjct: 21  ELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSI 62

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 51.8 bits (125), Expect = 4e-10
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L F+  ++V +    + +W+ G ++   G FP +YV  
Sbjct: 17  ELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 52.3 bits (126), Expect = 4e-10
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 92  DLNFKKDD-IVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+F        +    +  W  G +NG TG  P +YV+ 
Sbjct: 26  ELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 51.9 bits (125), Expect = 5e-10
 Identities = 8/42 (19%), Positives = 23/42 (54%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
           +L+ +  ++V +  K ++ W++   +   G  P +Y++  N+
Sbjct: 24  ELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNS 65

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 51.1 bits (123), Expect = 7e-10
 Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQIDN 132
           +L F ++D +I    +D++W+ GE+  +G+ G FP +YV + N
Sbjct: 16  ELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 58

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 51.7 bits (124), Expect = 7e-10
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
          + D L C +C D +  +  +  C +++C +C+   +    E  CP C 
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 59

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 51.0 bits (123), Expect = 9e-10
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L     +I+   RK D  W+ G++NG  G FP ++V+ 
Sbjct: 17  ELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVRE 55

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 54.8 bits (131), Expect = 1e-09
 Identities = 15/101 (14%), Positives = 32/101 (31%)

Query: 30  HTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRFFLN 89
                       +S   +                  N+ L   L     +    +    +
Sbjct: 203 QMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYD 262

Query: 90  ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
              L  KK   V++ +K+ N  +  E++G  G+ P +Y++ 
Sbjct: 263 PTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRF 303

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 49.8 bits (118), Expect = 5e-08
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSY 150
           DL F++ + + +  K + +W+      GTTG  P +YVQI   +     +       +  
Sbjct: 163 DLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGS 222

Query: 151 VQFVWY 156
                 
Sbjct: 223 SGGGAE 228

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKEL-RCPECRVLVECKVDELP 64
          +  +LEC +CL+ +        C H FCK C+ ++++  K   +CP C+   +     L 
Sbjct: 18 MQKILECPICLELI-KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCK--NDITKRSLQ 74

Query: 65 PNVLLMRILEGLFPLVVSF 83
           +    +++E L  ++ +F
Sbjct: 75 ESTRFSQLVEELLKIICAF 93

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 50.8 bits (122), Expect = 1e-09
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTT-----GAFPMSYVQID 131
           DLNF+KD  +I+    D  W++GE   +      G FP S+V + 
Sbjct: 23  DLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ 67

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKI--DNNWFYGEVNGTTGAFPMSYVQ 129
           +++F   DI+ +  K   +  W YG   G  G FP +YV+
Sbjct: 21  EMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 50.5 bits (121), Expect = 2e-09
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
           L D  EC +C+D    +  +LPC H+FC+KC+++    H+   CP CR+ + 
Sbjct: 11 QLTDEEECCICMD--GRADLILPCAHSFCQKCIDKWSDRHRN--CPICRLQMT 59

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 50.3 bits (121), Expect = 2e-09
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           DL F + + +++ +K D  W+ G +   +G FP +YV+ 
Sbjct: 24  DLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKP 61

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP 64
           L    EC +CL  L   +   PC H FCK C+ + +      +CP          ++L 
Sbjct: 14 PLESKYECPICLMAL-REAVQTPCGHRFCKACIIKSIRD-AGHKCPVDN--EILLENQLF 69

Query: 65 PNVLLMRILEGLF 77
          P+    R +  L 
Sbjct: 70 PDNFAKREILSLM 82

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 50.1 bits (120), Expect = 3e-09
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV-SSHKELRCPECR 53
          + C +CLD L      + C H FC KC+ +I  +S    +CP C+
Sbjct: 21 VICPICLDIL-QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCK 64

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 49.7 bits (119), Expect = 3e-09
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
           C +CL+     S  LPC H FC  C+   +  +    CP C+V VE
Sbjct: 7  RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT--CPLCKVPVE 51

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 49.4 bits (119), Expect = 3e-09
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNN-WFYGEVNGTTGAFPMSYVQ 129
           +++    DI+ + R  D + W YGE +G  G FP SY +
Sbjct: 16  EISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 50.2 bits (120), Expect = 3e-09
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
           +++F     V +  K ++ W+Y       G  P  Y+ +D N
Sbjct: 24  EISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDEN 65

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 49.6 bits (119), Expect = 3e-09
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 92  DLNFKKDD-IVILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
            L+FK+ D I +L  +  + W YGE       G FP SY ++
Sbjct: 24  LLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 49.5 bits (119), Expect = 4e-09
 Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 2/40 (5%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
           L   + DIV +  K    W   E      TG  P  +V  
Sbjct: 18  LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY 57

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 51.2 bits (122), Expect = 4e-09
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
           +L+ K+ DI+ IL +K    W+ GE+ G  G FP +YV+ D +
Sbjct: 21  ELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS 63

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 49.6 bits (119), Expect = 4e-09
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 92  DLNFKKDDIV-ILRR--KIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L F + DI+ IL +       W+   ++G  G  P + +QI
Sbjct: 23  ELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 49.1 bits (118), Expect = 4e-09
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDI--VILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L F++ +I  +I +   +  W+ GE+NG  G FP ++  
Sbjct: 22  ELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAV 61

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 48.9 bits (117), Expect = 6e-09
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
            L+F + D++ +L  +  + W YGE   +   G FP SY ++
Sbjct: 23  LLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKL 64

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 48.8 bits (117), Expect = 6e-09
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
           DL FKK DI+ +R K +  W+  E   G  G  P+ YV+
Sbjct: 19  DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 57

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 48.9 bits (117), Expect = 9e-09
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKID-NNWFYGEVNGTTGAFPMSYVQ 129
           +L F   DI+ +  +ID + ++YGE+NG  G  P ++++
Sbjct: 30  ELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLE 68

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 52.1 bits (124), Expect = 9e-09
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56
           +     +    C +C +  D   K+ PC H  C  CL     S  +  CP CR  +
Sbjct: 324 LYCEMGSTFQLCKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFCRCEI 377

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 47.9 bits (115), Expect = 1e-08
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
           DL FKK DI+ +R K +  W+  E   G  G  P+ YV+
Sbjct: 17  DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 48.4 bits (115), Expect = 1e-08
 Identities = 12/59 (20%), Positives = 22/59 (37%)

Query: 7  NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
          + +  C++C   L        C       C+ +   S+ E RCP C      ++ +  P
Sbjct: 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSGP 71

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 48.2 bits (115), Expect = 1e-08
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
            L  +  D+V +     D  ++YGE+ G  G  P   + 
Sbjct: 30  RLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLD 68

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQIDNN-----WFYGEVN 140
           DL+FKK +   +    + +W+       G +G  P +YV   ++     W++G++ 
Sbjct: 43  DLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSIQAEEWYFGKMG 98

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 47.6 bits (114), Expect = 2e-08
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
           +L+ +K + + +  K  + W  G     G TG FP  YV 
Sbjct: 23  ELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
           +L  + DD +++  + ++ W+       G  G FP  Y  
Sbjct: 22  ELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 61

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 47.6 bits (114), Expect = 2e-08
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
           +L  ++ D V + ++ D+ WF G        G FP +YV 
Sbjct: 23  ELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVA 62

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYVQIDNN 133
           +L   + DI+ +  K + +W+YG +  G  G FP ++V  +  
Sbjct: 22  ELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETL 64

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 92  DLNFKKDDIVILRRKIDNN---WFYGEVNGTTGAFPMSYVQI 130
           +L+F+K DI+ +  +       W+   ++G  G  P + ++I
Sbjct: 19  ELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKI 60

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 47.2 bits (113), Expect = 3e-08
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVN--GTTGAFPMSYVQI 130
           ++F+  D ++  + ID+ W YG V   G TG  P +Y++ 
Sbjct: 23  VSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 36.0 bits (84), Expect = 4e-04
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 129 QIDNNWFYGEVN--GTTGAFPMSYVQFV 154
            ID+ W YG V   G TG  P +Y++FV
Sbjct: 36  PIDDGWMYGTVQRTGRTGMLPANYIEFV 63

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 47.2 bits (113), Expect = 3e-08
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 21/63 (33%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYV 151
           DL F+K D++ + +K D+                      N+W+ G VNG  G FP +YV
Sbjct: 19  DLPFRKGDVITILKKSDS---------------------QNDWWTGRVNGREGIFPANYV 57

Query: 152 QFV 154
           + V
Sbjct: 58  ELV 60

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 47.2 bits (112), Expect = 3e-08
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 8/50 (16%)

Query: 10 LECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPECR 53
          + C +C+D      +         C H FC +CL + + +     CP CR
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTCR 63

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 47.3 bits (113), Expect = 3e-08
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNG-TTGAFPMSYVQI 130
           L F +  ++    K    W+ G+        FP +YV+ 
Sbjct: 24  LTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVED 62

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 46.9 bits (112), Expect = 3e-08
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 11 ECSVCLDRLDTSSK---VLPCQHTFCKKCLEEIVSSHKELRCPECR 53
           C +CL+ + TS     VLPC H   + C EE++      RCP C 
Sbjct: 7  GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY--RCPLCS 50

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 47.3 bits (113), Expect = 3e-08
 Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 2/40 (5%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQI 130
           L   + DIV +  K    W   E      TG  P  +V  
Sbjct: 22  LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY 61

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 46.8 bits (112), Expect = 3e-08
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
           L  + DD +++  + ++ W+       G  G FP  Y  
Sbjct: 20  LELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 58

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 46.9 bits (112), Expect = 4e-08
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGA-FPMSYVQ 129
           +L F K  I+    K +  W+ G+  G     FP +YV+
Sbjct: 22  ELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVE 60

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 47.0 bits (112), Expect = 4e-08
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVN--GTTGAFPMSYVQ 129
           +L F+K D+V IL    + +W+  + +  G  G      ++
Sbjct: 33  ELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALR 73

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 46.4 bits (111), Expect = 5e-08
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L  +  +I+  +++  +  W  GE+NG  G FP ++V+ 
Sbjct: 17  ELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKE 56

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 46.4 bits (111), Expect = 5e-08
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTG-AFPMSYVQ 129
           +L F K  I+    K D  W+ G+  G     FP +YV+
Sbjct: 19  ELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 57

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 47.2 bits (112), Expect = 5e-08
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFY-GEVNGTTGAFPMSYVQ 129
           +L FK+  I+ +    D + FY GE     G  P + V 
Sbjct: 41  ELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVS 79

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 46.6 bits (111), Expect = 6e-08
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
            L+F + D++ +L  +  + W YGE       G FP SY ++
Sbjct: 24  LLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 49.6 bits (117), Expect = 6e-08
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
            L  +  ++V + +   +  + GE NG  G FP ++V++
Sbjct: 255 ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRL 293

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
           DL FKK DI+ +R K +  W+  E   G  G  P+ YV+
Sbjct: 150 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 188

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 47.6 bits (113), Expect = 7e-08
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGA---FPMSYVQIDN 132
           +L+    + + +    D  WF  +     G     P+SYV+I +
Sbjct: 19  ELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIID 62

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 47.4 bits (112), Expect = 7e-08
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPMSYVQI 130
            L+ +  D+V ++     +W+ G +       G FP S++ I
Sbjct: 75  QLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHI 115

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 46.7 bits (111), Expect = 7e-08
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 2  DEWTLNDLLECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
           E  +   LEC VC +   L  S + LPC H F   C+   +  H    CP CR
Sbjct: 8  TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD--SCPVCR 59

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 46.0 bits (109), Expect = 9e-08
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 8/50 (16%)

Query: 10 LECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPECR 53
          + C +C+D      +         C H FC +CL + + +     CP CR
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCR 58

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
          T+ D  +C  C   L  S K   C H FC+ C+  ++SS    +C  C+
Sbjct: 11 TVEDKYKCEKCHLVL-CSPKQTECGHRFCESCMAALLSSSSP-KCTACQ 57

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 18/104 (17%), Positives = 34/104 (32%)

Query: 27  PCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRF 86
                     + E   ++ + +       V          +   +        +   +  
Sbjct: 190 HGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPC 249

Query: 87  FLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
             +   L  +  DIV + R   N  + GEVNG  G FP ++V+I
Sbjct: 250 AYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 293

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYVQ 129
           DL FKK +I+++  K +  W+     +G  G  P+ YV+
Sbjct: 141 DLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVE 179

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 45.5 bits (108), Expect = 1e-07
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV-SSHKELRCPEC 52
          + C +CLD L      + C H FC KC+ +I  +S    +CP C
Sbjct: 21 VICPICLDIL-QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGT------TGAFPMSYVQI 130
            LN +  D++ +  +  +  + G ++ +       G FP   V++
Sbjct: 35  ALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEV 79

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
            C +C      +  V  C+H FC+ C  E   +    RC  C 
Sbjct: 16 FRCFICRQAF-QNPVVTKCRHYFCESCALEHFRATP--RCYICD 56

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYG-EVNGTTGAFPMSYVQ 129
           DL FKK +I+++  K  + W+   +  G  G  P +Y++
Sbjct: 26  DLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE 64

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 92  DLNFKKDDIV-ILRR---KIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+   +  + IL       +  W+  EVNG  G  P +Y++
Sbjct: 29  ELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIR 70

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 44.8 bits (106), Expect = 2e-07
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 9  LLECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPECR 53
          ++ C +C+D      +         C H FC +CL + + +     CP CR
Sbjct: 3  MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTCR 51

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 45.0 bits (107), Expect = 2e-07
 Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
           +++F K D+ I+  ++++ W +         G      V+
Sbjct: 24  EISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 63

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 45.0 bits (107), Expect = 2e-07
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
           DL+F K +   +    + +W+       G TG  P +YV 
Sbjct: 31  DLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 70

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 7/65 (10%), Positives = 21/65 (32%)

Query: 10  LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLL 69
           L C +     +       C H F +  ++  +  +    CP+        + +   + ++
Sbjct: 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIM 241

Query: 70  MRILE 74
               +
Sbjct: 242 ELRCK 246

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNG-----TTGAFPMSYVQI 130
           L+     ++++ +K  + W+ GE+         G FP S+V++
Sbjct: 24  LSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP 64
           L    EC +CL  L  +    PC H FCK C+ + +      +CP    +     ++L 
Sbjct: 14 PLESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGH-KCPVDNEI--LLENQLF 69

Query: 65 PNVLLMRILEGLF 77
          P+    R +  L 
Sbjct: 70 PDNFAKREILSLM 82

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 44.1 bits (105), Expect = 3e-07
 Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQIDN 132
            L+  K + + +L    +  W   +     G  P +Y+   N
Sbjct: 21  TLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 44.1 bits (105), Expect = 4e-07
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDIVILRRKID-NNWFYGEVN-GTTGAFPMSYVQI 130
           +L+FK  D +    + D   W  G ++ G  G +P +YV+ 
Sbjct: 19  ELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA 59

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 44.2 bits (105), Expect = 4e-07
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 20/63 (31%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYV 151
           +L+F +  I+ +  K +                    Q D+ ++ GE NG  G FP   V
Sbjct: 24  ELSFPEGAIIRILNKEN--------------------QDDDGFWEGEFNGRIGVFPSVLV 63

Query: 152 QFV 154
           + +
Sbjct: 64  EEL 66

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 44.6 bits (106), Expect = 4e-07
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 11/63 (17%)

Query: 7  NDLLECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP 64
             + C +C         +  LPC H F K C+   +       CP CR          P
Sbjct: 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG--TCPVCRC-------MFP 88

Query: 65 PNV 67
          P +
Sbjct: 89 PPL 91

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 44.0 bits (104), Expect = 4e-07
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L+      V +     + W+ G  NG  G FP +YV 
Sbjct: 17  ELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVL 54

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 46.6 bits (110), Expect = 5e-07
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 89  NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ-IDNN 133
              +L F++ D + +    D NW+ G  +G TG FP +YV  ++ N
Sbjct: 171 EDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRN 216

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE 138
           +L+FK+ DI+ +L  + D NW+  E+NG  G  P +Y+++  + ++  
Sbjct: 16  ELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFG 63

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 43.7 bits (104), Expect = 5e-07
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
           +L  KK D++ + R+  + W  G++      G  P +Y++
Sbjct: 17  ELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 43.8 bits (104), Expect = 6e-07
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPM 148
           +L  KK DIV + R   + W   ++      G  P +Y+             T    P+
Sbjct: 19  ELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMT--------PYKDTRNTVPV 69

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 43.5 bits (103), Expect = 6e-07
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHK-ELRCPEC 52
            CSVCL+ L     ++ C H FCK C+       + +  CP C
Sbjct: 16 ASCSVCLEYL-KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 44.0 bits (104), Expect = 7e-07
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 92  DLNFKKDDI--VILRRKIDNNWFYGE-VNGTTGAFPMSYVQIDNN 133
           +LNF+K +   VI + + D  W+  +   G  G  P +YV + ++
Sbjct: 33  ELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 77

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 45.1 bits (106), Expect = 8e-07
 Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 6   LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP- 64
           L     CS C + L        C H +C  CL  I+SS  +  C  C      +      
Sbjct: 28  LEAKYLCSACRNVL-RRPFQAQCGHRYCSFCLASILSSGPQ-NCAACVHEGIYEEGISIL 85

Query: 65  ------PNVLLMRILEGL 76
                 P+    R +E L
Sbjct: 86  ESSSAFPDNAARREVESL 103

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 43.4 bits (103), Expect = 8e-07
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
           +L  K  D V IL  K   +W+  ++  +G +G  P  +++ 
Sbjct: 22  ELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 63

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 43.5 bits (102), Expect = 8e-07
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 7  NDLLECSVCLDRLDTSSK---VLPCQHTFCKKCLEEIVSSHKELRCPECR 53
           D +EC +C++ L+          C +  C+ C   I  + +   CP CR
Sbjct: 9  EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR-TDENGLCPACR 57

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 43.5 bits (103), Expect = 9e-07
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQIDN 132
           DL+F K +   +      +W+       G TG  P +YV   +
Sbjct: 22  DLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 42.9 bits (102), Expect = 1e-06
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
           +L  K  D V IL  K   +W+  ++  +G +G  P  +++ 
Sbjct: 18  ELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
           +++F K D+ I+  ++++ W +         G      V+
Sbjct: 22  EISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 7/41 (17%), Positives = 17/41 (41%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDN 132
           +L+  KD+++ +       W     +G  G  P + +   +
Sbjct: 23  ELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEAS 63

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 42.6 bits (101), Expect = 1e-06
 Identities = 5/41 (12%), Positives = 15/41 (36%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDN 132
           +L   + + + +       W      G +G  P + ++  +
Sbjct: 23  ELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLS 63

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 3/71 (4%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
              + C +C   L        C+H FC+ C+   +       CP CR       D   P
Sbjct: 20 FVKSISCQICEHILADP-VETSCKHLFCRICILRCLKVMGS-YCPSCRYPCF-PTDLESP 76

Query: 66 NVLLMRILEGL 76
              + IL  L
Sbjct: 77 VKSFLNILNSL 87

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQIDN 132
           DL+F K +   +    + +W+       G TG  P  Y+   +
Sbjct: 21  DLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 5  TLNDLLECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDE 62
           LN    C+VCL+      ++   PC+H F +KCL + +   K   CP C + V  ++ +
Sbjct: 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK--VCPLCNMPV-LQLAQ 67

Query: 63 LPP 65
          L  
Sbjct: 68 LSG 70

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 42.6 bits (101), Expect = 1e-06
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDD-IVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
           DL F K D + I+    D NW+  +   G  G  P +YVQ
Sbjct: 27  DLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ 66

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
           DL  +K D   +  + +  W+     NG  G  P +YV 
Sbjct: 24  DLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVT 62

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 93  LNFKKDDIV-ILRRKIDNNWFYGE-VNGTTGAFPMSYVQI 130
           L   + +I+ +    +   W  G+   G  G  P  YV+I
Sbjct: 27  LTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEI 66

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 41.9 bits (99), Expect = 3e-06
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 92  DLNFKKDDI--VILRRKIDNNWFYGE-VNGTTGAFPMSYVQIDNN 133
           +LNF+K +   VI + + D  W+  +   G  G  P +YV + ++
Sbjct: 22  ELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 66

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 12/72 (16%)

Query: 11 ECSVCLDRLDTSS--KVLPCQHTFCKKCLEEIVSSH------KELRCPECRVLVECKVDE 62
           C +CL          +  CQ  FC  CL++ V           + CP+      C    
Sbjct: 7  GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDA----ACPKQG 62

Query: 63 LPPNVLLMRILE 74
                +  ++ 
Sbjct: 63 HLQENEIECMVA 74

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 41.8 bits (99), Expect = 3e-06
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQIDN 132
           DL  ++    I+  K D +W+      G+ G  P +YV    
Sbjct: 18  DLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 43.6 bits (102), Expect = 4e-06
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQI 130
           DL F++ + + +  K + +W+      GTTG  P +YVQI
Sbjct: 134 DLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI 173

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 42.2 bits (99), Expect = 5e-06
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDIVILRRKIDNNWFY-GE-VNGTTGAFPMSYVQI 130
           +L       + +   +D + FY GE ++G  G  P ++V  
Sbjct: 39  ELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDF 79

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 41.2 bits (97), Expect = 5e-06
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 92  DLNFKKDDIVILRRKID-----NNWFYGEV-NGTTGAFPMSYVQI 130
           ++  KK D++ +  K D     ++W+     NG  G  P +Y++I
Sbjct: 24  EVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 44.4 bits (103), Expect = 5e-06
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDD-IVILRRKIDNNWFYGEV-NGTTGAFPMSYVQI 130
           +L+FK  D +  +  + +  W  G + NG  G +P +YV+ 
Sbjct: 444 ELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEA 484

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 41.2 bits (97), Expect = 6e-06
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 92  DLNFKKDDIVILRRKID-----NNWFYGEV-NGTTGAFPMSYVQI 130
           ++  KK D++ +  K D     ++W+     NG  G  P +Y++I
Sbjct: 31  EVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 75

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 41.3 bits (97), Expect = 7e-06
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 6/58 (10%)

Query: 93  LNFKKDDIVILRRK----IDNNWFYGEV--NGTTGAFPMSYVQIDNNWFYGEVNGTTG 144
           L     D + +           W YG     G +G  P +Y+   +       +G++G
Sbjct: 33  LELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECSTWIFHGSSG 90

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 41.4 bits (97), Expect = 8e-06
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 92  DLNFKKDDIVILRRKI-----DNNWFYGEV-NGTTGAFPMSYVQ 129
           +L  ++ D V +  +      D  W+ G++ +G  G FP +YV 
Sbjct: 45  ELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 41.3 bits (97), Expect = 9e-06
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 92  DLNFKKDDIV-ILRRKIDNN---WFYGEVNG-TTGAFPMSYVQI 130
           +++F+  D++ +  ++       W    ++G TTG  P +YV+I
Sbjct: 33  EISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKI 76

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 40.8 bits (96), Expect = 9e-06
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 4/41 (9%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGE-VNGTTGAFPMSYVQI 130
           +++F++++I+ +    I+  W+     NG TG  P +YVQ+
Sbjct: 23  EISFEQNEILQVS--DIEGRWWKARRANGETGIIPSNYVQL 61

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 8/46 (17%)

Query: 92  DLNFKKDDIVILRRKIDNNW--------FYGEVNGTTGAFPMSYVQ 129
           ++  KK DI+ L    + +W          G+     G  P +YV+
Sbjct: 17  EVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 20/75 (26%)

Query: 11  ECSVCLDRLDTSS-----------------KVLPCQHTFCKKCLEEIVSS---HKELRCP 50
           +C +C+++L  +S                 ++  C H F   CL  +  +      L+CP
Sbjct: 27  DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 51  ECRVLVECKVDELPP 65
            C+ +   K    P 
Sbjct: 87  SCKTIYGEKTGTQPW 101

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 92  DLNFKKDDIVILRRKID-----NNWFYGE-VNGTTGAFPMSYVQI 130
           ++  KK D++ +  K D     ++W+     NG  G  P +Y++I
Sbjct: 31  EVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 75

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 9/50 (18%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE---------VNGTTGAFPMSYVQIDN 132
           DL+F+  D + +       W+                 G  P +YV  D+
Sbjct: 23  DLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDS 72

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQIDN 132
           DL+F+K D +++  +    W+          G  P +YV   +
Sbjct: 41  DLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD 82

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
           +L  + D+   L    + +W+  +  NG  G  P SY+ 
Sbjct: 36  ELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 74

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 10/65 (15%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYG--EVNGTTGAFPMS 149
           DL     D++++ R         E                  W  G  E     G FP +
Sbjct: 27  DLELLPGDVLVVSRAALQALGVAE--------GGERCPQSVGWMPGLNERTRQRGDFPGT 78

Query: 150 YVQFV 154
           YV+F+
Sbjct: 79  YVEFL 83

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 39.3 bits (92), Expect = 4e-05
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
           +L  ++++   L    + +W+  +  NG  G  P SY+ 
Sbjct: 35  ELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLV 73

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 1   MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
           + E   + +  C++C   L        C       C+ +   S+ E RCP C 
Sbjct: 172 IRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCN 224

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 39.2 bits (91), Expect = 4e-05
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYG--EVNGTTGAFPMSYVQ 129
            L     DIV + + + ++NW+ G        G FP + V 
Sbjct: 34  FLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 74

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGE-VNGTTGAFPMSYVQI 130
            ++  + + + ++     + W       G  G  P SY+++
Sbjct: 23  TISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRV 63

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 38.4 bits (89), Expect = 6e-05
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 93  LNFKKDDIV-ILRRKIDNNWFYGE--VNGTTGAFPMSYVQ 129
           L     DIV + + + ++NW+ G        G FP + V 
Sbjct: 27  LRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 39.8 bits (92), Expect = 7e-05
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 10 LECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECK 59
          + C +C+D      +         C H FC +CL +  S      CP CR  +  K
Sbjct: 8  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD--SLKNANTCPTCRKKINHK 61

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 37.5 bits (88), Expect = 8e-05
 Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 93  LNFKKDDIVILRRKIDNNW---FYGEVNGTTGAFPMSYVQI 130
           +     D + L  +   +       +  G TG  P +Y++I
Sbjct: 18  ITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 2  DEWTLNDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECRVLVECKV 60
           E +  +  +C VC +    +  +LPC+HT  C  C++         +CP CR  V+   
Sbjct: 8  VEPSEENSKDCVVCQNG-TVNWVLLPCRHTCLCDGCVKYFQ------QCPMCRQFVQESF 60

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVN 117
           ++  KK DI+ L    + +W+  EVN
Sbjct: 37  EVTMKKGDILTLLNSTNKDWWKVEVN 62

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTT----GAFPMSYVQIDNN 133
              F++   + +  +  N W+Y ++        G  P +Y++  N+
Sbjct: 25  TAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS 70

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 4/49 (8%)

Query: 11 ECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
          +C++CL  L+    V  LPC H F + C+++ + ++K  +CP CRV +E
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK--KCPICRVDIE 62

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGE-VNGTTGAFPMSYVQIDNN 133
           +L  ++ +++ ++      +W       G  G  P  Y+Q   +
Sbjct: 29  ELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTS 72

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 22/62 (35%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQ 152
           +  ++ D+V++ ++ D  W YGE                        +G TG FP  + +
Sbjct: 34  VTLQQADVVLVLQQEDG-WLYGER---------------------LRDGETGWFPEDFAR 71

Query: 153 FV 154
           F+
Sbjct: 72  FI 73

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
           DL FKK DI+ +R K +  W+  E   G  G  P+ YV+
Sbjct: 152 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 190

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGT-----TGAFPMSYVQ 129
           +L+F+  D+  + RK +  W+   ++        G  P +Y+ 
Sbjct: 26  ELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLA 68

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQ 129
           DL F+K + + +  +    W+  +    G  G  P ++V 
Sbjct: 22  DLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVA 60

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 7  NDLLECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPECR 53
          ++   C VC+   ++   +  LPC H F  KC+++ + +++   CP CR
Sbjct: 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR--TCPICR 67

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 8  DLLECSVCLDRLDTSSK----VLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56
          D   C  C      +      V  C HT C+ C++ +        CPEC   +
Sbjct: 2  DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAG-NCPECGTPL 53

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGT--TGAFPMSYVQ 129
           ++  +  DI+ +     + +  G       TG +P   V+
Sbjct: 458 EIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVR 497

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 93  LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
           L FK  D++ +    +  W++G V    G FP S+V++  N
Sbjct: 47  LGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVN 87

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPMSYVQI 130
            L+ +  D+V ++     +W+ G +       G FP S++ I
Sbjct: 33  QLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHI 73

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN-----WFYGEVN 140
            L+  K + + +L    +  W   +     G  P +Y+   N+     W++G V+
Sbjct: 59  TLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVS 113

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 35.9 bits (83), Expect = 6e-04
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTF-CKKCLEEIVSSHKELRCPECRVLVECKV 60
          L +   C +C+DR + +   +PC H   CK+C E +       +CP C  ++  K 
Sbjct: 22 LQEEKLCKICMDR-NIAIVFVPCGHLVTCKQCAEAVD------KCPMCYTVITFKQ 70

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 36.2 bits (84), Expect = 6e-04
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQIDNN----WFYGEVN 140
           DL+F+K D +++  +    W+          G  P +YV   ++       G   
Sbjct: 19  DLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSGGGTSGGGRHR 72

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 35.9 bits (83), Expect = 6e-04
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 5  TLNDLLECSVCLDRLDTSSKVLPCQHTF-CKKCLEEIVSSHKELRCPECRVLVECKV 60
           L + + C VC +  + +S   PC HT  C+ C  ++        CP CR  VE   
Sbjct: 14 KLKEAMLCMVCCEE-EINSTFCPCGHTVCCESCAAQLQ------SCPVCRSRVEHVQ 63

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 37.4 bits (85), Expect = 8e-04
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 18/66 (27%)

Query: 92  DLNFKKDDIVI-----LRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAF 146
           +L  K  D+V+        + D  W  G             V+  +   + ++    G F
Sbjct: 158 ELQLKAGDVVLVIPFQNPEEQDEGWLMG-------------VKESDWNQHKKLEKCRGVF 204

Query: 147 PMSYVQ 152
           P ++ +
Sbjct: 205 PENFTE 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.74
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.7
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.68
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.67
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.66
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.64
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.63
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.63
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.62
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.62
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.61
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.6
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.39
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.59
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.59
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.59
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.59
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.58
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.58
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.57
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.56
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.56
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.56
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.53
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.53
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.51
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.51
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.5
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.5
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.5
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.49
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.48
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.47
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.47
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.46
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.46
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.46
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.45
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.44
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.42
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.42
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.42
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.41
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.41
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.41
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.4
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.4
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.4
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.39
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.39
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.38
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.38
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.38
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.37
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.37
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.37
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.37
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.37
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.36
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.36
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.34
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.34
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.33
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.33
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.33
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.32
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.32
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.32
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.31
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.31
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.31
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.3
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.29
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.29
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.28
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.28
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.27
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.27
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.27
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.26
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.26
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.26
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.26
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.26
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.25
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.25
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.25
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.25
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.25
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.24
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.24
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.24
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.24
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.24
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.23
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.23
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.23
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.23
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.23
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.23
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.22
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.22
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.22
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.22
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.22
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.22
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.22
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.22
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.22
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.22
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.22
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.21
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.21
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.21
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.2
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.2
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.2
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.2
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.2
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.2
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.19
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.19
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.19
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.19
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.19
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.18
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.18
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.18
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.18
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.18
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.18
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.17
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.17
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.17
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.17
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.17
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.17
3u23_A	65	CD2-associated protein; structural genomics, struc	99.17
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.16
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.16
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.16
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.16
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.16
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.16
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.15
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.15
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.15
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.15
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.15
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.15
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.14
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.14
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.14
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.14
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.14
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.14
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.14
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.13
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.13
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.13
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.13
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.13
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.12
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.12
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.12
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.12
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.12
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.11
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.11
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.11
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.11
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.11
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.11
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.11
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.1
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.1
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.1
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.1
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.1
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.1
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.09
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.09
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.09
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.08
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.08
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.08
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.08
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.08
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.07
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.07
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.07
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.07
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.07
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.07
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.06
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.06
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.06
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.06
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.06
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.06
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.05
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.05
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.05
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.05
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.04
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.04
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.03
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.02
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.02
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.02
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.01
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.0
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.0
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.0
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.0
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.0
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.99
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.99
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	98.99
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	98.99
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	98.99
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	98.99
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	98.98
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	98.97
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	98.96
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	98.95
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	98.95
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	98.94
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.94
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	98.93
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	98.93
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.93
1wxb_A	68	Epidermal growth factor receptor pathway substrate	98.93
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	98.92
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.92
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	98.92
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.92
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	98.91
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.91
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	98.9
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	98.9
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	98.9
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	98.88
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	98.87
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.87
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	98.84
1awj_A	77	ITK; transferase, regulatory intramolecular comple	98.83
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	98.83
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	98.83
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	98.83
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	98.81
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	98.81
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	98.78
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	98.78
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.76
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	98.75
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	98.74
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	98.74
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.73
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	98.71
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	98.7
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	98.69
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	98.69
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.69
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	98.69
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	98.69
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	98.68
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	98.68
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	98.68
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.68
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	98.67
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	98.67
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	98.67
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	98.67
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	98.66
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	98.66
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.66
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	98.65
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.65
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	98.65
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	98.65
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	98.64
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	98.63
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.06
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	98.63
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	98.62
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	98.62
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	98.61
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	98.61
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	98.61
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	98.61
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	98.61
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	98.61
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	98.6
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	98.6
3u23_A	65	CD2-associated protein; structural genomics, struc	98.6
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	98.6
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	98.59
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	98.59
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	98.59
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	98.59
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	98.59
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	98.58
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	98.58
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	98.58
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.58
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	98.57
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	98.57
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	98.57
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	98.57
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	98.57
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	98.57
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	98.55
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	98.55
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	98.54
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	98.54
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.54
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	98.54
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	98.54
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	98.53
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	98.53
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	98.53
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	98.53
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	98.53
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	98.52
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	98.52
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	98.52
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	98.52
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	98.52
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	98.51
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	98.51
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	98.5
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	98.5
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	98.5
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	98.5
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	98.5
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	98.5
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	98.49
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	98.49
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	98.49
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	98.48
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.48
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	98.47
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	98.46
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	98.46
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	98.45
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	98.45
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	98.45
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	98.44
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	98.44
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.44
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	98.44
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	98.44
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	98.44
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	98.43
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	98.43
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	98.43
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	98.43
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	98.43
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	98.42
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	98.41
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	98.41
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	98.4
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	98.4
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	98.4
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	98.4
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	98.4
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	98.39
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	98.39
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	98.39
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	98.39
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	98.38
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	98.38
1i07_A	60	Epidermal growth factor receptor kinase substrate	98.37
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	98.37
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	98.36
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	98.35
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	98.34
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	98.34
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	98.33
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	98.33
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	98.33
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	98.32
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	98.32
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	98.31
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	98.3
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	98.27
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	98.25
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	98.25
1wxb_A	68	Epidermal growth factor receptor pathway substrate	98.24
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.23
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.23
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	98.23
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.22
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	98.22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.21
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.21
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	98.21
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	98.2
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	98.2
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	98.19
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	98.18
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	98.16
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	98.14
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	98.12
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	98.12
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	98.12
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.11
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.1
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	98.08
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	98.07
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	98.06
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	98.05
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	98.03
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	98.02
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.01
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	97.99
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	97.96
1awj_A	77	ITK; transferase, regulatory intramolecular comple	97.95
1u3o_A	82	Huntingtin-associated protein-interacting protein;	97.9
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	97.84
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	97.82
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	97.69
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	97.68
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	97.67
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	97.67
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	97.66
3nw0_A	238	Non-structural maintenance of chromosomes element	97.62
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	97.62
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	97.57
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	97.53
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	97.48
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	97.37
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	97.32
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	97.31
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	97.29
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	97.23
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	97.17
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.09
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.03
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	97.0
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	96.98
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	96.88
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	96.72
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	96.72
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	96.69
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	96.45
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	96.42
1u3o_A	82	Huntingtin-associated protein-interacting protein;	96.36
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	96.29
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	96.27
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	96.25
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	96.23
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	96.12
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	96.08
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	95.98
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	95.95
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	95.75
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	95.72
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	95.67
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	95.57
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	95.52
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	95.51
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	95.51
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	95.45
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	95.41
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	95.4
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	95.35
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	95.32
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	95.32
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	95.28
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	95.19
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	95.08
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	95.06
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	95.03
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	94.95
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	94.75
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	94.71
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	94.7
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	94.47
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	94.14
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	93.89
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	93.83
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	93.32
2kt8_A	76	Probable surface protein; SH3 family, structural g	93.14
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	93.04
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	92.95
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	92.85
2kt8_A	76	Probable surface protein; SH3 family, structural g	92.64
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	92.32
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	90.12
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	90.0
3h41_A	311	NLP/P60 family protein; NLPC/P60 family protein, s	89.72
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	89.19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	89.05
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	88.43
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	87.83
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	87.56
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	87.06
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	85.82

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.74  E-value=2.9e-18  Score=119.70  Aligned_cols=75  Identities=20%  Similarity=0.419  Sum_probs=67.5

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe--------------------------
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI--------------------------  130 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~--------------------------  130 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+++||.|+.+|+.|+||++||+.                          
T Consensus        12 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~~~~~p~~~~~~~~al~dy~   91 (193)
T 1ng2_A           12 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAIKAYT   91 (193)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSSCSSCSCCCCCCTTCEEEEESSCBC
T ss_pred             cEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCeeeEechheEEeeccccccchhhccccceeeeeccccC
Confidence            44666776     78999999999999999999999999999999999999863                          


Q ss_pred             ---------------------cCCeEEEEECCeEEeecCCCeEeccC
Q psy9673         131 ---------------------DNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       131 ---------------------~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                                           +++||.|+++|+.|+||++||+.+..
T Consensus        92 a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A           92 AVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             CCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             CCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECCC
Confidence                                 67999999999999999999999865

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.70  E-value=7.7e-18  Score=104.07  Aligned_cols=75  Identities=24%  Similarity=0.543  Sum_probs=63.4

Q ss_pred             cccCCCccccccccccccCCCEEcc-cCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccc
Q psy9673           3 EWTLNDLLECSVCLDRLDTSSKVLP-CQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPL   79 (162)
Q Consensus         3 ~~~~~~~l~C~iC~~~~~~~p~~~~-C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~   79 (162)
                      ...+.+++.|+||++++. +|++++ |||+||..||.+|+...+...||+||..+.. ...+.+|..+.++++.+...
T Consensus         7 ~~~~~~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~-~~~~~~n~~l~~~i~~~~~~   82 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS-PDALIANKFLRQAVNNFKNE   82 (92)
T ss_dssp             CCCCCTTTEETTTTEECS-SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC-TTSCEECHHHHHHHHHHHHH
T ss_pred             cccCCcCCCCCCCChhhc-CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC-ccccCcCHHHHHHHHHHHHH
Confidence            345778999999999999 889999 9999999999999976555689999998731 45788899999998887653

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.68  E-value=8.7e-17  Score=119.49  Aligned_cols=80  Identities=31%  Similarity=0.583  Sum_probs=70.5

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeEEe------------------------
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQI------------------------  130 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v~~------------------------  130 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+++||.|+ .+|+.|+||++||+.                        
T Consensus       134 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~g~~~~~~~~~~  213 (304)
T 2eyz_A          134 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPL  213 (304)
T ss_dssp             CCEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEECCCSTTSCCCCCCCSSCCSCCCSC
T ss_pred             ceeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccccCCCcccccccCCCcCCCCCCCC
Confidence            456778887     77899999999999999999999999 789999999998851                        


Q ss_pred             ---------------------------------------------------------cCCeEEEEECCeEEeecCCCeEe
Q psy9673         131 ---------------------------------------------------------DNNWFYGEVNGTTGAFPMSYVQF  153 (162)
Q Consensus       131 ---------------------------------------------------------~~~w~~g~~~g~~g~~p~~~~~~  153 (162)
                                                                               +++||.|+++|++|+||++||+.
T Consensus       214 ~~~~p~~~~~p~~~~~~p~~~~~~~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~  293 (304)
T 2eyz_A          214 GGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRL  293 (304)
T ss_dssp             SCCCSBTTBCSSSSCSSSCCSSCCCCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTTSCC
T ss_pred             CCCCcccccccccccccCCCCCCCEEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHHEEE
Confidence                                                                     77999999999999999999999


Q ss_pred             ccCCCCC
Q psy9673         154 VWYLPII  160 (162)
Q Consensus       154 ~~~~~~~  160 (162)
                      +....+.
T Consensus       294 ~~~~~~~  300 (304)
T 2eyz_A          294 LDQQNPE  300 (304)
T ss_dssp             CSSCCTT
T ss_pred             CCCCCcc
Confidence            9765543

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.67  E-value=2.3e-17  Score=98.82  Aligned_cols=71  Identities=13%  Similarity=0.341  Sum_probs=61.3

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhcccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~   78 (162)
                      ..+.+++.|+||++++. +|++++|||+||..|+.+|+.. +...||+||..+.  ...+.+|..+.++++.+..
T Consensus         3 ~~~~~~~~C~IC~~~~~-~Pv~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~--~~~l~~n~~l~~~i~~~~~   73 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMK-DPVIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLL--HAGLTPNYVLKSLIALWCE   73 (78)
T ss_dssp             CCCSSSSSCTTTSCCCS-SEEEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCS--SCCCEECTTTHHHHHHHHH
T ss_pred             cCCcccCCCCCcccccc-CCEEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCC--hhhCccCHHHHHHHHHHHH
Confidence            45678999999999999 8899999999999999999975 2358999999987  5578889999988887754

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.66  E-value=5.5e-17  Score=120.80  Aligned_cols=76  Identities=26%  Similarity=0.517  Sum_probs=44.1

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe-cCCCCceeeeeEE-------------------------
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYVQ-------------------------  129 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~-~~~~G~~P~~~v~-------------------------  129 (162)
                      ...++++|+     ..+|+|.+||+|.|+++.+++||.|+. +|+.|+||++||+                         
T Consensus       147 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~~~ss~~ss~s~  226 (308)
T 3qwy_A          147 IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGG  226 (308)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEEC-----------------------
T ss_pred             ceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEecccccccccccccCccccccccCCCCCcccc
Confidence            446777877     779999999999999999999999995 9999999999999                         


Q ss_pred             --------------------e---------------------------------cCCeEEEEECCeEEeecCCCeEeccC
Q psy9673         130 --------------------I---------------------------------DNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       130 --------------------~---------------------------------~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                                          .                                 +++||.|+++|+.|+||++|||.+..
T Consensus       227 p~p~s~ps~~sp~p~~~~~~~~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~~~~  306 (308)
T 3qwy_A          227 AERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAV  306 (308)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccCcccccccccccccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEECCeeEEechHHeEEecC
Confidence                                1                                 67999999999999999999999865

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.64  E-value=1.2e-16  Score=97.10  Aligned_cols=70  Identities=11%  Similarity=0.054  Sum_probs=61.7

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhcccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~   78 (162)
                      ..+.+++.|+||++++. +|++++|||+||..||.+|+...  ..||+|+..+.  ...+.+|..++++++.+..
T Consensus         9 ~~~p~~~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~--~~cP~~~~~l~--~~~l~pn~~L~~~i~~~~~   78 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMT-DPVRLPSGTVMDRSIILRHLLNS--PTDPFNRQMLT--ESMLEPVPELKEQIQAWMR   78 (85)
T ss_dssp             TTCCTTTBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCC--GGGCEECHHHHHHHHHHHH
T ss_pred             hcCchheECcccCchhc-CCeECCCCCEECHHHHHHHHhcC--CCCCCCcCCCC--hHhcchHHHHHHHHHHHHH
Confidence            45668899999999999 99999999999999999999864  48999999997  5688999999999887754

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.63  E-value=1.8e-17  Score=99.50  Aligned_cols=68  Identities=25%  Similarity=0.610  Sum_probs=56.3

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcC-----CCcccccccccccccccCCCcchhhhhhhh
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH-----KELRCPECRVLVECKVDELPPNVLLMRILE   74 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~-----~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e   74 (162)
                      +.+++++.|+||++.+. +|++++|||+||..|+.+|+...     ....||.||..+.  ...+.+|..+.++++
T Consensus         7 ~~~~~~~~C~IC~~~~~-~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~--~~~l~~n~~l~~lve   79 (79)
T 2egp_A            7 GNVQEEVTCPICLELLT-EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS--FEHLQANQHLANIVE   79 (79)
T ss_dssp             CCCCCCCEETTTTEECS-SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC--SSGGGTCSSSCCCCC
T ss_pred             hhcccCCCCcCCCcccC-CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC--HhhCCcCHHHHHhhC
Confidence            45678999999999999 88899999999999999988752     2468999999987  456777877766653

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.63  E-value=1.7e-16  Score=96.44  Aligned_cols=67  Identities=28%  Similarity=0.673  Sum_probs=55.9

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcC----CCcccccccccccccccCCCcchhhhhhh
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH----KELRCPECRVLVECKVDELPPNVLLMRIL   73 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~----~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~   73 (162)
                      ..+++++.|+||++.+. .|++++|||+||..|+..|+...    +...||.||..+.  ...+.+|..+.+++
T Consensus        14 ~~~~~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~--~~~~~~n~~l~~~v   84 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLK-EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP--FGNLKPNLHVANIV   84 (85)
T ss_dssp             CCCCTTTSCTTTCSCCS-SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC--TTCCEECSCCCSSC
T ss_pred             HhCccCCCCcCCChhhC-cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC--HHhCCcCHHHHHhh
Confidence            34678899999999999 88999999999999999999863    2568999999987  45777777776665

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=2.7e-16  Score=95.51  Aligned_cols=68  Identities=29%  Similarity=0.706  Sum_probs=56.6

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhc----CCCcccccccccccccccCCCcchhhhhhhh
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS----HKELRCPECRVLVECKVDELPPNVLLMRILE   74 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~----~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e   74 (162)
                      ..+++++.|+||++.+. +|++++|||+||..|+..|+..    .+...||.||..+.  ...+.+|..+.++++
T Consensus        14 ~~~~~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~--~~~~~~n~~l~~~ve   85 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLT-QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ--PENIRPNRHVANIVE   85 (85)
T ss_dssp             CCCCCCCCCTTTCSCCS-SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC--SSSCCCSCCCCCCCC
T ss_pred             HHccCCCCCCCCCcccC-CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC--HHhcCccHHHHHhhC
Confidence            34678899999999999 7889999999999999999875    23468999999987  567788887776653

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.62  E-value=1.1e-16  Score=104.20  Aligned_cols=69  Identities=28%  Similarity=0.619  Sum_probs=58.8

Q ss_pred             CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhcccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~   78 (162)
                      ++++.|+||++++. +|++++|||+||..|+.+|+.. +...||+||..+.. ...+.+|..+.++++.+..
T Consensus        50 ~~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~-~~~~~~n~~l~~~i~~~~p  118 (124)
T 3fl2_A           50 EETFQCICCQELVF-RPITTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLGR-SYAMQVNQPLQTVLNQLFP  118 (124)
T ss_dssp             HHHTBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCT-TCCCCCCHHHHHHHHHHST
T ss_pred             ccCCCCCcCChHHc-CcEEeeCCCcccHHHHHHHHhH-CcCCCCCCCccCCC-CCCCCCCHHHHHHHHHHcc
Confidence            56788999999999 8899999999999999999984 33589999999872 1578899999998887765

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.61  E-value=2.8e-16  Score=98.24  Aligned_cols=71  Identities=11%  Similarity=0.018  Sum_probs=61.9

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPL   79 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~   79 (162)
                      ..+.+++.||||++++. +|++++|||+||..||.+|+...  ..||+|+.++.  ...+.+|..+.++++.+...
T Consensus        24 ~~~p~~~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~--~~cP~~~~~l~--~~~L~pn~~Lk~~I~~~~~~   94 (100)
T 2kre_A           24 SDAPDEFRDPLMDTLMT-DPVRLPSGTIMDRSIILRHLLNS--PTDPFNRQTLT--ESMLEPVPELKEQIQAWMRE   94 (100)
T ss_dssp             SSCSTTTBCTTTCSBCS-SEEEETTTEEEEHHHHHHHTTSC--SBCSSSCCBCC--TTSSEECHHHHHHHHHHHHT
T ss_pred             ccCcHhhCCcCccCccc-CCeECCCCCEEchHHHHHHHHcC--CCCCCCCCCCC--hhhceECHHHHHHHHHHHHH
Confidence            34567899999999999 99999999999999999999854  48999999998  56889999999998877543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.60  E-value=7.8e-16  Score=91.20  Aligned_cols=54  Identities=26%  Similarity=0.692  Sum_probs=47.1

Q ss_pred             cccCCCccccccccccccCCCEEcc-cCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           3 EWTLNDLLECSVCLDRLDTSSKVLP-CQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         3 ~~~~~~~l~C~iC~~~~~~~p~~~~-C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ...+.+++.|+||++.+. +|++++ |||+||..||.+|+...+...||+||+.+.
T Consensus         9 ~~~~~~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A            9 DDPIPDELLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CCCSCGGGSCSSSCCCCT-TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             cccCCCCCCCcCCChHHh-CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            456678899999999999 889999 999999999999998655568999999754

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.39  E-value=6.7e-17  Score=120.05  Aligned_cols=81  Identities=30%  Similarity=0.560  Sum_probs=69.8

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeEEe------------------------
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQI------------------------  130 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v~~------------------------  130 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+++||.|+ .+|+.|+||++||+.                        
T Consensus       125 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~~~~~~~~s~~~~~~~~p~~s  204 (303)
T 2lqn_A          125 LEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPA  204 (303)
Confidence            345677777     77999999999999999999999999 689999999988741                        


Q ss_pred             ------------------------------------------------------------------cCCeEEEEECCeEE
Q psy9673         131 ------------------------------------------------------------------DNNWFYGEVNGTTG  144 (162)
Q Consensus       131 ------------------------------------------------------------------~~~w~~g~~~g~~g  144 (162)
                                                                                        +++||.|+++|+.|
T Consensus       205 ~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G  284 (303)
T 2lqn_A          205 HAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKG  284 (303)
Confidence                                                                              77999999999999


Q ss_pred             eecCCCeEeccCCCCCC
Q psy9673         145 AFPMSYVQFVWYLPIIN  161 (162)
Q Consensus       145 ~~p~~~~~~~~~~~~~~  161 (162)
                      +||++||+.+.+..+.|
T Consensus       285 ~fP~~yv~~~~~~~~~~  301 (303)
T 2lqn_A          285 LFPFTHVKIFDPQNPDE  301 (303)
Confidence            99999999997655443

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.59  E-value=4.9e-16  Score=96.77  Aligned_cols=71  Identities=17%  Similarity=0.135  Sum_probs=61.9

Q ss_pred             ccCCCccccccccccccCCCEEcccC-CccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQ-HTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPL   79 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~-H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~   79 (162)
                      ..+.+++.|+||++++. +|++++|| |+||..||.+|+...  ..||+|+.++.  ...+.+|..++++++.+...
T Consensus        17 ~~~p~~~~CpI~~~~m~-dPV~~~cG~htf~r~cI~~~l~~~--~~cP~~~~~l~--~~~L~pn~~Lk~~I~~~~~~   88 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMC-DPVVLPSSRVTVDRSTIARHLLSD--QTDPFNRSPLT--MDQIRPNTELKEKIQRWLAE   88 (98)
T ss_dssp             CSCCTTTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHTTTS--CBCTTTCSBCC--TTTSEECHHHHHHHHHHHHH
T ss_pred             hcCcHhcCCcCcccccc-CCeECCCCCeEECHHHHHHHHHhC--CCCCCCCCCCC--hhhceEcHHHHHHHHHHHHH
Confidence            34567899999999999 99999999 999999999999864  48999999998  56888999999998887553

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.59  E-value=9e-17  Score=100.71  Aligned_cols=71  Identities=20%  Similarity=0.613  Sum_probs=58.9

Q ss_pred             cCCCccccccccccccCCCEE-cccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccc
Q psy9673           5 TLNDLLECSVCLDRLDTSSKV-LPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPL   79 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~-~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~   79 (162)
                      .+++++.|+||++.+. .|+. ++|||+||..||.+|+...+ ..||+||..+.  ...+..+..+..+.+.+...
T Consensus        18 ~l~~~~~C~IC~~~~~-~p~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~~~~--~~~l~~~~~~~~i~~~~~~l   89 (100)
T 3lrq_A           18 SIAEVFRCFICMEKLR-DARLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRAPLQ--LRELVNCRWAEEVTQQLDTL   89 (100)
T ss_dssp             HHHHHTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHHHTC-SBCTTTCCBCC--GGGCEECTTHHHHHHHHHHH
T ss_pred             cCCCCCCCccCCcccc-CccccCCCCChhhHHHHHHHHHHCc-CCCCCCCCcCC--HHHhHhhHHHHHHHHHHHHH
Confidence            3567899999999999 8888 99999999999999998653 48999999987  56777787777777666543

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=9.6e-16  Score=93.72  Aligned_cols=69  Identities=30%  Similarity=0.801  Sum_probs=53.8

Q ss_pred             cccCCCccccccccccccCC----CEEcccCCccchhcHHHHHhcC-CCccccccccccc-ccccCCCcchhhhhh
Q psy9673           3 EWTLNDLLECSVCLDRLDTS----SKVLPCQHTFCKKCLEEIVSSH-KELRCPECRVLVE-CKVDELPPNVLLMRI   72 (162)
Q Consensus         3 ~~~~~~~l~C~iC~~~~~~~----p~~~~C~H~fC~~Cl~~~~~~~-~~~~Cp~Cr~~~~-~~~~~l~~n~~l~~i   72 (162)
                      ...+++.+.|+||++.+. .    |++++|||+||..|+.+|+... ....||+||..+. .....++.|+.+.++
T Consensus         9 ~~~~~~~~~C~IC~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~~~~~~   83 (88)
T 2ct2_A            9 LDALREVLECPICMESFT-EEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNLTVLKS   83 (88)
T ss_dssp             CCCCCSCCBCTTTCCBCC-TTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECTTTTSS
T ss_pred             hhhccCCCCCccCCcccc-ccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHHHHHcc
Confidence            456788899999999998 5    8999999999999999999864 3468999999875 223455555554443

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.59  E-value=1.1e-16  Score=106.05  Aligned_cols=68  Identities=26%  Similarity=0.637  Sum_probs=52.5

Q ss_pred             CCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhcc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGL   76 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~   76 (162)
                      +++++.|+||++.+. +|++++|||+||..|+..|+....  .||+||.++......+..+..+..++..+
T Consensus        50 ~~~~~~C~iC~~~~~-~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~~~~~~~~~~i~~~~~~l  117 (138)
T 4ayc_A           50 LENELQCIICSEYFI-EAVTLNCAHSFCSYCINEWMKRKI--ECPICRKDIKSKTYSLVLDNCINKMVNNL  117 (138)
T ss_dssp             HHHHSBCTTTCSBCS-SEEEETTSCEEEHHHHHHHTTTCS--BCTTTCCBCCCEEECHHHHHHHHHHHTTS
T ss_pred             ccccCCCcccCcccC-CceECCCCCCccHHHHHHHHHcCC--cCCCCCCcCCCCCCccchhHHHHHHHHHh
Confidence            346788999999999 889999999999999999998554  89999999863333444455555555444

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.7e-16  Score=99.24  Aligned_cols=70  Identities=27%  Similarity=0.716  Sum_probs=59.6

Q ss_pred             CCCccccccccccccCCCEEc-ccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccce
Q psy9673           6 LNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLV   80 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~~   80 (162)
                      +++++.|+||++.+. +|+++ +|||+||..|+.+|+..+  ..||+||..+.  ...+.+|..+.++++.+....
T Consensus        19 ~~~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~--~~~l~~n~~l~~~i~~~~~~~   89 (99)
T 2y43_A           19 IDDLLRCGICFEYFN-IAMIIPQCSHNYCSLCIRKFLSYK--TQCPTCCVTVT--EPDLKNNRILDELVKSLNFAR   89 (99)
T ss_dssp             HHHHTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHTTC--CBCTTTCCBCC--GGGCEECHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCChhhC-CcCEECCCCCHhhHHHHHHHHHCC--CCCCCCCCcCC--hhhCCcCHHHHHHHHHHHHHH
Confidence            346789999999999 77877 899999999999999854  48999999987  467888999999988876543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.7e-15  Score=91.32  Aligned_cols=65  Identities=25%  Similarity=0.467  Sum_probs=51.8

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhh
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILE   74 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e   74 (162)
                      ...++.+.|+||++.+. .|++++|||+||..|+.+|+....  .||+||..+.   ..+..|..+...+.
T Consensus        10 ~~~~~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~--~CP~Cr~~~~---~~~~~~~~l~~~~~   74 (81)
T 2csy_A           10 EEEEIPFRCFICRQAFQ-NPVVTKCRHYFCESCALEHFRATP--RCYICDQPTG---GIFNPAKELMAKLQ   74 (81)
T ss_dssp             SCCCCCSBCSSSCSBCC-SEEECTTSCEEEHHHHHHHHHHCS--BCSSSCCBCC---SCCEECHHHHHHHS
T ss_pred             ccCCCCCCCcCCCchhc-CeeEccCCCHhHHHHHHHHHHCCC--cCCCcCcccc---ccCCcHHHHHHHHH
Confidence            34567889999999998 889999999999999999998544  8999999886   45556654444433

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.57  E-value=5e-16  Score=104.08  Aligned_cols=70  Identities=27%  Similarity=0.620  Sum_probs=59.5

Q ss_pred             CCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhcccc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~   78 (162)
                      +.+++.|+||++.+. +|++++|||+||..||.+|+.. +...||+||..+... ..++.|..+.++++.+..
T Consensus        75 l~~~~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~-~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           75 LEQSFMCVCCQELVY-QPVTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQN-YIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHTBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTT-CCCCBCHHHHHHHHHHST
T ss_pred             CccCCEeecCChhhc-CCEEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCC-CCCCCCHHHHHHHHHHhh
Confidence            346789999999999 8899999999999999999985 335899999998722 278899999999987765

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=3.1e-15  Score=88.15  Aligned_cols=52  Identities=33%  Similarity=0.766  Sum_probs=45.4

Q ss_pred             cccCCCccccccccccccCCCEEc-ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           3 EWTLNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         3 ~~~~~~~l~C~iC~~~~~~~p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ...+++++.|+||++.+. +|+++ +|||+||..|+.+|+....  .||+||..+.
T Consensus         9 ~~~~~~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~--~CP~Cr~~~~   61 (72)
T 2djb_A            9 LSELTPYILCSICKGYLI-DATTITECLHTFCKSCIVRHFYYSN--RCPKCNIVVH   61 (72)
T ss_dssp             CCCCCGGGSCTTTSSCCS-SCEECSSSCCEECHHHHHHHHHHCS--SCTTTCCCCC
T ss_pred             HhhcCCCCCCCCCChHHH-CcCEECCCCCHHHHHHHHHHHHcCC--cCCCcCcccC
Confidence            356678899999999999 77776 9999999999999998644  8999999886

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.56  E-value=4.5e-15  Score=105.24  Aligned_cols=46  Identities=30%  Similarity=0.546  Sum_probs=35.9

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEec-CCCeEEEEecCCCCceeeeeE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKI-DNNWFYGEVNGTTGAFPMSYV  128 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~-~~~w~~g~~~~~~G~~P~~~v  128 (162)
                      .++++|+     ..+|+|.+||+|.++.+. +.+||.|+.+|+.|+||.+||
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv   53 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI   53 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGE
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccCCccceECCccc
Confidence            3566666     789999999999998876 568999999999999999876

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.56  E-value=6.7e-16  Score=98.04  Aligned_cols=71  Identities=28%  Similarity=0.586  Sum_probs=58.5

Q ss_pred             cCCCccccccccccccCCCEEc-ccCCccchhcHHHHHhcCCCccccccccccccc--ccCCCcchhhhhhhhcccc
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECRVLVECK--VDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~--~~~l~~n~~l~~i~e~~~~   78 (162)
                      .+++++.|+||++.+. +|+++ +|||+||..|+..|+...  ..||.||..+...  ...+..|..+.++++.+..
T Consensus        11 ~~~~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFI-DATTIIECLHSFCKTCIVRYLETS--KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             HHGGGTBCTTTSSBCS-SEEEETTTCCEEEHHHHHHHHTSC--SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred             ccCCcCCCccCChHHh-CcCEeCCCCChhhHHHHHHHHHhC--CcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence            4567899999999999 77887 999999999999999865  4899999988621  2256778888888887765

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.53  E-value=8.7e-16  Score=98.88  Aligned_cols=68  Identities=29%  Similarity=0.614  Sum_probs=58.9

Q ss_pred             cCCCccccccccccccCCCEEc-ccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccc
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPL   79 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~   79 (162)
                      .+++++.|+||++++. +|+++ +|||+||..|+..|+.    ..||+||..+.  ...+.+|..+.++++.+...
T Consensus        18 ~l~~~~~C~IC~~~~~-~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~--~~~~~~n~~l~~l~~~~~~~   86 (117)
T 1jm7_B           18 RLEKLLRCSRCTNILR-EPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAW--IQDLKINRQLDSMIQLCSKL   86 (117)
T ss_dssp             HHHHTTSCSSSCSCCS-SCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCS--CSSCCCCHHHHHHHHHHHHH
T ss_pred             hchhCCCCCCCChHhh-CccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCc--cccccccHHHHHHHHHHHHH
Confidence            3457899999999999 88888 9999999999999887    37999999986  57889999999998877653

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=2.3e-15  Score=93.20  Aligned_cols=73  Identities=18%  Similarity=0.368  Sum_probs=61.3

Q ss_pred             cCCCccccccccccccCCCEEcc-cCCccchhcHHHHHhcC----CCccccc--cccc-ccccccCCCcchhhhhhhhcc
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVLP-CQHTFCKKCLEEIVSSH----KELRCPE--CRVL-VECKVDELPPNVLLMRILEGL   76 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~~-C~H~fC~~Cl~~~~~~~----~~~~Cp~--Cr~~-~~~~~~~l~~n~~l~~i~e~~   76 (162)
                      ...+++.||||+++|. +|++++ |||+||..||.+|+...    +...||+  |+.. +.  ...+.+|..+..+++.+
T Consensus         3 ~~~~~~~CPI~~~~~~-dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~--~~~L~pn~~L~~~I~~~   79 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMK-KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR--KSDLIQDEALRRAIENH   79 (94)
T ss_dssp             SCSSCCBCTTTCSBCS-SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC--GGGEEECHHHHHHHHHH
T ss_pred             CCCcEeECcCcCchhc-CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC--HhhCcCCHHHHHHHHHH
Confidence            4567899999999999 899996 99999999999999753    3468999  8876 65  56888999999999888


Q ss_pred             ccce
Q psy9673          77 FPLV   80 (162)
Q Consensus        77 ~~~~   80 (162)
                      ....
T Consensus        80 ~~~~   83 (94)
T 2yu4_A           80 NKKR   83 (94)
T ss_dssp             HTTC
T ss_pred             HHHh
Confidence            6643

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.51  E-value=1.8e-15  Score=96.54  Aligned_cols=69  Identities=25%  Similarity=0.664  Sum_probs=55.9

Q ss_pred             CCccccccccccccCCCEEcccCCccchhcHHHHHhcC-CCcccccccccccccccCCCcchhhhhhhhcccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH-KELRCPECRVLVECKVDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~-~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~   78 (162)
                      .+.+.|+||++.+. .|++++|||+||..|+.+|+... +...||+||..+.  ...+..|..+.++++.+..
T Consensus        19 ~~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~--~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           19 QKILECPICLELIK-EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT--KRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHTSCSSSCCCCS-SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC--TTTCBCCCSSSHHHHHHHH
T ss_pred             cCCCCCcccChhhc-CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC--HhhcCccHHHHHHHHHHHH
Confidence            45788999999998 88889999999999999999853 3358999999987  4567777776666666553

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=9.5e-15  Score=84.55  Aligned_cols=52  Identities=31%  Similarity=0.669  Sum_probs=44.8

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..+.+.+.|+||++.+. .|++++|||+||..|+.+|+.. ....||+||+.+.
T Consensus        10 ~~~~~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~   61 (66)
T 2ecy_A           10 KTVEDKYKCEKCHLVLC-SPKQTECGHRFCESCMAALLSS-SSPKCTACQESIV   61 (66)
T ss_dssp             CSCCCCEECTTTCCEES-SCCCCSSSCCCCHHHHHHHHTT-SSCCCTTTCCCCC
T ss_pred             hcCCcCCCCCCCChHhc-CeeECCCCCHHHHHHHHHHHHh-CcCCCCCCCcCCC
Confidence            34678899999999999 7888999999999999999963 3358999999876

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.2e-14  Score=85.81  Aligned_cols=53  Identities=32%  Similarity=0.782  Sum_probs=45.6

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhc-CCCccccccccccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS-HKELRCPECRVLVE   57 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~-~~~~~Cp~Cr~~~~   57 (162)
                      ..+++++.|+||++.+. +|++++|||+||..|+.+|+.. .....||+||..+.
T Consensus        15 ~~~~~~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQ-KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR   68 (73)
T ss_dssp             CCCCCCCBCTTTCSBCS-SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred             HhCccCCEeccCCcccC-CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence            34678899999999999 8899999999999999999863 23458999999876

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.50  E-value=7.3e-15  Score=86.21  Aligned_cols=50  Identities=26%  Similarity=0.786  Sum_probs=44.1

Q ss_pred             cCCCccccccccccccCCC-------EEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           5 TLNDLLECSVCLDRLDTSS-------KVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p-------~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ...+++.|+||++.+. .+       +.++|||+||..|+.+|+..+.  .||+||..+.
T Consensus         6 ~~~~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~   62 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKIN   62 (71)
T ss_dssp             CCTTCCBCTTTCCBHH-HHHTTTCCEEECTTSCEEEHHHHHHHHHHCS--BCTTTCCBCC
T ss_pred             CCCCCCCCcccChhhh-ccccccCCeEeCCCCChHhHHHHHHHHHcCC--CCCCCCCccC
Confidence            4467889999999997 55       8899999999999999998654  8999999886

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.50  E-value=7.8e-15  Score=94.53  Aligned_cols=70  Identities=27%  Similarity=0.569  Sum_probs=56.9

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLF   77 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~   77 (162)
                      +.+++++.|+||++.+. .|++++|||+||..|+.+|+...+ ..||+||..+.  ...+.++..+.+++..+.
T Consensus        13 ~~~~~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~--~~~~~~~~~l~~~i~~l~   82 (118)
T 3hct_A           13 PPLESKYECPICLMALR-EAVQTPCGHRFCKACIIKSIRDAG-HKCPVDNEILL--ENQLFPDNFAKREILSLM   82 (118)
T ss_dssp             SCCCGGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBCC--GGGCEECHHHHHHHHTSE
T ss_pred             cCCCCCCCCCcCChhhc-CeEECCcCChhhHHHHHHHHhhCC-CCCCCCCCCcC--HHhcccCHHHHHHHccce
Confidence            45678899999999999 889999999999999999997543 38999999987  445666777766666554

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.5e-14  Score=82.00  Aligned_cols=48  Identities=33%  Similarity=0.832  Sum_probs=41.3

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhc-CCCcccccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS-HKELRCPEC   52 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~-~~~~~Cp~C   52 (162)
                      +.+++++.|+||++.+. +|++++|||+||..||.+|+.. .....||+|
T Consensus        15 ~~~~~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           15 NKLQEEVICPICLDILQ-KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCBCTTTCSBCS-SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HhCccCCCCCcCCchhC-CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            34678899999999999 8899999999999999999984 234589987

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.48  E-value=4.5e-15  Score=95.24  Aligned_cols=72  Identities=32%  Similarity=0.647  Sum_probs=57.6

Q ss_pred             cCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccc-----cccCCCcchhhhhhhhcccc
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVEC-----KVDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~-----~~~~l~~n~~l~~i~e~~~~   78 (162)
                      .+.+++.|+||++++. .|++++|||+||..|+.+|+.. +...||.||..+..     ....+..|..+..+++.+..
T Consensus        11 ~~~~~~~C~iC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p   87 (115)
T 3l11_A           11 PSLSECQCGICMEILV-EPVTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP   87 (115)
T ss_dssp             CCHHHHBCTTTCSBCS-SCEECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred             CCCCCCCCccCCcccC-ceeEcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence            4456889999999999 8999999999999999998864 23589999998752     13566677788777776654

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.47  E-value=2e-14  Score=98.27  Aligned_cols=71  Identities=18%  Similarity=0.303  Sum_probs=61.7

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhcccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~   78 (162)
                      ..+.+.+.||||++++. +|++++|||+||..||.+|+...+. .||+|+.++.  ...+.+|..+..+++.+..
T Consensus       101 ~~ip~~f~CPI~~elm~-DPV~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~--~~~L~pN~~Lk~~Ie~~~~  171 (179)
T 2f42_A          101 REIPDYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLT--QDQLIPNLAMKEVIDAFIQ  171 (179)
T ss_dssp             CCCCGGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCC--GGGCEECHHHHHHHHHHHH
T ss_pred             cCCcHhhcccCccccCC-CCeECCCCCEECHHHHHHHHHhCCC-CCCCCcCCCC--hhhCcchHHHHHHHHHHHH
Confidence            34567899999999999 9999999999999999999986543 7999999997  5689999999999887654

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.47  E-value=8.3e-15  Score=99.74  Aligned_cols=73  Identities=27%  Similarity=0.650  Sum_probs=58.0

Q ss_pred             cCCCccccccccccccCCCEEc-ccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccce
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLV   80 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~~   80 (162)
                      .+.+++.|+||++.+. .|+++ +|||+||..|+..|+... ...||+||..+.. ...+.+|..+.++++.+....
T Consensus        50 ~~~~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~-~~~l~~~~~l~~~i~~~~~~~  123 (165)
T 2ckl_B           50 SLHSELMCPICLDMLK-NTMTTKECLHRFCADCIITALRSG-NKECPTCRKKLVS-KRSLRPDPNFDALISKIYPSR  123 (165)
T ss_dssp             CCHHHHBCTTTSSBCS-SEEEETTTCCEEEHHHHHHHHHTT-CCBCTTTCCBCCS-GGGEEECHHHHHHHHHHC---
T ss_pred             hCCCCCCCcccChHhh-CcCEeCCCCChhHHHHHHHHHHhC-cCCCCCCCCcCCC-cccCCcCHHHHHHHHHHHcch
Confidence            3456779999999999 67776 999999999999999852 3589999998842 346788999999998887643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.46  E-value=2.8e-14  Score=104.57  Aligned_cols=70  Identities=17%  Similarity=0.291  Sum_probs=60.8

Q ss_pred             CCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPL   79 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~   79 (162)
                      ..+++.|+||++++. +|++++|||+||..||.+|+..++ ..||+|+.++.  ...+.+|..+..+++.+...
T Consensus       205 ~~~~~~c~i~~~~~~-dPv~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~--~~~l~~n~~l~~~i~~~~~~  274 (281)
T 2c2l_A          205 IPDYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLT--QEQLIPNLAMKEVIDAFISE  274 (281)
T ss_dssp             CCSTTBCTTTCSBCS-SEEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCC--GGGCEECHHHHHHHHHHHTT
T ss_pred             CCcccCCcCcCCHhc-CCeECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCc--hhcCcccHHHHHHHHHHHHH
Confidence            346889999999999 999999999999999999998644 24999999997  56889999999999877653

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.46  E-value=6.6e-15  Score=110.97  Aligned_cols=50  Identities=38%  Similarity=0.808  Sum_probs=45.1

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ...++++|+     ..+|+|.+||+|.++.+.+++||.|+.+|+.|+||++||+.
T Consensus       174 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~  228 (341)
T 2dyb_A          174 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI  228 (341)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             CcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEE
Confidence            356788887     78999999999999999999999999999999999999874

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.6e-14  Score=84.76  Aligned_cols=50  Identities=30%  Similarity=0.661  Sum_probs=43.9

Q ss_pred             cCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ...+++.|+||++.+. .++.++|||.||..|+.+|+...  ..||+||..+.
T Consensus        11 ~~~~~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~   60 (71)
T 2d8t_A           11 PSLTVPECAICLQTCV-HPVSLPCKHVFCYLCVKGASWLG--KRCALCRQEIP   60 (71)
T ss_dssp             SSSSCCBCSSSSSBCS-SEEEETTTEEEEHHHHHHCTTCS--SBCSSSCCBCC
T ss_pred             cCCCCCCCccCCcccC-CCEEccCCCHHHHHHHHHHHHCC--CcCcCcCchhC
Confidence            3456789999999998 88999999999999999998754  48999999875

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.45  E-value=8.3e-14  Score=83.16  Aligned_cols=52  Identities=33%  Similarity=0.730  Sum_probs=43.4

Q ss_pred             ccCCCccccccccccccC--CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           4 WTLNDLLECSVCLDRLDT--SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~--~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ....+.+.|+||++.|..  ..++++|+|.||..||.+|+..+.  .||+||+.+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~--~CP~Cr~~~~   63 (78)
T 2ect_A           10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD--SCPVCRKSLT   63 (78)
T ss_dssp             TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTC--SCTTTCCCCC
T ss_pred             ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCC--cCcCcCCccC
Confidence            445678899999999973  236679999999999999998654  8999999886

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=3.6e-14  Score=82.66  Aligned_cols=51  Identities=25%  Similarity=0.767  Sum_probs=43.9

Q ss_pred             ccCCCccccccccccccCCC-------EEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSS-------KVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p-------~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..+.+.+.|+||++.+. .+       ++++|||.||..|+.+|+....  .||+||..+.
T Consensus        10 ~~~~~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~   67 (69)
T 2ea6_A           10 LRPSGTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKIN   67 (69)
T ss_dssp             CCTTCCCCCTTTCCCHH-HHTTTTCCEEECSSSCEEEHHHHHHHHHHCS--SCTTTCCCCC
T ss_pred             cCCCCCCCCcccCcccc-ccccccCCeEeCCCCChhcHHHHHHHHHcCC--CCCCCCCccC
Confidence            44567889999999997 44       8899999999999999998654  8999999875

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=7.1e-14  Score=78.66  Aligned_cols=48  Identities=33%  Similarity=0.842  Sum_probs=40.7

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhc-CCCcccccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS-HKELRCPEC   52 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~-~~~~~Cp~C   52 (162)
                      ..+++++.|+||++.+. +|++++|||+||..|+.+|+.. .....||+|
T Consensus        10 ~~~~~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           10 ENLQVEASCSVCLEYLK-EPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCSCCCCBCSSSCCBCS-SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hccccCCCCccCCcccC-ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            45667889999999999 7889999999999999999764 344689987

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.42  E-value=7.5e-14  Score=81.16  Aligned_cols=49  Identities=35%  Similarity=0.832  Sum_probs=42.4

Q ss_pred             CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ++...|+||++.+.++++.++|||.||..|+.+|+..+.  .||+||..+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~--~CP~Cr~~~~   51 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP--TCPLCKVPVE   51 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC--STTTTCCCCC
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcC--cCcCCChhhH
Confidence            456789999999984458999999999999999998654  8999999875

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.42  E-value=5.9e-14  Score=80.90  Aligned_cols=48  Identities=27%  Similarity=0.659  Sum_probs=40.3

Q ss_pred             Cccccccccc-cccCCC----EEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           8 DLLECSVCLD-RLDTSS----KVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~-~~~~~p----~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +++.|+||++ ++. .|    ++++|||+||..|+.+|+... ...||+||+.+.
T Consensus         2 ~~~~C~IC~~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~   54 (65)
T 1g25_A            2 DDQGCPRCKTTKYR-NPSLKLMVNVCGHTLCESCVDLLFVRG-AGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHH-CSSCCEEECTTCCCEEHHHHHHHHHTT-SSSCTTTCCCCS
T ss_pred             CCCcCCcCCCCccC-CCccCeecCCCCCHhHHHHHHHHHHcC-CCcCCCCCCccc
Confidence            4678999999 887 54    578999999999999997643 358999999886

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.41  E-value=9.1e-14  Score=77.41  Aligned_cols=50  Identities=40%  Similarity=0.957  Sum_probs=42.0

Q ss_pred             CCCccccccccccccC--CCEEcc-cCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDT--SSKVLP-CQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~--~p~~~~-C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ++++..|+||++.+..  .+..++ |||.||..|+.+|+..+.  .||+||+.+.
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~--~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS--TCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC--SCSSSCCCSC
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCC--cCcCCCCEeE
Confidence            5678899999999973  267787 999999999999998654  8999998653

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.41  E-value=3.2e-14  Score=81.66  Aligned_cols=47  Identities=28%  Similarity=0.874  Sum_probs=41.3

Q ss_pred             CccccccccccccCCC-------EEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTSS-------KVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p-------~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +++.|+||++.+. .+       +.++|||.||..|+.+|+....  .||+||..+.
T Consensus         2 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~   55 (64)
T 2xeu_A            2 AMVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKIN   55 (64)
T ss_dssp             CCCBCTTTCCBHH-HHHHTTCCEEEETTSCEEEHHHHHHHHHHCS--BCTTTCCBCT
T ss_pred             CCCCCCccChhhh-CccccCCCEEeCCCCCchhHHHHHHHHHcCC--CCCCCCccCC
Confidence            4678999999997 44       8899999999999999998644  8999999886

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.41  E-value=1.1e-13  Score=78.24  Aligned_cols=47  Identities=32%  Similarity=0.561  Sum_probs=31.4

Q ss_pred             eeEeeeec-----cce-eeccCCCEEEEeEecCCCeEEEEe-cCCCCceeeeeE
Q psy9673          82 SFIRFFLN-----ILD-LNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYV  128 (162)
Q Consensus        82 ~~~~~~~~-----~~e-l~~~~gd~i~v~~~~~~~w~~g~~-~~~~G~~P~~~v  128 (162)
                      .+++++|+     ..+ |+|++||+|.|+++.+++||.|+. +|+.|+||+|||
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyV   57 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYV   57 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGE
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHE
Confidence            46788887     445 999999999999887766655553 233344444443

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.40  E-value=8.7e-14  Score=77.82  Aligned_cols=45  Identities=36%  Similarity=0.877  Sum_probs=39.5

Q ss_pred             CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .+++.|+||++.+. .|++++|||+||..|+..     ....||+||+.+.
T Consensus         4 ~~~~~C~IC~~~~~-~p~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAK-CPKLLPCLHTLCSGCLEA-----SGMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCB-CCSCSTTSCCSBTTTCSS-----SSSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccC-CeEEcCCCCcccHHHHcc-----CCCCCCcCCcEee
Confidence            56889999999999 889999999999999977     2347999999876

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.40  E-value=7.5e-14  Score=92.51  Aligned_cols=51  Identities=29%  Similarity=0.542  Sum_probs=44.7

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV   56 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~   56 (162)
                      ..+++.+.|+||++++. +|++++|||+||..||.+|+... ...||+||..+
T Consensus        26 ~~l~~~~~C~IC~~~~~-~pv~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~   76 (141)
T 3knv_A           26 TKLEAKYLCSACRNVLR-RPFQAQCGHRYCSFCLASILSSG-PQNCAACVHEG   76 (141)
T ss_dssp             GGCCGGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHGGGS-CEECHHHHHTT
T ss_pred             ccCCcCcCCCCCChhhc-CcEECCCCCccCHHHHHHHHhcC-CCCCCCCCCcc
Confidence            45678999999999999 88999999999999999998753 35899999975

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.40  E-value=6e-14  Score=100.42  Aligned_cols=71  Identities=13%  Similarity=0.285  Sum_probs=61.1

Q ss_pred             cCCCccccccccccccCCCEEc-ccCCccchhcHHHHHhcCCCccccc--ccccccccccCCCcchhhhhhhhcccc
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPE--CRVLVECKVDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp~--Cr~~~~~~~~~l~~n~~l~~i~e~~~~   78 (162)
                      .....+.||||+++|. +|++. .|||+||..||.+|+..++...||+  |+..+.  ...+.+|..+.++++....
T Consensus       177 ~~~~el~CPIcl~~f~-DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~--~~dL~pN~~L~~lve~~k~  250 (267)
T 3htk_C          177 GGKIELTCPITCKPYE-APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS--MRDFVRDPIMELRCKIAKM  250 (267)
T ss_dssp             SSBCCSBCTTTSSBCS-SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC--GGGEEECHHHHHHHHHHHH
T ss_pred             CCceeeECcCccCccc-CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc--hhhCCcCHHHHHHHHHHHH
Confidence            4567899999999999 88875 9999999999999998666678999  999887  6788999999888877654

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.39  E-value=1.3e-12  Score=77.01  Aligned_cols=56  Identities=25%  Similarity=0.294  Sum_probs=44.7

Q ss_pred             eeEeeeec-------cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-------ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-------~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+       ..+|+|++||+|.|+.+.++                       +||.|+++|++|+||++||+.+
T Consensus        10 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------gWw~g~~~g~~G~fP~~yv~~~   66 (73)
T 2ebp_A           10 GRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPM-----------------------GTWMGLLNNKVGTFKFIYVDVL   66 (73)
T ss_dssp             EEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSS-----------------------SCEEEECSSCEEEECSTTEEEC
T ss_pred             eEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCC-----------------------CeEEEEECCCEEEEeHHHEEEC
Confidence            45666666       36899999999999988554                       6777777889999999999999


Q ss_pred             cCCCCC
Q psy9673         155 WYLPII  160 (162)
Q Consensus       155 ~~~~~~  160 (162)
                      ...|+.
T Consensus        67 ~~~~~s   72 (73)
T 2ebp_A           67 SSGPSS   72 (73)
T ss_dssp             CCCSCC
T ss_pred             CCCCCC
Confidence            887764

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.39  E-value=2.5e-13  Score=79.15  Aligned_cols=51  Identities=33%  Similarity=0.829  Sum_probs=43.3

Q ss_pred             cCCCcccccccccccc--CCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           5 TLNDLLECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~--~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ...++..|+||++.+.  ..++.++|||.||..|+.+|+..+.  .||+||..+.
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~--~CP~Cr~~~~   62 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK--KCPICRVDIE   62 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS--BCTTTCSBSC
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC--CCcCcCcccc
Confidence            3456778999999985  2568899999999999999998765  7999999876

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=2.7e-12  Score=75.55  Aligned_cols=59  Identities=27%  Similarity=0.455  Sum_probs=47.6

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+.                    .+++||.|+.+|+.|+||++||+.+.
T Consensus         8 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~--------------------~~~~Ww~g~~~g~~G~~P~~yv~~~~   67 (73)
T 2dl7_A            8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQ--------------------DDDGFWEGEFNGRIGVFPSVLVEELS   67 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCS--------------------SSSSCEEEEETTEEEEECSSSEEECC
T ss_pred             CEEEEECccCCcCCCCcCCCCCCCEEEEEECCCC--------------------CCCCcEEEEECCCEEEEChHHEEECC
Confidence            345677777     67899999999999987421                    14578888889999999999999998


Q ss_pred             CCCC
Q psy9673         156 YLPI  159 (162)
Q Consensus       156 ~~~~  159 (162)
                      ..|.
T Consensus        68 ~~~~   71 (73)
T 2dl7_A           68 SGPS   71 (73)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            7765

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.38  E-value=8.6e-14  Score=89.33  Aligned_cols=66  Identities=24%  Similarity=0.574  Sum_probs=50.2

Q ss_pred             CCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCC-Ccchhhhhhhhc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDEL-PPNVLLMRILEG   75 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l-~~n~~l~~i~e~   75 (162)
                      +.+++.|+||++.+. +|++++|||+||..|+.+|+... ...||+||..+..  ..+ +.+..+..++..
T Consensus        20 ~~~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~--~~~~~~~~~l~~~i~~   86 (116)
T 1rmd_A           20 FVKSISCQICEHILA-DPVETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFP--TDLESPVKSFLNILNS   86 (116)
T ss_dssp             HHHHTBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCG--GGCBCCCHHHHHHHHH
T ss_pred             ccCCCCCCCCCcHhc-CcEEcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCH--hhccccHHHHHHHHHH
Confidence            346789999999999 88999999999999999999863 2489999999862  232 334444444443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.38  E-value=1.8e-13  Score=93.57  Aligned_cols=70  Identities=27%  Similarity=0.569  Sum_probs=55.7

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLF   77 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~   77 (162)
                      ..+.+++.|+||++++. +|++++|||+||..|+.+|+..++ ..||.||..+.  ...+.++..+.+++..+.
T Consensus        13 ~~~~~~~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~--~~~~~~~~~~~~~i~~l~   82 (170)
T 3hcs_A           13 PPLESKYECPICLMALR-EAVQTPCGHRFCKACIIKSIRDAG-HKCPVDNEILL--ENQLFPDNFAKREILSLM   82 (170)
T ss_dssp             SCCCGGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBCC--GGGCEECHHHHHHHHTSE
T ss_pred             cCCCCCCCCCCCChhhc-CcEECCCCCHHHHHHHHHHHHhCC-CCCCCCccCcc--hhhhhhhHHHHHHHhhcc
Confidence            35678899999999999 889999999999999999987533 38999999887  345556666666665543

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.37  E-value=5.2e-13  Score=79.72  Aligned_cols=56  Identities=34%  Similarity=0.719  Sum_probs=45.8

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+++|+.|+||++||+.+.
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~-----------------------gWw~g~~~g~~G~fP~nyV~~~~   74 (79)
T 1z9q_A           18 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINK-----------------------DWLEGTVRGATGIFPLSFVKILK   74 (79)
T ss_dssp             CCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSS-----------------------SEEEEEETTEEEEEEGGGEEESS
T ss_pred             ceEEEEcCccCCCCCCcccccCCCEEEEeEecCC-----------------------CEEEEEECCeEEEecHHHEEECC
Confidence            344667776     77999999999988887544                       67778888999999999999998


Q ss_pred             CCCC
Q psy9673         156 YLPI  159 (162)
Q Consensus       156 ~~~~  159 (162)
                      ++|.
T Consensus        75 ~~p~   78 (79)
T 1z9q_A           75 DFPE   78 (79)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8875

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=1.3e-13  Score=80.58  Aligned_cols=50  Identities=38%  Similarity=0.953  Sum_probs=43.5

Q ss_pred             ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..+.+.+.|+||++.+. . ++++|||.||..|+.+|+...  ..||+||..+.
T Consensus        10 ~~~~~~~~C~IC~~~~~-~-~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~   59 (70)
T 2ecn_A           10 KQLTDEEECCICMDGRA-D-LILPCAHSFCQKCIDKWSDRH--RNCPICRLQMT   59 (70)
T ss_dssp             CCCCCCCCCSSSCCSCC-S-EEETTTEEECHHHHHHSSCCC--SSCHHHHHCTT
T ss_pred             hcCCCCCCCeeCCcCcc-C-cccCCCCcccHHHHHHHHHCc--CcCCCcCCccc
Confidence            44567889999999999 5 899999999999999998843  48999999886

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.37  E-value=3.8e-13  Score=80.11  Aligned_cols=54  Identities=26%  Similarity=0.664  Sum_probs=43.6

Q ss_pred             cccCCCccccccccccccC-CCEEcc--cCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           3 EWTLNDLLECSVCLDRLDT-SSKVLP--CQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         3 ~~~~~~~l~C~iC~~~~~~-~p~~~~--C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ...+++++.|+||++.+.. ++..++  |||+||..|+.+++.. ....||.||+.+.
T Consensus         5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~   61 (78)
T 1e4u_A            5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYP   61 (78)
T ss_dssp             SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCS
T ss_pred             ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccC
Confidence            3457889999999998852 455555  9999999999988754 3468999999886

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.37  E-value=1.9e-12  Score=76.19  Aligned_cols=56  Identities=34%  Similarity=0.682  Sum_probs=46.1

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|++||+|.++.+.++                       +||.|+.+|+.|+||++||+.+.
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~W~~g~~~g~~G~~P~~yv~~~~   69 (73)
T 3c0c_A           13 QPSCKALYDFEPENDGELGFREGDLITLTNQIDE-----------------------NWYEGMLHGQSGFFPLSYVQVLV   69 (73)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSS-----------------------SEEEEEETTEEEEEEGGGEEEEE
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEecCC-----------------------CEEEEEECCCEEEeChHHEEECC
Confidence            455677777     67999999999999988554                       67777778999999999999998


Q ss_pred             CCCC
Q psy9673         156 YLPI  159 (162)
Q Consensus       156 ~~~~  159 (162)
                      ++|.
T Consensus        70 ~~p~   73 (73)
T 3c0c_A           70 PLPQ   73 (73)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8873

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.37  E-value=2.9e-13  Score=75.29  Aligned_cols=49  Identities=33%  Similarity=0.794  Sum_probs=41.6

Q ss_pred             CCccccccccccccC---CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~---~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .++..|+||++.+.+   .++.++|+|.||..|+.+|+...  ..||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~   54 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS   54 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred             CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence            356789999999963   37889999999999999999876  48999998764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.36  E-value=2.6e-13  Score=83.36  Aligned_cols=50  Identities=26%  Similarity=0.691  Sum_probs=42.4

Q ss_pred             CCCccccccccccccC--CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDT--SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~--~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..++..|+||++.+..  .++.++|+|.||..|+..|+..+.  .||+||..+.
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~--~CP~Cr~~~~   88 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG--TCPVCRCMFP   88 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC--BCTTTCCBSS
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC--cCcCcCccCC
Confidence            4567889999999972  277789999999999999998654  8999999875

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=3.4e-13  Score=79.91  Aligned_cols=50  Identities=30%  Similarity=0.788  Sum_probs=42.0

Q ss_pred             CCCccccccccccccCC--CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDTS--SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~--p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..++..|+||++.+...  .+.++|+|.||..|+.+|+..+.  .||+||+.+.
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~--~CP~Cr~~~~   71 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR--TCPICRADSG   71 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS--SCTTTCCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC--cCcCcCCcCC
Confidence            34677899999999732  37789999999999999998654  8999999875

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.34  E-value=1.7e-12  Score=74.54  Aligned_cols=52  Identities=27%  Similarity=0.457  Sum_probs=38.1

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ...+++|+     ..+|+|.+||+|.|+++.+++||.|+...                     +|+.|+||++|||++
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~---------------------~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            7 FSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRR---------------------TKQFGTFPGNYVKPL   63 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETT---------------------TCCEEEEETTSEEEC
T ss_pred             EEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECC---------------------CCCEEEEehhHeEEE
Confidence            34567777     78999999999999988776555554310                     477777777777775

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.34  E-value=5.1e-12  Score=73.52  Aligned_cols=58  Identities=33%  Similarity=0.529  Sum_probs=45.1

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+..                     .+++||.|+.+|+.|+||++||+.+..
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~---------------------~~~gWw~g~~~g~~G~~P~~yV~~~~~   61 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDC---------------------IDVGWWEGELNGRRGVFPDNFVKLLPP   61 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCC---------------------SSTTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCC---------------------CCCCEEEEEECCcEEEecHHHEEECCC
Confidence            34667776     7799999999999998841                     134678888888999999999998877


Q ss_pred             CCCC
Q psy9673         157 LPII  160 (162)
Q Consensus       157 ~~~~  160 (162)
                      .+-+
T Consensus        62 ~~~~   65 (69)
T 2ydl_A           62 LEHH   65 (69)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            6643

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=5.1e-13  Score=78.87  Aligned_cols=52  Identities=35%  Similarity=0.700  Sum_probs=42.8

Q ss_pred             ccCCCccccccccccccCC--CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           4 WTLNDLLECSVCLDRLDTS--SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         4 ~~~~~~l~C~iC~~~~~~~--p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..+.++..|+||++.+...  ..+++|+|.||..|+.+|+..+.  .||+||..+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~--~CP~Cr~~~~   63 (74)
T 2ep4_A           10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK--VCPLCNMPVL   63 (74)
T ss_dssp             CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS--BCTTTCCBCS
T ss_pred             ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC--cCCCcCcccc
Confidence            3456788999999999632  34559999999999999998765  8999999875

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.33  E-value=4.5e-12  Score=76.12  Aligned_cols=59  Identities=19%  Similarity=0.464  Sum_probs=47.0

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+                     .+++||.|+.+|+.|+||++||+.+.
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---------------------~~~~Ww~g~~~g~~G~~P~~yv~~~~   75 (81)
T 1x43_A           17 NRKARVLYDYDAANSTELSLLADEVITVFSVVG---------------------MDSDWLMGERGNQKGKVPITYLELLN   75 (81)
T ss_dssp             CEEEEESSCCCCSSTTBCCCCTTCEEEEECCTT---------------------CCTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCC---------------------CCCCcEEEEECCCEEEEehHHEEECC
Confidence            456778887     6799999999999988732                     13467888888999999999999988


Q ss_pred             CCCCC
Q psy9673         156 YLPII  160 (162)
Q Consensus       156 ~~~~~  160 (162)
                      ..+++
T Consensus        76 ~~~~s   80 (81)
T 1x43_A           76 SGPSS   80 (81)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            77654

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.33  E-value=4.2e-12  Score=72.37  Aligned_cols=51  Identities=24%  Similarity=0.408  Sum_probs=38.2

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEe-cCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRK-IDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~-~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~  157 (162)
                      ++++|+     ..+|+|.+||+|.++.+ .++                       +||.|+.+|+.|+||++||+++.+.
T Consensus         4 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~~~   60 (62)
T 2j6f_A            4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEE-----------------------GWLEGELNGRRGMFPDNFVKEIKRE   60 (62)
T ss_dssp             EEECSCBCCSSTTBCCBCTTCEEEEEEECSST-----------------------TEEEEEETTEEEEEEGGGEEECC--
T ss_pred             EEECccCCcCCcCCcCCcCCCEEEEEEecCCC-----------------------CEEEEEECCcEEEechHHEEECCCC
Confidence            455665     67999999999999887 443                       5677777788888888888877654

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.32  E-value=4.4e-12  Score=75.99  Aligned_cols=56  Identities=30%  Similarity=0.596  Sum_probs=43.8

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+++                      +||.|+++|+.|+||++||+.+.
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~----------------------gWw~g~~~g~~G~fP~~yv~~~~   67 (80)
T 2i0n_A           10 AKYARALKDYNVSDTSLLPFKRNDIITITFKDQEN----------------------KWFMGQLNGKEGSFPVDHVEILL   67 (80)
T ss_dssp             CCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSS----------------------SEEEEEETTEEEEEEGGGEEEES
T ss_pred             CeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCC----------------------CEEEEEECCcEEEechHHEEECC
Confidence            455677777     778999999999999886542                      37777778888888888888876


Q ss_pred             CCC
Q psy9673         156 YLP  158 (162)
Q Consensus       156 ~~~  158 (162)
                      ...
T Consensus        68 ~~~   70 (80)
T 2i0n_A           68 SDV   70 (80)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            543

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=9e-12  Score=74.43  Aligned_cols=56  Identities=27%  Similarity=0.441  Sum_probs=45.8

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|++||+|.|+.+.++                       +||.|+++|+.|+||++||+.+.
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~   73 (79)
T 1x69_A           17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDD-----------------------GWWRGVCKGRYGLFPANYVELRQ   73 (79)
T ss_dssp             CCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSS-----------------------SEEEEEETTEEEEEETTSEEECC
T ss_pred             CeEEEECccCCCCCCCCcCcCCCCEEEEeEecCC-----------------------CeEEEEECCcEEEechHHEEECC
Confidence            345677777     67999999999999887544                       67777788999999999999998


Q ss_pred             CCCC
Q psy9673         156 YLPI  159 (162)
Q Consensus       156 ~~~~  159 (162)
                      ..|.
T Consensus        74 ~~p~   77 (79)
T 1x69_A           74 SGPS   77 (79)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            8775

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.32  E-value=8e-12  Score=72.29  Aligned_cols=47  Identities=32%  Similarity=0.354  Sum_probs=36.1

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCCCC
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLPI  159 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~~~  159 (162)
                      ..+|+|.+||+|.|+.+.++                       +||.|+.+|++|+||++||+++....+
T Consensus        17 ~~eLsf~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~fP~~yv~~~~~~~~   63 (67)
T 2bzy_A           17 KTALALEVGDIVKVTRMNIN-----------------------GQWEGEVNGRKGLFPFTHVKIFDPQNP   63 (67)
T ss_dssp             TTBCCBCTTCEEEEEEECSS-----------------------SEEEEEETTEEEEEEGGGEEECCSCC-
T ss_pred             CCccccCCCCEEEEEEecCC-----------------------CeEEEEeCCcEEEEehHHeEECCCcCc
Confidence            45899999999999888554                       566677778888888888888765443

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.31  E-value=5.5e-12  Score=74.23  Aligned_cols=57  Identities=35%  Similarity=0.680  Sum_probs=46.1

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~   63 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDE-----------------------NWYEGMLHGHSGFFPINYVEILV   63 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSS-----------------------SEEEEEETTEEEEEESSSEEESS
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEecCC-----------------------CEEEEEECCCEEEechHHEEEcc
Confidence            345677776     67999999999998887543                       67777788999999999999998


Q ss_pred             CCCCC
Q psy9673         156 YLPII  160 (162)
Q Consensus       156 ~~~~~  160 (162)
                      ++|..
T Consensus        64 ~~~~~   68 (73)
T 2dbm_A           64 ALPHS   68 (73)
T ss_dssp             CCSCC
T ss_pred             CCCCC
Confidence            87754

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.31  E-value=8.3e-13  Score=84.43  Aligned_cols=49  Identities=24%  Similarity=0.728  Sum_probs=39.7

Q ss_pred             CccccccccccccCCCE------------------EcccCCccchhcHHHHHhc---CCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTSSK------------------VLPCQHTFCKKCLEEIVSS---HKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~------------------~~~C~H~fC~~Cl~~~~~~---~~~~~Cp~Cr~~~~   57 (162)
                      .+..|+||++.|. .+.                  +++|+|.||..||..|+..   .....||+||+.+.
T Consensus        24 ~~~~C~ICl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~   93 (114)
T 1v87_A           24 PEEDCIICMEKLA-VASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETT-SCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             CCCcCccCChhhc-CcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence            4568999999996 322                  7899999999999999953   22458999999886

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.2e-11  Score=72.51  Aligned_cols=56  Identities=21%  Similarity=0.337  Sum_probs=44.0

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+++.
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~   65 (72)
T 2dl8_A            9 PIEAIAKFDYVGRTARELSFKKGASLLLYQRASD-----------------------DWWEGRHNGIDGLIPHQYIVVQD   65 (72)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEET-----------------------TEEEEEETTEEEEECSSSEEECC
T ss_pred             CEEEEECccCCcCCCCEeccCCCCEEEEEeecCC-----------------------CEEEEEECCEEEEEchHHeEEcC
Confidence            345677777     67899999999999887443                       67777778889999999999887


Q ss_pred             CCCC
Q psy9673         156 YLPI  159 (162)
Q Consensus       156 ~~~~  159 (162)
                      +..+
T Consensus        66 ~~~p   69 (72)
T 2dl8_A           66 TSGP   69 (72)
T ss_dssp             SSSC
T ss_pred             CCCC
Confidence            6544

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.30  E-value=1.1e-11  Score=71.97  Aligned_cols=55  Identities=38%  Similarity=0.692  Sum_probs=42.3

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDE-----------------------NWYQGEINGVSGIFPASSVEVIS   63 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCS-----------------------SEEEEEETTEEEEEESSSEETTC
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEecCC-----------------------CEEEEEECCcEEEeehHHEEEcC
Confidence            345667776     67999999999999887554                       56777777888888888888876


Q ss_pred             CCC
Q psy9673         156 YLP  158 (162)
Q Consensus       156 ~~~  158 (162)
                      +..
T Consensus        64 ~~~   66 (68)
T 2djq_A           64 GPS   66 (68)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            543

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.29  E-value=3.3e-12  Score=71.81  Aligned_cols=35  Identities=23%  Similarity=0.496  Sum_probs=25.6

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEec
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVN  117 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~  117 (162)
                      .++++|+     ..+|+|.+||+|.++.+.+++||.|+..
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~   41 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELE   41 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEEC
Confidence            3556666     6799999999999999866655555443

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.29  E-value=3.9e-12  Score=73.84  Aligned_cols=53  Identities=36%  Similarity=0.723  Sum_probs=40.1

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      +.++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+.+..
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~~   60 (68)
T 2ew3_A            4 PCCRGLYDFEPENQGELGFKEGDIITLTNQIDE-----------------------NWYEGMIHGESGFFPINYVEVIVP   60 (68)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEESSS-----------------------SEEEEEETTEEEEEEGGGEEESCC
T ss_pred             CEEEEeeeECCCCCCccCCCCCCEEEEEEecCC-----------------------CEEEEEECCcEEEeeHHHEEEcCc
Confidence            45667776     77999999999999988654                       566666677888888888887754


Q ss_pred             C
Q psy9673         157 L  157 (162)
Q Consensus       157 ~  157 (162)
                      +
T Consensus        61 ~   61 (68)
T 2ew3_A           61 L   61 (68)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.28  E-value=4.3e-12  Score=71.85  Aligned_cols=50  Identities=36%  Similarity=0.788  Sum_probs=36.2

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|.+||+|.+..+.+++                       ||.|+.+|+.|+||++||+++
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKD-----------------------WLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSS-----------------------EEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEeCCCC-----------------------eEEEEECCCEEEechHHEEEC
Confidence            34666766     678999999999999886654                       555555666677777776654

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.28  E-value=3.7e-12  Score=73.29  Aligned_cols=51  Identities=33%  Similarity=0.675  Sum_probs=38.2

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      .++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+.+..
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~fP~~yv~~~~~   58 (65)
T 2nwm_A            3 AARLKFDFQAQSPKELTLQKGDIVYIHKEVDK-----------------------NWLEGEHHGRLGIFPANYVEVLPL   58 (65)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCTT-----------------------TCEEEEETTEEEEECGGGEEECCC
T ss_pred             EEEEeeeECCCCcCccCCcCCCEEEEEEecCC-----------------------CEEEEEECCcEEEEehhhEEEcCC
Confidence            3566666     67999999999999887554                       566666677777778888777643

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.27  E-value=3.8e-12  Score=72.06  Aligned_cols=49  Identities=27%  Similarity=0.552  Sum_probs=33.6

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ  129 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~  129 (162)
                      ...++++|+     ..+|+|++||+|.|+.+.+++||.|+.+|+.|+||++||+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~   59 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV   59 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEE
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEE
Confidence            345677777     6799999999999998866655555555444555544443

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.27  E-value=5.1e-12  Score=71.03  Aligned_cols=49  Identities=27%  Similarity=0.482  Sum_probs=36.2

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      +.++|+     ..+|+|.+||+|.+..+.++                       +||.|+.+|+.|+||++||+++.
T Consensus         4 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            4 AIVEFDYQAQHDDELTISVGEIITNIRKEDG-----------------------GWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCTT-----------------------TEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEECcccCCCCcCEeeECCCCEEEEEEeCCC-----------------------CEEEEEECCeEEEEehHHeEEcC
Confidence            455665     67999999999999988655                       45666666777777777777653

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=2.1e-11  Score=72.26  Aligned_cols=55  Identities=24%  Similarity=0.474  Sum_probs=43.1

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+++.
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~   66 (76)
T 2epd_A           10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASS-----------------------DWWRGEHNGMRGLIPHKYITLPA   66 (76)
T ss_dssp             CEEEEESSCEECSSTTBCEECTTCEEEEEEEEET-----------------------TEEEEEETTEEEEEESSSEECCS
T ss_pred             CEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCC-----------------------CEEEEEECCcEEEEehHHEEEcC
Confidence            345777777     67999999999999888543                       67777777888888888888876


Q ss_pred             CCC
Q psy9673         156 YLP  158 (162)
Q Consensus       156 ~~~  158 (162)
                      ...
T Consensus        67 ~~~   69 (76)
T 2epd_A           67 GTE   69 (76)
T ss_dssp             SCS
T ss_pred             CCC
Confidence            543

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.26  E-value=5.1e-12  Score=74.09  Aligned_cols=49  Identities=29%  Similarity=0.564  Sum_probs=33.8

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ  129 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~  129 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+++||.|+.+++.|+||++||+
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~   70 (72)
T 2l0a_A           17 ARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVT   70 (72)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEE
T ss_pred             CeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCc
Confidence            455777777     7799999999999998866655555554444444444443

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.26  E-value=6e-12  Score=70.72  Aligned_cols=49  Identities=22%  Similarity=0.546  Sum_probs=35.7

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      .++++|+     ..+|+|.+||+|.+..+.++                       +||.|+.+|+.|+||++||+++
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~   56 (58)
T 1uti_A            3 WARALYDFEALEEDELGFRSGEVVEVLDSSNP-----------------------SWWTGRLHNKLGLFPANYVAPM   56 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSS-----------------------SEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECccCCCCCcCCCCCCCCCEEEEEEECCC-----------------------CEEEEEECCeEEEeeHHHeEEc
Confidence            3556666     67999999999999988555                       4555666667777777777664

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.26  E-value=6.9e-12  Score=70.46  Aligned_cols=49  Identities=35%  Similarity=0.638  Sum_probs=35.4

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      .++++|+     ..+|+|.+||+|.++.+.+++                       ||.|+.+|+.|+||++||+++
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            4 YVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPE-----------------------WYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECSSS-----------------------EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCccCCCCCEEEEEEecCCC-----------------------EEEEEECCcEEEeeHHHEEEc
Confidence            4566666     779999999999999886554                       555555666666777776654

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.26  E-value=1.4e-11  Score=72.98  Aligned_cols=56  Identities=23%  Similarity=0.539  Sum_probs=42.4

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECC---eEEeecCCCeE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNG---TTGAFPMSYVQ  152 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g---~~g~~p~~~~~  152 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+++                       ||.|+++|   +.|+||++||+
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~-----------------------Ww~g~~~~~~g~~G~~P~~yv~   66 (76)
T 2ed1_A           10 VRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQE-----------------------WWIGHIEGQPERKGVFPVSFVH   66 (76)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSS-----------------------EEEEEETTCTTCEEEEEGGGEE
T ss_pred             CeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCC-----------------------EEEEEECCCCCCEEEEehHHeE
Confidence            456777877     779999999999998875554                       55555544   88888888888


Q ss_pred             eccCCCC
Q psy9673         153 FVWYLPI  159 (162)
Q Consensus       153 ~~~~~~~  159 (162)
                      ++....+
T Consensus        67 ~~~~~~p   73 (76)
T 2ed1_A           67 ILSDSGP   73 (76)
T ss_dssp             ECCCCCC
T ss_pred             ECCCCCC
Confidence            8876544

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.26  E-value=1.3e-12  Score=85.42  Aligned_cols=49  Identities=27%  Similarity=0.790  Sum_probs=43.2

Q ss_pred             CCCccccccccccccCCC-------EEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDTSS-------KVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p-------~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ..+++.|+||++.+. +|       ++++|||+||..|+.+|+..+.  .||+||+.+.
T Consensus         4 ~~~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~   59 (133)
T 4ap4_A            4 GSGTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKIN   59 (133)
T ss_dssp             -CCSCBCTTTCCBHH-HHHHTTCCEEEETTCCEEEHHHHHHHHTTCS--BCTTTCCBCT
T ss_pred             CCCCCCCcccChhhh-CccccccCeEecCCCChhhHHHHHHHHHhCC--CCCCCCCcCc
Confidence            356889999999998 66       9999999999999999998655  8999999886

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.25  E-value=8.6e-12  Score=70.57  Aligned_cols=45  Identities=22%  Similarity=0.526  Sum_probs=29.7

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeee
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMS  126 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~  126 (162)
                      ..++++|+     ..+|+|.+||+|.++.+.+++||.|+.+|+.|+||++
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~   55 (60)
T 2xmf_A            6 PQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNN   55 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGG
T ss_pred             cEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHH
Confidence            45666776     6799999999999998866555444443333333333

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.25  E-value=8.2e-12  Score=70.40  Aligned_cols=44  Identities=34%  Similarity=0.628  Sum_probs=28.9

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeee
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMS  126 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~  126 (162)
                      .++++|+     ..+|+|++||+|.+..+.+++||.|+.+|+.|+||++
T Consensus         6 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~   54 (59)
T 2g6f_X            6 VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSN   54 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGG
T ss_pred             EEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHH
Confidence            4566666     6799999999999998866655444443333333333

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2.7e-11  Score=73.79  Aligned_cols=52  Identities=31%  Similarity=0.390  Sum_probs=39.6

Q ss_pred             eeEeeeec-------cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-------ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-------~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+       ..+|.|.+||+|.|+.+.++                       +||.|+++|++|+||++||+.+
T Consensus        17 ~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~fP~~yv~~~   73 (88)
T 2dbk_A           17 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNIN-----------------------GQWEGEVNGRKGLFPFTHVKIF   73 (88)
T ss_dssp             EEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTT-----------------------SCEEEECSSCEEEECTTTEEEC
T ss_pred             EEEEEcccccCCCCCCCcccCCCCCEEEEEEecCC-----------------------CEEEEEeCCCEEEEehHHeEEC
Confidence            45666766       45799999999999988655                       5666667788888888888887


Q ss_pred             cC
Q psy9673         155 WY  156 (162)
Q Consensus       155 ~~  156 (162)
                      ..
T Consensus        74 ~~   75 (88)
T 2dbk_A           74 DP   75 (88)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=1.8e-11  Score=72.03  Aligned_cols=55  Identities=29%  Similarity=0.511  Sum_probs=43.3

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.++                     +++||.|+.+|+.|+||++||+++..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~---------------------~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (73)
T 2dm1_A            8 GTAVARYNFAARDMRELSLREGDVVRIYSRIGG---------------------DQGWWKGETNGRIGWFPSTYVEEEGI   66 (73)
T ss_dssp             SEEEESSCBCCCSTTBCCBCTTCEEECCBSSSS---------------------SSSCEEEEETTEEEEECSSSEEECCC
T ss_pred             CEEEECccCCcCCCCcCCCCCCCEEEEEEecCC---------------------CCCeEEEEECCeEEEeehHHEEEcCC
Confidence            44667776     67999999999999887532                     34688888889999999999998754


Q ss_pred             C
Q psy9673         157 L  157 (162)
Q Consensus       157 ~  157 (162)
                      .
T Consensus        67 ~   67 (73)
T 2dm1_A           67 Q   67 (73)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.25  E-value=1e-11  Score=71.76  Aligned_cols=55  Identities=18%  Similarity=0.233  Sum_probs=39.0

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEE-ECCeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE-VNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~-~~g~~g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+ ++                       +||.|+ .+|+.|+||++||+.+.
T Consensus         5 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~-----------------------~Ww~~~~~~g~~G~~Psnyv~~~~   60 (67)
T 2b86_A            5 VIVIAKWDYTAQQDQELDIKKNERLWLLDD-SK-----------------------TWWRVRNAANRTGYVPSNYVERKL   60 (67)
T ss_dssp             EEEEESSCBCCSSTTSCCBCTTCEEEEEEC-SS-----------------------SSCEEECTTSCEEECCCCSEEEC-
T ss_pred             eEEEEeeeECCCCCCccccCCCCEEEEEec-CC-----------------------CeEEEEeCCCCEEEeChHHEeEcC
Confidence            34667777     67999999999999887 33                       566666 36889999999999998


Q ss_pred             CCCCC
Q psy9673         156 YLPII  160 (162)
Q Consensus       156 ~~~~~  160 (162)
                      +.|+.
T Consensus        61 ~~~~~   65 (67)
T 2b86_A           61 EHHHH   65 (67)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            88764

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.24  E-value=1.6e-11  Score=73.33  Aligned_cols=59  Identities=19%  Similarity=0.265  Sum_probs=44.4

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+..                   .+++||.|+.+|+.|+||++||+.+..
T Consensus        14 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~-------------------~~~~Ww~g~~~g~~G~~P~~yv~~~~~   74 (79)
T 1uhc_A           14 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVT-------------------GNTEWWLAEVNGKKGYVPSNYIRKTES   74 (79)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTT-------------------SCTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             eEEEECccCCCCCCCccCCCCCCEEEEEECCCCC-------------------CCCCeEEEEeCCCEEEEchHHeEECCC
Confidence            34666776     779999999999999986510                   124677777778888888888888876


Q ss_pred             CCC
Q psy9673         157 LPI  159 (162)
Q Consensus       157 ~~~  159 (162)
                      .+.
T Consensus        75 ~~~   77 (79)
T 1uhc_A           75 GPS   77 (79)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            553

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.24  E-value=5.6e-12  Score=71.81  Aligned_cols=50  Identities=30%  Similarity=0.646  Sum_probs=36.5

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+++                       ||.|+.+|+.|+||++||+++
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1k4u_S            6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEE-----------------------WLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             EEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSS-----------------------CEEEECSSCEEEECGGGCCCS
T ss_pred             eEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCC-----------------------EEEEEECCcEEEEeHHHEEEC
Confidence            45666776     679999999999999886654                       555555666777777777654

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.24  E-value=1e-11  Score=69.74  Aligned_cols=49  Identities=35%  Similarity=0.685  Sum_probs=34.8

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      .++++|+     ..+|+|.+||+|.++.+.+++                       ||.|+.+|+.|+||++||+++
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            4 FVQALFDFNPQESGELAFKRGDVITLINKDDPN-----------------------WWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSS-----------------------EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCCCCCCCcCCCCCCEEEEEEecCCC-----------------------EEEEEECCcEEEechHHeEEC
Confidence            4556666     679999999999999886654                       555555566666666666654

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.24  E-value=5.5e-12  Score=72.99  Aligned_cols=51  Identities=22%  Similarity=0.375  Sum_probs=37.9

Q ss_pred             eeEeeeec-------cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-------ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-------~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+       ..+|+|.+||+|.|+.+.++                       +||.|+++|+.|+||++||+++
T Consensus         7 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------gWw~g~~~g~~G~fP~~yv~~~   63 (67)
T 2eyx_A            7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVS-----------------------GQWEGECNGKRGHFPFTHVRLL   63 (67)
T ss_dssp             CBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTT-----------------------SEEEEEETTEEEEEEGGGBCCB
T ss_pred             EEEEEeEEECCCCCCCCccccCCCCEEEEEEecCC-----------------------CEEEEEECCCEEEEehHhEEEc
Confidence            34566666       34899999999999888555                       5666666777888888888776


Q ss_pred             c
Q psy9673         155 W  155 (162)
Q Consensus       155 ~  155 (162)
                      .
T Consensus        64 ~   64 (67)
T 2eyx_A           64 D   64 (67)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.24  E-value=1.1e-11  Score=69.56  Aligned_cols=48  Identities=31%  Similarity=0.618  Sum_probs=32.6

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ  129 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~  129 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+++||.|+.+|+.|+||++||+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~   56 (58)
T 1zlm_A            4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA   56 (58)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEE
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEE
Confidence            34566666     6799999999999998866666555554444444444443

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.23  E-value=1.7e-11  Score=68.81  Aligned_cols=46  Identities=24%  Similarity=0.417  Sum_probs=30.4

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV  128 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v  128 (162)
                      .++++|+     ..+|+|.+||+|.++.+.+++||.|..+|+.|+||++||
T Consensus         3 ~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv   53 (58)
T 4e6r_A            3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYV   53 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGE
T ss_pred             EEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHE
Confidence            4566666     778999999999999887665555544443344443333

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=4.5e-11  Score=71.54  Aligned_cols=52  Identities=15%  Similarity=0.181  Sum_probs=40.4

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ...+++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+++..
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~-----------------------gWw~g~~~g~~G~~P~~yv~~~~~   65 (80)
T 2ekh_A            9 TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQES-----------------------GWWYVRFGELEGWAPSHYLVLDEN   65 (80)
T ss_dssp             EEEEECSCBCCSSTTSCCBCTTCEEEEEEECTT-----------------------SEEEEEETTEEEEEETTTEECCCC
T ss_pred             CEEEECCCCCCCCCCccCcCCCCEEEEEEeCCC-----------------------CeEEEEECCCEEEEEhHHeEECCC
Confidence            44666776     78999999999999988654                       566677778888888888887754

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.23  E-value=9.6e-12  Score=71.51  Aligned_cols=34  Identities=35%  Similarity=0.721  Sum_probs=26.1

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE  115 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~  115 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+++||.|+
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~   42 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE   42 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEE
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEE
Confidence            34666776     77999999999999998766555555

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=3.6e-11  Score=73.25  Aligned_cols=55  Identities=29%  Similarity=0.401  Sum_probs=42.9

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|.|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+.+.+
T Consensus        18 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------gWw~g~~~g~~G~~P~~yv~~~~~   74 (88)
T 2cub_A           18 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSD-----------------------GWWRGSYNGQVGWFPSNYVTEEGD   74 (88)
T ss_dssp             EEEEESSCCCCCSTTBCCCCTTEEEEEEEECTT-----------------------SEEEEEETTEEEEEEGGGEEECCC
T ss_pred             CEEEEccccCCCCCCCcCCCCCCEEEEEEccCC-----------------------CeEEEEECCcEEEEehHHEEECCC
Confidence            34666776     78999999999999988655                       566666778888888888888866


Q ss_pred             CCC
Q psy9673         157 LPI  159 (162)
Q Consensus       157 ~~~  159 (162)
                      .+.
T Consensus        75 ~~~   77 (88)
T 2cub_A           75 SPL   77 (88)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            554

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.23  E-value=2.4e-12  Score=74.09  Aligned_cols=51  Identities=22%  Similarity=0.515  Sum_probs=38.7

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      .++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|++|+||++||+.+..
T Consensus         3 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------gWw~g~~~g~~G~fP~~yv~~~~~   58 (65)
T 2fei_A            3 QCKVLFEYIPQNEDELELKVGDIIDINEEVEE-----------------------GWWSGTLNNKLGLFPSNFVKELEL   58 (65)
T ss_dssp             EEECSSCCCCCSTTBCCCCTTCEEECCCCSSS-----------------------SEEEEESSSCEEEEETTTSCBCCC
T ss_pred             EEEECccCCcCCcCccCCCCCCEEEEEEecCC-----------------------CEEEEEECCcEEEecHHHEEEcCC
Confidence            3556666     77999999999998877554                       566666678888888888887643

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.23  E-value=2.7e-11  Score=70.84  Aligned_cols=58  Identities=22%  Similarity=0.410  Sum_probs=44.4

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEE-ECCeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE-VNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~-~~g~~g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+                     .+++||.|+ .+|+.|+||++||+.+.
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---------------------~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (71)
T 1u5s_A            7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPE---------------------NDPEWWKCKNARGQVGLVPKNYVVVLS   65 (71)
T ss_dssp             SEEEESSCCCCCSSSBCCCCSSCCEEEEECCC---------------------TTTCEEEEEETTTEEEEEETTSEEECC
T ss_pred             EEEEEcccCCCCCCCcccCCCCCEEEEEECCC---------------------CCCCCEEEEeCCCCEEEEeHHHEEECC
Confidence            45667776     6789999999999998832                     134667775 57899999999999987


Q ss_pred             CCCCC
Q psy9673         156 YLPII  160 (162)
Q Consensus       156 ~~~~~  160 (162)
                      ..+..
T Consensus        66 ~~~~~   70 (71)
T 1u5s_A           66 DGPAL   70 (71)
T ss_dssp             CSCCC
T ss_pred             CCCCC
Confidence            76653

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1e-11  Score=72.06  Aligned_cols=53  Identities=25%  Similarity=0.342  Sum_probs=41.8

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+++.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGND-----------------------NWATVMFNGQKGLVPCNYLEPVS   63 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSS-----------------------SCEEEEETTEEEEECSTTEEECC
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCC-----------------------CEEEEEeCCCEEEeehHHeEECC
Confidence            345677777     77999999999999988554                       56677777888888888888875


Q ss_pred             C
Q psy9673         156 Y  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus        64 ~   64 (68)
T 2dmo_A           64 G   64 (68)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.22  E-value=1.4e-11  Score=70.62  Aligned_cols=52  Identities=33%  Similarity=0.553  Sum_probs=39.1

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+.+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            7 LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEG-----------------------GWWEGTHNGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCTT-----------------------SEEEEEETTEEEEEEGGGEEECCC
T ss_pred             EEEEEccccCCcCcCcccCCCCCEEEEeEecCC-----------------------CEEEEEECCCEEEEehHHeEEcCC
Confidence            34666766     67999999999999887555                       566666667778888888877654

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.22  E-value=1.1e-11  Score=69.34  Aligned_cols=47  Identities=36%  Similarity=0.774  Sum_probs=33.1

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeEE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ  129 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v~  129 (162)
                      .++++|+     ..+|+|.+||+|.+..+.+++||.|+ .+|+.|+||++||+
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~   55 (57)
T 1cka_A            3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE   55 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEE
T ss_pred             EEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEE
Confidence            3556666     67899999999999998777676666 45555555555543

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=5e-12  Score=75.90  Aligned_cols=48  Identities=25%  Similarity=0.570  Sum_probs=39.5

Q ss_pred             CccccccccccccCC-------------CEEcc-cCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTS-------------SKVLP-CQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~-------------p~~~~-C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ++..|+||++.|...             +++++ |+|.||..||.+|+..+.  .||+||+.+.
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~~~   75 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN--RCPLCQQDWV   75 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC--BCTTTCCBCC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC--CCCCcCCCcc
Confidence            566799999999631             55554 999999999999998765  8999999875

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.22  E-value=1.3e-11  Score=71.67  Aligned_cols=37  Identities=30%  Similarity=0.496  Sum_probs=28.4

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNG  118 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~  118 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+++||.|+..+
T Consensus         8 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~   49 (68)
T 1tg0_A            8 FKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQD   49 (68)
T ss_dssp             EEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEEC
T ss_pred             EEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECC
Confidence            35677777     77999999999999988776666665443

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.22  E-value=1.6e-11  Score=68.95  Aligned_cols=46  Identities=30%  Similarity=0.606  Sum_probs=30.0

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeee
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSY  127 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~  127 (162)
                      ..++++|+     ..+|+|.+||+|.++.+.+++||.|+.+|+.|+||++|
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~y   54 (58)
T 2drm_A            4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANY   54 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGG
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHH
Confidence            34566666     67999999999999988666555544433333333333

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.22  E-value=1.4e-11  Score=69.63  Aligned_cols=52  Identities=37%  Similarity=0.720  Sum_probs=37.3

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|.+||+|.++.+.+.                     +++||.|+.+|+.|+||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~---------------------~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDS---------------------QNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSC---------------------TTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCEeeEcCCCEEEEEEeCCC---------------------CCCeEEEEECCEEEEEeHHHEEEC
Confidence            34566666     67999999999999988621                     235666666677777777777653

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.22  E-value=1.5e-11  Score=70.48  Aligned_cols=52  Identities=27%  Similarity=0.581  Sum_probs=39.6

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|.+||+|.++.+.+                     .+++||.|+.+|+.|+||++||+++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---------------------~~~~W~~g~~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            7 EYCRTLFPYTGTNEDELTFREGEIIHLISKET---------------------GEAGWWKGELNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCEEEEEESCS---------------------SSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECccCCccCCCccCCCCCCEEEEEECCC---------------------CCCCEEEEEECCeEEEEeHHHEEEC
Confidence            45667776     7799999999999988742                     1346777777788888888888765

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.22  E-value=1.4e-11  Score=69.14  Aligned_cols=49  Identities=31%  Similarity=0.698  Sum_probs=35.1

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      .++++|+     ..+|+|.+||+|.++.+.+++                       ||.|+.+|+.|+||++||+++
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            4 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPN-----------------------WWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSS-----------------------EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECceECCCCcCCcCCCCCCEEEEEEcCCCC-----------------------EEEEEECCcEEEEchHHeEEC
Confidence            4556666     679999999999999886554                       555555666666666666654

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.22  E-value=1.3e-11  Score=70.24  Aligned_cols=48  Identities=29%  Similarity=0.594  Sum_probs=32.3

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ  129 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~  129 (162)
                      ..++++|+     ..+|+|.+||+|.++.+.+++||.|+..++.|+||++||+
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~   58 (62)
T 1uj0_A            6 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT   58 (62)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEE
T ss_pred             eEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEE
Confidence            45667776     6789999999999998866655555544444444444443

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.5e-11  Score=71.35  Aligned_cols=53  Identities=23%  Similarity=0.420  Sum_probs=40.9

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNE-----------------------DWWKGKIQDRIGFFPANFVQRLS   63 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCS-----------------------SEEEEECSSCEEEEETTTEEECC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCC-----------------------CEEEEEECCcEEEEehHHeEECC
Confidence            345667776     77999999999999987554                       56666667888888888888875


Q ss_pred             C
Q psy9673         156 Y  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus        64 ~   64 (68)
T 2dl4_A           64 G   64 (68)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=4.7e-11  Score=72.74  Aligned_cols=55  Identities=27%  Similarity=0.507  Sum_probs=41.6

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|.|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+++.
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~   73 (88)
T 1x2q_A           17 ARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDA-----------------------NWWKGENHRGIGLFPSNFVTTNL   73 (88)
T ss_dssp             CEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCS-----------------------SSEEEEETTEEEEECGGGEESCS
T ss_pred             CeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCC-----------------------CEEEEEECCcEEEEehHHEEEcC
Confidence            445777777     77999999999999987554                       56666667778888888887765


Q ss_pred             CCC
Q psy9673         156 YLP  158 (162)
Q Consensus       156 ~~~  158 (162)
                      .+.
T Consensus        74 ~~~   76 (88)
T 1x2q_A           74 NIE   76 (88)
T ss_dssp             SCC
T ss_pred             CcC
Confidence            443

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.21  E-value=1.7e-11  Score=71.31  Aligned_cols=56  Identities=16%  Similarity=0.333  Sum_probs=42.3

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~  157 (162)
                      .++++|+     ..+|+|.+||+|.|+.+.+.                    .+++||.|+.+|+.|+||++||+.+.++
T Consensus         5 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~--------------------~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   64 (69)
T 1wyx_A            5 LAKALYDNVAESPDELSFRKGDIMTVLEQDTQ--------------------GLDGWWLCSLHGRQGIVPGNRLKILVGM   64 (69)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEETTGG--------------------GCTTEEEEEETTEEEEEEGGGEEEEEEE
T ss_pred             EEEECccCCcCCCCccCCcCCCEEEEeECCCC--------------------CCCCcEEEEECCcEEEechhhEEECCCC
Confidence            4566776     77999999999999988621                    1346777777888888888888887654


Q ss_pred             C
Q psy9673         158 P  158 (162)
Q Consensus       158 ~  158 (162)
                      +
T Consensus        65 ~   65 (69)
T 1wyx_A           65 Y   65 (69)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.21  E-value=1.8e-11  Score=69.65  Aligned_cols=50  Identities=28%  Similarity=0.557  Sum_probs=35.7

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|.+|++|.++.+.+++                       ||.|+.+|+.|+||++||+++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            7 ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKD-----------------------WWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSS-----------------------EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCCCCccCCCCCEEEEeEecCCC-----------------------eEEEEECCEEEEEEHHHEEEC
Confidence            44666766     679999999999999886654                       555555566666666666654

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.20  E-value=1.6e-11  Score=70.58  Aligned_cols=50  Identities=28%  Similarity=0.535  Sum_probs=35.9

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|.+||+|.++.+.+++                       ||.|+.+|+.|+||++||+.+
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------Ww~g~~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B           10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDDG-----------------------WWRGVCKGRYGLFPANYVELR   64 (65)
T ss_dssp             SCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSS-----------------------EEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEEEeeECCCCcCEeeEecCCEEEEEEecCCC-----------------------EEEEEECCcEEEEehHHeEEC
Confidence            34566666     678999999999999886654                       555555666666666666654

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.20  E-value=9.6e-12  Score=73.38  Aligned_cols=49  Identities=29%  Similarity=0.531  Sum_probs=36.2

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEec-CCCeEEEEecCCCCceeeeeEEe
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKI-DNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~-~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+. +.+||.|+.+|+.|+||++||++
T Consensus        10 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~   64 (74)
T 1gbq_A           10 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   64 (74)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEE
T ss_pred             eEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEE
Confidence            45677777     679999999999999886 44666666666666666666664

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.20  E-value=3.3e-11  Score=74.20  Aligned_cols=55  Identities=27%  Similarity=0.476  Sum_probs=42.4

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+.                     +++||.|+++|+.|+||++||+.+..
T Consensus         6 ~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~---------------------~~gWw~g~~~g~~G~~P~~yv~~~~~   64 (93)
T 1uff_A            6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVG---------------------EPGWLYGSFQGNFGWFPCNYVEKMPS   64 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCC---------------------SSSEEEEEETTEEEEEETTTEEECCS
T ss_pred             EEEEECccCCCCCCCCcCCCCCCEEEEeEccCC---------------------CCCEEEEEECCCEEEechHHeEEcCC
Confidence            34666776     77999999999999887421                     34678888888888888888888865


Q ss_pred             C
Q psy9673         157 L  157 (162)
Q Consensus       157 ~  157 (162)
                      .
T Consensus        65 ~   65 (93)
T 1uff_A           65 S   65 (93)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=2e-11  Score=70.75  Aligned_cols=52  Identities=19%  Similarity=0.356  Sum_probs=37.5

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+++                       ||.|+.+|+.|+||++||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2p_A            8 EEFVAIADYAATDETQLSFLRGEKILILRQTTAD-----------------------WWWGERAGCCGYIPANHVGKHSG   64 (68)
T ss_dssp             CEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSS-----------------------EEEEECTTCCEEEESSSEECCCC
T ss_pred             CEEEECceECCCCcCCcCCCCCCEEEEEEcCCCC-----------------------EEEEEECCeEEEEehHHeEECCC
Confidence            45667776     679999999999999986654                       55555556667777777766543

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.20  E-value=1.3e-11  Score=68.35  Aligned_cols=45  Identities=31%  Similarity=0.625  Sum_probs=29.5

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecC-CCeEEEEecCCCCceeeeeE
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKID-NNWFYGEVNGTTGAFPMSYV  128 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~-~~w~~g~~~~~~G~~P~~~v  128 (162)
                      ++++|+     ..+|+|.+||+|.|+.+.+ ++||.|+.+|+.|+||++||
T Consensus         3 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv   53 (54)
T 2a28_A            3 MEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYC   53 (54)
T ss_dssp             EEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGB
T ss_pred             EEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHc
Confidence            455555     6799999999999998865 45555554444444444443

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.20  E-value=1.9e-11  Score=69.62  Aligned_cols=33  Identities=15%  Similarity=0.342  Sum_probs=25.3

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE  115 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~  115 (162)
                      .++++|+     ..+|+|.+||+|.|..+.+++||.|+
T Consensus         5 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~   42 (62)
T 2fpe_A            5 THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAY   42 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEE
T ss_pred             EEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEE
Confidence            4566666     77999999999999888766655554

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.19  E-value=1.3e-12  Score=77.16  Aligned_cols=45  Identities=33%  Similarity=0.851  Sum_probs=39.7

Q ss_pred             CCCccccccccccccCCCEEcccCCc-cchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~H~-fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +++++.|+||++.+. +++.++|||. ||..|+.++      ..||+||..+.
T Consensus        21 ~~~~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~   66 (74)
T 4ic3_A           21 LQEEKLCKICMDRNI-AIVFVPCGHLVTCKQCAEAV------DKCPMCYTVIT   66 (74)
T ss_dssp             HHHHTBCTTTSSSBC-CEEEETTCCBCCCHHHHTTC------SBCTTTCCBCS
T ss_pred             CccCCCCCCCCCCCC-CEEEcCCCChhHHHHhhhcC------ccCCCcCcCcc
Confidence            356788999999999 8899999999 999999876      37999999886

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.19  E-value=2.7e-11  Score=70.23  Aligned_cols=53  Identities=32%  Similarity=0.629  Sum_probs=40.1

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+++.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~W~~g~~~g~~G~~P~~yv~~~~   63 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQ-----------------------NWYEGEHHGRVGIFPRTYIELLS   63 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCST-----------------------TEEEEECSSCEEEEETTTEEECC
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCC-----------------------CEEEEEECCCEEEEchHHEEECC
Confidence            345667776     67999999999999887554                       56666666788888888888775


Q ss_pred             C
Q psy9673         156 Y  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus        64 ~   64 (68)
T 2dl3_A           64 G   64 (68)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=2.6e-11  Score=70.72  Aligned_cols=55  Identities=16%  Similarity=0.286  Sum_probs=41.1

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+++..
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~~   65 (70)
T 2ega_A            9 EQYVVVSNYKKQENSELSLQAGEVVDVIEKNES-----------------------GWWFVSTSEEQGWVPATYLEAQNS   65 (70)
T ss_dssp             BCEECCSCCCCCSSSSCCCCTTCBCEEEEECTT-----------------------SEEEEECSSCEEEEEGGGCEESCC
T ss_pred             cEEEECceECCCCCCcccCCCCCEEEEEEccCC-----------------------CeEEEEECCCEEEEehHHcEECCC
Confidence            34566666     77999999999999988655                       556666667788888888887766


Q ss_pred             CCC
Q psy9673         157 LPI  159 (162)
Q Consensus       157 ~~~  159 (162)
                      .+.
T Consensus        66 ~~~   68 (70)
T 2ega_A           66 GPS   68 (70)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            554

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=2.5e-11  Score=70.38  Aligned_cols=52  Identities=29%  Similarity=0.494  Sum_probs=38.6

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+++.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 1x2k_A            7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDT-----------------------NWWKGTSKGRTGLIPSNYVAEQS   63 (68)
T ss_dssp             SEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCS-----------------------SEEEEESSSCEEEEETTTEEECC
T ss_pred             cEEEEECceECCCCCCcccCCCCCEEEEEEcCCC-----------------------CEEEEEECCcEEEEehHHeEEcC
Confidence            345667776     67999999999999988655                       45555566777777777777763

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.19  E-value=2.9e-11  Score=72.02  Aligned_cols=53  Identities=28%  Similarity=0.483  Sum_probs=39.9

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~   63 (78)
T 2yuo_A            7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDE-----------------------HCWVGELNGLRGWFPAKFVEVLD   63 (78)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSS-----------------------SEEEEEETTEEEEEEGGGEEEEC
T ss_pred             ceEEEECccCCCCCCCCccCCCCCEEEEEEecCC-----------------------CEEEEEECCCEEEEehHHEEECC
Confidence            345677777     67999999999999987655                       55666666777777777777765


Q ss_pred             C
Q psy9673         156 Y  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus        64 ~   64 (78)
T 2yuo_A           64 E   64 (78)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.18  E-value=6.2e-11  Score=71.55  Aligned_cols=49  Identities=24%  Similarity=0.457  Sum_probs=32.4

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe--cCCCCceeeeeEE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ  129 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~--~~~~G~~P~~~v~  129 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+++||.|+.  +|+.|+||++||+
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~   61 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVA   61 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEE
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeE
Confidence            345666776     779999999999999987666655554  3334444444443

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.18  E-value=2.8e-11  Score=70.38  Aligned_cols=50  Identities=24%  Similarity=0.499  Sum_probs=35.8

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE-CCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|.+||+|.++.+.+++||.|                       +. +|+.|+||++||+++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g-----------------------~~~~g~~G~~P~~yv~~~   62 (69)
T 4esr_A            7 PTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYG-----------------------SIGKGQEGYFPANHVASE   62 (69)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEE-----------------------EEETTEEEEEEGGGEEEH
T ss_pred             CEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEE-----------------------EeCCCCEEEEchHHeEEC
Confidence            45666766     7799999999999998876655554                       44 566666666666654

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.18  E-value=2.5e-11  Score=73.06  Aligned_cols=54  Identities=24%  Similarity=0.421  Sum_probs=40.5

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+++.
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~-----------------------gWw~g~~~g~~G~~P~~yv~~~~   73 (83)
T 1neg_A           17 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNK-----------------------DWWKVEVNDRQGFVPAAYVKKLA   73 (83)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSS-----------------------SEEEEEETTEEEEEEGGGEEECC
T ss_pred             ceEEEEccccCCCCCCccccCCCCEEEEEEecCC-----------------------CEEEEEECCeEEEEEHHHEEECC
Confidence            445677777     68999999999999988655                       45666666777777777777764


Q ss_pred             CC
Q psy9673         156 YL  157 (162)
Q Consensus       156 ~~  157 (162)
                      ..
T Consensus        74 ~~   75 (83)
T 1neg_A           74 AA   75 (83)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.18  E-value=3e-11  Score=70.79  Aligned_cols=51  Identities=22%  Similarity=0.526  Sum_probs=37.5

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|.+||+|.++.+.+++                       ||.|+.+|+.|+||++||+.+.
T Consensus        14 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------W~~g~~~g~~G~~P~~yv~~~~   69 (72)
T 4glm_A           14 TYGVALYRFQALEPNELDFEVGDKIRILATLEDG-----------------------WLEGSLKGRTGIFPYRFVKLCP   69 (72)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTT-----------------------EEEEEETTEEEEEEGGGEEEEC
T ss_pred             eEEEECccCCCCCCCcCCCCCCCEEEEEEccCCC-----------------------EEEEEECCcEEEEChHHeEECC
Confidence            44666666     779999999999999886654                       5556666777777777777654

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=2.9e-11  Score=72.02  Aligned_cols=52  Identities=29%  Similarity=0.543  Sum_probs=40.9

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+.+..
T Consensus        18 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~-----------------------gWw~g~~~g~~G~~P~~yv~~~~~   74 (78)
T 2ed0_A           18 EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDD-----------------------GWYEGVMNGVTGLFPGNYVESISG   74 (78)
T ss_dssp             EEEEECSCBCCSSTTBCCBCSSCEEEEEEECSS-----------------------SEEEEEETTEEEEEETTSEEECSS
T ss_pred             EEEEECccCCccCcCcccccCCCEEEEEEeCCC-----------------------CEEEEEECCcEEEeChHHEEEcCC
Confidence            35677777     67999999999999988554                       566777778888888888888754

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.18  E-value=1.5e-11  Score=72.40  Aligned_cols=45  Identities=29%  Similarity=0.433  Sum_probs=33.4

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~  157 (162)
                      ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+++.+.
T Consensus        13 ~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~~~   57 (73)
T 2kxd_A           13 GREVTMKKGDILTLLNSTNK-----------------------DWWKVEVNDRQGFVPAAYVKKLDSG   57 (73)
T ss_dssp             SCCCCBCTTCEEEEEECCSS-----------------------SEEEEEETTEEEEEEGGGEEECCSS
T ss_pred             CCEeeEcCCCEEEEEEecCC-----------------------CEEEEEECCCEEEEehHHeEEcCCC
Confidence            67899999999999988665                       4555555666777777777766544

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=3.3e-11  Score=72.30  Aligned_cols=53  Identities=21%  Similarity=0.507  Sum_probs=39.0

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|.|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+.+.
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~   66 (81)
T 2ysq_A           10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNK-----------------------DWWWGQIDDEEGWFPASFVRLWV   66 (81)
T ss_dssp             CEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSS-----------------------SEEEEECSSCEEEEEGGGEEESS
T ss_pred             ceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCc-----------------------CEEEEEECCCEEEechHHEEEcC
Confidence            455777777     67899999999999988665                       45555566677777777777664


Q ss_pred             C
Q psy9673         156 Y  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus        67 ~   67 (81)
T 2ysq_A           67 N   67 (81)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.17  E-value=3.7e-11  Score=67.38  Aligned_cols=40  Identities=25%  Similarity=0.556  Sum_probs=30.2

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEec--CCCCceeeeeEE
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVN--GTTGAFPMSYVQ  129 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~--~~~G~~P~~~v~  129 (162)
                      ..+|+|.+||+|.|+.+.+++||.|+..  |+.|+||++||+
T Consensus        15 ~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~   56 (58)
T 1zuy_A           15 PSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK   56 (58)
T ss_dssp             TTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEE
T ss_pred             CCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEE
Confidence            5789999999999999977777777655  555555555554

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.8e-11  Score=74.09  Aligned_cols=53  Identities=23%  Similarity=0.469  Sum_probs=39.0

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+..                     .+++||.|+++|+.|+||++||+++.
T Consensus         9 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~---------------------~~~~Ww~g~~~g~~G~fP~~yv~~~~   66 (85)
T 2dlp_A            9 GYVIALRSYITDNCSLLSFHRGDLIKLLPVAT---------------------LEPGWQFGSAGGRSGLFPADIVQPAA   66 (85)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEECCCSC---------------------CCTTEEEEESSSCEEEEETTSEEECC
T ss_pred             EEEEECCCCCccCcCCccCcCCCEEEEEEccC---------------------CCCCeEEEEECCEEEEechHHeEECC
Confidence            45677777     7799999999999988711                     13456667777777888888887764

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.17  E-value=1.6e-11  Score=68.91  Aligned_cols=46  Identities=17%  Similarity=0.335  Sum_probs=32.0

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecC-CCeEEEEe--cCCCCceeeeeEE
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKID-NNWFYGEV--NGTTGAFPMSYVQ  129 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~-~~w~~g~~--~~~~G~~P~~~v~  129 (162)
                      ++++|+     ..+|+|.+||+|.++.+.+ ++||.|+.  +|+.|+||++||+
T Consensus         4 ~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            4 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            455666     6799999999999998876 56666665  4555555555554

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.17  E-value=2.3e-11  Score=70.32  Aligned_cols=49  Identities=22%  Similarity=0.409  Sum_probs=38.1

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEE-ECCeEEeecCCCeEec
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE-VNGTTGAFPMSYVQFV  154 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~-~~g~~g~~p~~~~~~~  154 (162)
                      .++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+ .+|+.|+||++||+++
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDL-----------------------HWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSS-----------------------SEEEEECSSSCEEEEETTSEESS
T ss_pred             EEEECccCCCCCCCeecCCcCCEEEEEEccCC-----------------------CcEEEEECCCCEEEEEhHhEEEc
Confidence            4566666     67999999999999998665                       455555 3678888888888887

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.17  E-value=2.8e-11  Score=69.49  Aligned_cols=51  Identities=22%  Similarity=0.513  Sum_probs=37.5

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|.+||+|.+..+.++                       +||.|+.+|+.|+||++||+.+.
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            8 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEE-----------------------GWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEET-----------------------TEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCC-----------------------CEEEEEECCCEEEeehHHEEECc
Confidence            34666776     67899999999999887554                       45666666777777777777653

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.16  E-value=4.7e-11  Score=70.17  Aligned_cols=55  Identities=33%  Similarity=0.553  Sum_probs=40.6

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+..                     .+++||.|+.+|+.|+||++||+.+.
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---------------------~~~~W~~g~~~g~~G~~P~~yv~~~~   67 (73)
T 2k9g_A            9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDC---------------------IDVGWWEGELNGRRGVFPDNFVKLLP   67 (73)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEECCS---------------------SSTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             ccEEEECccCCCCCCCeeeECCCCEEEEEECCC---------------------CCCCEEEEEECCeEEEEchHHEEECC
Confidence            345677777     7799999999999998741                     13466777777788888888887764


Q ss_pred             C
Q psy9673         156 Y  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus        68 ~   68 (73)
T 2k9g_A           68 P   68 (73)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=3.3e-11  Score=70.43  Aligned_cols=57  Identities=18%  Similarity=0.268  Sum_probs=43.0

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+.                    .+++||.|+.+|+.|+||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~--------------------~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVP--------------------ESEGWWKCLLHGRQGLAPANRLQILS   66 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCT--------------------TSTTEEEEESSSCCEEEETTTEEECC
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCC--------------------CCCCcEEEEECCCEEEEehHHEEECC
Confidence            345677777     77999999999999988511                    13467777777888888888888876


Q ss_pred             CC
Q psy9673         156 YL  157 (162)
Q Consensus       156 ~~  157 (162)
                      ..
T Consensus        67 ~~   68 (71)
T 2cre_A           67 GP   68 (71)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.16  E-value=3.9e-11  Score=69.94  Aligned_cols=55  Identities=33%  Similarity=0.548  Sum_probs=40.3

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+..                     .+++||.|+.+|+.|+||++||+++.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---------------------~~~~W~~g~~~g~~G~~P~~yv~~~~   65 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDC---------------------IDVGWWEGELNGRRGVFPDNFVKLLS   65 (70)
T ss_dssp             SEEEEECSCCCCSSTTBCCCCTTEEEEEEECCC---------------------SSTTEEEEECSSCEEEEEGGGEEECC
T ss_pred             CcEEEECcCCCCCCcCEeeEcCCCEEEEEECCC---------------------CCCCeEEEEECCcEEEechHHeEECC
Confidence            345677777     7799999999999998741                     13456666667777888888887765


Q ss_pred             C
Q psy9673         156 Y  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus        66 ~   66 (70)
T 2da9_A           66 G   66 (70)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.16  E-value=5.2e-11  Score=67.25  Aligned_cols=46  Identities=17%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEec-CCCeEEEEe--cCCCCceeeeeE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKI-DNNWFYGEV--NGTTGAFPMSYV  128 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~-~~~w~~g~~--~~~~G~~P~~~v  128 (162)
                      .++++|+     ..+|+|.+||+|.++.+. +++||.|+.  +|+.|+||++||
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv   57 (60)
T 2v1q_A            4 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI   57 (60)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGE
T ss_pred             EEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHE
Confidence            4566666     779999999999999873 555555554  333344444433

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.16  E-value=2e-11  Score=71.05  Aligned_cols=53  Identities=25%  Similarity=0.451  Sum_probs=38.5

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+ ++                       +||.|+.+|+.|+||++||+++..
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~~   64 (69)
T 1uhf_A            9 EEYIALYPYSSVEPGDLTFTEGEEILVTQK-DG-----------------------EWWTGSIGDRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             EEEECSSCBCCSSSSBCCBCTTCEEEECEE-ET-----------------------TEEEECSTTCCEEECGGGCEECCC
T ss_pred             CEEEEeeeECCCCcCccCCCCCCEEEEEEe-CC-----------------------CEEEEEeCCcEEEEchHHeEECCC
Confidence            44566666     77999999999998887 44                       455555567777777777777765


Q ss_pred             CC
Q psy9673         157 LP  158 (162)
Q Consensus       157 ~~  158 (162)
                      ..
T Consensus        65 ~~   66 (69)
T 1uhf_A           65 GP   66 (69)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=1.8e-10  Score=68.02  Aligned_cols=59  Identities=14%  Similarity=0.183  Sum_probs=41.7

Q ss_pred             eeEeeeec----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673          82 SFIRFFLN----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus        82 ~~~~~~~~----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~  157 (162)
                      ..++++|+    ..+|+|++||+|.|+.+.+++||.++.....                   +|+.|+||++||+++...
T Consensus        11 ~~~~alydy~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~-------------------~g~~G~~P~~yv~~~~~~   71 (75)
T 2egc_A           11 DVYVSIADYEGDEETAGFQEGVSMEVLERNPNGWWYCQILDGV-------------------KPFKGWVPSNYLEKKNSG   71 (75)
T ss_dssp             EEEEECSCBCCCSSSCCBCTTCEEEECEECTTSEEEEEECCSS-------------------SCEEEEEEGGGEEECCSC
T ss_pred             eEEEECCCcCCCCCcCCCCCCCEEEEEEcCCCCeEEEEeCCCC-------------------CCcEEEEehHHCEECCCC
Confidence            44566666    5689999999999999876655555432110                   368888888888888766


Q ss_pred             CC
Q psy9673         158 PI  159 (162)
Q Consensus       158 ~~  159 (162)
                      |.
T Consensus        72 ~~   73 (75)
T 2egc_A           72 PS   73 (75)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.15  E-value=4.2e-11  Score=70.35  Aligned_cols=54  Identities=24%  Similarity=0.415  Sum_probs=39.1

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.++.+.++                       +||.|+.+|+.|+||++||+.+.+
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~~   62 (73)
T 3thk_A            6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNK-----------------------DWWKVEVNDRQGFVPAAYVKKLDP   62 (73)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCSS-----------------------SEEEEEETTEEEEEEGGGEEECCC
T ss_pred             EEEEECcCCCcCCCCccCCCCCCEEEEEECCCC-----------------------CeEEEEECCcEEEEehHHeEECCC
Confidence            45667776     77999999999999988655                       456666667777777777777655


Q ss_pred             CC
Q psy9673         157 LP  158 (162)
Q Consensus       157 ~~  158 (162)
                      .+
T Consensus        63 ~~   64 (73)
T 3thk_A           63 AQ   64 (73)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.15  E-value=4.3e-11  Score=70.35  Aligned_cols=54  Identities=20%  Similarity=0.332  Sum_probs=40.0

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEEC--CeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVN--GTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~--g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+++                       ||.|+..  |+.|+||++||+.+
T Consensus         6 ~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~g-----------------------Ww~g~~~~~g~~G~~P~~yv~~~   62 (73)
T 2lcs_A            6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQG-----------------------WLVAENESGSKTGLVPEEFVSYI   62 (73)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTT-----------------------EEEEECTTSSCEEEEESTTEEEC
T ss_pred             CEEEECccCCCCCCCccCCcCCCEEEEEEEcCCC-----------------------EEEEEECCCCCEEEeeHHHEEEC
Confidence            45667776     779999999999998886654                       5555553  77888888888877


Q ss_pred             cCCC
Q psy9673         155 WYLP  158 (162)
Q Consensus       155 ~~~~  158 (162)
                      ..-+
T Consensus        63 ~~~~   66 (73)
T 2lcs_A           63 QPEL   66 (73)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            5543

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.15  E-value=7.1e-11  Score=68.99  Aligned_cols=55  Identities=16%  Similarity=0.271  Sum_probs=42.0

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEec-CCCeEEEEecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKI-DNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQ  152 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~-~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~  152 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+. ++                       +||.|+.  +|+.|+||++||+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------~Ww~g~~~~~g~~G~~P~~yv~   62 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSK-----------------------DWWMCQLVDSGKSGLVPAQFIE   62 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCS-----------------------SEEEEEETTTCCEEEEEGGGEE
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCC-----------------------CCEEEEECCCCCeEEechHHeE
Confidence            345677777     778999999999999875 43                       5666666  6888888888888


Q ss_pred             eccCCC
Q psy9673         153 FVWYLP  158 (162)
Q Consensus       153 ~~~~~~  158 (162)
                      ++.+..
T Consensus        63 ~~~~~~   68 (71)
T 2jt4_A           63 PVRDKK   68 (71)
T ss_dssp             ETTTSS
T ss_pred             ECCCcC
Confidence            876544

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.15  E-value=6.1e-11  Score=68.50  Aligned_cols=53  Identities=28%  Similarity=0.663  Sum_probs=37.3

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|.+||+|.|..+.+++||.|+..+                     .|+.|+||++||+.+.
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~---------------------~g~~G~~P~~yv~~~~   64 (67)
T 2o9s_A            7 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPG---------------------TSRQGIFPITYVDVIK   64 (67)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTT---------------------SSCEEEEEGGGEEEEE
T ss_pred             EEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECC---------------------CCCEEEEChHHeEECC
Confidence            35667776     77999999999999988666555555433                     0366777777776653

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.15  E-value=3.7e-11  Score=70.25  Aligned_cols=53  Identities=21%  Similarity=0.349  Sum_probs=38.4

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEE--ECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE--VNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~--~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|.+||+|.|..+.+++                       ||.|+  .+|+.|+||++||+++
T Consensus         7 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~g-----------------------W~~g~~~~~g~~G~fP~~yv~~~   63 (71)
T 2fpf_A            7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDY-----------------------WYEAYNMRTGARGVFPAYYAIEV   63 (71)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTS-----------------------EEEEEETTTTEEEEEEGGGEEEC
T ss_pred             eEEEECeeECccCCCcccCcCCcEEEEeEecCCC-----------------------EEEEEECCCCCEEEeehHHEEEC
Confidence            34666776     779999999999998876654                       55555  4678888888888877


Q ss_pred             cCC
Q psy9673         155 WYL  157 (162)
Q Consensus       155 ~~~  157 (162)
                      ...
T Consensus        64 ~~~   66 (71)
T 2fpf_A           64 TKE   66 (71)
T ss_dssp             C--
T ss_pred             CCC
Confidence            543

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.15  E-value=3.9e-11  Score=68.89  Aligned_cols=35  Identities=23%  Similarity=0.477  Sum_probs=26.7

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEec
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVN  117 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~  117 (162)
                      .++++|+     ..+|+|.+||+|.|+.+.+++||.|+..
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~   42 (65)
T 2oaw_A            3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVK   42 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEE
T ss_pred             EEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEc
Confidence            4566666     7799999999999999877666666543

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.14  E-value=1.6e-11  Score=71.22  Aligned_cols=53  Identities=23%  Similarity=0.441  Sum_probs=38.5

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+++..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wi7_A            8 RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEE-----------------------GWWEGVLNGKTGMFPSNFIKELSG   64 (68)
T ss_dssp             CCEEESSCBCCSSTTBCCBCTTCEECCCEEEET-----------------------TEEEECSTTCCEEEETTSEEECCS
T ss_pred             CEEEECccCCcCCCCCccCcCCCEEEEEEcCCC-----------------------CeEEEEECCcEEEEchHHEEECCC
Confidence            34666766     67999999999988877554                       556666667777777777777654


Q ss_pred             C
Q psy9673         157 L  157 (162)
Q Consensus       157 ~  157 (162)
                      .
T Consensus        65 ~   65 (68)
T 1wi7_A           65 P   65 (68)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.14  E-value=4.6e-11  Score=72.84  Aligned_cols=49  Identities=24%  Similarity=0.527  Sum_probs=33.7

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEec-----CCCeEEEEe-cCCCCceeeeeEE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKI-----DNNWFYGEV-NGTTGAFPMSYVQ  129 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~-----~~~w~~g~~-~~~~G~~P~~~v~  129 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.     +++||.|+. +|+.|+||++||+
T Consensus        29 ~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~   88 (89)
T 2rf0_A           29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA   88 (89)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEE
T ss_pred             CcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCc
Confidence            456778887     779999999999999985     555555554 4444444444443

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.14  E-value=4.4e-11  Score=69.92  Aligned_cols=52  Identities=29%  Similarity=0.349  Sum_probs=35.9

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeE-ecCCCeEEEEecCCCCceeeeeEEecCCeEEEE-ECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRR-KIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE-VNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~-~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~-~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|.+||+|.|+. ..++                       +||.|+ .+|+.|+||++||++.
T Consensus        12 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------~Ww~g~~~~g~~G~~P~~yv~~~   68 (71)
T 1csk_A           12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDP-----------------------NWYKAKNKVGREGIIPANYVQKR   68 (71)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEECSST-----------------------TEEEEECTTSCEEEEETTSEEC-
T ss_pred             CEEEEceeECcCCCCcCCCCCCCEEEEeECCCCC-----------------------CCEEEEeCCCCEEEEehHHeEEc
Confidence            45677777     7799999999999988 4454                       455555 4577777777777765


Q ss_pred             cC
Q psy9673         155 WY  156 (162)
Q Consensus       155 ~~  156 (162)
                      ..
T Consensus        69 ~~   70 (71)
T 1csk_A           69 EG   70 (71)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.14  E-value=4.6e-11  Score=67.74  Aligned_cols=50  Identities=26%  Similarity=0.504  Sum_probs=35.6

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEE-eecCCCeEecc
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTG-AFPMSYVQFVW  155 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g-~~p~~~~~~~~  155 (162)
                      .++++|+     ..+|+|.+||+|.++.+.+++                       ||.|+.+|+.| +||++||+++.
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            5 AVKALFDYKAQREDELTFTKSAIIQNVEKQDGG-----------------------WWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSS-----------------------EEEEEETTEEEEEEEGGGEEECC
T ss_pred             EEEECcCCCcCCCCCcCCcCCCEEEEEEecCCC-----------------------EEEEEECCeEEEEEChHHcEECC
Confidence            3566666     679999999999999886654                       55555556654 77777776653

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-10  Score=68.18  Aligned_cols=54  Identities=19%  Similarity=0.250  Sum_probs=41.6

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE-CCeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+ ++                       +||.|+. +|+.|+||++||+++.
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~-----------------------~Ww~g~~~~g~~G~~P~~yv~~~~   63 (72)
T 2jw4_A            8 VVVVAKFDYVAQQEQELDIKKNERLWLLDD-SK-----------------------SWWRVRNSMNKTGFVPSNYVERKN   63 (72)
T ss_dssp             EEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SS-----------------------SSEEEECTTSCEEEECTTSCEECC
T ss_pred             eEEEECcCCCcCCCCcccCCCCCEEEEEEC-CC-----------------------CEEEEEECCCCEEEEEhhHEEEcC
Confidence            35667776     77999999999999886 33                       5666664 6888999999998887


Q ss_pred             CCCC
Q psy9673         156 YLPI  159 (162)
Q Consensus       156 ~~~~  159 (162)
                      .++.
T Consensus        64 ~~~~   67 (72)
T 2jw4_A           64 SARA   67 (72)
T ss_dssp             CCCS
T ss_pred             CCcc
Confidence            6654

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.14  E-value=8.9e-11  Score=69.16  Aligned_cols=47  Identities=38%  Similarity=0.702  Sum_probs=31.0

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ  129 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~  129 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+ +++||.|+.+|+.|+||++||+
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~   62 (74)
T 1j3t_A           11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVK   62 (74)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEE
T ss_pred             eEEEECCCCCCCCCCccCCCCCCEEEEEec-CCCEEEEEECCcEEEEchHHeE
Confidence            45677776     67899999999999888 3455555544444444444443

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.9e-10  Score=71.26  Aligned_cols=43  Identities=23%  Similarity=0.417  Sum_probs=34.9

Q ss_pred             eeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        92 el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      +|.|.+||+|.|+.+.+.                      ++||.|+.+|+.|+||++||+.+..
T Consensus        41 eLsf~~Gd~i~vl~~~~~----------------------~gWw~g~~~g~~G~~P~~yv~~~~~   83 (97)
T 2csq_A           41 ELPFKEGQIIKVYGDKDA----------------------DGFYRGETCARLGLIPCNMVSEIQA   83 (97)
T ss_dssp             BCCBCTTCEEEEEEEECT----------------------TCEEEEEETTEEEEEETTTSEECCC
T ss_pred             ccCCCCCCEEEEEEecCC----------------------CCeEEEEECCcEEEEehHHeEECCC
Confidence            899999999999876432                      3577788888999999999998854

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.13  E-value=2.7e-11  Score=70.30  Aligned_cols=54  Identities=26%  Similarity=0.577  Sum_probs=39.7

Q ss_pred             eEeeeec-----cc-eeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE-CCeEEeecCCCeEec
Q psy9673          83 FIRFFLN-----IL-DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPMSYVQFV  154 (162)
Q Consensus        83 ~~~~~~~-----~~-el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~~~~~~~  154 (162)
                      .++++|+     .. +|+|++||+|.|+.+.+.                  .+.+++||.|+. +|+.|+||++||+.+
T Consensus         9 ~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~------------------~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            9 FARALYDFVPENPEMEVALKKGDLMAILSKKDP------------------LGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSS------------------SCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             EEEEEecccCCCCCCccCCCCCCEEEEEecCCC------------------CCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            4566776     56 999999999999988652                  001346777777 688888888888764

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.13  E-value=5.8e-11  Score=66.82  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=25.6

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV  116 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~  116 (162)
                      .++++|+     ..+|+|.+||+|.++.+.+++||.|+.
T Consensus         3 ~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~   41 (59)
T 1yn8_A            3 RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAEN   41 (59)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEC
T ss_pred             EEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEE
Confidence            4566666     679999999999998886665555554

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=1.2e-10  Score=69.24  Aligned_cols=56  Identities=16%  Similarity=0.255  Sum_probs=42.7

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEEC-CeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVN-GTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~-g~~g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|++||+|.|+.+.+                      +++||.|+.. |+.|+||++||+.+.
T Consensus        14 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~----------------------~~~Ww~g~~~~g~~G~~P~~yv~~~~   71 (78)
T 2dl5_A           14 LTCKVVYSYKASQPDELTIEEHEVLEVIEDGD----------------------MEDWVKARNKVGQVGYVPEKYLQFPT   71 (78)
T ss_dssp             EEEEECSCBCCCSTTBCCBCSSEEEEEEECCS----------------------SSSEEEEECTTCCEEEEETTTSCCSC
T ss_pred             cEEEEceeECCCCCCCCCCCCCCEEEEEeccC----------------------CCCcEEEEeCCCCEEEEEhHHEEECC
Confidence            45677777     6799999999999998864                      1356666665 888888888888886


Q ss_pred             CCCC
Q psy9673         156 YLPI  159 (162)
Q Consensus       156 ~~~~  159 (162)
                      ..++
T Consensus        72 ~~~~   75 (78)
T 2dl5_A           72 SSGP   75 (78)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            5554

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.13  E-value=8.3e-12  Score=81.59  Aligned_cols=48  Identities=27%  Similarity=0.836  Sum_probs=42.4

Q ss_pred             CCccccccccccccCCC-------EEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSS-------KVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p-------~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .+.+.|+||++.+. .+       +.++|||.||..|+.+|+....  .||+||..+.
T Consensus        70 ~~~~~C~iC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~  124 (133)
T 4ap4_A           70 SGTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKIN  124 (133)
T ss_dssp             SSSCBCTTTCCBHH-HHHHTTCCEEEETTSBEEEHHHHHHHHHHCS--BCTTTCCBCC
T ss_pred             CCCCCCCCCCCccc-cccccCcceEeCCCCChhhHHHHHHHHHcCC--CCCCCCCcCC
Confidence            56788999999997 44       8889999999999999998665  8999999886

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.13  E-value=6.6e-11  Score=70.62  Aligned_cols=52  Identities=23%  Similarity=0.403  Sum_probs=35.6

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEecc
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFVW  155 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~~  155 (162)
                      .++++|+     ..+|+|.+||+|.|+.+.+++|                       |.|+.  +|+.|+||++||+++.
T Consensus         7 ~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~W-----------------------w~g~~~~~g~~G~~P~~yv~~~~   63 (79)
T 3cqt_A            7 LFEALYDYEARTEDDLSFHKGEKFQILNSSEGDW-----------------------WEARSLTTGETGYIPSIYLAPVD   63 (79)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSE-----------------------EEEEETTTCCEEEEEGGGEEEC-
T ss_pred             EEEECccCCCCCcCcCCCCCCCEEEEEEecCCCe-----------------------EEEEECCCCCEEEeehHHeEECC
Confidence            4566666     6799999999999998866555                       45555  5666777777776665


Q ss_pred             CC
Q psy9673         156 YL  157 (162)
Q Consensus       156 ~~  157 (162)
                      .+
T Consensus        64 ~~   65 (79)
T 3cqt_A           64 RL   65 (79)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.12  E-value=6.6e-11  Score=67.65  Aligned_cols=34  Identities=26%  Similarity=0.620  Sum_probs=25.0

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV  116 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~  116 (162)
                      .++++|+     ..+|+|.+||+|.++.+.+++||.|+.
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~   46 (64)
T 4f14_A            8 TYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTV   46 (64)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEE
T ss_pred             EEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEE
Confidence            3556666     678999999999998886665555443

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=5.4e-11  Score=70.99  Aligned_cols=52  Identities=33%  Similarity=0.673  Sum_probs=38.6

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|.|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~~   64 (79)
T 2yun_A            8 RLCKALYSFQARQDDELNLEKGDIVIIHEKKEE-----------------------GWWFGSLNGKKGHFPAAYVEELPS   64 (79)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSS-----------------------SCEEEESSSCEEEECSTTEEEESS
T ss_pred             CEEEECccCCcCCCCCcCCCCCCEEEEEEcCCC-----------------------CEEEEEECCCEEEEEhHHeEECCC
Confidence            45667776     67999999999999888655                       455566667777777777777643

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.12  E-value=4.4e-11  Score=69.51  Aligned_cols=52  Identities=23%  Similarity=0.328  Sum_probs=38.7

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+.+..
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~~   65 (69)
T 2dil_A            9 QEYRALYDYTAQNPDELDLSAGDILEVILEGED-----------------------GWWTVERNGQRGFVPGSYLEKLSG   65 (69)
T ss_dssp             CEEECCSCBCCSSSSSCCBCTTCEEEEEECCSS-----------------------SEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             cEEEECccCCccCcCccCCCCCCEEEEEECCCC-----------------------CEEEEEECCCEEEEehHHeEEcCC
Confidence            34566666     67999999999999988554                       566666667777777777776643

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.12  E-value=2.4e-11  Score=71.26  Aligned_cols=53  Identities=23%  Similarity=0.404  Sum_probs=38.8

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+..                      +++||.|+.+|+.|+||++||+.+..
T Consensus        11 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~----------------------~~~Ww~g~~~g~~G~~P~~yv~~~~~   68 (72)
T 1ugv_A           11 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQ----------------------EPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEBSCCBCS----------------------STTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             cEEEEccccCCcCCCEeCCcCCCEEEEEEecC----------------------CCCeEEEEECCcEEEecHHHEEECCC
Confidence            45667776     7799999999998776422                      23566677777888888888887754

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.12  E-value=9.2e-11  Score=68.88  Aligned_cols=47  Identities=23%  Similarity=0.495  Sum_probs=31.3

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe--cCCCCceeeeeE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYV  128 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~--~~~~G~~P~~~v  128 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+++||.|+.  +|+.|+||++||
T Consensus        16 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv   69 (73)
T 3h0h_A           16 TLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV   69 (73)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGE
T ss_pred             EEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHe
Confidence            44566766     779999999999999887665555554  333344444333

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.11  E-value=8.9e-11  Score=67.39  Aligned_cols=32  Identities=22%  Similarity=0.619  Sum_probs=23.9

Q ss_pred             Eeeeec------cceeeccCCCEEEEeEecCCCeEEEE
Q psy9673          84 IRFFLN------ILDLNFKKDDIVILRRKIDNNWFYGE  115 (162)
Q Consensus        84 ~~~~~~------~~el~~~~gd~i~v~~~~~~~w~~g~  115 (162)
                      ++++|+      ..+|+|.+||+|.|..+.+++||.|+
T Consensus         8 ~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~   45 (65)
T 2j05_A            8 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVT   45 (65)
T ss_dssp             EEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEE
T ss_pred             EEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEE
Confidence            455555      46899999999999988666555555

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=9.8e-11  Score=69.34  Aligned_cols=44  Identities=32%  Similarity=0.644  Sum_probs=33.9

Q ss_pred             ceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          91 LDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        91 ~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      .+|+|.+||+|.|+.+.+.                      ++||.|+++|+.|+||++||+++..
T Consensus        29 ~eLsf~~Gd~i~v~~~~~~----------------------~gWw~g~~~g~~G~~P~~yv~~~~~   72 (76)
T 2csi_A           29 AELTFCTGDIITVFGEIDE----------------------DGFYYGELNGQKGLVPSNFLEEVSG   72 (76)
T ss_dssp             TSCCCCTTCEEEEESSCCS----------------------SSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CcccCCCCCEEEEeEecCC----------------------CCeEEEEECCcEEEEehHHEEECCC
Confidence            4899999999999987553                      2567777778888888888887643

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.11  E-value=3.7e-11  Score=75.55  Aligned_cols=48  Identities=19%  Similarity=0.412  Sum_probs=39.7

Q ss_pred             CccccccccccccCC-----------------CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTS-----------------SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~-----------------p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ++..|+||++.|...                 .+.++|+|.||..||.+|+..+.  .||+||+.+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ--VCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS--BCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC--cCcCCCCcce
Confidence            456799999998732                 25579999999999999998654  8999999864

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=5.6e-11  Score=72.70  Aligned_cols=52  Identities=33%  Similarity=0.621  Sum_probs=37.2

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEEC--CeEEeecCCCeEe
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVN--GTTGAFPMSYVQF  153 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~--g~~g~~p~~~~~~  153 (162)
                      ...++++|+     ..+|.|.+||+|.|+.+.+++||.                       |+..  |+.|+||++||+.
T Consensus        17 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~-----------------------g~~~~~g~~G~fP~~yv~~   73 (90)
T 2yup_A           17 YGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYE-----------------------GRITGTGRQGIFPASYVQV   73 (90)
T ss_dssp             SEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEE-----------------------EECTTTCCEEEEEGGGEEE
T ss_pred             ceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEE-----------------------EEECCCCCEEEEehHHeEE
Confidence            345677777     778999999999999886655554                       5543  6666666666666


Q ss_pred             cc
Q psy9673         154 VW  155 (162)
Q Consensus       154 ~~  155 (162)
                      +.
T Consensus        74 ~~   75 (90)
T 2yup_A           74 SR   75 (90)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.11  E-value=1.7e-11  Score=76.20  Aligned_cols=28  Identities=43%  Similarity=0.882  Sum_probs=20.8

Q ss_pred             cCCeEEEEECCeEEeecCCCeEeccCCC
Q psy9673         131 DNNWFYGEVNGTTGAFPMSYVQFVWYLP  158 (162)
Q Consensus       131 ~~~w~~g~~~g~~g~~p~~~~~~~~~~~  158 (162)
                      +++||.|+.+|+.|+||++||+.+.+..
T Consensus        66 ~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   93 (98)
T 1udl_A           66 DPDWWQGEINGVTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             SSSEEBCBSSSCBCCEETTSEEECCCCS
T ss_pred             CCCEEEEEECCcEEEEehHHeEEcCCCC
Confidence            4577777777888888888888775543

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.11  E-value=7.7e-11  Score=74.33  Aligned_cols=37  Identities=16%  Similarity=0.285  Sum_probs=26.6

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEec-CCC--eEEEEec
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKI-DNN--WFYGEVN  117 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~-~~~--w~~g~~~  117 (162)
                      ...++++|+     ..+|+|++||+|.|+.+. +++  ||.|+++
T Consensus        22 ~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~   66 (108)
T 1i1j_A           22 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQ   66 (108)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEB
T ss_pred             eeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEEC
Confidence            345777887     789999999999999883 222  5555544

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.11  E-value=4.5e-11  Score=69.05  Aligned_cols=51  Identities=27%  Similarity=0.554  Sum_probs=34.1

Q ss_pred             eeeEeeeec-----cce-eeccCCCEEEEeEe-cCCCeEEEEecCCCCceeeeeEEecCCeEEEE--ECCeEEeecCCCe
Q psy9673          81 VSFIRFFLN-----ILD-LNFKKDDIVILRRK-IDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE--VNGTTGAFPMSYV  151 (162)
Q Consensus        81 ~~~~~~~~~-----~~e-l~~~~gd~i~v~~~-~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~--~~g~~g~~p~~~~  151 (162)
                      ...++++|+     ..+ |+|.+||+|.|+.. .++                       +||.|+  .+|++|+||++||
T Consensus         7 ~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~-----------------------gW~~g~~~~~g~~G~fP~~yv   63 (67)
T 3rnj_A            7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARD-----------------------GWHYGESEKTKMRGWFPFSYT   63 (67)
T ss_dssp             CCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBT-----------------------TEEEEEETTTCCEEEEEGGGE
T ss_pred             CeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCC-----------------------CCEEEEECCCCCEEEEEHHHe
Confidence            345677777     244 99999999998854 344                       455555  3566677777776


Q ss_pred             Eec
Q psy9673         152 QFV  154 (162)
Q Consensus       152 ~~~  154 (162)
                      +++
T Consensus        64 ~~l   66 (67)
T 3rnj_A           64 RVL   66 (67)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            664

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=6.1e-11  Score=70.78  Aligned_cols=52  Identities=23%  Similarity=0.611  Sum_probs=38.3

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEe
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQF  153 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~  153 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+ +++                       ||.|+.  +|+.|+||++||++
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~g-----------------------W~~g~~~~~g~~G~fP~~yv~~   72 (79)
T 1x6b_A           17 LPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDG-----------------------WLYGERLRDGETGWFPEDFARF   72 (79)
T ss_dssp             CCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETT-----------------------EEEEEETTTCCEEEECGGGCEE
T ss_pred             CCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCC-----------------------EEEEEECCCCCEEEEchHHEEE
Confidence            456777777     67999999999999888 654                       555555  56777777777776


Q ss_pred             ccC
Q psy9673         154 VWY  156 (162)
Q Consensus       154 ~~~  156 (162)
                      +..
T Consensus        73 ~~~   75 (79)
T 1x6b_A           73 ISG   75 (79)
T ss_dssp             EES
T ss_pred             CCC
Confidence            643

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=5.9e-11  Score=71.01  Aligned_cols=55  Identities=29%  Similarity=0.482  Sum_probs=41.8

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|.|.+||+|.|+.+.+.                     +++||.|+.+|+.|+||++||+++.
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~---------------------~~~Ww~g~~~g~~G~~P~~yv~~~~   75 (80)
T 2d8h_A           17 PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDS---------------------HFDWWEGKLRGQTGIFPANYVTMNS   75 (80)
T ss_dssp             CEEEECSSCEECSSTTBCEECTTCEEEEEECCSC---------------------SSSEEEEEETTEEEEEEGGGCCBCC
T ss_pred             CEEEEECccCCcCCCCeeeEcCCCEEEEeECcCC---------------------CCCeEEEEECCEEEEEchhHeEEcC
Confidence            345677777     77999999999999988641                     2467777777888888888888764


Q ss_pred             C
Q psy9673         156 Y  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus        76 ~   76 (80)
T 2d8h_A           76 G   76 (80)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.10  E-value=7e-11  Score=66.71  Aligned_cols=46  Identities=28%  Similarity=0.565  Sum_probs=29.1

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCC-CeEEEEec-CCCCceeeeeE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDN-NWFYGEVN-GTTGAFPMSYV  128 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~-~w~~g~~~-~~~G~~P~~~v  128 (162)
                      .++++|+     ..+|+|.+||+|.++.+.++ +||.|+.+ |+.|+||++||
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv   57 (60)
T 2x3w_D            5 RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV   57 (60)
T ss_dssp             EEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGE
T ss_pred             EEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHE
Confidence            4566666     67999999999999877543 55555443 33333333333

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.10  E-value=7.1e-11  Score=67.39  Aligned_cols=39  Identities=33%  Similarity=0.613  Sum_probs=25.1

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV  128 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v  128 (162)
                      ..+|+|.+||+|.|+.+.+++||.|+.+|+.|+||++||
T Consensus         3 ~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv   41 (63)
T 1tuc_A            3 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV   41 (63)
T ss_dssp             CCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGE
T ss_pred             ccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHE
Confidence            468999999999999986665544444433333333333

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=8.5e-12  Score=73.81  Aligned_cols=45  Identities=33%  Similarity=0.851  Sum_probs=38.4

Q ss_pred             CCCccccccccccccCCCEEcccCCc-cchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~H~-fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +++++.|+||++.+. .|+.++|||. ||..|+.+.      ..||+||..+.
T Consensus        22 ~~~~~~C~IC~~~~~-~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~   67 (75)
T 2ecg_A           22 LQEEKLCKICMDRNI-AIVFVPCGHLVTCKQCAEAV------DKCPMCYTVIT   67 (75)
T ss_dssp             HHHHHSCSSSCSSCC-CBCCSSSCCCCBCHHHHHHC------SBCTTTCCBCC
T ss_pred             CCCCCCCCcCCCCCC-CEEEecCCCHHHHHHHhhCC------CCCccCCceec
Confidence            345678999999998 8899999999 999999642      37999999886

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.10  E-value=4.3e-11  Score=90.63  Aligned_cols=49  Identities=29%  Similarity=0.726  Sum_probs=42.2

Q ss_pred             CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +....|+||++.+. .|+.++|||.||..|+..|+... ...||+||..+.
T Consensus       330 ~~~~~C~ICle~~~-~pv~lpCGH~FC~~Ci~~wl~~~-~~~CP~CR~~i~  378 (389)
T 2y1n_A          330 STFQLCKICAENDK-DVKIEPCGHLMCTSCLTSWQESE-GQGCPFCRCEIK  378 (389)
T ss_dssp             TSSSBCTTTSSSBC-CEEEETTCCEECHHHHHHHHHHT-CSBCTTTCCBCC
T ss_pred             CCCCCCCccCcCCC-CeEEeCCCChhhHHHHHHHHhcC-CCCCCCCCCccC
Confidence            34579999999998 88999999999999999998732 238999999886

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.09  E-value=7.4e-11  Score=71.02  Aligned_cols=36  Identities=14%  Similarity=0.289  Sum_probs=27.1

Q ss_pred             eeEeeeec------cceeeccCCCEEEEeEecCCCeEEEEec
Q psy9673          82 SFIRFFLN------ILDLNFKKDDIVILRRKIDNNWFYGEVN  117 (162)
Q Consensus        82 ~~~~~~~~------~~el~~~~gd~i~v~~~~~~~w~~g~~~  117 (162)
                      ..++++|+      ..+|+|.+||+|.|+.+.+++||.|+..
T Consensus        19 ~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~   60 (83)
T 2ke9_A           19 LKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIH   60 (83)
T ss_dssp             EEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEEC
T ss_pred             eEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEEC
Confidence            34555555      5789999999999999877767766653

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.09  E-value=6.3e-11  Score=68.65  Aligned_cols=52  Identities=23%  Similarity=0.412  Sum_probs=36.6

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+++||.|+.                      .+|+.|+||++||+++.
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~----------------------~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           11 EEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKD----------------------AKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             EEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEEC----------------------SSSCEEEEESTTEEECC
T ss_pred             CEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEE----------------------CCCCEEEEehHHeEECc
Confidence            44567776     679999999999998886655544441                      45667777777776653

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.09  E-value=1.1e-10  Score=66.35  Aligned_cols=46  Identities=20%  Similarity=0.477  Sum_probs=30.8

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE--ecCCCCceeeeeE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYV  128 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~--~~~~~G~~P~~~v  128 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+. ++||.|+  .+|+.|+||++||
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv   59 (62)
T 2iim_A            7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFV   59 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGE
T ss_pred             cEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHE
Confidence            45667776     679999999999999884 3666655  2444444444444

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.08  E-value=1e-10  Score=67.59  Aligned_cols=51  Identities=25%  Similarity=0.515  Sum_probs=35.0

Q ss_pred             eeEeeeec------cceeeccCCCEEEEeEe-cCCCeEEEEecCCCCceeeeeEEecCCeEEEEEC--CeEEeecCCCeE
Q psy9673          82 SFIRFFLN------ILDLNFKKDDIVILRRK-IDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVN--GTTGAFPMSYVQ  152 (162)
Q Consensus        82 ~~~~~~~~------~~el~~~~gd~i~v~~~-~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~--g~~g~~p~~~~~  152 (162)
                      ..++++|+      ..+|+|.+||+|.|+.+ .+++                       ||.|+..  |+.|+||++||+
T Consensus         7 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~-----------------------Ww~g~~~~~g~~G~~P~~yv~   63 (67)
T 2kxc_A            7 QKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDG-----------------------WLYGEHDVSKARGWFPSSYTK   63 (67)
T ss_dssp             CEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTT-----------------------EEEEEESSSCCEEEEEGGGEE
T ss_pred             EEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCC-----------------------cEEEEECCCCCEEEEehHHeE
Confidence            34566665      45899999999999885 4544                       5555554  667777777776


Q ss_pred             ecc
Q psy9673         153 FVW  155 (162)
Q Consensus       153 ~~~  155 (162)
                      ++.
T Consensus        64 ~~~   66 (67)
T 2kxc_A           64 LLE   66 (67)
T ss_dssp             ESC
T ss_pred             ECC
Confidence            653

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.08  E-value=2.4e-11  Score=74.56  Aligned_cols=53  Identities=23%  Similarity=0.443  Sum_probs=39.7

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+.|+||++||+++.
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~-----------------------gWw~g~~~g~~G~fPsnyV~~~~   74 (92)
T 2o2o_A           18 RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEE-----------------------GWWEGVLNGKTGMFPSNFIKELS   74 (92)
T ss_dssp             SCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGS-----------------------SCBCCEETTEECCBCSSSEECCS
T ss_pred             CeEEEEccccCCCCCccccccCCCEEEEeEecCC-----------------------CEEEEEECCeEEEeehHHEEECC
Confidence            345677777     77999999999998877554                       56666666777777777777765


Q ss_pred             C
Q psy9673         156 Y  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus        75 ~   75 (92)
T 2o2o_A           75 G   75 (92)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.2e-10  Score=68.82  Aligned_cols=41  Identities=24%  Similarity=0.561  Sum_probs=31.5

Q ss_pred             ceeeccCCCEEEEeEe-cCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          91 LDLNFKKDDIVILRRK-IDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        91 ~el~~~~gd~i~v~~~-~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      .+|+|++||+|.|+.+ .++                       +||.|+++|+.|+||++||+.+
T Consensus        29 ~eLsf~~Gd~i~v~~~~~~~-----------------------gWw~g~~~g~~G~fP~~yv~~~   70 (75)
T 2ege_A           29 GRLALRAGDVVMVYGPMDDQ-----------------------GFYYGELGGHRGLVPAHLLDHM   70 (75)
T ss_dssp             CBCCBCTTCEEEEESCCCTT-----------------------CEEEEESSSCEEEEETTTEEEC
T ss_pred             CcceECCCCEEEEeEccCCC-----------------------CEEEEEECCcEEEEChHHeEEc
Confidence            5899999999999864 444                       5666666777888888888776

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.08  E-value=1.7e-10  Score=66.95  Aligned_cols=45  Identities=24%  Similarity=0.369  Sum_probs=33.0

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEEC--CeEEeecCCCeEeccCC
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVN--GTTGAFPMSYVQFVWYL  157 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~--g~~g~~p~~~~~~~~~~  157 (162)
                      ..+|+|.+||+|.++.+.+++|                       |.|+..  |+.|+||++||+++.+.
T Consensus        17 ~~eLs~~~Gd~i~v~~~~~~~W-----------------------~~g~~~~~g~~G~~P~~yv~~~~~~   63 (69)
T 1ruw_A           17 SSELPLKKGDIVFISRDEPSGW-----------------------SLAKLLDGSKEGWVPTAYMTPYKDT   63 (69)
T ss_dssp             TTBCCBCTTCEEEEEEECTTSE-----------------------EEEEETTSSCEEEEEGGGEEECCSC
T ss_pred             CCcccCCCCCEEEEEEecCCCe-----------------------EEEEECCCCCEEEEehHHeEEcCCc
Confidence            5789999999999998866554                       555554  67777777777766543

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=8.1e-11  Score=68.76  Aligned_cols=54  Identities=22%  Similarity=0.197  Sum_probs=41.0

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+..|+.|+||++||+.+..
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yv~~~~~   65 (71)
T 2dnu_A            9 EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLE-----------------------GWWYIRYLGKEGWAPASYLKKAKD   65 (71)
T ss_dssp             EEEECSSCBCCSSTTBCCBCTTCEEEECCCCSS-----------------------SEEEEEETTEEEEEEGGGCEECCC
T ss_pred             CEEEECCccCCCCCCCCcCCCCCEEEEeECCCC-----------------------CeEEEEECCcEEEEEHHHeEEccC
Confidence            45666666     78999999999999877544                       567777778888888888887755


Q ss_pred             CC
Q psy9673         157 LP  158 (162)
Q Consensus       157 ~~  158 (162)
                      ..
T Consensus        66 ~~   67 (71)
T 2dnu_A           66 SG   67 (71)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.07  E-value=7.5e-11  Score=68.70  Aligned_cols=52  Identities=25%  Similarity=0.410  Sum_probs=37.9

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEE--ECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE--VNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~--~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|++||+|.|+.+.++                       +||.|+  .+|+.|+||++||+++
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2cuc_A            8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQD-----------------------GWLKGLSLLTGRTGIFPSDYVIPV   64 (70)
T ss_dssp             CCEECCSCBCCCSTTBCCBCTTCEEEEEEEEET-----------------------TEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             cEEEECeeECcCCCCcCCCCCCCEEEEEEecCC-----------------------CeEEEEECCCCCEEEEchHHeEEC
Confidence            34566666     67999999999999988555                       455555  4577777777777776


Q ss_pred             cC
Q psy9673         155 WY  156 (162)
Q Consensus       155 ~~  156 (162)
                      ..
T Consensus        65 ~~   66 (70)
T 2cuc_A           65 SG   66 (70)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.07  E-value=2e-10  Score=68.69  Aligned_cols=57  Identities=19%  Similarity=0.391  Sum_probs=40.3

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+++||.|+.... |                 ..|+.|+||++||+++..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~-g-----------------~~~~~G~fP~~yv~~~~~   69 (80)
T 1ue9_A            8 EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQAR-G-----------------KKRQKGWFPASHVKLLGP   69 (80)
T ss_dssp             EEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSC-C-----------------SSCCEEEEETTSEEECCS
T ss_pred             eEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCC-C-----------------CCCcEEEEchHHeEECCC
Confidence            44666776     779999999999999987666655554311 0                 015788888888888754

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.07  E-value=6.7e-11  Score=68.72  Aligned_cols=53  Identities=17%  Similarity=0.301  Sum_probs=38.9

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeE-EeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTT-GAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~-g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.++                       +||.|+.+|+. |+||++||+++.
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~~~~~G~~P~~yv~~~~   64 (69)
T 2eqi_A            8 RTVKALYDYKAKRSDELTFCRGALIHNVSKEPG-----------------------GWWKGDYGTRIQQYFPSNYVEDIS   64 (69)
T ss_dssp             CEEEESSCBCCCSSSCCCBCTTCEEESCCCCSS-----------------------SCEEEEETTEEEEEECGGGEEECC
T ss_pred             cEEEECeeECCCCcCccCCCCCCEEEEEEcCCC-----------------------CeEEEEECCCCEEEEchHHcEECc
Confidence            45677777     67999999999999887555                       45556665555 888888888775


Q ss_pred             CC
Q psy9673         156 YL  157 (162)
Q Consensus       156 ~~  157 (162)
                      ..
T Consensus        65 ~~   66 (69)
T 2eqi_A           65 GP   66 (69)
T ss_dssp             SC
T ss_pred             cC
Confidence            43

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.07  E-value=1.7e-10  Score=66.79  Aligned_cols=53  Identities=9%  Similarity=0.172  Sum_probs=36.9

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+ +++||.|+.                      .+|+.|+||++||+++.
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~----------------------~~g~~G~~P~~yv~~~~   63 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDH-SKRWWLVKN----------------------EAGRSGYIPSNILEPLS   63 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEEC-SSSEEEEEC----------------------TTSCEEEEEGGGEECCC
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEc-CCCEEEEEE----------------------CCCCEEEEEhHHcEECC
Confidence            345677777     78999999999999988 355555441                      45666666667766654


Q ss_pred             C
Q psy9673         156 Y  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus        64 ~   64 (68)
T 1wxt_A           64 G   64 (68)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.07  E-value=1.6e-10  Score=70.76  Aligned_cols=54  Identities=22%  Similarity=0.391  Sum_probs=39.2

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEe--cCCCeEEEEecCCCCceeeeeEEecCCeEEEE-ECCeEEeecCCCeE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRK--IDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE-VNGTTGAFPMSYVQ  152 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~--~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~-~~g~~g~~p~~~~~  152 (162)
                      ...++++|+     ..+|.|.+||+|.|+.+  .++                       +||.|+ .+|+.|+||++||+
T Consensus        17 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~-----------------------~Ww~g~~~~g~~G~~P~~yv~   73 (91)
T 1wx6_A           17 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDP-----------------------EWWKCKNARGQVGLVPKNYVV   73 (91)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCT-----------------------TEEEEECTTCCEEEEEGGGEE
T ss_pred             cEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCC-----------------------CcEEEEeCCCCEEEEchHHEE
Confidence            355777777     77899999999999988  344                       455555 46777777777777


Q ss_pred             eccCC
Q psy9673         153 FVWYL  157 (162)
Q Consensus       153 ~~~~~  157 (162)
                      .+...
T Consensus        74 ~~~~~   78 (91)
T 1wx6_A           74 VLSDG   78 (91)
T ss_dssp             EEEES
T ss_pred             ECCCc
Confidence            76543

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.06  E-value=1.1e-10  Score=68.47  Aligned_cols=52  Identities=25%  Similarity=0.478  Sum_probs=37.1

Q ss_pred             eeEeeeec------cceeeccCCCEEEEeEe-cCCCeEEEEecCCCCceeeeeEEecCCeEEEEEC--CeEEeecCCCeE
Q psy9673          82 SFIRFFLN------ILDLNFKKDDIVILRRK-IDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVN--GTTGAFPMSYVQ  152 (162)
Q Consensus        82 ~~~~~~~~------~~el~~~~gd~i~v~~~-~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~--g~~g~~p~~~~~  152 (162)
                      ..++++|+      ..+|+|.+||+|.|+.+ .++                       +||.|+..  |+.|+||++||+
T Consensus         8 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------gWw~g~~~~~g~~G~fP~~yv~   64 (72)
T 1spk_A            8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKD-----------------------GWLYGEHDTTKARGWFPSSYTK   64 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBT-----------------------TEEEEEETTTCCEEEEEGGGCE
T ss_pred             eEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCC-----------------------CcEEEEECCCCCEEEEehHHeE
Confidence            34555555      45899999999999876 444                       55666665  777888888887


Q ss_pred             eccC
Q psy9673         153 FVWY  156 (162)
Q Consensus       153 ~~~~  156 (162)
                      ++..
T Consensus        65 ~~~~   68 (72)
T 1spk_A           65 LLSG   68 (72)
T ss_dssp             ECSS
T ss_pred             ECCC
Confidence            7654

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.06  E-value=4.4e-11  Score=70.87  Aligned_cols=51  Identities=31%  Similarity=0.554  Sum_probs=40.7

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+                       ++||.|+.+|+.|+||++||+.+.
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~-----------------------~~Ww~g~~~g~~G~~P~~yv~~~~   66 (76)
T 1ujy_A           11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEE-----------------------GGWWEGTLNGRTGWFPSNYVREIK   66 (76)
T ss_dssp             EEEECCSCBCCSSTTSCCBCSSCCEEESSCCS-----------------------SSCEEEEETTEEEEECTTTSEECC
T ss_pred             EEEEECccCCcCCCCcccCCCCCEEEEEEecC-----------------------CCEEEEEECCCEEEechHHEEECC
Confidence            45666776     6799999999999887644                       367777778889999999998875

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.06  E-value=9.7e-11  Score=71.03  Aligned_cols=54  Identities=20%  Similarity=0.314  Sum_probs=37.4

Q ss_pred             ccccceeeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeEE
Q psy9673          75 GLFPLVVSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ  129 (162)
Q Consensus        75 ~~~~~~~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v~  129 (162)
                      .........++++|+     ..+|+|.+||+|.|+.+ +++||.|+ .+|+.|+||++||+
T Consensus        25 ~~~~~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~   84 (86)
T 2jxb_A           25 NLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVE   84 (86)
T ss_dssp             CCCCCCCEEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBC
T ss_pred             cccCCCceEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEE
Confidence            334444566788888     77999999999999987 55666666 34555555555553

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.06  E-value=4.9e-11  Score=68.30  Aligned_cols=48  Identities=25%  Similarity=0.647  Sum_probs=40.7

Q ss_pred             CCccccccccccccCCCEEc--ccCCc-cchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVL--PCQHT-FCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~--~C~H~-fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .++..|.||++... +++.+  +|||. ||..|+.++...+.  .||+||+.+.
T Consensus         6 ~~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~~--~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPK-NGCIVHGKTGHLMACFTCAKKLKKRNK--PCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCS-CEEEEETTEEEEEECHHHHHHHHHTTC--CCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCC-CEEEECCCCCChhhHHHHHHHHHHcCC--cCCCcCcchh
Confidence            35678999999998 66766  99999 89999999887544  8999999875

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.06  E-value=2.1e-10  Score=65.32  Aligned_cols=51  Identities=16%  Similarity=0.230  Sum_probs=36.7

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      .++++|+     ..+|+|.+||+|.++.+..+                      ++||.|+.+|+.|+||++||+++.
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~----------------------~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            7 LFVALYDFVASGDNTLSITKGEKLRVLGYNHN----------------------GEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEEEEECTT----------------------SSEEEEEETTEEEEEEGGGEEESC
T ss_pred             EEEEcceECCCCCCccCCCCCCEEEEEEeCCC----------------------CCeEEEEECCCeEEEehHHeEECC
Confidence            4566666     67899999999999886432                      246666666777777777777653

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.06  E-value=1.8e-10  Score=68.80  Aligned_cols=58  Identities=26%  Similarity=0.535  Sum_probs=41.2

Q ss_pred             eeeEeeeec-----cc-eeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE-CCeEEeecCCCeEe
Q psy9673          81 VSFIRFFLN-----IL-DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPMSYVQF  153 (162)
Q Consensus        81 ~~~~~~~~~-----~~-el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~~~~~~  153 (162)
                      ...++++|+     .. +|+|.+||+|.|+.+.+..          |        .+++||.|+. +|+.|+||++||+.
T Consensus        14 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~----------~--------~~~~Ww~g~~~~g~~G~~P~~yv~~   75 (80)
T 2v1r_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPL----------G--------RDSDWWKVRTKNGNIGYIPYNYIEI   75 (80)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTT----------S--------CEEEEEEEECTTSCEEEEEGGGEEE
T ss_pred             CEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCC----------C--------CCCCcEEEEeCCCCeEEEEHHHeEE
Confidence            455777777     66 9999999999999886640          0        1235677776 68888888888887


Q ss_pred             ccC
Q psy9673         154 VWY  156 (162)
Q Consensus       154 ~~~  156 (162)
                      +..
T Consensus        76 ~~~   78 (80)
T 2v1r_A           76 IKR   78 (80)
T ss_dssp             C--
T ss_pred             cCC
Confidence            754

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.7e-10  Score=67.13  Aligned_cols=52  Identities=27%  Similarity=0.407  Sum_probs=38.7

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEEC--CeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVN--GTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~--g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+++                       ||.|+..  |+.|+||++||+++
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~g-----------------------W~~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2ct3_A            8 TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDG-----------------------WFVGVSRRTQKFGTFPGNYVAPV   64 (70)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSS-----------------------CEEEEESSSCCEEEECTTTEEET
T ss_pred             cEEEECccCCcCCcCCccCCCCCEEEEEEECCCC-----------------------EEEEEECCCCCEEEechHHeEEC
Confidence            45667776     679999999999999886654                       5555553  77888888888876


Q ss_pred             cC
Q psy9673         155 WY  156 (162)
Q Consensus       155 ~~  156 (162)
                      ..
T Consensus        65 ~~   66 (70)
T 2ct3_A           65 SG   66 (70)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.05  E-value=4.1e-11  Score=69.26  Aligned_cols=49  Identities=22%  Similarity=0.443  Sum_probs=33.8

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeEE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ  129 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v~  129 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+++||.|+ .+|+.|+||++||+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~   62 (67)
T 1aww_A            8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVT   62 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBC
T ss_pred             CeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEE
Confidence            345667776     77899999999999988776666665 44444444444443

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.05  E-value=6.2e-11  Score=67.63  Aligned_cols=48  Identities=25%  Similarity=0.598  Sum_probs=40.4

Q ss_pred             CCccccccccccccCCCEEc--ccCCc-cchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVL--PCQHT-FCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~--~C~H~-fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +....|.||++... +++++  +|||. ||..|+.++...+  ..||+||+.+.
T Consensus         5 ~~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~--~~CPiCR~~i~   55 (63)
T 2vje_B            5 NLLKPCSLCEKRPR-DGNIIHGRTGHLVTCFHCARRLKKAG--ASCPICKKEIQ   55 (63)
T ss_dssp             GGGSBCTTTSSSBS-CEEEEETTEEEEEECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred             CcCCCCcccCCcCC-CeEEEecCCCCHhHHHHHHHHHHHhC--CcCCCcCchhh
Confidence            45668999999988 66666  99998 9999999988754  38999999875

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.05  E-value=8.7e-11  Score=68.43  Aligned_cols=52  Identities=29%  Similarity=0.646  Sum_probs=39.6

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECC--eEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNG--TTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g--~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|++||+|.|+.+.++                       +||.|+..+  +.|+||++||+++
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2ecz_A            8 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDE-----------------------NWYEGRIPGTSRQGIFPITYVDVI   64 (70)
T ss_dssp             BCEEESSCCCCCSTTBCCCCTTCBCEEEEEEET-----------------------TEEEEEETTTTEEEEECTTTEEES
T ss_pred             CEEEECccCCCCCcCCcCCCCCCEEEEEEecCC-----------------------CeEEEEECCCCCEEEEchHHEEEC
Confidence            34666776     67999999999999887554                       456666644  8899999999887


Q ss_pred             cC
Q psy9673         155 WY  156 (162)
Q Consensus       155 ~~  156 (162)
                      ..
T Consensus        65 ~~   66 (70)
T 2ecz_A           65 SG   66 (70)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.04  E-value=2.4e-10  Score=67.79  Aligned_cols=58  Identities=19%  Similarity=0.297  Sum_probs=40.2

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeE------EeecCC
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTT------GAFPMS  149 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~------g~~p~~  149 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+++||.|+....                    .|+.      |+||++
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~--------------------~g~~~~~~~~G~~P~~   66 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEK--------------------KGTGLGQQLQGYIPSN   66 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSS--------------------CCSSCCCCSEEEEETT
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCC--------------------CCcCcccCCceEECHH
Confidence            345677777     678999999999999987665555554310                    0555      777777


Q ss_pred             CeEeccCCC
Q psy9673         150 YVQFVWYLP  158 (162)
Q Consensus       150 ~~~~~~~~~  158 (162)
                      ||+++..+.
T Consensus        67 yv~~~~~~~   75 (77)
T 2d8j_A           67 YVAEDSGPS   75 (77)
T ss_dssp             TEEECCCCC
T ss_pred             HeeEcCCcC
Confidence            777776543

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.04  E-value=1.3e-10  Score=65.62  Aligned_cols=31  Identities=16%  Similarity=0.319  Sum_probs=23.7

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEE
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE  115 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~  115 (162)
                      ++++|+     ..+|+|.+||+|.|+.+ +++||.++
T Consensus         4 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~   39 (60)
T 1i07_A            4 AKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVR   39 (60)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEE
T ss_pred             EEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEE
Confidence            456666     67999999999999888 66555554

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.03  E-value=9.9e-11  Score=68.57  Aligned_cols=51  Identities=16%  Similarity=0.344  Sum_probs=36.9

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE---CCeE---EeecCC
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV---NGTT---GAFPMS  149 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~---~g~~---g~~p~~  149 (162)
                      ...++++|+     ..+|+|.+||+|.| .+.++                       +||.|+.   +|+.   |+||++
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~-----------------------~Ww~g~~~~~~g~~~~~G~~P~~   65 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEE-----------------------QWWWATLLDEAGGAVAQGYVPHN   65 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECS-----------------------SCEEEEEECTTSCEEEEEEECTT
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCC-----------------------CEEEEEEcCCCCCEeCCcEEcHh
Confidence            345677777     67999999999999 77555                       4555555   5677   777777


Q ss_pred             CeEecc
Q psy9673         150 YVQFVW  155 (162)
Q Consensus       150 ~~~~~~  155 (162)
                      ||+++.
T Consensus        66 yv~~~~   71 (72)
T 2kgt_A           66 YLAERE   71 (72)
T ss_dssp             TSEEEC
T ss_pred             HEEEcc
Confidence            777653

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.02  E-value=3.2e-10  Score=69.57  Aligned_cols=60  Identities=25%  Similarity=0.501  Sum_probs=43.1

Q ss_pred             eeeEeeeec-----cc-eeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE-CCeEEeecCCCeEe
Q psy9673          81 VSFIRFFLN-----IL-DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPMSYVQF  153 (162)
Q Consensus        81 ~~~~~~~~~-----~~-el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~~~~~~  153 (162)
                      ...++++|+     .. +|+|.+||+|.|+.+.+..          |        .+++||.|+. +|+.|+||++||+.
T Consensus        14 ~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~----------~--------~~~gWw~g~~~~g~~G~~P~~yv~~   75 (92)
T 1jqq_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPL----------G--------RDSDWWKVRTKNGNIGYIPYNYIEI   75 (92)
T ss_dssp             CEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTT----------S--------CEEEEEEEEETTSCEEEEEGGGEEE
T ss_pred             CEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCC----------C--------CCCCCeEEEeCCCCEEEEehHHeEE
Confidence            455777777     66 9999999999999886540          0        1235777777 68888888888888


Q ss_pred             ccCCC
Q psy9673         154 VWYLP  158 (162)
Q Consensus       154 ~~~~~  158 (162)
                      +...+
T Consensus        76 ~~~~~   80 (92)
T 1jqq_A           76 IKRRK   80 (92)
T ss_dssp             CCCC-
T ss_pred             CCCCC
Confidence            76543

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.02  E-value=1.4e-10  Score=67.49  Aligned_cols=43  Identities=28%  Similarity=0.454  Sum_probs=29.9

Q ss_pred             ceeeccCCCEEEEeEe-cCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          91 LDLNFKKDDIVILRRK-IDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        91 ~el~~~~gd~i~v~~~-~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      .+|+|++||+|.|+.+ .+++||.|+.                     ..+|++|+||++||++.
T Consensus        25 ~eLsf~~Gd~i~v~~~~~~~~Ww~g~~---------------------~~~g~~G~fP~~yv~~~   68 (70)
T 1gcq_C           25 PFLRLNPGDIVELTKAEAEHNWWEGRN---------------------TATNEVGWFPCNRVHPY   68 (70)
T ss_dssp             CBCCBCTTCEEEEEECCTTCSEEEEEE---------------------TTTTEEEEEEGGGEEEC
T ss_pred             CcCCcCCCCEEEEEeCCCCCCCeEEEe---------------------CCCCCEeEeehHHeEEC
Confidence            4999999999999998 4555555531                     22466677777777654

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.02  E-value=1.6e-10  Score=71.72  Aligned_cols=50  Identities=34%  Similarity=0.675  Sum_probs=44.7

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+++||.|+.+|+.|+||++||+.
T Consensus        34 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   88 (98)
T 1udl_A           34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM   88 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEE
T ss_pred             ceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHHeEE
Confidence            345677777     77999999999999999889999999999999999999986

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.01  E-value=6.2e-11  Score=74.75  Aligned_cols=48  Identities=15%  Similarity=0.345  Sum_probs=33.9

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCC---CceeeeeEE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTT---GAFPMSYVQ  129 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~---G~~P~~~v~  129 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+++||.|+.+|+.   |+||+|||+
T Consensus         6 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~   61 (108)
T 2rqv_A            6 LYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVS   61 (108)
T ss_dssp             CCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCB
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEE
Confidence            34677777     7899999999999988877777776665443   444444443

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=5e-10  Score=67.08  Aligned_cols=55  Identities=16%  Similarity=0.209  Sum_probs=37.0

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCC-CeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDN-NWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~-~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ..+.++|+     ..+|+|.+||+|.|+.+.++ +||.|+..                     .+|+.|+||++||+...
T Consensus        18 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~---------------------~~g~~G~~P~~yv~~~~   76 (81)
T 1x6g_A           18 TQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHH---------------------TSGQEGLLAAGALRERS   76 (81)
T ss_dssp             CEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEET---------------------TTCCEEEEEGGGEEECC
T ss_pred             CEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeC---------------------CCCCEEEEehHHEEEcc
Confidence            34667776     77999999999999988654 45554421                     03666666667766654


Q ss_pred             CC
Q psy9673         156 YL  157 (162)
Q Consensus       156 ~~  157 (162)
                      .+
T Consensus        77 ~~   78 (81)
T 1x6g_A           77 GP   78 (81)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.00  E-value=3.8e-10  Score=66.92  Aligned_cols=53  Identities=19%  Similarity=0.392  Sum_probs=39.2

Q ss_pred             eeEeeeec------cceeeccCCCEEEEeEec-CCCeEEEEecCCCCceeeeeEEecCCeEEEE-ECCeEEeecCCCeEe
Q psy9673          82 SFIRFFLN------ILDLNFKKDDIVILRRKI-DNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE-VNGTTGAFPMSYVQF  153 (162)
Q Consensus        82 ~~~~~~~~------~~el~~~~gd~i~v~~~~-~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~-~~g~~g~~p~~~~~~  153 (162)
                      ..++++|+      ..+|+|.+||+|.|+.+. ++                       +||.|+ .+|+.|+||++||++
T Consensus        10 ~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~-----------------------gW~~g~~~~g~~G~~P~~yv~~   66 (77)
T 2enm_A           10 TKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGG-----------------------GWLEGKNNKGEQGLVPTDYVEI   66 (77)
T ss_dssp             EEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSS-----------------------SEEEEECTTCCEEEEETTTEEE
T ss_pred             cEEEECccCCCCCCCCeecCCCCCEEEEeEccCCC-----------------------CeEEEEECCCCEEEeehHHeEE
Confidence            45666666      348999999999999874 44                       566666 567888888888887


Q ss_pred             ccCC
Q psy9673         154 VWYL  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      +...
T Consensus        67 ~~~~   70 (77)
T 2enm_A           67 LPND   70 (77)
T ss_dssp             ECCC
T ss_pred             CCCC
Confidence            7543

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=4.5e-10  Score=65.36  Aligned_cols=53  Identities=13%  Similarity=0.177  Sum_probs=36.2

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEEC-CeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVN-GTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~-g~~g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+.+                      +||.|+.. |+.|+||++||+.+.
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~----------------------gW~~~~~~~g~~G~~P~~yv~~~~   65 (70)
T 2ct4_A            8 GHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGD----------------------GWTRVRRKEGGEGYVPTSYLRVTS   65 (70)
T ss_dssp             CEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSS----------------------CEEEEECSSSCEEEEEGGGEEECC
T ss_pred             CEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCC----------------------CeEEEEeCCCCEEEEEhHHeEEcC
Confidence            45677777     779999999999999876432                      34445544 666666666666654


Q ss_pred             C
Q psy9673         156 Y  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus        66 ~   66 (70)
T 2ct4_A           66 G   66 (70)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.00  E-value=3.3e-10  Score=70.05  Aligned_cols=43  Identities=21%  Similarity=0.471  Sum_probs=29.5

Q ss_pred             ceeeccCCCEEEEe-EecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE-CCeEEeecCCCeEeccC
Q psy9673          91 LDLNFKKDDIVILR-RKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        91 ~el~~~~gd~i~v~-~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~~~~~~~~~  156 (162)
                      .+|.|.+||+|.|+ .+.+++                       ||.|++ +|+.|+||++||+.+..
T Consensus        38 ~eLsf~~Gd~i~v~~~~~~~g-----------------------Ww~g~~~~g~~G~~Psnyv~~~~~   82 (96)
T 1wie_A           38 AELPLTAGKYLYVYGDMDEDG-----------------------FYEGELLDGQRGLVPSNFVDFVQD   82 (96)
T ss_dssp             TBCCCCTTCEEEEESSCCSSS-----------------------CCEEEETTCCBCBCCTTSEECCCS
T ss_pred             CeeeECCCCEEEEeEecCCCC-----------------------EEEEEECCCCEEEEchHHEEEcCC
Confidence            58999999999998 555554                       555555 56666666666666543

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.00  E-value=1.9e-10  Score=68.39  Aligned_cols=41  Identities=29%  Similarity=0.443  Sum_probs=32.3

Q ss_pred             ceeeccCCCEEEEeEec-CCCeEEEEecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEec
Q psy9673          91 LDLNFKKDDIVILRRKI-DNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFV  154 (162)
Q Consensus        91 ~el~~~~gd~i~v~~~~-~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~  154 (162)
                      .+|+|.+||+|.|+.+. ++                       +||.|+.  +|++|+||++||++.
T Consensus        33 ~eLsf~~Gd~i~v~~~~~~~-----------------------gWw~g~~~~~g~~G~fP~nyV~~~   76 (78)
T 1k1z_A           33 GFLRLNPGDIVELTKAEAEH-----------------------NWWEGRNTATNEVGWFPCNRVHPY   76 (78)
T ss_dssp             CCCCBCTTCEEEEEECCSSC-----------------------SCEEEEETTTTEEEEECSTTEEES
T ss_pred             CccCCCCCCEEEEEEcCCCC-----------------------CeEEEEECCCCCEEEEehHHeEEC
Confidence            78999999999999884 44                       5566663  688888888888865

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=5.1e-10  Score=66.76  Aligned_cols=51  Identities=24%  Similarity=0.491  Sum_probs=42.8

Q ss_pred             CCcccccccccccc-CCCEEcccC-----CccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLD-TSSKVLPCQ-----HTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~-~~p~~~~C~-----H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .+...|.||++.+. ..+.+++|.     |.|+..||.+|+..++...||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            45678999998884 357889996     9999999999998765568999999886

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.99  E-value=2.5e-11  Score=72.47  Aligned_cols=45  Identities=38%  Similarity=0.865  Sum_probs=38.9

Q ss_pred             CCCccccccccccccCCCEEcccCCc-cchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~H~-fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ++++..|+||++.+. .++.++|||. ||..|+.++      ..||+||..+.
T Consensus        15 l~~~~~C~IC~~~~~-~~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~   60 (79)
T 2yho_A           15 LKEAMLCMVCCEEEI-NSTFCPCGHTVCCESCAAQL------QSCPVCRSRVE   60 (79)
T ss_dssp             HHHHTBCTTTSSSBC-CEEEETTCBCCBCHHHHTTC------SBCTTTCCBCC
T ss_pred             CCCCCEeEEeCcccC-cEEEECCCCHHHHHHHHHhc------CcCCCCCchhh
Confidence            356778999999998 8899999999 999998754      27999999886

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=98.99  E-value=6.6e-10  Score=64.30  Aligned_cols=46  Identities=15%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe-cCCCCceeeeeE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYV  128 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~-~~~~G~~P~~~v  128 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+. ++||.++. +|+.|+||++||
T Consensus         9 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv   60 (68)
T 2k2m_A            9 KWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNIL   60 (68)
T ss_dssp             CEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGE
T ss_pred             EEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhE
Confidence            45667777     779999999999999884 56666542 334444444443

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=98.99  E-value=3.8e-10  Score=74.66  Aligned_cols=49  Identities=29%  Similarity=0.552  Sum_probs=36.6

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEec-CCCeEEEEecCCCCceeeeeEEe
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKI-DNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~-~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+. +++||.|+.+|+.|+||++||+.
T Consensus         6 ~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~   60 (142)
T 2kbt_A            6 GTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEE   60 (142)
T ss_dssp             CEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEE
T ss_pred             eEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEE
Confidence            45677777     779999999999999885 66677666666666666666665

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=98.99  E-value=6.1e-10  Score=67.41  Aligned_cols=53  Identities=23%  Similarity=0.376  Sum_probs=39.6

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEe
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQF  153 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~  153 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+. ++                       ||.|+.  +|+.|+||++||+.
T Consensus        25 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~-----------------------Ww~g~~~~~g~~G~~P~~yv~~   80 (86)
T 2oi3_A           25 DIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GE-----------------------WWKARSLATRKEGYIPSNYVAR   80 (86)
T ss_dssp             SEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SS-----------------------EEEEEETTTCCEEEEEGGGEEE
T ss_pred             CcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CC-----------------------eEEEEECCCCCEEEEehHHcEE
Confidence            456777877     679999999999999885 34                       555555  67777777777777


Q ss_pred             ccCC
Q psy9673         154 VWYL  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      +..+
T Consensus        81 ~~~~   84 (86)
T 2oi3_A           81 VDSL   84 (86)
T ss_dssp             GGGC
T ss_pred             cccC
Confidence            6543

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=9.2e-11  Score=68.54  Aligned_cols=50  Identities=20%  Similarity=0.395  Sum_probs=36.8

Q ss_pred             eEeeeec------cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEE--ECCeEEeecCCCeEec
Q psy9673          83 FIRFFLN------ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE--VNGTTGAFPMSYVQFV  154 (162)
Q Consensus        83 ~~~~~~~------~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~--~~g~~g~~p~~~~~~~  154 (162)
                      .++++|+      ..+|+|.+||+|.|+.+.++                       +||.|+  .+|+.|+||++||+++
T Consensus         9 ~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~-----------------------~W~~g~~~~~g~~G~~P~~yv~~~   65 (71)
T 2gqi_A            9 RVRAILPYTKVPDTDEISFLKGDMFIVHNELED-----------------------GWMWVTNLRTDEQGLIVEDLVEEV   65 (71)
T ss_dssp             CEEESSCCCCCTTSSCCCCCTTCBCCCCEECSS-----------------------SCEEEECTTTCCEEEECTTSEEEC
T ss_pred             EEEECcccCCCCCCCCCCCCCCCEEEEEEecCC-----------------------CEEEEEECCCCCEEEeeHHHEEEC
Confidence            3555555      45899999999988887655                       455555  4678888888888887


Q ss_pred             c
Q psy9673         155 W  155 (162)
Q Consensus       155 ~  155 (162)
                      .
T Consensus        66 ~   66 (71)
T 2gqi_A           66 S   66 (71)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=98.98  E-value=4.7e-10  Score=65.29  Aligned_cols=52  Identities=21%  Similarity=0.427  Sum_probs=34.0

Q ss_pred             eeEeeeec-----cc--eeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----IL--DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~--el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..  +|+|.+||+|.|+.+ +++||.|+.                      .+|+.|+||++||+++
T Consensus         6 ~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~----------------------~~g~~G~~P~~yv~~~   62 (70)
T 2vkn_A            6 YKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARR----------------------ANGETGIIPSNYVQLI   62 (70)
T ss_dssp             EEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEEC----------------------TTSCEEEEEGGGEEEE
T ss_pred             EEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEE----------------------CCCCEEEEehHHEEEC
Confidence            34667776     23  999999999998765 455554431                      2566666666666665


Q ss_pred             cC
Q psy9673         155 WY  156 (162)
Q Consensus       155 ~~  156 (162)
                      ..
T Consensus        63 ~~   64 (70)
T 2vkn_A           63 DG   64 (70)
T ss_dssp             EE
T ss_pred             CC
Confidence            43

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=5.1e-10  Score=68.95  Aligned_cols=56  Identities=16%  Similarity=0.388  Sum_probs=36.8

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEE--ECCeEEeecCCCeEe
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE--VNGTTGAFPMSYVQF  153 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~--~~g~~g~~p~~~~~~  153 (162)
                      ...++++|+     ..+|.|++||+|.|+.+...+                   .+++||.|+  .+|+.|+||++||++
T Consensus        16 ~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~-------------------~~~gWw~g~~~~~g~~G~fP~~yv~~   76 (94)
T 2e5k_A           16 HETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTS-------------------TSEGWIYGTSLTTGCSGLLPENYITK   76 (94)
T ss_dssp             CEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCS-------------------TTTTEEEEEESSSCCEEEEEGGGEEE
T ss_pred             CeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCC-------------------CCCCcEEEEECCCCCEEEechHHeEE
Confidence            356777887     789999999999998873100                   013455555  456666666666666


Q ss_pred             cc
Q psy9673         154 VW  155 (162)
Q Consensus       154 ~~  155 (162)
                      +.
T Consensus        77 ~~   78 (94)
T 2e5k_A           77 AD   78 (94)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=98.96  E-value=9.9e-10  Score=70.63  Aligned_cols=48  Identities=25%  Similarity=0.461  Sum_probs=37.2

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe---cCCCCceeeeeEEe
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPMSYVQI  130 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~---~~~~G~~P~~~v~~  130 (162)
                      .++++|+     ..+|+|.+||+|.|+.+.+++||.|+.   .|+.|+||++||+.
T Consensus         5 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~   60 (120)
T 2kym_A            5 FAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRI   60 (120)
T ss_dssp             EEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEE
T ss_pred             EEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEE
Confidence            4667777     789999999999999998888888874   34556666666654

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=98.95  E-value=5.8e-10  Score=65.58  Aligned_cols=33  Identities=21%  Similarity=0.403  Sum_probs=24.1

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV  116 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~  116 (162)
                      .++++|+     ..+|+|.+||+|.++.+. ++||.|+.
T Consensus        13 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~   50 (74)
T 2m0y_A           13 YGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYT   50 (74)
T ss_dssp             CEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEE
T ss_pred             EEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEE
Confidence            4556665     778999999999998874 55555543

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=98.95  E-value=5.6e-10  Score=71.69  Aligned_cols=35  Identities=17%  Similarity=0.347  Sum_probs=26.1

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV  116 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~  116 (162)
                      ...++++|+     ..+|.|.+||+|.|+++. ++||+|+.
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~   98 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYL   98 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEE
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEE
Confidence            456778887     789999999999998874 35544443

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=98.94  E-value=1.6e-10  Score=68.53  Aligned_cols=41  Identities=32%  Similarity=0.579  Sum_probs=31.2

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ..+|+|.+||+|.|+.+.+++||.|+.+|+.|+||++||+.
T Consensus         5 ~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   45 (77)
T 2jmc_A            5 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK   45 (77)
T ss_dssp             SCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEE
T ss_pred             CCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEE
Confidence            56899999999999998777777766666666666666654

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=5.9e-10  Score=64.49  Aligned_cols=44  Identities=34%  Similarity=0.891  Sum_probs=38.0

Q ss_pred             CCccccccccccccCCCEEcccCCc-cchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~-fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .+...|.||++... .++.++|||. ||..|+...      ..||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~-~~v~~pCgH~~~C~~C~~~~------~~CP~CR~~i~   57 (68)
T 2ea5_A           13 ENSKDCVVCQNGTV-NWVLLPCRHTCLCDGCVKYF------QQCPMCRQFVQ   57 (68)
T ss_dssp             CCSSCCSSSSSSCC-CCEETTTTBCCSCTTHHHHC------SSCTTTCCCCC
T ss_pred             CCCCCCCCcCcCCC-CEEEECCCChhhhHHHHhcC------CCCCCCCcchh
Confidence            45778999999998 8899999999 999999841      37999999886

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=98.93  E-value=8.9e-10  Score=75.36  Aligned_cols=49  Identities=27%  Similarity=0.497  Sum_probs=37.1

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeEE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ  129 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v~  129 (162)
                      ...++++|+     ..+|+|.+||+|.|+++.+++||.|+ .+|+.|+||+|||+
T Consensus       118 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~  172 (174)
T 3qwx_X          118 IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ  172 (174)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEE
T ss_pred             ccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEE
Confidence            445777887     78999999999999998877777776 45556666666655

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=4.7e-10  Score=67.80  Aligned_cols=52  Identities=17%  Similarity=0.298  Sum_probs=38.1

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.+++||.|+.                      .+|+.|+||++||+...
T Consensus        20 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~----------------------~~g~~G~~P~~yv~~~~   76 (85)
T 2yuq_A           20 TVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQD----------------------RNGHEGYVPSSYLVEKS   76 (85)
T ss_dssp             CEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEEC----------------------SSSCEEEEETTTCEECC
T ss_pred             eEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEE----------------------CCCCEEEEehHHeEEcc
Confidence            45677777     779999999999999886665555431                      25777777777777753

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.93  E-value=2.2e-10  Score=64.80  Aligned_cols=53  Identities=15%  Similarity=0.174  Sum_probs=44.3

Q ss_pred             ccccccccccccCCCEEc-ccCCccchhcHHHHHhcCCCcccccccccccccccCCCcc
Q psy9673           9 LLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPN   66 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n   66 (162)
                      .+.|+|+++.+. +|+++ ++||+|+..||.+|+..++  .||+.+.++.  ..++.++
T Consensus         3 ~~~CpIs~~~m~-dPV~~~~sG~~yer~~I~~~l~~~~--~cP~t~~~L~--~~~Lip~   56 (61)
T 2bay_A            3 HMLCAISGKVPR-RPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLS--IEEIVEI   56 (61)
T ss_dssp             -CCCTTTCSCCS-SEEEETTTTEEEEHHHHHHHHHHHS--BCTTTCCBCC--GGGCEEC
T ss_pred             eEEecCCCCCCC-CCEEeCCCCcEEcHHHHHHHHHhCC--CCcCCcCCCC--hhhcEEC
Confidence            478999999999 88998 9999999999999998655  6999999886  4454443

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=5.1e-10  Score=64.77  Aligned_cols=50  Identities=14%  Similarity=0.319  Sum_probs=37.0

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE-CCeEEeecCCCeEeccC
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~~~~~~~~~  156 (162)
                      .++++|+     ..+|+|.+||+|.|+++. +                       +||.|+. +|+.|+||++||+.+..
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~-----------------------~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            9 YVKILYDFTARNANELSVLKDEVLEVLEDG-R-----------------------QWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             CEECSSCBCCSSSSBCCBCTTCEEEEEECS-S-----------------------SEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             EEEECccCCCCCCCccCCCCCCEEEEEEcC-C-----------------------CEEEEEECCCCEEEEEHHHeEECCC
Confidence            4566666     779999999999998873 4                       4555553 67788888888887653

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=98.92  E-value=3.6e-10  Score=69.47  Aligned_cols=58  Identities=21%  Similarity=0.357  Sum_probs=40.6

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCe-EEeecCCCeEec
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGT-TGAFPMSYVQFV  154 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~-~g~~p~~~~~~~  154 (162)
                      ...++++|+     ..+|.|.+||+|.|+.+.++.                   .+++||.|+++|+ .|+||++||+++
T Consensus        17 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~-------------------~~~gWw~g~~~~~~~G~~P~~yv~~~   77 (93)
T 1wxu_A           17 HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQP-------------------KVRGWLLASLDGQTTGLIPANYVKIL   77 (93)
T ss_dssp             BBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSC-------------------SCSSCEEEESSSSSCEEECSTTEEEC
T ss_pred             CEEEEECccCCCCCCCccCcCCCCEEEEEECCCCC-------------------CCCCcEEEEeCCcCEEEEehHHEEEc
Confidence            345677777     779999999999999886620                   1235666666565 777777777776


Q ss_pred             cCC
Q psy9673         155 WYL  157 (162)
Q Consensus       155 ~~~  157 (162)
                      ...
T Consensus        78 ~~~   80 (93)
T 1wxu_A           78 GKR   80 (93)
T ss_dssp             CCB
T ss_pred             CCc
Confidence            543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=9.3e-10  Score=64.40  Aligned_cols=57  Identities=19%  Similarity=0.445  Sum_probs=43.5

Q ss_pred             CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCC
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDEL   63 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l   63 (162)
                      +....|+||.+++.....-..|+|.|+..||.+|+..++...||+|+.........+
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~   69 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKS   69 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCC
T ss_pred             CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCC
Confidence            455689999999974433337999999999999998764458999999876333333

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=98.92  E-value=1.4e-09  Score=66.34  Aligned_cols=47  Identities=21%  Similarity=0.466  Sum_probs=35.9

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe--cCCCCceeeeeEEe
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQI  130 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~--~~~~G~~P~~~v~~  130 (162)
                      .++++|+     ..+|+|.+||+|.++.+ +++||.|+.  +|+.|+||++||+.
T Consensus         5 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~   58 (90)
T 3reb_B            5 IVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVAR   58 (90)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             EEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEE
Confidence            3556666     67999999999999987 567887775  66677777777765

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.92  E-value=1.3e-10  Score=74.06  Aligned_cols=48  Identities=19%  Similarity=0.412  Sum_probs=0.9

Q ss_pred             CccccccccccccCC-----------------CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTS-----------------SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~-----------------p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ++..|+||++.|...                 .+.++|+|.||..||.+|+..+.  .||+||+.+.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~--~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ--VCPLDNREWE  111 (117)
T ss_dssp             CC-----------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC--cCCCCCCeee
Confidence            356799999999631                 12358999999999999998755  8999999764

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=98.91  E-value=7.2e-10  Score=70.69  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=27.2

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeE-----ecCCCeEEEE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRR-----KIDNNWFYGE  115 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~-----~~~~~w~~g~  115 (162)
                      ...++++|+     ..+|+|.+||+|.|+.     ..+++||.|+
T Consensus        44 ~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~   88 (115)
T 1bb9_A           44 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV   88 (115)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEE
T ss_pred             ceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEE
Confidence            456788888     7799999999999998     5555565554

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.91  E-value=2.6e-10  Score=70.22  Aligned_cols=49  Identities=27%  Similarity=0.682  Sum_probs=38.0

Q ss_pred             CCccccccccccccCCCEE--cccCCccchhcHHHHHhcC------CCccccc--cccc
Q psy9673           7 NDLLECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSH------KELRCPE--CRVL   55 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~--~~C~H~fC~~Cl~~~~~~~------~~~~Cp~--Cr~~   55 (162)
                      .+.+.|+||++.+..+..+  .+|||.||..|+..++..+      ..+.||.  |+..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            3578899999999733222  3799999999999998641      2468999  9987

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=1.5e-09  Score=64.61  Aligned_cols=34  Identities=12%  Similarity=0.356  Sum_probs=25.2

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE  115 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~  115 (162)
                      ...++++|+     ..+|+|.+||+|.|++. +++||.++
T Consensus        17 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~   55 (79)
T 2cud_A           17 SDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAI   55 (79)
T ss_dssp             CCEEEESSCSSCTTTSCCSSCTTCEEEEEEE-ETTEEEEE
T ss_pred             CeEEEEccCCCCCCCCcCCCCCCCEEEEEec-CCCeEEEE
Confidence            345777877     67999999999999874 45555554

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=98.90  E-value=9.5e-10  Score=67.16  Aligned_cols=69  Identities=20%  Similarity=0.302  Sum_probs=41.7

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEe
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQF  153 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~  153 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+....     ++...|.   .-...+++||.|+.  +|++|+||++||+.
T Consensus        11 ~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~-----l~~~~~~---~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~   82 (90)
T 3o5z_A           11 GFQYRALYPFRRERPEDLELLPGDVLVVSRAALQA-----LGVAEGG---ERCPQSVGWMPGLNERTRQRGDFPGTYVEF   82 (90)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHH-----TTCCTTG---GGCHHHHCEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CcEEEEeeeECCCCCCccCCcCCCEEEEEeccccc-----ccccccc---ccCCCCCCceEEEeCCCCCEEEeehHHEEE
Confidence            456778887     789999999999987531000     0000000   00001236777776  58888888888887


Q ss_pred             ccCC
Q psy9673         154 VWYL  157 (162)
Q Consensus       154 ~~~~  157 (162)
                      +...
T Consensus        83 i~~~   86 (90)
T 3o5z_A           83 LGPV   86 (90)
T ss_dssp             EEEE
T ss_pred             eccc
Confidence            7653

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=98.90  E-value=1.3e-09  Score=68.83  Aligned_cols=49  Identities=24%  Similarity=0.525  Sum_probs=33.5

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe--cCCCCceeeeeEE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ  129 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~--~~~~G~~P~~~v~  129 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+++||.|+.  +|+.|+||++||+
T Consensus        27 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~   82 (109)
T 2yt6_A           27 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVV   82 (109)
T ss_dssp             CCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEE
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcE
Confidence            455777777     789999999999999987766666553  3344444444443

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=98.88  E-value=8.2e-11  Score=68.76  Aligned_cols=53  Identities=23%  Similarity=0.404  Sum_probs=35.8

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEE-eecCCCeEeccCC
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTG-AFPMSYVQFVWYL  157 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g-~~p~~~~~~~~~~  157 (162)
                      ++++|+     ..+|+|.+||+|.|+.+.+++||.|+.                       +|+.| +||++||+.+...
T Consensus         9 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-----------------------~g~~gG~~P~~yv~~~~~~   65 (71)
T 1hsq_A            9 VKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY-----------------------GGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             CCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBC-----------------------SSSCSCCEETTTCCSCSCC
T ss_pred             EEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEE-----------------------CCeEEeEEChHHcEECCCc
Confidence            445555     678999999999988886665555554                       44554 6667777666554


Q ss_pred             CC
Q psy9673         158 PI  159 (162)
Q Consensus       158 ~~  159 (162)
                      ..
T Consensus        66 ~~   67 (71)
T 1hsq_A           66 EG   67 (71)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=98.87  E-value=5.2e-10  Score=67.29  Aligned_cols=68  Identities=19%  Similarity=0.317  Sum_probs=40.0

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEe
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQF  153 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~  153 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+...     .++...+.   .-...+++||.|+.  +|+.|+||++||+.
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~-----~~~~~~~~---e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~   76 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLV-----ALGFSDGQ---EARPEEIGWLNGYNETTGERGDFPGTYVEY   76 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHH-----HHTCTTTG---GGCHHHHCEEEEEETTTTEEEEEEGGGEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeecccc-----cccccccc---ccCCCCCccEEEEeCCCCCEEEEehHHEEE
Confidence            345677777     77999999999999864100     00000000   00001236777754  58888888888887


Q ss_pred             ccC
Q psy9673         154 VWY  156 (162)
Q Consensus       154 ~~~  156 (162)
                      +..
T Consensus        77 ~~~   79 (83)
T 3i5r_A           77 IGR   79 (83)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            654

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.87  E-value=3.1e-10  Score=85.30  Aligned_cols=45  Identities=33%  Similarity=0.907  Sum_probs=40.0

Q ss_pred             CCCccccccccccccCCCEEcccCCc-cchhcHHHHHhcCCCccccccccccc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~H~-fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +++++.|+||++.+. .|+.++|||. ||..|+..+      ..||+||..+.
T Consensus       292 l~~~~~C~IC~~~~~-~~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~  337 (345)
T 3t6p_A          292 LQEERTCKVCMDKEV-SVVFIPCGHLVVCQECAPSL------RKCPICRGIIK  337 (345)
T ss_dssp             HHTTCBCTTTSSSBC-CEEEETTCCEEECTTTGGGC------SBCTTTCCBCC
T ss_pred             CcCCCCCCccCCcCC-ceEEcCCCChhHhHHHHhcC------CcCCCCCCCcc
Confidence            356789999999999 8899999999 999999876      37999999886

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.84  E-value=1.9e-09  Score=75.53  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=26.7

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeE-----ecCCCeEEEE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRR-----KIDNNWFYGE  115 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~-----~~~~~w~~g~  115 (162)
                      ...++++|+     ..+|.|.+||+|.|+.     ..+++||.|+
T Consensus       142 ~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~  186 (213)
T 1mv3_A          142 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV  186 (213)
T ss_dssp             CEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEE
T ss_pred             ceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEE
Confidence            346788888     7899999999999998     4455555554

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=98.83  E-value=9.9e-11  Score=69.50  Aligned_cols=48  Identities=21%  Similarity=0.377  Sum_probs=36.0

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe-cCCCCceeeeeEE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYVQ  129 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~-~~~~G~~P~~~v~  129 (162)
                      ..++++|+     ..+|+|.+||+|.|+++.+++||.|+. +|+.|+||++||+
T Consensus        21 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~   74 (77)
T 1awj_A           21 TLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV   74 (77)
T ss_dssp             SCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCC
T ss_pred             eEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEE
Confidence            34566666     779999999999999887777877773 6666666666664

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=98.83  E-value=3e-09  Score=75.11  Aligned_cols=52  Identities=29%  Similarity=0.624  Sum_probs=38.1

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+++                       ||.|+++|+.|+||++||+++.
T Consensus       158 ~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~-----------------------W~~g~~~g~~G~~P~~yv~~~~  214 (217)
T 1gri_A          158 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPN-----------------------WWKGACHGQTGMFPRNYVTPVN  214 (217)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSS-----------------------EEEEECSSCEEEEEGGGEEEEC
T ss_pred             ceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCC-----------------------eEEEEECCeEEEEeHHHeEECC
Confidence            456778887     689999999999999886654                       5555555666666666666653

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=98.83  E-value=2.2e-09  Score=60.40  Aligned_cols=39  Identities=33%  Similarity=0.590  Sum_probs=29.1

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE-CCeEEeecCCCeEec
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPMSYVQFV  154 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~~~~~~~  154 (162)
                      +.-+.|-+-.-.-+.+++||.|+. +|++|+||++|||.+
T Consensus        21 Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A           21 LRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             CCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             ccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            344455544433345889999998 699999999999975

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=98.83  E-value=7.3e-09  Score=59.24  Aligned_cols=10  Identities=50%  Similarity=0.976  Sum_probs=6.7

Q ss_pred             CceeeeeEEe
Q psy9673         121 GAFPMSYVQI  130 (162)
Q Consensus       121 G~~P~~~v~~  130 (162)
                      |+||+|||++
T Consensus        53 G~~P~nyVe~   62 (65)
T 2lj0_A           53 GTFPGNYVKP   62 (65)
T ss_dssp             EEEETTSEEE
T ss_pred             EEEehhHeEE
Confidence            6777777653

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=98.81  E-value=3.8e-09  Score=77.33  Aligned_cols=48  Identities=33%  Similarity=0.601  Sum_probs=31.8

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ  129 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~  129 (162)
                      ..+.++|+     .++++|.+||+|.|..+.+++||.|+.+|+.|+||++||+
T Consensus         3 ~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~   55 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVK   55 (283)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEETTEEEEEEGGGEE
T ss_pred             eEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEECCCCCcCCCcccc
Confidence            34666776     7799999999999999876655554444444444444443

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=98.81  E-value=2.6e-09  Score=73.10  Aligned_cols=57  Identities=19%  Similarity=0.538  Sum_probs=48.1

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe--cCCCCceeeeeEEe-----cCCeEEEEE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQI-----DNNWFYGEV  139 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~--~~~~G~~P~~~v~~-----~~~w~~g~~  139 (162)
                      ..+.++|+     ..+|+|.+||+|.|+++ +.+||.++.  +|+.|+||++||+.     ...|+.|.+
T Consensus        13 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~~l~~~~w~~g~i   81 (175)
T 4d8k_A           13 NLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKANSLEPEPWFFKNL   81 (175)
T ss_dssp             CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETTCSTTCTTBCSSC
T ss_pred             cEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeeccccccccccccccceecCcc
Confidence            35667777     77999999999999998 679999997  78999999999986     467887765

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=98.78  E-value=6.1e-09  Score=72.34  Aligned_cols=49  Identities=18%  Similarity=0.256  Sum_probs=44.2

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ..+.++|+     ..+|+|.+||+|.|+.+.+++||.|+.+|+.|+||++||+.
T Consensus        82 ~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~  135 (193)
T 1ng2_A           82 EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK  135 (193)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEE
T ss_pred             eeeeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEE
Confidence            44667777     66899999999999999999999999999999999999987

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=98.78  E-value=7.8e-09  Score=59.52  Aligned_cols=17  Identities=47%  Similarity=0.970  Sum_probs=14.4

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        46 g~~~g~~G~fP~~yv~~   62 (67)
T 2eyx_A           46 GECNGKRGHFPFTHVRL   62 (67)
T ss_dssp             EEETTEEEEEEGGGBCC
T ss_pred             EEECCCEEEEehHhEEE
Confidence            45678999999999975

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.76  E-value=3.3e-09  Score=84.23  Aligned_cols=59  Identities=24%  Similarity=0.631  Sum_probs=51.5

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe--cCCCCceeeeeEEe-----cCCeEEEEEC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQI-----DNNWFYGEVN  140 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~--~~~~G~~P~~~v~~-----~~~w~~g~~~  140 (162)
                      ..++++|+     ..+|+|.+||+|.|+++.+++||.|+.  +|+.|+||+|||+.     .+.|+.|.+.
T Consensus        86 ~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~l~~~~wy~g~i~  156 (535)
T 2h8h_A           86 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKIT  156 (535)
T ss_dssp             -CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETTSGGGSTTBCCSCC
T ss_pred             cEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcccccccccceeccccC
Confidence            45778888     789999999999999999999999998  79999999999996     4689888773

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=98.75  E-value=1.5e-08  Score=56.96  Aligned_cols=15  Identities=60%  Similarity=1.172  Sum_probs=12.6

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||++||+.
T Consensus        44 ~~g~~G~~P~~yv~~   58 (60)
T 1w70_A           44 VRGATGIFPLSFVKI   58 (60)
T ss_dssp             ETTEEEEEEGGGEEE
T ss_pred             ECCCEEEechHHEEE
Confidence            457899999999974

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=98.74  E-value=1.4e-08  Score=56.67  Aligned_cols=17  Identities=41%  Similarity=0.913  Sum_probs=14.0

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        39 g~~~g~~G~~P~~yv~~   55 (58)
T 2bz8_A           39 GQINGRRGLFPDNFVRE   55 (58)
T ss_dssp             EEETTEEEEEEGGGEEE
T ss_pred             EEECCeEEEEehHHeEE
Confidence            44578899999999975

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=98.74  E-value=1.6e-08  Score=58.34  Aligned_cols=17  Identities=41%  Similarity=1.081  Sum_probs=14.1

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        41 g~~~g~~G~~P~~yv~~   57 (68)
T 2ew3_A           41 GMIHGESGFFPINYVEV   57 (68)
T ss_dssp             EEETTEEEEEEGGGEEE
T ss_pred             EEECCcEEEeeHHHEEE
Confidence            44578899999999986

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.73  E-value=1e-08  Score=79.74  Aligned_cols=58  Identities=24%  Similarity=0.633  Sum_probs=50.8

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe--cCCCCceeeeeEEe-----cCCeEEEEEC
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQI-----DNNWFYGEVN  140 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~--~~~~G~~P~~~v~~-----~~~w~~g~~~  140 (162)
                      .+.++|+     ..+++|++||++.|+++.+++||.|+.  +|+.|+||+|||+.     .+.|+.|.+.
T Consensus         4 ~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~le~~~w~~g~~~   73 (452)
T 1fmk_A            4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKIT   73 (452)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTSGGGSTTEEETCC
T ss_pred             EEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccccccccccccccCCcc
Confidence            4566776     789999999999999999999999998  89999999999997     4689998773

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=98.71  E-value=1.6e-08  Score=57.41  Aligned_cols=39  Identities=23%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             CCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673         119 TTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       119 ~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~  157 (162)
                      +.|-+-...-+.+++||.|+.+|+.|+||++||+++.+.
T Consensus         9 ~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   47 (63)
T 1tuc_A            9 KKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   47 (63)
T ss_dssp             CTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSCS
T ss_pred             CCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEcCCC
Confidence            445544444445889999999999999999999998654

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=98.70  E-value=2.4e-08  Score=55.71  Aligned_cols=17  Identities=35%  Similarity=0.741  Sum_probs=13.8

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        39 g~~~g~~G~~P~~yv~~   55 (58)
T 1uti_A           39 GRLHNKLGLFPANYVAP   55 (58)
T ss_dssp             EEETTEEEEEEGGGEEE
T ss_pred             EEECCeEEEeeHHHeEE
Confidence            44567899999999975

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=98.69  E-value=2.3e-08  Score=57.19  Aligned_cols=18  Identities=44%  Similarity=0.896  Sum_probs=14.8

Q ss_pred             EEEecCCCCceeeeeEEe
Q psy9673         113 YGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       113 ~g~~~~~~G~~P~~~v~~  130 (162)
                      .|+.+|+.|+||++||+.
T Consensus        38 ~g~~~g~~G~fP~~yv~~   55 (65)
T 2nwm_A           38 EGEHHGRLGIFPANYVEV   55 (65)
T ss_dssp             EEEETTEEEEECGGGEEE
T ss_pred             EEEECCcEEEEehhhEEE
Confidence            345678899999999986

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=98.69  E-value=2.8e-08  Score=58.13  Aligned_cols=18  Identities=39%  Similarity=0.490  Sum_probs=14.8

Q ss_pred             EEecCCCCceeeeeEEec
Q psy9673         114 GEVNGTTGAFPMSYVQID  131 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~~  131 (162)
                      |+.+|+.|+||++||+.-
T Consensus        37 g~~~g~~G~~P~~yv~~~   54 (73)
T 2kxd_A           37 VEVNDRQGFVPAAYVKKL   54 (73)
T ss_dssp             EEETTEEEEEEGGGEEEC
T ss_pred             EEECCCEEEEehHHeEEc
Confidence            446788999999999863

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.69  E-value=1.4e-08  Score=79.36  Aligned_cols=51  Identities=25%  Similarity=0.564  Sum_probs=38.9

Q ss_pred             eeeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          80 VVSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        80 ~~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ....++++|+     .++++|.+||+|.|.++.+++||.|+.+|+.|+||++||+.
T Consensus        29 ~~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   84 (466)
T 2pz1_A           29 SVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRL   84 (466)
T ss_dssp             CCEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             CccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeee
Confidence            3567888888     77999999999999998777676666666666666666654

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=3.6e-08  Score=56.85  Aligned_cols=17  Identities=35%  Similarity=0.761  Sum_probs=13.9

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        45 g~~~g~~G~~P~~yv~~   61 (68)
T 2dl4_A           45 GKIQDRIGFFPANFVQR   61 (68)
T ss_dssp             EECSSCEEEEETTTEEE
T ss_pred             EEECCcEEEEehHHeEE
Confidence            44567899999999986

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=98.69  E-value=3e-08  Score=55.29  Aligned_cols=14  Identities=57%  Similarity=1.032  Sum_probs=12.0

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||++||+.
T Consensus        43 ~g~~G~~P~~yv~~   56 (58)
T 1zx6_A           43 NGRTGIFPANYVKP   56 (58)
T ss_dssp             TTEEEEEEGGGEEE
T ss_pred             CCcEEEeeHHHEEE
Confidence            57889999999974

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=98.68  E-value=1.3e-08  Score=70.21  Aligned_cols=50  Identities=22%  Similarity=0.467  Sum_probs=37.7

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe---cCCCCceeeeeEEecC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPMSYVQIDN  132 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~---~~~~G~~P~~~v~~~~  132 (162)
                      ..++++|+     ..+++|.+||+|.|..+.+ +||.|+.   +|+.|+||++||++-+
T Consensus        18 ~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~   75 (184)
T 3a98_A           18 RHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKE   75 (184)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEEC
T ss_pred             eEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEec
Confidence            45677777     7899999999999998866 4887776   5666777777766533

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=98.68  E-value=1.4e-08  Score=58.06  Aligned_cols=17  Identities=35%  Similarity=0.747  Sum_probs=14.1

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        39 g~~~g~~G~fP~~yv~~   55 (65)
T 2fei_A           39 GTLNNKLGLFPSNFVKE   55 (65)
T ss_dssp             EESSSCEEEEETTTSCB
T ss_pred             EEECCcEEEecHHHEEE
Confidence            44578899999999975

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=98.68  E-value=3.4e-08  Score=55.27  Aligned_cols=39  Identities=28%  Similarity=0.491  Sum_probs=29.8

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      +.-+.|-+-.-.-+.+++||.|+.+|+.|+||++||+++
T Consensus        21 Ls~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X           21 LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            333455554444445889999999999999999999975

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.68  E-value=1.2e-08  Score=80.73  Aligned_cols=59  Identities=14%  Similarity=0.079  Sum_probs=46.7

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE--ecCCCCceeeeeEEe-----cCCeEEEEE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQI-----DNNWFYGEV  139 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~--~~~~~G~~P~~~v~~-----~~~w~~g~~  139 (162)
                      ....+++|+     .++|+|++||+|.|..+.+++||.|+  .+|+.|+||+|||+.     .+.|+.+--
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~~~~~p~y~~~~  512 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEAE  512 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCCEECCCCCCC--
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEcccCCCCCChhhhh
Confidence            456788887     77999999999999999888898888  577788888888875     556766544

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=98.67  E-value=2.7e-08  Score=55.51  Aligned_cols=40  Identities=25%  Similarity=0.555  Sum_probs=30.4

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEEC--CeEEeecCCCeEecc
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVN--GTTGAFPMSYVQFVW  155 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~--g~~g~~p~~~~~~~~  155 (162)
                      +.-+.|-+-.-.-+.+++||.|+..  |+.|+||++||++++
T Consensus        17 Ls~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   58 (58)
T 1jo8_A           17 LTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN   58 (58)
T ss_dssp             CCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             cccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEECC
Confidence            3334555444444458999999998  999999999999864

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=98.67  E-value=3.6e-08  Score=55.38  Aligned_cols=39  Identities=21%  Similarity=0.427  Sum_probs=29.9

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      +.-+.|-+-...-+.+++||.|+.+|+.|+||++||+++
T Consensus        22 Ls~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A           22 LSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             CCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            333455554444445899999999999999999999975

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=4.3e-08  Score=56.50  Aligned_cols=18  Identities=28%  Similarity=0.468  Sum_probs=14.9

Q ss_pred             EEEecCCCCceeeeeEEe
Q psy9673         113 YGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       113 ~g~~~~~~G~~P~~~v~~  130 (162)
                      .|+.+|+.|+||++||+.
T Consensus        44 ~g~~~g~~G~~P~~yv~~   61 (68)
T 2dmo_A           44 TVMFNGQKGLVPCNYLEP   61 (68)
T ss_dssp             EEEETTEEEEECSTTEEE
T ss_pred             EEEeCCCEEEeehHHeEE
Confidence            345678899999999986

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=98.67  E-value=3.3e-08  Score=56.24  Aligned_cols=16  Identities=50%  Similarity=0.785  Sum_probs=13.3

Q ss_pred             EecCCCCceeeeeEEe
Q psy9673         115 EVNGTTGAFPMSYVQI  130 (162)
Q Consensus       115 ~~~~~~G~~P~~~v~~  130 (162)
                      +.+|+.|+||++||+.
T Consensus        45 ~~~g~~G~~P~~yv~~   60 (64)
T 2ak5_A           45 THNGRTGWFPSNYVRE   60 (64)
T ss_dssp             EETTEEEEEEGGGEEE
T ss_pred             EECCCEEEEehHHeEE
Confidence            4467899999999975

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=98.66  E-value=3.2e-09  Score=78.71  Aligned_cols=48  Identities=23%  Similarity=0.440  Sum_probs=42.9

Q ss_pred             eEeeeec-------cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          83 FIRFFLN-------ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        83 ~~~~~~~-------~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      .++++|+       ..+|+|.+||+|.|+.+.+++||.|+++|+.|+||++||+.
T Consensus       239 ~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~  293 (304)
T 2eyz_A          239 YARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRL  293 (304)
T ss_dssp             CSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTTSCC
T ss_pred             EEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHHEEE
Confidence            4566665       46899999999999999999999999999999999999986

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=98.66  E-value=2.3e-09  Score=76.51  Aligned_cols=49  Identities=35%  Similarity=0.744  Sum_probs=34.3

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeEE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ  129 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v~  129 (162)
                      ...++++|+     ..+|+|.+||+|.|+++.+++||.|+ .+|+.|+||++||+
T Consensus       136 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~  190 (230)
T 2dvj_A          136 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE  190 (230)
T ss_dssp             CCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSC
T ss_pred             ceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeE
Confidence            445677777     77899999999999998777666665 44444444444444

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.66  E-value=2.9e-08  Score=78.07  Aligned_cols=59  Identities=15%  Similarity=0.369  Sum_probs=52.1

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEec-CCCeEEEEecCCCCceeeeeEEe-----cCCeEEEEEC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKI-DNNWFYGEVNGTTGAFPMSYVQI-----DNNWFYGEVN  140 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~-~~~w~~g~~~~~~G~~P~~~v~~-----~~~w~~g~~~  140 (162)
                      ..+.++|+     ..+++|++||++.++++. +.+||.++..|+.|+||+|||+.     .+.|+.|.+.
T Consensus        44 ~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~~le~~~wyhg~i~  113 (495)
T 1opk_A           44 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVS  113 (495)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESSSGGGSTTEEEECC
T ss_pred             cEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceeccccccccccccchhhhccCCC
Confidence            45778887     789999999999999887 67999999999999999999986     6799999884

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=98.65  E-value=1.3e-08  Score=58.83  Aligned_cols=24  Identities=21%  Similarity=0.499  Sum_probs=22.0

Q ss_pred             cCCCeEEEEecCCCCceeeeeEEe
Q psy9673         107 IDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       107 ~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      .+++||.|+.+|+.|+||++||+.
T Consensus        37 ~~~~Ww~g~~~g~~G~~P~~yv~~   60 (69)
T 1wyx_A           37 GLDGWWLCSLHGRQGIVPGNRLKI   60 (69)
T ss_dssp             GCTTEEEEEETTEEEEEEGGGEEE
T ss_pred             CCCCcEEEEECCcEEEechhhEEE
Confidence            478999999999999999999985

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.65  E-value=1.5e-08  Score=78.75  Aligned_cols=59  Identities=31%  Similarity=0.487  Sum_probs=48.3

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEe-cCCCeEEEEec-CCCCceeeeeEEe-----------cCCeEEEEE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRK-IDNNWFYGEVN-GTTGAFPMSYVQI-----------DNNWFYGEV  139 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~-~~~~w~~g~~~-~~~G~~P~~~v~~-----------~~~w~~g~~  139 (162)
                      ...+.++|+     ..+|+|++||+|.++++ .+.+||.|+.. |+.|+||+|||+.           ...|+.|.+
T Consensus        11 ~~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~~wyhg~i   87 (450)
T 1k9a_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKAGTKLSLMPWFHGKI   87 (450)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCCCCCTTEESCTTBCTTC
T ss_pred             CCEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccccccccccccccccccCc
Confidence            345777887     77999999999999998 56789999976 8889999999986           346887766

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=98.65  E-value=3.9e-08  Score=54.81  Aligned_cols=14  Identities=43%  Similarity=0.712  Sum_probs=12.0

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||++||+.
T Consensus        43 ~g~~G~~P~~yv~~   56 (58)
T 1sem_A           43 NNRRGIFPSNYVCP   56 (58)
T ss_dssp             TTEEEEEEGGGEEE
T ss_pred             CCcEEEechHHeEE
Confidence            46889999999975

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.65  E-value=2.1e-08  Score=56.70  Aligned_cols=14  Identities=36%  Similarity=0.759  Sum_probs=12.0

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||++||+.
T Consensus        46 ~g~~G~~P~~yv~~   59 (62)
T 1k4u_S           46 KGKVGIFPKVFVED   59 (62)
T ss_dssp             SSCEEEECGGGCCC
T ss_pred             CCcEEEEeHHHEEE
Confidence            57889999999974

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=98.64  E-value=4.2e-08  Score=55.95  Aligned_cols=15  Identities=40%  Similarity=0.915  Sum_probs=12.8

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||++||+.
T Consensus        49 ~~g~~G~~P~~yv~~   63 (65)
T 3ulr_B           49 CKGRYGLFPANYVEL   63 (65)
T ss_dssp             ETTEEEEEEGGGEEE
T ss_pred             ECCcEEEEehHHeEE
Confidence            467889999999975

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=98.63  E-value=4.9e-08  Score=54.38  Aligned_cols=14  Identities=50%  Similarity=0.961  Sum_probs=12.1

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||++||+.
T Consensus        43 ~g~~G~~P~~yv~~   56 (58)
T 2vwf_A           43 HGQTGMFPRNYVTA   56 (58)
T ss_dssp             TTEEEEEEGGGEEE
T ss_pred             CCcEEEEchHHeEE
Confidence            56889999999975

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.06  E-value=3.7e-09  Score=78.35  Aligned_cols=49  Identities=35%  Similarity=0.489  Sum_probs=43.4

Q ss_pred             eeEeeeec-------cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          82 SFIRFFLN-------ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        82 ~~~~~~~~-------~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ..++++|+       ..+|+|.+||+|.|+++.+++||.|+++|+.|+||++||+.
T Consensus       238 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~  293 (303)
T 2lqn_A          238 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI  293 (303)
Confidence            34677766       34799999999999999999999999999999999999986

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=98.63  E-value=2.9e-08  Score=57.24  Aligned_cols=17  Identities=41%  Similarity=0.911  Sum_probs=14.1

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        45 g~~~g~~G~~P~~yv~~   61 (68)
T 1wi7_A           45 GVLNGKTGMFPSNFIKE   61 (68)
T ss_dssp             ECSTTCCEEEETTSEEE
T ss_pred             EEECCcEEEEchHHEEE
Confidence            34568899999999986

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=98.62  E-value=2.6e-08  Score=56.71  Aligned_cols=21  Identities=38%  Similarity=0.944  Sum_probs=19.4

Q ss_pred             CeEEEEecCCCCceeeeeEEe
Q psy9673         110 NWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       110 ~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      +||.|+.+|+.|+||++||+.
T Consensus        42 ~W~~g~~~g~~G~~P~~yv~~   62 (64)
T 2jte_A           42 GWWKGELNGKEGVFPDNFAVQ   62 (64)
T ss_dssp             TEEEEEETTEEEEEEGGGEEE
T ss_pred             CEEEEEECCeEEEEeHHHEEE
Confidence            699999999999999999974

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.62  E-value=6.1e-08  Score=57.38  Aligned_cols=17  Identities=47%  Similarity=1.003  Sum_probs=14.3

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        45 g~~~g~~G~~P~~yv~~   61 (78)
T 2yuo_A           45 GELNGLRGWFPAKFVEV   61 (78)
T ss_dssp             EEETTEEEEEEGGGEEE
T ss_pred             EEECCCEEEEehHHEEE
Confidence            44678899999999986

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=1.1e-07  Score=56.31  Aligned_cols=17  Identities=53%  Similarity=0.935  Sum_probs=13.9

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        55 g~~~g~~G~~P~~yv~~   71 (78)
T 2ed0_A           55 GVMNGVTGLFPGNYVES   71 (78)
T ss_dssp             EEETTEEEEEETTSEEE
T ss_pred             EEECCcEEEeChHHEEE
Confidence            34567899999999985

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=98.61  E-value=7.1e-08  Score=55.52  Aligned_cols=17  Identities=41%  Similarity=1.007  Sum_probs=13.9

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        45 g~~~g~~G~~P~~yv~~   61 (68)
T 2dl3_A           45 GEHHGRVGIFPRTYIEL   61 (68)
T ss_dssp             EECSSCEEEEETTTEEE
T ss_pred             EEECCCEEEEchHHEEE
Confidence            34567899999999986

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=98.61  E-value=5.4e-08  Score=54.63  Aligned_cols=38  Identities=26%  Similarity=0.560  Sum_probs=29.2

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEe
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQF  153 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~  153 (162)
                      +.-+.|-+-...-+.+++||.|+.+|+.|+||++||+.
T Consensus        23 Ls~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   60 (60)
T 2gnc_A           23 LSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV   60 (60)
T ss_dssp             CCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEC
T ss_pred             cCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEEC
Confidence            33445655544445588999999999999999999984

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=98.61  E-value=6.4e-08  Score=58.04  Aligned_cols=16  Identities=44%  Similarity=0.702  Sum_probs=13.8

Q ss_pred             EecCCCCceeeeeEEe
Q psy9673         115 EVNGTTGAFPMSYVQI  130 (162)
Q Consensus       115 ~~~~~~G~~P~~~v~~  130 (162)
                      +.+|+.|+||++||+.
T Consensus        56 ~~~g~~G~~P~~yv~~   71 (83)
T 1neg_A           56 EVNDRQGFVPAAYVKK   71 (83)
T ss_dssp             EETTEEEEEEGGGEEE
T ss_pred             EECCeEEEEEHHHEEE
Confidence            4578899999999986

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=5.4e-08  Score=56.51  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=22.0

Q ss_pred             cCCCeEEEEecCCCCceeeeeEEe
Q psy9673         107 IDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       107 ~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      .+++||.|+.+|+.|+||++||+.
T Consensus        41 ~~~~Ww~g~~~g~~G~~P~~yv~~   64 (71)
T 2cre_A           41 ESEGWWKCLLHGRQGLAPANRLQI   64 (71)
T ss_dssp             TSTTEEEEESSSCCEEEETTTEEE
T ss_pred             CCCCcEEEEECCCEEEEehHHEEE
Confidence            478999999999999999999986

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.61  E-value=2.9e-08  Score=57.44  Aligned_cols=17  Identities=35%  Similarity=0.817  Sum_probs=14.2

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        45 g~~~g~~G~~P~~yv~~   61 (69)
T 1uhf_A           45 GSIGDRSGIFPSNYVKP   61 (69)
T ss_dssp             ECSTTCCEEECGGGCEE
T ss_pred             EEeCCcEEEEchHHeEE
Confidence            34578999999999986

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=98.60  E-value=6.7e-08  Score=55.50  Aligned_cols=15  Identities=33%  Similarity=0.536  Sum_probs=12.9

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||++||+.
T Consensus        43 ~~g~~G~~P~~yv~~   57 (67)
T 1gl5_A           43 KYGSEGYIPSNYVTG   57 (67)
T ss_dssp             SSSCEEEEETTSEES
T ss_pred             CCCCEEEEEhHhEEE
Confidence            467889999999986

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=98.60  E-value=7.7e-08  Score=54.79  Aligned_cols=17  Identities=35%  Similarity=0.747  Sum_probs=14.2

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        45 g~~~g~~G~~P~~yv~~   61 (65)
T 3u23_A           45 GTLNNKLGLFPSNFVKE   61 (65)
T ss_dssp             EEETTEEEEEEGGGEEE
T ss_pred             EEECCCEEEeehHHEEE
Confidence            45678899999999985

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=6.7e-08  Score=55.65  Aligned_cols=15  Identities=27%  Similarity=0.326  Sum_probs=12.6

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||++||+.
T Consensus        47 ~~g~~G~~P~~yv~~   61 (68)
T 1x2p_A           47 RAGCCGYIPANHVGK   61 (68)
T ss_dssp             CTTCCEEEESSSEEC
T ss_pred             ECCeEEEEehHHeEE
Confidence            347899999999985

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=98.59  E-value=6.7e-08  Score=54.22  Aligned_cols=20  Identities=50%  Similarity=1.210  Sum_probs=18.5

Q ss_pred             eEEEEecCCCCceeeeeEEe
Q psy9673         111 WFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       111 w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ||.|+.+|+.|+||++||+.
T Consensus        40 Ww~g~~~g~~G~~P~~yv~~   59 (60)
T 1oot_A           40 WWTGRVNGREGIFPANYVEL   59 (60)
T ss_dssp             EEEEEETTEEEEEEGGGEEE
T ss_pred             eEEEEECCEEEEEeHHHEEE
Confidence            89999999999999999974

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=98.59  E-value=3.1e-08  Score=57.26  Aligned_cols=23  Identities=35%  Similarity=0.887  Sum_probs=20.6

Q ss_pred             CCCeEEEEe-cCCCCceeeeeEEe
Q psy9673         108 DNNWFYGEV-NGTTGAFPMSYVQI  130 (162)
Q Consensus       108 ~~~w~~g~~-~~~~G~~P~~~v~~  130 (162)
                      +++||.|+. +|+.|+||+|||+.
T Consensus        45 ~~gWW~g~~~~G~~G~~PsnyV~~   68 (69)
T 1nm7_A           45 DSDWWKVRTKNGNIGYIPYNYIEI   68 (69)
T ss_dssp             SSSCEEEEETTTEEEEECGGGEEE
T ss_pred             CCCeeEEEeCCCCEEEecHHHEEE
Confidence            568999998 89999999999974

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=98.59  E-value=7.2e-08  Score=53.70  Aligned_cols=37  Identities=30%  Similarity=0.469  Sum_probs=28.4

Q ss_pred             CCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673         118 GTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       118 ~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      -+.|-+-...-+.+++||.|+.+|+.|+||++||+++
T Consensus        22 ~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A           22 FKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             BCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            3445544433344789999999999999999999975

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=98.59  E-value=9.8e-08  Score=53.09  Aligned_cols=39  Identities=26%  Similarity=0.375  Sum_probs=29.5

Q ss_pred             cCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673         117 NGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus       117 ~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      .-+.|-+-...-+.+++||.|+.+|+.|+||++||+.+.
T Consensus        19 s~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A           19 SLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             CBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEECC
Confidence            334455444344447899999999999999999999864

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.59  E-value=3.2e-08  Score=57.75  Aligned_cols=20  Identities=45%  Similarity=1.026  Sum_probs=19.0

Q ss_pred             eEEEEecCCCCceeeeeEEe
Q psy9673         111 WFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       111 w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ||.|+.+|+.|+||++||+.
T Consensus        46 Ww~g~~~g~~G~~P~~yv~~   65 (72)
T 1ugv_A           46 WLEGTLNGKTGLIPENYVEF   65 (72)
T ss_dssp             EEEEESSSCEEEEEGGGEEE
T ss_pred             eEEEEECCcEEEecHHHEEE
Confidence            99999999999999999986

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=98.58  E-value=7.5e-08  Score=54.31  Aligned_cols=15  Identities=40%  Similarity=0.778  Sum_probs=12.5

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||++||+.
T Consensus        46 ~~g~~G~~P~~yv~~   60 (62)
T 3ngp_A           46 VNGRQGFVPAAYLKK   60 (62)
T ss_dssp             ETTEEEEEEGGGEEE
T ss_pred             ECCEEEEEEHHHEEE
Confidence            357889999999974

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=98.58  E-value=5.9e-09  Score=77.44  Aligned_cols=48  Identities=23%  Similarity=0.504  Sum_probs=0.0

Q ss_pred             eEeeeec-------cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          83 FIRFFLN-------ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        83 ~~~~~~~-------~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      .++++|+       ..+|+|.+||+|.|+.+.+++||.|+++|+.|+||+|||++
T Consensus       249 ~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~  303 (308)
T 3qwy_A          249 KAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRF  303 (308)
T ss_dssp             -------------------------------------------------------
T ss_pred             ccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEECCeeEEechHHeEE
Confidence            4566665       37899999999999999889999999999999999999985

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=4.7e-08  Score=58.89  Aligned_cols=21  Identities=38%  Similarity=0.871  Sum_probs=19.9

Q ss_pred             CeEEEEecCCCCceeeeeEEe
Q psy9673         110 NWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       110 ~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      +||.|+.+|+.|+||++||+.
T Consensus        44 ~Ww~g~~~g~~G~fP~~yv~~   64 (85)
T 2dlp_A           44 GWQFGSAGGRSGLFPADIVQP   64 (85)
T ss_dssp             TEEEEESSSCEEEEETTSEEE
T ss_pred             CeEEEEECCEEEEechHHeEE
Confidence            699999999999999999986

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.58  E-value=2.4e-07  Score=55.37  Aligned_cols=53  Identities=23%  Similarity=0.218  Sum_probs=41.8

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCCCCCC
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLPIIN  161 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~~~~~  161 (162)
                      ..++.+.+|+++.|+.+.|..          |        ..+.|| ..-+|++|++|++|||++.+.++++
T Consensus        31 ~~dl~l~~GdlVAVl~k~Dp~----------G--------n~srW~-Vdtgg~~GyvPs~yLe~~~~~~~~~   83 (92)
T 1ug1_A           31 DLDVSLLEGDLVGVIKKKDPM----------G--------SQNRWL-IDNGVTKGFVYSSFLKPYNPRRSHS   83 (92)
T ss_dssp             SSCCCCCTTCEEEEEESCCTT----------S--------CSSEEE-EECSSSEEEEEGGGEEECCCCSSCC
T ss_pred             ceeeeecCCCEEEEEecCCCC----------C--------CCcceE-EECCCcEEeeEhhhceEcccCCCcc
Confidence            568999999999999998751          1        123455 5569999999999999999887754

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=98.57  E-value=8.9e-08  Score=55.69  Aligned_cols=15  Identities=40%  Similarity=0.984  Sum_probs=12.7

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||++||+.
T Consensus        53 ~~g~~G~~P~~yv~~   67 (72)
T 4glm_A           53 LKGRTGIFPYRFVKL   67 (72)
T ss_dssp             ETTEEEEEEGGGEEE
T ss_pred             ECCcEEEEChHHeEE
Confidence            457889999999975

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=98.57  E-value=6.9e-08  Score=56.10  Aligned_cols=14  Identities=36%  Similarity=0.702  Sum_probs=12.1

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      .|+.|+||++||+.
T Consensus        49 ~g~~G~fP~~yv~~   62 (71)
T 2fpf_A           49 TGARGVFPAYYAIE   62 (71)
T ss_dssp             TTEEEEEEGGGEEE
T ss_pred             CCCEEEeehHHEEE
Confidence            56789999999975

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=3.8e-08  Score=57.89  Aligned_cols=17  Identities=29%  Similarity=0.612  Sum_probs=14.4

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        53 g~~~g~~G~fP~~yv~~   69 (75)
T 2ege_A           53 GELGGHRGLVPAHLLDH   69 (75)
T ss_dssp             EESSSCEEEEETTTEEE
T ss_pred             EEECCcEEEEChHHeEE
Confidence            55678899999999975

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=98.57  E-value=8e-08  Score=55.33  Aligned_cols=40  Identities=25%  Similarity=0.428  Sum_probs=30.5

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECC-----eEEeecCCCeEecc
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNG-----TTGAFPMSYVQFVW  155 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g-----~~g~~p~~~~~~~~  155 (162)
                      +.-+.|-+-.-.-+.+++||.|+..|     +.|+||++||++++
T Consensus        24 Lsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~~   68 (68)
T 1tg0_A           24 LNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQG   68 (68)
T ss_dssp             CCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEECC
T ss_pred             CCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEECC
Confidence            44455655544445689999999976     99999999999863

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=9.5e-08  Score=55.01  Aligned_cols=16  Identities=38%  Similarity=0.634  Sum_probs=13.3

Q ss_pred             EecCCCCceeeeeEEe
Q psy9673         115 EVNGTTGAFPMSYVQI  130 (162)
Q Consensus       115 ~~~~~~G~~P~~~v~~  130 (162)
                      +.+|+.|+||++||+.
T Consensus        46 ~~~g~~G~~P~~yv~~   61 (68)
T 1x2k_A           46 TSKGRTGLIPSNYVAE   61 (68)
T ss_dssp             ESSSCEEEEETTTEEE
T ss_pred             EECCcEEEEehHHeEE
Confidence            3467899999999986

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=98.57  E-value=7.2e-08  Score=55.02  Aligned_cols=40  Identities=13%  Similarity=0.229  Sum_probs=30.3

Q ss_pred             ecCCCCceeeeeEEecCCeEEEE--ECCeEEeecCCCeEecc
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGE--VNGTTGAFPMSYVQFVW  155 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~--~~g~~g~~p~~~~~~~~  155 (162)
                      +.-+.|-+-...-+.+++||.|+  .+|+.|+||++||+++.
T Consensus        23 Ls~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A           23 ISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             CCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            33445655444445588999999  68999999999999875

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=9.4e-08  Score=57.00  Aligned_cols=17  Identities=35%  Similarity=0.890  Sum_probs=13.9

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        48 g~~~g~~G~~P~~yv~~   64 (81)
T 2ysq_A           48 GQIDDEEGWFPASFVRL   64 (81)
T ss_dssp             EECSSCEEEEEGGGEEE
T ss_pred             EEECCCEEEechHHEEE
Confidence            44557899999999986

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=98.55  E-value=1e-07  Score=55.53  Aligned_cols=38  Identities=26%  Similarity=0.484  Sum_probs=29.7

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEe
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQF  153 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~  153 (162)
                      +.-+.|-+-...-+.+++||.|+.+|+.|+||++||++
T Consensus        34 Lsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           34 LTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             CCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             cCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            34445655544445688999999999999999999986

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=98.54  E-value=1.1e-07  Score=53.01  Aligned_cols=36  Identities=31%  Similarity=0.466  Sum_probs=27.7

Q ss_pred             CCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEe
Q psy9673         118 GTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQF  153 (162)
Q Consensus       118 ~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~  153 (162)
                      -+.|-+-...-+.+++||.|+.+|+.|+||++||++
T Consensus        22 ~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A           22 FEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             BCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             CCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            344544443334578999999999999999999986

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=98.54  E-value=6.1e-08  Score=56.62  Aligned_cols=21  Identities=43%  Similarity=1.102  Sum_probs=19.8

Q ss_pred             CeEEEEecCCCCceeeeeEEe
Q psy9673         110 NWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       110 ~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      +||.|+.+|+.|+||++||+.
T Consensus        45 ~W~~g~~~g~~G~~P~~yv~~   65 (73)
T 2k9g_A           45 GWWEGELNGRRGVFPDNFVKL   65 (73)
T ss_dssp             TEEEEEETTEEEEEEGGGEEE
T ss_pred             CEEEEEECCeEEEEchHHEEE
Confidence            699999999999999999986

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.54  E-value=5.5e-08  Score=75.62  Aligned_cols=57  Identities=21%  Similarity=0.576  Sum_probs=49.0

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE--ecCCCCceeeeeEEe-----cCCeEEEEEC
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQI-----DNNWFYGEVN  140 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~--~~~~~G~~P~~~v~~-----~~~w~~g~~~  140 (162)
                      .+.++|+     ..+++|++||++.++++ +++||.|+  .+|+.|+||+|||+.     .+.|+.|.+.
T Consensus        10 ~~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~~~le~~~W~~g~i~   78 (454)
T 1qcf_A           10 IVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSLETEEWFFKGIS   78 (454)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTCGGGSTTEETTCC
T ss_pred             EEEECcccCCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhcccccccccccccccccc
Confidence            4677777     78999999999999988 57899999  688999999999985     5789998773

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=98.54  E-value=7.5e-08  Score=55.93  Aligned_cols=15  Identities=40%  Similarity=0.640  Sum_probs=12.8

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||++||+.
T Consensus        53 ~~g~~G~~P~~yv~~   67 (71)
T 1csk_A           53 KVGREGIIPANYVQK   67 (71)
T ss_dssp             TTSCEEEEETTSEEC
T ss_pred             CCCCEEEEehHHeEE
Confidence            467889999999985

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=98.54  E-value=1.2e-07  Score=55.32  Aligned_cols=16  Identities=44%  Similarity=0.702  Sum_probs=13.5

Q ss_pred             EecCCCCceeeeeEEe
Q psy9673         115 EVNGTTGAFPMSYVQI  130 (162)
Q Consensus       115 ~~~~~~G~~P~~~v~~  130 (162)
                      +.+|+.|+||++||+.
T Consensus        44 ~~~g~~G~~P~~yv~~   59 (73)
T 3thk_A           44 EVNDRQGFVPAAYVKK   59 (73)
T ss_dssp             EETTEEEEEEGGGEEE
T ss_pred             EECCcEEEEehHHeEE
Confidence            4567889999999986

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=98.53  E-value=7.4e-08  Score=55.01  Aligned_cols=41  Identities=20%  Similarity=0.336  Sum_probs=29.8

Q ss_pred             cCCCCceeeeeEEecCCeEEEE-ECCeEEeecCCCeEeccCC
Q psy9673         117 NGTTGAFPMSYVQIDNNWFYGE-VNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       117 ~~~~G~~P~~~v~~~~~w~~g~-~~g~~g~~p~~~~~~~~~~  157 (162)
                      .-+.|-+-...-+.+++||.|+ .+|+.|+||++||++..+-
T Consensus        21 sf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   62 (65)
T 1b07_A           21 PFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHH   62 (65)
T ss_dssp             CBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC--
T ss_pred             CCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecCCC
Confidence            3344554443444578999999 7999999999999988653

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=98.53  E-value=9.8e-08  Score=53.90  Aligned_cols=39  Identities=21%  Similarity=0.318  Sum_probs=29.5

Q ss_pred             cCCCCceeeeeEEecCCeEEEE--ECCeEEeecCCCeEecc
Q psy9673         117 NGTTGAFPMSYVQIDNNWFYGE--VNGTTGAFPMSYVQFVW  155 (162)
Q Consensus       117 ~~~~G~~P~~~v~~~~~w~~g~--~~g~~g~~p~~~~~~~~  155 (162)
                      .-+.|-+-...-+.+++||.|+  .+|+.|+||++||+++.
T Consensus        21 s~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A           21 ELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             cCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            3344554444444588999999  58999999999999874

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=98.53  E-value=1.3e-07  Score=54.89  Aligned_cols=14  Identities=21%  Similarity=0.691  Sum_probs=12.5

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||++||+.
T Consensus        50 ~g~~G~~P~~yv~~   63 (71)
T 2jt4_A           50 SGKSGLVPAQFIEP   63 (71)
T ss_dssp             TCCEEEEEGGGEEE
T ss_pred             CCCeEEechHHeEE
Confidence            67889999999986

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=98.53  E-value=4.2e-08  Score=56.36  Aligned_cols=15  Identities=33%  Similarity=0.682  Sum_probs=12.9

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||+|||+.
T Consensus        51 ~~g~~G~fP~~yv~~   65 (67)
T 3rnj_A           51 KTKMRGWFPFSYTRV   65 (67)
T ss_dssp             TTCCEEEEEGGGEEE
T ss_pred             CCCCEEEEEHHHeEE
Confidence            467899999999975

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=98.52  E-value=6.6e-08  Score=53.67  Aligned_cols=37  Identities=22%  Similarity=0.424  Sum_probs=27.4

Q ss_pred             CCCCceeeeeEEecCCeEEEE-ECCeEEeecCCCeEec
Q psy9673         118 GTTGAFPMSYVQIDNNWFYGE-VNGTTGAFPMSYVQFV  154 (162)
Q Consensus       118 ~~~G~~P~~~v~~~~~w~~g~-~~g~~g~~p~~~~~~~  154 (162)
                      -+.|-+-...-+.+++||.|+ .+|+.|+||++||+++
T Consensus        20 ~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A           20 FKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             BCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             CCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            344554443444578999999 7999999999999864

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=98.52  E-value=3.3e-08  Score=58.45  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=31.2

Q ss_pred             cCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673         117 NGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       117 ~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~  157 (162)
                      .-+.|-+-...-+.+++||.|+.+|+.|+||++||+.+.+.
T Consensus         9 s~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   49 (77)
T 2jmc_A            9 TMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   49 (77)
T ss_dssp             CCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEECCCS
T ss_pred             CCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEEcCCC
Confidence            33445544444445889999999999999999999998653

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=98.52  E-value=1.1e-07  Score=56.30  Aligned_cols=15  Identities=27%  Similarity=0.417  Sum_probs=12.7

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||++||++
T Consensus        61 ~~g~~G~fP~nyV~~   75 (78)
T 1k1z_A           61 ATNEVGWFPCNRVHP   75 (78)
T ss_dssp             TTTEEEEECSTTEEE
T ss_pred             CCCCEEEEehHHeEE
Confidence            367889999999975

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=98.52  E-value=2.4e-07  Score=54.09  Aligned_cols=13  Identities=31%  Similarity=0.572  Sum_probs=11.6

Q ss_pred             CCCCceeeeeEEe
Q psy9673         118 GTTGAFPMSYVQI  130 (162)
Q Consensus       118 ~~~G~~P~~~v~~  130 (162)
                      |+.|+||++||+.
T Consensus        49 g~~G~~P~~yv~~   61 (73)
T 2lcs_A           49 SKTGLVPEEFVSY   61 (73)
T ss_dssp             SCEEEEESTTEEE
T ss_pred             CCEEEeeHHHEEE
Confidence            6789999999986

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.52  E-value=1.4e-07  Score=54.54  Aligned_cols=21  Identities=43%  Similarity=1.102  Sum_probs=19.7

Q ss_pred             CeEEEEecCCCCceeeeeEEe
Q psy9673         110 NWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       110 ~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      +||.|+.+|+.|+||++||+.
T Consensus        43 ~W~~g~~~g~~G~~P~~yv~~   63 (70)
T 2da9_A           43 GWWEGELNGRRGVFPDNFVKL   63 (70)
T ss_dssp             TEEEEECSSCEEEEEGGGEEE
T ss_pred             CeEEEEECCcEEEechHHeEE
Confidence            699999999999999999986

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=98.51  E-value=7.1e-08  Score=55.38  Aligned_cols=13  Identities=38%  Similarity=0.764  Sum_probs=11.6

Q ss_pred             CCCCceeeeeEEe
Q psy9673         118 GTTGAFPMSYVQI  130 (162)
Q Consensus       118 ~~~G~~P~~~v~~  130 (162)
                      |+.|+||++||+.
T Consensus        52 g~~G~~P~~yv~~   64 (67)
T 2kxc_A           52 KARGWFPSSYTKL   64 (67)
T ss_dssp             CCEEEEEGGGEEE
T ss_pred             CCEEEEehHHeEE
Confidence            6789999999985

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=1.2e-07  Score=55.06  Aligned_cols=15  Identities=13%  Similarity=0.091  Sum_probs=12.9

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||++||+.
T Consensus        50 ~~g~~G~~P~~yv~~   64 (71)
T 2gqi_A           50 RTDEQGLIVEDLVEE   64 (71)
T ss_dssp             TTCCEEEECTTSEEE
T ss_pred             CCCCEEEeeHHHEEE
Confidence            457889999999986

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=98.50  E-value=3.7e-08  Score=60.25  Aligned_cols=16  Identities=38%  Similarity=0.831  Sum_probs=13.6

Q ss_pred             EecCCCCceeeeeEEe
Q psy9673         115 EVNGTTGAFPMSYVQI  130 (162)
Q Consensus       115 ~~~~~~G~~P~~~v~~  130 (162)
                      +.+|+.|+||++||+.
T Consensus        57 ~~~g~~G~fPsnyV~~   72 (92)
T 2o2o_A           57 VLNGKTGMFPSNFIKE   72 (92)
T ss_dssp             EETTEECCBCSSSEEC
T ss_pred             EECCeEEEeehHHEEE
Confidence            3478899999999986

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=98.50  E-value=2.3e-07  Score=53.50  Aligned_cols=13  Identities=23%  Similarity=0.473  Sum_probs=11.5

Q ss_pred             CCCCceeeeeEEe
Q psy9673         118 GTTGAFPMSYVQI  130 (162)
Q Consensus       118 ~~~G~~P~~~v~~  130 (162)
                      |+.|+||++||+.
T Consensus        47 g~~G~~P~~yv~~   59 (69)
T 1ruw_A           47 SKEGWVPTAYMTP   59 (69)
T ss_dssp             SCEEEEEGGGEEE
T ss_pred             CCEEEEehHHeEE
Confidence            5789999999985

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=98.50  E-value=4e-07  Score=52.60  Aligned_cols=13  Identities=38%  Similarity=1.020  Sum_probs=11.4

Q ss_pred             CCCCceeeeeEEe
Q psy9673         118 GTTGAFPMSYVQI  130 (162)
Q Consensus       118 ~~~G~~P~~~v~~  130 (162)
                      |+.|+||++||+.
T Consensus        51 g~~G~~P~~yv~~   63 (70)
T 2ecz_A           51 SRQGIFPITYVDV   63 (70)
T ss_dssp             TEEEEECTTTEEE
T ss_pred             CCEEEEchHHEEE
Confidence            4789999999986

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=98.50  E-value=1.4e-07  Score=54.41  Aligned_cols=13  Identities=38%  Similarity=0.639  Sum_probs=11.2

Q ss_pred             CCCCceeeeeEEe
Q psy9673         118 GTTGAFPMSYVQI  130 (162)
Q Consensus       118 ~~~G~~P~~~v~~  130 (162)
                      |+.|+||++||+.
T Consensus        49 g~~G~~P~~yv~~   61 (69)
T 4esr_A           49 GQEGYFPANHVAS   61 (69)
T ss_dssp             TEEEEEEGGGEEE
T ss_pred             CCEEEEchHHeEE
Confidence            4679999999985

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=98.50  E-value=1.2e-07  Score=56.29  Aligned_cols=14  Identities=36%  Similarity=0.622  Sum_probs=12.1

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||++||+.
T Consensus        48 ~g~~G~~P~~yv~~   61 (79)
T 3cqt_A           48 TGETGYIPSIYLAP   61 (79)
T ss_dssp             TCCEEEEEGGGEEE
T ss_pred             CCCEEEeehHHeEE
Confidence            46789999999986

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=98.50  E-value=1.4e-07  Score=53.32  Aligned_cols=39  Identities=28%  Similarity=0.465  Sum_probs=29.7

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      +.-+.|-+-...-+.+++||.|+.+|+.|+||++||++.
T Consensus        22 Ls~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1uj0_A           22 LTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD   60 (62)
T ss_dssp             CCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEESC
T ss_pred             cCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEEe
Confidence            333455544444445889999999999999999999864

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.49  E-value=8.2e-08  Score=59.16  Aligned_cols=14  Identities=29%  Similarity=0.752  Sum_probs=12.5

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||++||+.
T Consensus        66 ~g~~G~~Psnyv~~   79 (96)
T 1wie_A           66 DGQRGLVPSNFVDF   79 (96)
T ss_dssp             TCCBCBCCTTSEEC
T ss_pred             CCCEEEEchHHEEE
Confidence            57899999999986

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=2e-07  Score=55.27  Aligned_cols=17  Identities=47%  Similarity=0.984  Sum_probs=13.8

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||.+||+.
T Consensus        45 g~~~g~~G~~P~~yv~~   61 (79)
T 2yun_A           45 GSLNGKKGHFPAAYVEE   61 (79)
T ss_dssp             EESSSCEEEECSTTEEE
T ss_pred             EEECCCEEEEEhHHeEE
Confidence            33467899999999986

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=98.49  E-value=2.2e-07  Score=52.71  Aligned_cols=39  Identities=38%  Similarity=0.857  Sum_probs=29.5

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEec
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFV  154 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~  154 (162)
                      +.-+.|-+-...-+.+++||.|+.  +|+.|+||++||+++
T Consensus        23 Ls~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A           23 VSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             CCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            334455544434444889999999  899999999999986

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=98.48  E-value=1.3e-07  Score=54.60  Aligned_cols=16  Identities=44%  Similarity=0.661  Sum_probs=13.1

Q ss_pred             EecCCCCceeeeeEEe
Q psy9673         115 EVNGTTGAFPMSYVQI  130 (162)
Q Consensus       115 ~~~~~~G~~P~~~v~~  130 (162)
                      +.+|+.|+||++||+.
T Consensus        47 ~~~g~~G~~P~~yv~~   62 (69)
T 2dil_A           47 ERNGQRGFVPGSYLEK   62 (69)
T ss_dssp             EETTEEEEEEGGGCCB
T ss_pred             EECCCEEEEehHHeEE
Confidence            3457889999999975

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=98.48  E-value=2.3e-07  Score=52.16  Aligned_cols=14  Identities=36%  Similarity=0.560  Sum_probs=10.5

Q ss_pred             cCCC-CceeeeeEEe
Q psy9673         117 NGTT-GAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~-G~~P~~~v~~  130 (162)
                      +++. |+||++||+.
T Consensus        44 ~g~~gG~~P~~yv~~   58 (61)
T 1y0m_A           44 GGKKQLWFPSNYVEE   58 (61)
T ss_dssp             TTEEEEEEEGGGEEE
T ss_pred             CCeEEEEEChHHcEE
Confidence            3455 4999999975

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.47  E-value=1.2e-07  Score=55.77  Aligned_cols=19  Identities=47%  Similarity=0.859  Sum_probs=16.4

Q ss_pred             EEEEecCCCCceeeeeEEe
Q psy9673         112 FYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       112 ~~g~~~~~~G~~P~~~v~~  130 (162)
                      |.|+.+|+.|+||++||+.
T Consensus        46 w~g~~~g~~G~~P~~yv~~   64 (76)
T 1ujy_A           46 WEGTLNGRTGWFPSNYVRE   64 (76)
T ss_dssp             EEEEETTEEEEECTTTSEE
T ss_pred             EEEEECCCEEEechHHEEE
Confidence            5677788999999999985

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=98.46  E-value=1.4e-07  Score=54.26  Aligned_cols=12  Identities=25%  Similarity=0.612  Sum_probs=10.2

Q ss_pred             CCCceeeeeEEe
Q psy9673         119 TTGAFPMSYVQI  130 (162)
Q Consensus       119 ~~G~~P~~~v~~  130 (162)
                      +.|+||++||+.
T Consensus        54 ~~G~~P~~yv~~   65 (68)
T 1s1n_A           54 NEGLVPRTYLEP   65 (68)
T ss_dssp             CEEEEESTTEEE
T ss_pred             CEEEEehHHeEE
Confidence            469999999975

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=98.46  E-value=1.5e-07  Score=53.55  Aligned_cols=38  Identities=21%  Similarity=0.345  Sum_probs=28.6

Q ss_pred             CCCCceeeeeEEecCCeEEEEEC--------CeEEeecCCCeEecc
Q psy9673         118 GTTGAFPMSYVQIDNNWFYGEVN--------GTTGAFPMSYVQFVW  155 (162)
Q Consensus       118 ~~~G~~P~~~v~~~~~w~~g~~~--------g~~g~~p~~~~~~~~  155 (162)
                      -+.|-+-.-.-+.+++||.|+..        |+.|+||++||+++.
T Consensus        20 ~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l~   65 (65)
T 2oaw_A           20 MKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD   65 (65)
T ss_dssp             BCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEECC
T ss_pred             CCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEcC
Confidence            34455444333448899999997        999999999999863

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=98.45  E-value=1.2e-07  Score=53.17  Aligned_cols=36  Identities=17%  Similarity=0.469  Sum_probs=27.1

Q ss_pred             CCCceeeeeEE-ecCCeEEEEE--CCeEEeecCCCeEec
Q psy9673         119 TTGAFPMSYVQ-IDNNWFYGEV--NGTTGAFPMSYVQFV  154 (162)
Q Consensus       119 ~~G~~P~~~v~-~~~~w~~g~~--~g~~g~~p~~~~~~~  154 (162)
                      +.|-+-.-.-+ .+++||.|+.  +|+.|+||++||+++
T Consensus        22 ~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A           22 KSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            34544333333 3789999999  999999999999975

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=2.4e-07  Score=53.74  Aligned_cols=17  Identities=29%  Similarity=0.339  Sum_probs=13.6

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+..|+.|+||++||+.
T Consensus        46 g~~~g~~G~~P~~yv~~   62 (71)
T 2dnu_A           46 IRYLGKEGWAPASYLKK   62 (71)
T ss_dssp             EEETTEEEEEEGGGCEE
T ss_pred             EEECCcEEEEEHHHeEE
Confidence            44447889999999986

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=2.6e-07  Score=54.77  Aligned_cols=14  Identities=36%  Similarity=0.833  Sum_probs=12.0

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||++||+.
T Consensus        59 ~g~~G~fP~~yv~~   72 (79)
T 1x6b_A           59 DGETGWFPEDFARF   72 (79)
T ss_dssp             TCCEEEECGGGCEE
T ss_pred             CCCEEEEchHHEEE
Confidence            46789999999975

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=98.44  E-value=1.5e-07  Score=54.75  Aligned_cols=13  Identities=38%  Similarity=0.764  Sum_probs=11.8

Q ss_pred             CCCCceeeeeEEe
Q psy9673         118 GTTGAFPMSYVQI  130 (162)
Q Consensus       118 ~~~G~~P~~~v~~  130 (162)
                      |+.|+||++||+.
T Consensus        53 g~~G~fP~~yv~~   65 (72)
T 1spk_A           53 KARGWFPSSYTKL   65 (72)
T ss_dssp             CCEEEEEGGGCEE
T ss_pred             CCEEEEehHHeEE
Confidence            7889999999986

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=98.44  E-value=2.3e-07  Score=54.07  Aligned_cols=38  Identities=24%  Similarity=0.310  Sum_probs=28.4

Q ss_pred             CCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEecc
Q psy9673         118 GTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFVW  155 (162)
Q Consensus       118 ~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~~  155 (162)
                      -+.|.+-...-+.+++||.|+.  +|+.|+||++||+++.
T Consensus        34 ~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   73 (73)
T 3h0h_A           34 FHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD   73 (73)
T ss_dssp             BCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEECC
Confidence            3445443333334789999999  8999999999999863

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.44  E-value=9.6e-08  Score=53.60  Aligned_cols=50  Identities=20%  Similarity=0.563  Sum_probs=40.4

Q ss_pred             CCccccccccccccCCCEEcccCC-----ccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPCQH-----TFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C~H-----~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ++...|.||++... ++.++||.+     .|+..||.+|+..++...||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            45668999998865 667788654     799999999998655569999998775

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=98.44  E-value=2.5e-07  Score=53.46  Aligned_cols=15  Identities=47%  Similarity=0.831  Sum_probs=12.8

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||++||+.
T Consensus        49 ~~g~~G~~P~~yv~~   63 (70)
T 2cuc_A           49 LTGRTGIFPSDYVIP   63 (70)
T ss_dssp             TTCCEEEEEGGGCEE
T ss_pred             CCCCEEEEchHHeEE
Confidence            457889999999985

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.44  E-value=3.4e-07  Score=53.96  Aligned_cols=15  Identities=40%  Similarity=0.778  Sum_probs=12.9

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||++||+.
T Consensus        52 ~~g~~G~~P~~yv~~   66 (77)
T 2enm_A           52 NKGEQGLVPTDYVEI   66 (77)
T ss_dssp             TTCCEEEEETTTEEE
T ss_pred             CCCCEEEeehHHeEE
Confidence            457889999999986

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.44  E-value=2.3e-07  Score=54.30  Aligned_cols=42  Identities=31%  Similarity=0.492  Sum_probs=30.6

Q ss_pred             cCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCCCC
Q psy9673         117 NGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLPI  159 (162)
Q Consensus       117 ~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~~~  159 (162)
                      .-+.|-+-...- .+++||.|+.+|+.|+||++||+.+.....
T Consensus        28 s~~~Gd~i~v~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   69 (74)
T 1j3t_A           28 NFSKHDIITVLE-QQENWWFGEVHGGRGWFPKSYVKIIPGSES   69 (74)
T ss_dssp             CBCTTCEEEEEE-ECSSEEEEESTTCCCEEEGGGEEECCCSTT
T ss_pred             CCCCCCEEEEEe-cCCCEEEEEECCcEEEEchHHeEECCCCCC
Confidence            334454433332 368999999999999999999999865443

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=98.43  E-value=1.1e-07  Score=54.96  Aligned_cols=12  Identities=33%  Similarity=0.492  Sum_probs=10.4

Q ss_pred             CCCceeeeeEEe
Q psy9673         119 TTGAFPMSYVQI  130 (162)
Q Consensus       119 ~~G~~P~~~v~~  130 (162)
                      +.|+||++||++
T Consensus        56 ~~G~fP~~yv~~   67 (70)
T 1gcq_C           56 EVGWFPCNRVHP   67 (70)
T ss_dssp             EEEEEEGGGEEE
T ss_pred             CEeEeehHHeEE
Confidence            579999999975

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=98.43  E-value=2.2e-07  Score=50.88  Aligned_cols=34  Identities=35%  Similarity=0.688  Sum_probs=25.2

Q ss_pred             CCCceeeeeEEec-CCeEEEEECCeEEeecCCCeE
Q psy9673         119 TTGAFPMSYVQID-NNWFYGEVNGTTGAFPMSYVQ  152 (162)
Q Consensus       119 ~~G~~P~~~v~~~-~~w~~g~~~g~~g~~p~~~~~  152 (162)
                      +.|-+-.-.-+.+ ++||.|+.+|+.|+||++||+
T Consensus        20 ~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A           20 DPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             CTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             CCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            3454433333334 699999999999999999986

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=98.43  E-value=2.8e-07  Score=51.23  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=27.6

Q ss_pred             CCCCceeeeeEEecCCeEEEEEC--CeEEeecCCCeEe
Q psy9673         118 GTTGAFPMSYVQIDNNWFYGEVN--GTTGAFPMSYVQF  153 (162)
Q Consensus       118 ~~~G~~P~~~v~~~~~w~~g~~~--g~~g~~p~~~~~~  153 (162)
                      -+.|-+-.-.-+.+++||.|+..  |+.|+||++||++
T Consensus        20 ~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A           20 LKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             BCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             CCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            34455444444458899999998  9999999999985

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=98.43  E-value=1.8e-07  Score=52.88  Aligned_cols=19  Identities=16%  Similarity=0.309  Sum_probs=15.8

Q ss_pred             EEEEecCCCCceeeeeEEe
Q psy9673         112 FYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       112 ~~g~~~~~~G~~P~~~v~~  130 (162)
                      |.|+.+|+.|+||++||+.
T Consensus        42 ~~~~~~g~~G~~P~~yv~~   60 (63)
T 3eg3_A           42 CEAQTKNGQGWVPSAYITP   60 (63)
T ss_dssp             EEEEETTEEEEEEGGGEEE
T ss_pred             EEEEECCCeEEEehHHeEE
Confidence            4667778899999999975

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=98.43  E-value=2.6e-07  Score=52.97  Aligned_cols=10  Identities=50%  Similarity=1.318  Sum_probs=6.3

Q ss_pred             CceeeeeEEe
Q psy9673         121 GAFPMSYVQI  130 (162)
Q Consensus       121 G~~P~~~v~~  130 (162)
                      |+||++||+.
T Consensus        53 G~~P~~yv~~   62 (67)
T 2o9s_A           53 GIFPITYVDV   62 (67)
T ss_dssp             EEEEGGGEEE
T ss_pred             EEEChHHeEE
Confidence            6666666653

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.42  E-value=8.3e-07  Score=52.66  Aligned_cols=13  Identities=38%  Similarity=0.608  Sum_probs=7.9

Q ss_pred             CCCCceeeeeEEe
Q psy9673         118 GTTGAFPMSYVQI  130 (162)
Q Consensus       118 ~~~G~~P~~~v~~  130 (162)
                      ++.|+||++||+.
T Consensus        54 ~~~G~fP~~yv~~   66 (80)
T 1ue9_A           54 RQKGWFPASHVKL   66 (80)
T ss_dssp             CCEEEEETTSEEE
T ss_pred             CcEEEEchHHeEE
Confidence            4556666666654

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.41  E-value=2.5e-07  Score=53.32  Aligned_cols=17  Identities=29%  Similarity=0.524  Sum_probs=12.3

Q ss_pred             EEecCCC-CceeeeeEEe
Q psy9673         114 GEVNGTT-GAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~-G~~P~~~v~~  130 (162)
                      |+..++. |+||++||+.
T Consensus        45 g~~~~~~~G~~P~~yv~~   62 (69)
T 2eqi_A           45 GDYGTRIQQYFPSNYVED   62 (69)
T ss_dssp             EEETTEEEEEECGGGEEE
T ss_pred             EEECCCCEEEEchHHcEE
Confidence            3344444 9999999986

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=98.41  E-value=1.8e-07  Score=58.85  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=31.6

Q ss_pred             ecCCCCceeeeeEEe-cC--CeEEEEEC--------CeEEeecCCCeEeccCCC
Q psy9673         116 VNGTTGAFPMSYVQI-DN--NWFYGEVN--------GTTGAFPMSYVQFVWYLP  158 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~-~~--~w~~g~~~--------g~~g~~p~~~~~~~~~~~  158 (162)
                      +.-+.|-+-..+-+. ++  +||.|+++        |++|+||+|||+.+..+.
T Consensus        39 Lsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~~~   92 (108)
T 1i1j_A           39 LTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLK   92 (108)
T ss_dssp             CCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECS
T ss_pred             cccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccccC
Confidence            444566655555442 33  49999998        999999999999987654

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=1.7e-07  Score=57.06  Aligned_cols=13  Identities=62%  Similarity=1.160  Sum_probs=11.5

Q ss_pred             CCCCceeeeeEEe
Q psy9673         118 GTTGAFPMSYVQI  130 (162)
Q Consensus       118 ~~~G~~P~~~v~~  130 (162)
                      |+.|+||++||+.
T Consensus        61 g~~G~fP~~yv~~   73 (90)
T 2yup_A           61 GRQGIFPASYVQV   73 (90)
T ss_dssp             CCEEEEEGGGEEE
T ss_pred             CCEEEEehHHeEE
Confidence            5789999999986

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=98.40  E-value=3.8e-07  Score=50.83  Aligned_cols=39  Identities=18%  Similarity=0.391  Sum_probs=29.3

Q ss_pred             cCCCCceeeeeEEecCCeEEEEEC--CeEEeecCCCeEecc
Q psy9673         117 NGTTGAFPMSYVQIDNNWFYGEVN--GTTGAFPMSYVQFVW  155 (162)
Q Consensus       117 ~~~~G~~P~~~v~~~~~w~~g~~~--g~~g~~p~~~~~~~~  155 (162)
                      .-+.|-+-.-.-+.+++||.|+..  |+.|+||++||+++.
T Consensus        19 s~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   59 (59)
T 1yn8_A           19 RLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ   59 (59)
T ss_dssp             CBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEECC
T ss_pred             CCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            334455444444558899999995  899999999999863

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=98.40  E-value=1.4e-07  Score=56.55  Aligned_cols=40  Identities=23%  Similarity=0.314  Sum_probs=29.0

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEEC------CeEEeecCCCeEecc
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVN------GTTGAFPMSYVQFVW  155 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~------g~~g~~p~~~~~~~~  155 (162)
                      +.-+.|-+-.-.-+.+++||.|++.      |++|+||++||+++.
T Consensus        36 Lsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           36 LNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             CCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             ccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            3344455443333347799999996      799999999999875

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=2.3e-07  Score=55.13  Aligned_cols=20  Identities=45%  Similarity=1.139  Sum_probs=18.9

Q ss_pred             eEEEEecCCCCceeeeeEEe
Q psy9673         111 WFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       111 w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ||.|+.+|+.|+||.+||+.
T Consensus        54 Ww~g~~~g~~G~~P~~yv~~   73 (80)
T 2d8h_A           54 WWEGKLRGQTGIFPANYVTM   73 (80)
T ss_dssp             EEEEEETTEEEEEEGGGCCB
T ss_pred             eEEEEECCEEEEEchhHeEE
Confidence            99999999999999999986

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=98.40  E-value=2.9e-07  Score=54.63  Aligned_cols=23  Identities=35%  Similarity=0.887  Sum_probs=20.4

Q ss_pred             CCCeEEEEe-cCCCCceeeeeEEe
Q psy9673         108 DNNWFYGEV-NGTTGAFPMSYVQI  130 (162)
Q Consensus       108 ~~~w~~g~~-~~~~G~~P~~~v~~  130 (162)
                      +++||.|+. +|+.|+||++||+.
T Consensus        52 ~~~Ww~g~~~~g~~G~~P~~yv~~   75 (80)
T 2v1r_A           52 DSDWWKVRTKNGNIGYIPYNYIEI   75 (80)
T ss_dssp             EEEEEEEECTTSCEEEEEGGGEEE
T ss_pred             CCCcEEEEeCCCCeEEEEHHHeEE
Confidence            458999998 89999999999975

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=98.39  E-value=4.2e-07  Score=55.46  Aligned_cols=23  Identities=35%  Similarity=0.887  Sum_probs=20.6

Q ss_pred             CCCeEEEEe-cCCCCceeeeeEEe
Q psy9673         108 DNNWFYGEV-NGTTGAFPMSYVQI  130 (162)
Q Consensus       108 ~~~w~~g~~-~~~~G~~P~~~v~~  130 (162)
                      +++||.|+. +|+.|+||++||+.
T Consensus        52 ~~gWw~g~~~~g~~G~~P~~yv~~   75 (92)
T 1jqq_A           52 DSDWWKVRTKNGNIGYIPYNYIEI   75 (92)
T ss_dssp             EEEEEEEEETTSCEEEEEGGGEEE
T ss_pred             CCCCeEEEeCCCCEEEEehHHeEE
Confidence            458999998 89999999999986

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=6.1e-07  Score=51.79  Aligned_cols=14  Identities=36%  Similarity=0.596  Sum_probs=12.0

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +++.|+||++||+.
T Consensus        50 ~g~~G~~P~~yv~~   63 (70)
T 2ct3_A           50 TQKFGTFPGNYVAP   63 (70)
T ss_dssp             SCCEEEECTTTEEE
T ss_pred             CCCEEEechHHeEE
Confidence            36789999999986

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=98.39  E-value=1.4e-07  Score=52.82  Aligned_cols=24  Identities=29%  Similarity=0.884  Sum_probs=21.1

Q ss_pred             cCCeEEEEEC-CeEEeecCCCeEec
Q psy9673         131 DNNWFYGEVN-GTTGAFPMSYVQFV  154 (162)
Q Consensus       131 ~~~w~~g~~~-g~~g~~p~~~~~~~  154 (162)
                      +++||.|+.+ |+.|+||++||+++
T Consensus        36 ~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D           36 EQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             SSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CCCceEEEeCCCCEEEecHHHEEEC
Confidence            3499999998 99999999999874

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.39  E-value=1.4e-07  Score=57.29  Aligned_cols=38  Identities=29%  Similarity=0.538  Sum_probs=28.6

Q ss_pred             ecCCCCceeeeeEE-----ecCCeEEEEE-CCeEEeecCCCeEe
Q psy9673         116 VNGTTGAFPMSYVQ-----IDNNWFYGEV-NGTTGAFPMSYVQF  153 (162)
Q Consensus       116 ~~~~~G~~P~~~v~-----~~~~w~~g~~-~g~~g~~p~~~~~~  153 (162)
                      +.-+.|-+-.-.-+     .+++||.|+. +|+.|+||++||++
T Consensus        46 Lsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           46 LTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             cccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            44445655443333     2789999999 99999999999985

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=98.38  E-value=2.3e-07  Score=54.33  Aligned_cols=25  Identities=36%  Similarity=0.836  Sum_probs=22.9

Q ss_pred             cCCeEEEEECCeEEeecCCCeEecc
Q psy9673         131 DNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus       131 ~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      +++||.|+.+|+.|+||++||+++.
T Consensus        42 ~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A           42 DQNWYKAELNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             CSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             CCCEEEEEECCCEEEEehHhEEEcC
Confidence            5689999999999999999999864

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=98.38  E-value=4.1e-07  Score=50.55  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=25.7

Q ss_pred             CCCceeeeeEEec-CCeEEEEE--CCeEEeecCCCeEe
Q psy9673         119 TTGAFPMSYVQID-NNWFYGEV--NGTTGAFPMSYVQF  153 (162)
Q Consensus       119 ~~G~~P~~~v~~~-~~w~~g~~--~g~~g~~p~~~~~~  153 (162)
                      +.|-+-...-+.+ ++||.|+.  +|+.|+||++||+.
T Consensus        21 ~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~~   58 (58)
T 1zuu_A           21 TPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   58 (58)
T ss_dssp             CTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEEC
Confidence            3444333333334 79999999  99999999999984

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=98.37  E-value=1.7e-07  Score=52.52  Aligned_cols=26  Identities=15%  Similarity=0.442  Sum_probs=23.5

Q ss_pred             cCCeEEEE-ECCeEEeecCCCeEeccC
Q psy9673         131 DNNWFYGE-VNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       131 ~~~w~~g~-~~g~~g~~p~~~~~~~~~  156 (162)
                      +++||.|+ .+|+.|+||++||+++.+
T Consensus        32 ~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A           32 RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            89999998 589999999999998854

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=98.37  E-value=3.3e-07  Score=55.80  Aligned_cols=15  Identities=33%  Similarity=0.720  Sum_probs=12.8

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||.+||+.
T Consensus        60 ~~g~~G~~P~~yv~~   74 (91)
T 1wx6_A           60 ARGQVGLVPKNYVVV   74 (91)
T ss_dssp             TTCCEEEEEGGGEEE
T ss_pred             CCCCEEEEchHHEEE
Confidence            457889999999986

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=98.35  E-value=7.8e-07  Score=58.66  Aligned_cols=41  Identities=24%  Similarity=0.473  Sum_probs=31.5

Q ss_pred             ecCCCCceeeeeEEe-cCCeEEEEECCeEEeecCCCeEeccC
Q psy9673         116 VNGTTGAFPMSYVQI-DNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~-~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      +.-+.|-+-...-+. +++||.|+.+|+.|+||++||+.+..
T Consensus        22 Lsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A           22 LSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             CCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSC
T ss_pred             CCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEccc
Confidence            444556655444443 78999999999999999999999854

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=98.34  E-value=2.3e-07  Score=52.37  Aligned_cols=24  Identities=21%  Similarity=0.656  Sum_probs=21.6

Q ss_pred             cCCeEEEE--ECCeEEeecCCCeEec
Q psy9673         131 DNNWFYGE--VNGTTGAFPMSYVQFV  154 (162)
Q Consensus       131 ~~~w~~g~--~~g~~g~~p~~~~~~~  154 (162)
                      +++||.|+  .+|+.|+||++||+++
T Consensus        37 ~~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A           37 SGEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             CSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCCEEEEEECCCCCEEEEEHHHEEEC
Confidence            56999999  5899999999999974

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=98.34  E-value=1.2e-07  Score=54.94  Aligned_cols=12  Identities=50%  Similarity=0.916  Sum_probs=10.2

Q ss_pred             CCCceeeeeEEe
Q psy9673         119 TTGAFPMSYVQI  130 (162)
Q Consensus       119 ~~G~~P~~~v~~  130 (162)
                      +.|+||++||+.
T Consensus        50 ~~G~~P~~yv~~   61 (70)
T 2vkn_A           50 ETGIIPSNYVQL   61 (70)
T ss_dssp             CEEEEEGGGEEE
T ss_pred             CEEEEehHHEEE
Confidence            469999999975

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=98.33  E-value=2.7e-07  Score=53.05  Aligned_cols=12  Identities=17%  Similarity=0.390  Sum_probs=10.3

Q ss_pred             CCCceeeeeEEe
Q psy9673         119 TTGAFPMSYVQI  130 (162)
Q Consensus       119 ~~G~~P~~~v~~  130 (162)
                      +.|+||++||+.
T Consensus        50 ~~G~~P~~yv~~   61 (68)
T 1wxt_A           50 RSGYIPSNILEP   61 (68)
T ss_dssp             CEEEEEGGGEEC
T ss_pred             CEEEEEhHHcEE
Confidence            469999999986

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.33  E-value=7.2e-07  Score=51.79  Aligned_cols=14  Identities=29%  Similarity=0.577  Sum_probs=11.9

Q ss_pred             cCCC---CceeeeeEEe
Q psy9673         117 NGTT---GAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~---G~~P~~~v~~  130 (162)
                      +|+.   |+||++||+.
T Consensus        53 ~g~~~~~G~~P~~yv~~   69 (72)
T 2kgt_A           53 AGGAVAQGYVPHNYLAE   69 (72)
T ss_dssp             TSCEEEEEEECTTTSEE
T ss_pred             CCCEeCCcEEcHhHEEE
Confidence            4778   9999999975

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=98.33  E-value=8.9e-08  Score=55.61  Aligned_cols=10  Identities=40%  Similarity=0.544  Sum_probs=8.6

Q ss_pred             CceeeeeEEe
Q psy9673         121 GAFPMSYVQI  130 (162)
Q Consensus       121 G~~P~~~v~~  130 (162)
                      |+||++||+.
T Consensus        52 G~~P~~yv~~   61 (71)
T 1hsq_A           52 LWFPSNYVEE   61 (71)
T ss_dssp             CCEETTTCCS
T ss_pred             eEEChHHcEE
Confidence            6999999975

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.32  E-value=8.4e-07  Score=52.19  Aligned_cols=10  Identities=40%  Similarity=0.693  Sum_probs=7.4

Q ss_pred             CceeeeeEEe
Q psy9673         121 GAFPMSYVQI  130 (162)
Q Consensus       121 G~~P~~~v~~  130 (162)
                      |+||++||+.
T Consensus        61 G~~P~~yv~~   70 (77)
T 2d8j_A           61 GYIPSNYVAE   70 (77)
T ss_dssp             EEEETTTEEE
T ss_pred             eEECHHHeeE
Confidence            7777777765

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=98.32  E-value=2.6e-07  Score=58.03  Aligned_cols=41  Identities=17%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeE---EeecCCCeEeccC
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTT---GAFPMSYVQFVWY  156 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~---g~~p~~~~~~~~~  156 (162)
                      +.-+.|-+-...-+.+++||.|+++|+.   |+||++||+.+..
T Consensus        22 Lsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~   65 (108)
T 2rqv_A           22 LTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDI   65 (108)
T ss_dssp             CCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCS
T ss_pred             CCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecC
Confidence            4445565544444568999999998877   9999999998753

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=4.1e-07  Score=55.73  Aligned_cols=24  Identities=29%  Similarity=0.854  Sum_probs=21.6

Q ss_pred             cCCCeEEEE--ecCCCCceeeeeEEe
Q psy9673         107 IDNNWFYGE--VNGTTGAFPMSYVQI  130 (162)
Q Consensus       107 ~~~~w~~g~--~~~~~G~~P~~~v~~  130 (162)
                      .+++||.|+  .+|+.|+||++||+.
T Consensus        51 ~~~gWw~g~~~~~g~~G~fP~~yv~~   76 (94)
T 2e5k_A           51 TSEGWIYGTSLTTGCSGLLPENYITK   76 (94)
T ss_dssp             TTTTEEEEEESSSCCEEEEEGGGEEE
T ss_pred             CCCCcEEEEECCCCCEEEechHHeEE
Confidence            367999999  789999999999987

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=98.30  E-value=1.1e-07  Score=54.60  Aligned_cols=38  Identities=21%  Similarity=0.296  Sum_probs=28.2

Q ss_pred             CCCceeeeeEEecCCeEEEE-ECCeEEeecCCCeEeccC
Q psy9673         119 TTGAFPMSYVQIDNNWFYGE-VNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       119 ~~G~~P~~~v~~~~~w~~g~-~~g~~g~~p~~~~~~~~~  156 (162)
                      +.|-+-.-.-+.+++||.|+ .+|+.|+||++||+++++
T Consensus        28 ~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   66 (67)
T 1aww_A           28 RKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcCC
Confidence            34443333333478999999 799999999999998764

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=98.27  E-value=1.4e-06  Score=52.37  Aligned_cols=14  Identities=29%  Similarity=0.491  Sum_probs=12.1

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||++||+.
T Consensus        67 ~g~~G~~P~~yv~~   80 (86)
T 2oi3_A           67 TRKEGYIPSNYVAR   80 (86)
T ss_dssp             TCCEEEEEGGGEEE
T ss_pred             CCCEEEEehHHcEE
Confidence            46789999999985

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=98.25  E-value=5.8e-07  Score=52.49  Aligned_cols=27  Identities=26%  Similarity=0.641  Sum_probs=24.1

Q ss_pred             cCCeEEEEE---CCeEEeecCCCeEeccCC
Q psy9673         131 DNNWFYGEV---NGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       131 ~~~w~~g~~---~g~~g~~p~~~~~~~~~~  157 (162)
                      +++||.|+.   +|+.|+||++||+.+...
T Consensus        42 ~~~W~~g~~~~~~g~~G~~P~~yv~~~~~~   71 (74)
T 2m0y_A           42 YEGWYRGYTLRKKSKKGIFPASYIHLKEAI   71 (74)
T ss_dssp             SSSCEEEEESSCSSCCEEECGGGEEECCCC
T ss_pred             CCCeEEEEECCCCCCEEEEehHHEEEeccc
Confidence            688999999   899999999999987654

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=98.25  E-value=2.8e-07  Score=56.08  Aligned_cols=22  Identities=32%  Similarity=0.676  Sum_probs=19.3

Q ss_pred             CCeEEEEe--cCCCCceeeeeEEe
Q psy9673         109 NNWFYGEV--NGTTGAFPMSYVQI  130 (162)
Q Consensus       109 ~~w~~g~~--~~~~G~~P~~~v~~  130 (162)
                      .+||.|+.  +|+.|+||++||+.
T Consensus        59 ~gW~~G~~~~~g~~G~fP~nyVe~   82 (90)
T 3o5z_A           59 VGWMPGLNERTRQRGDFPGTYVEF   82 (90)
T ss_dssp             HCEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCceEEEeCCCCCEEEeehHHEEE
Confidence            38999986  68999999999985

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=6.1e-07  Score=51.56  Aligned_cols=14  Identities=21%  Similarity=0.420  Sum_probs=12.2

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||++||+.
T Consensus        48 ~g~~G~~P~~yv~~   61 (68)
T 1wxb_A           48 SGQAGYVPCNILGE   61 (68)
T ss_dssp             TSCEEEEETTTCCB
T ss_pred             CCCEEEEEHHHeEE
Confidence            57889999999975

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.23  E-value=6.1e-07  Score=66.17  Aligned_cols=39  Identities=18%  Similarity=0.289  Sum_probs=34.1

Q ss_pred             eeeccCCCEEEEeEecCCCeEEEEecC------CCCceeeeeEEe
Q psy9673          92 DLNFKKDDIVILRRKIDNNWFYGEVNG------TTGAFPMSYVQI  130 (162)
Q Consensus        92 el~~~~gd~i~v~~~~~~~w~~g~~~~------~~G~~P~~~v~~  130 (162)
                      +|+|++||++.|+++.+.+||.|+..+      +.|+||+||++.
T Consensus        22 eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e   66 (295)
T 1kjw_A           22 ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (295)
T ss_dssp             BCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             CCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHH
Confidence            899999999999999999999999653      668999888864

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.23  E-value=1.4e-07  Score=74.08  Aligned_cols=46  Identities=28%  Similarity=0.579  Sum_probs=0.0

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCC-CeEEEEec-CCCCceeeeeE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDN-NWFYGEVN-GTTGAFPMSYV  128 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~-~w~~g~~~-~~~G~~P~~~v  128 (162)
                      .++++|+     ..+|+|.+||+|.|+.+.++ +||.|+.. |+.|+||++||
T Consensus       430 ~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv  482 (486)
T 3haj_A          430 RVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYV  482 (486)
T ss_dssp             -----------------------------------------------------
T ss_pred             EEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHc
Confidence            4677877     77899999999998877543 55555443 34444444443

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=98.23  E-value=7.5e-07  Score=54.08  Aligned_cols=29  Identities=21%  Similarity=0.287  Sum_probs=24.3

Q ss_pred             ecCCeEEEEE--CCeEEeecCCCeEeccCCC
Q psy9673         130 IDNNWFYGEV--NGTTGAFPMSYVQFVWYLP  158 (162)
Q Consensus       130 ~~~~w~~g~~--~g~~g~~p~~~~~~~~~~~  158 (162)
                      .+++||.|+.  +|+.|+||++||+.+....
T Consensus        33 ~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   63 (90)
T 3reb_B           33 ESGEWWKARSLATRKEGYIPSNYVARVDSGG   63 (90)
T ss_dssp             CSSSEEEEEETTTCCEEEEEGGGEEEECC--
T ss_pred             eCCCEEEEEECCCCCEEEEehhheEECCCCC
Confidence            3678999998  8999999999999986543

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.22  E-value=6.3e-07  Score=54.57  Aligned_cols=46  Identities=26%  Similarity=0.644  Sum_probs=37.3

Q ss_pred             ccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673          11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        11 ~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      .|++|.--+..-.+.+||.|.||+.|...+...+ ...||.|+.++.
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~-~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG-DKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT-CCBCTTTCCBCS
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc-CCCCcCcCCeee
Confidence            4788877776567899999999999999887543 248999999875

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=98.22  E-value=7.6e-07  Score=54.41  Aligned_cols=24  Identities=33%  Similarity=0.786  Sum_probs=21.3

Q ss_pred             cCCCeEEEEecCC-CCceeeeeEEe
Q psy9673         107 IDNNWFYGEVNGT-TGAFPMSYVQI  130 (162)
Q Consensus       107 ~~~~w~~g~~~~~-~G~~P~~~v~~  130 (162)
                      .+++||.|+++++ .|+||.+||+.
T Consensus        52 ~~~gWw~g~~~~~~~G~~P~~yv~~   76 (93)
T 1wxu_A           52 KVRGWLLASLDGQTTGLIPANYVKI   76 (93)
T ss_dssp             SCSSCEEEESSSSSCEEECSTTEEE
T ss_pred             CCCCcEEEEeCCcCEEEEehHHEEE
Confidence            3678999998888 99999999986

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.21  E-value=2.1e-06  Score=60.93  Aligned_cols=50  Identities=16%  Similarity=0.352  Sum_probs=36.3

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCCCC
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLPI  159 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~~~  159 (162)
                      ..++.+..|+.+.++.+.+.+                    +.+||.|+.+|+.|+||.+||+......+
T Consensus       184 ~~eLa~~~G~~i~vl~~~~~~--------------------~~~Ww~~~~~~~~G~~P~~yv~~~~~~~~  233 (239)
T 1ycs_B          184 DDELPMKEGDCMTIIHREDED--------------------EIEWWWARLNDKEGYVPRNLLGLYPRIKP  233 (239)
T ss_dssp             TTBCCBCSSCEEEECCCCTTS--------------------CSSEEEEEETTEEEEEEGGGEECCC----
T ss_pred             CCcccccCCCEEEEEEecCCC--------------------CCCEEEEEECCcEEEeehHHeeECCcCCc
Confidence            667889999999888775542                    23588888889999999999987754443

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.21  E-value=4e-07  Score=67.65  Aligned_cols=51  Identities=24%  Similarity=0.455  Sum_probs=38.5

Q ss_pred             CCccccccccccccCC---CE----EcccCCccchhcHHHHHhcCC---------Cccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTS---SK----VLPCQHTFCKKCLEEIVSSHK---------ELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~---p~----~~~C~H~fC~~Cl~~~~~~~~---------~~~Cp~Cr~~~~   57 (162)
                      +....|+||+.++.+.   |.    ...|+|.|+..|+.+|+.+..         ...||.||.+++
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            3556899999999741   21    236999999999999997421         137999999876

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=2.1e-06  Score=51.01  Aligned_cols=13  Identities=8%  Similarity=0.141  Sum_probs=10.5

Q ss_pred             CCCceeeeeEEec
Q psy9673         119 TTGAFPMSYVQID  131 (162)
Q Consensus       119 ~~G~~P~~~v~~~  131 (162)
                      +.|+||++||+..
T Consensus        63 ~~G~~P~~yv~~~   75 (81)
T 1x6g_A           63 QEGLLAAGALRER   75 (81)
T ss_dssp             CEEEEEGGGEEEC
T ss_pred             CEEEEehHHEEEc
Confidence            3599999999863

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=2.5e-06  Score=51.21  Aligned_cols=12  Identities=33%  Similarity=0.498  Sum_probs=10.5

Q ss_pred             CCCceeeeeEEe
Q psy9673         119 TTGAFPMSYVQI  130 (162)
Q Consensus       119 ~~G~~P~~~v~~  130 (162)
                      +.|+||++||+.
T Consensus        63 ~~G~~P~~yv~~   74 (85)
T 2yuq_A           63 HEGYVPSSYLVE   74 (85)
T ss_dssp             CEEEEETTTCEE
T ss_pred             CEEEEehHHeEE
Confidence            469999999987

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=98.20  E-value=6.7e-07  Score=57.21  Aligned_cols=39  Identities=18%  Similarity=0.338  Sum_probs=28.9

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE---CCeEEeecCCCeEecc
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV---NGTTGAFPMSYVQFVW  155 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~---~g~~g~~p~~~~~~~~  155 (162)
                      +.-+.|-+-...-+ +++||.|+.   +|+.|+||++||+.+.
T Consensus        76 Lsf~~Gd~i~vl~~-~~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           76 LSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CCBCTTCEEEEEEE-ETTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             ccCcCCCEEEEEEc-CCCEEEEEECCCCCCEEEeChhHEEEec
Confidence            33345554443333 579999999   8999999999999864

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=98.19  E-value=3.1e-06  Score=53.16  Aligned_cols=42  Identities=17%  Similarity=0.279  Sum_probs=31.4

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEeccCC
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~~~~  157 (162)
                      +.-+.|-+-...-+.+++||.|+.  +|+.|+||++||+++..+
T Consensus        44 Ls~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   87 (109)
T 2yt6_A           44 LSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSI   87 (109)
T ss_dssp             CCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESSSC
T ss_pred             cCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECCcc
Confidence            344455544434345889999997  899999999999998654

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=98.18  E-value=2e-06  Score=64.67  Aligned_cols=44  Identities=32%  Similarity=0.654  Sum_probs=34.9

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCCCC
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLPI  159 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~~~  159 (162)
                      +.-+.|-+-...-+.+++||.|+.+|+.|+||++||+++.+++.
T Consensus       191 Lsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~  234 (341)
T 2dyb_A          191 LNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPE  234 (341)
T ss_dssp             CCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCCC
T ss_pred             CCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEcCCCCc
Confidence            34445665555555689999999999999999999999977653

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.16  E-value=1.2e-06  Score=50.57  Aligned_cols=15  Identities=33%  Similarity=0.760  Sum_probs=12.7

Q ss_pred             CCCCceeeeeEEecC
Q psy9673         118 GTTGAFPMSYVQIDN  132 (162)
Q Consensus       118 ~~~G~~P~~~v~~~~  132 (162)
                      |+.|+||++||+.-+
T Consensus        51 g~~G~~P~~yv~~~~   65 (70)
T 2ct4_A           51 GGEGYVPTSYLRVTS   65 (70)
T ss_dssp             SCEEEEEGGGEEECC
T ss_pred             CCEEEEEhHHeEEcC
Confidence            688999999998643

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=98.14  E-value=2.4e-06  Score=62.34  Aligned_cols=43  Identities=28%  Similarity=0.535  Sum_probs=32.9

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCCC
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYLP  158 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~~  158 (162)
                      +.-+.|.+-...-..+++||.|+.+|+.|+||++||+.+...+
T Consensus        19 l~~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   61 (283)
T 3jv3_A           19 LAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMD   61 (283)
T ss_dssp             CCBCTTCEEEEEECCSTTEEEEEETTEEEEEEGGGEEEGGGSC
T ss_pred             CCCCCCCEEEEEecCCCCEEEEEECCCCCcCCCccccccCccc
Confidence            4444565554444458899999999999999999999886543

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.12  E-value=1.6e-06  Score=51.36  Aligned_cols=40  Identities=15%  Similarity=0.023  Sum_probs=29.3

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEeccC
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~~~  156 (162)
                      +.-+.|-+-...- .+++||.|+.  +|+.|+||++||+.+..
T Consensus        34 Ls~~~Gd~i~v~~-~~~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           34 PIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             CSSCTTCEEEEEE-EETTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             CCCCCCCEEEEEe-cCCCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            4444555444333 4789999998  59999999999998753

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=98.12  E-value=1.6e-06  Score=49.82  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=23.3

Q ss_pred             cCCeEEEEE-CCeEEeecCCCeEeccC
Q psy9673         131 DNNWFYGEV-NGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       131 ~~~w~~g~~-~g~~g~~p~~~~~~~~~  156 (162)
                      +++||.|+. +|+.|+||++||+.+..
T Consensus        39 ~~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A           39 SRKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             SSSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CCCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            689999986 79999999999998754

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=98.12  E-value=1.6e-06  Score=52.13  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=27.0

Q ss_pred             ecCCCCceeeeeEEecCCeEEEE-ECCeEEeecCCCeEe
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGE-VNGTTGAFPMSYVQF  153 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~-~~g~~g~~p~~~~~~  153 (162)
                      +.-+.|-+-...- .+++||.|+ .+|+.|+||++||+.
T Consensus        48 Ls~~~Gd~i~v~~-~~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           48 LDIKKNERLWLLD-DSKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             CCCCTTEEEEEEE-CCSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             eccCCCCEEEEEe-cCCCeEEEEECCCCEEEeehHHEEe
Confidence            4444555443333 378999999 589999999999974

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.11  E-value=2.6e-06  Score=52.09  Aligned_cols=45  Identities=18%  Similarity=0.097  Sum_probs=31.9

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..+|+|.+|+++.|+...+++||.++..                      .|+.|++|.+||+++.+
T Consensus        55 ~~DLpfkkGE~LeVI~~~e~~wwLcRNs----------------------~GkyGyVP~~yl~~~d~   99 (102)
T 1ri9_A           55 TRDLQVKPGESLEVIQTTDDTKVLCRNE----------------------EGKYGYVLRSYLADNDG   99 (102)
T ss_dssp             TTBCCCCTTCBCEEEEESSSSEEEEEET----------------------TTEEEEEEGGGSCC---
T ss_pred             cccCCcCCCCEEEEEEeCCCCEEEEECC----------------------CCCCCceeHHHhccccc
Confidence            6799999999999999977655555532                      47777777777776544

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.10  E-value=1e-06  Score=71.44  Aligned_cols=59  Identities=20%  Similarity=0.368  Sum_probs=41.3

Q ss_pred             eeeEeeeec--------cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEE--ECCeEEeecCCC
Q psy9673          81 VSFIRFFLN--------ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE--VNGTTGAFPMSY  150 (162)
Q Consensus        81 ~~~~~~~~~--------~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~--~~g~~g~~p~~~  150 (162)
                      +..+.++++        +..|+|++||+|.+.+..+..                  -.+++||.|+  .+|+.|+||++|
T Consensus       573 s~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~------------------~~~~~W~~G~~~~~g~~G~fP~~~  634 (655)
T 3pvl_A          573 SKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQ------------------VMNSGWANGINERTKQRGDFPTDC  634 (655)
T ss_dssp             CCEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHH------------------HHHSSEEEEEETTTCCEEEEEGGG
T ss_pred             chhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcc------------------cCCCCeEEEEeCCCCceEEeEhhh
Confidence            567777777        347899999999988772100                  0134677777  468888888888


Q ss_pred             eEeccCC
Q psy9673         151 VQFVWYL  157 (162)
Q Consensus       151 ~~~~~~~  157 (162)
                      |+++-.+
T Consensus       635 V~~lptl  641 (655)
T 3pvl_A          635 VYVMPTV  641 (655)
T ss_dssp             EEECCCS
T ss_pred             EEECCCC
Confidence            8887544

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=98.08  E-value=1.3e-06  Score=62.13  Aligned_cols=43  Identities=19%  Similarity=0.329  Sum_probs=32.8

Q ss_pred             ecCCCCceeeeeEEecCCeEEEE-ECCeEEeecCCCeEeccCCC
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGE-VNGTTGAFPMSYVQFVWYLP  158 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~-~~g~~g~~p~~~~~~~~~~~  158 (162)
                      +.-+.|-+-...-+.+++||.|+ .+|+.|+||++||+.+...+
T Consensus       153 Lsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~  196 (230)
T 2dvj_A          153 LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS  196 (230)
T ss_dssp             CCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCSSC
T ss_pred             ccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcCCCC
Confidence            33445555554445589999999 79999999999999986654

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=98.07  E-value=3.7e-06  Score=53.83  Aligned_cols=42  Identities=24%  Similarity=0.468  Sum_probs=31.4

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE---CCeEEeecCCCeEeccCC
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV---NGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~---~g~~g~~p~~~~~~~~~~  157 (162)
                      +.-+.|-+-...-+.+++||.|+.   +|+.|+||++||+.+...
T Consensus        20 Lsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~   64 (120)
T 2kym_A           20 LDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLM   64 (120)
T ss_dssp             CCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECSS
T ss_pred             cCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccCC
Confidence            334456555555556899999996   588999999999988543

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=98.06  E-value=2.8e-06  Score=57.79  Aligned_cols=38  Identities=26%  Similarity=0.447  Sum_probs=28.2

Q ss_pred             ecCCCCceeeeeEEecCCeEEEE-ECCeEEeecCCCeEe
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGE-VNGTTGAFPMSYVQF  153 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~-~~g~~g~~p~~~~~~  153 (162)
                      +.-+.|.+-...-+.+++||.|+ .+|++|+||++||+.
T Consensus       135 Lsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          135 LPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             CCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             cccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            33344554443444489999999 599999999999986

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=98.05  E-value=6.4e-07  Score=53.55  Aligned_cols=22  Identities=36%  Similarity=0.821  Sum_probs=18.8

Q ss_pred             CCeEEEE--ecCCCCceeeeeEEe
Q psy9673         109 NNWFYGE--VNGTTGAFPMSYVQI  130 (162)
Q Consensus       109 ~~w~~g~--~~~~~G~~P~~~v~~  130 (162)
                      .+||.|+  .+|+.|+||++||+.
T Consensus        53 ~gW~~g~~~~~g~~G~fP~~yV~~   76 (83)
T 3i5r_A           53 IGWLNGYNETTGERGDFPGTYVEY   76 (83)
T ss_dssp             HCEEEEEETTTTEEEEEEGGGEEE
T ss_pred             CccEEEEeCCCCCEEEEehHHEEE
Confidence            3899996  468899999999975

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=98.03  E-value=9.3e-06  Score=45.60  Aligned_cols=37  Identities=24%  Similarity=0.465  Sum_probs=31.8

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEec
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVN  117 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~  117 (162)
                      ...++++|+     ..+|+|.+||+|.|+.+.+++||.|+++
T Consensus        21 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~n   62 (62)
T 1g2b_A           21 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN   62 (62)
T ss_dssp             SCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEC
T ss_pred             ceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEeC
Confidence            456788887     7799999999999999988899998864

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.02  E-value=2.2e-06  Score=60.05  Aligned_cols=39  Identities=21%  Similarity=0.461  Sum_probs=29.4

Q ss_pred             ecCCCCceeeeeE-----EecCCeEEEEE----------CCeEEeecCCCeEec
Q psy9673         116 VNGTTGAFPMSYV-----QIDNNWFYGEV----------NGTTGAFPMSYVQFV  154 (162)
Q Consensus       116 ~~~~~G~~P~~~v-----~~~~~w~~g~~----------~g~~g~~p~~~~~~~  154 (162)
                      +.-+.|-+-...-     ..+++||.|+.          +|+.|+||++||+.+
T Consensus       159 LSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          159 LQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             CCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             CCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            4445565554444     45789999997          599999999999986

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.01  E-value=6.8e-06  Score=49.79  Aligned_cols=42  Identities=29%  Similarity=0.460  Sum_probs=31.2

Q ss_pred             cceeeccCCCEEEEeEecCC--CeEEEE-ecCCCCceeeeeEEec
Q psy9673          90 ILDLNFKKDDIVILRRKIDN--NWFYGE-VNGTTGAFPMSYVQID  131 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~--~w~~g~-~~~~~G~~P~~~v~~~  131 (162)
                      ..+|+|..|+++.|+...+.  +||.++ .+|+.|.+|.+||++|
T Consensus        41 ~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~vd   85 (96)
T 2gtj_A           41 KNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEID   85 (96)
T ss_dssp             TSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEEC
T ss_pred             cccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEEE
Confidence            77999999999999988773  476666 3566666666666653

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=97.99  E-value=1.9e-06  Score=54.78  Aligned_cols=39  Identities=21%  Similarity=0.461  Sum_probs=29.4

Q ss_pred             ecCCCCceeeeeE-----EecCCeEEEEE----------CCeEEeecCCCeEec
Q psy9673         116 VNGTTGAFPMSYV-----QIDNNWFYGEV----------NGTTGAFPMSYVQFV  154 (162)
Q Consensus       116 ~~~~~G~~P~~~v-----~~~~~w~~g~~----------~g~~g~~p~~~~~~~  154 (162)
                      +.-+.|-+-...-     +.+++||.|+.          +|+.|+||++||+++
T Consensus        61 Lsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           61 LQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             CCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             cCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            4445565554444     45789999976          389999999999986

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=97.96  E-value=8e-06  Score=63.78  Aligned_cols=41  Identities=22%  Similarity=0.440  Sum_probs=32.0

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      +.-+.|-+-...-..+++||.|+.+|+.|+||++||+++.+
T Consensus        47 L~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   87 (466)
T 2pz1_A           47 LGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVN   87 (466)
T ss_dssp             CCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSC
T ss_pred             CCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeeeccC
Confidence            33445655554445589999999999999999999998754

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=97.95  E-value=7.4e-07  Score=52.50  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=22.2

Q ss_pred             ecCCeEEEEE-CCeEEeecCCCeEec
Q psy9673         130 IDNNWFYGEV-NGTTGAFPMSYVQFV  154 (162)
Q Consensus       130 ~~~~w~~g~~-~g~~g~~p~~~~~~~  154 (162)
                      .+++||.|+. +|+.|+||++||+..
T Consensus        51 ~~~~Ww~~~~~~g~~G~~P~~yv~~~   76 (77)
T 1awj_A           51 SEIHWWRVQDKNGHEGYAPSSYLVEK   76 (77)
T ss_dssp             TSSSBCCCCCSSSCCCCCBSTTCCCC
T ss_pred             cCCCCEEEEECCCCEEEEehHHEEEc
Confidence            4779999996 999999999999864

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=97.90  E-value=8.9e-06  Score=47.99  Aligned_cols=27  Identities=15%  Similarity=0.229  Sum_probs=21.4

Q ss_pred             cceeeccCCCEEEEeEecC--CCeEEEEe
Q psy9673          90 ILDLNFKKDDIVILRRKID--NNWFYGEV  116 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~--~~w~~g~~  116 (162)
                      ..+|+|++|+++.++++..  .+||..+.
T Consensus        31 ~~ELS~~kGd~vevle~~~~~peW~lvr~   59 (82)
T 1u3o_A           31 SSELSIQVGQTVELLERPSERPGWCLVRT   59 (82)
T ss_dssp             TTCCCBCTTCEEEESSCTTSSTTEEEEEE
T ss_pred             CCeeeEcCCCEEEEEecCCCCCCEEEEEE
Confidence            7899999999999998764  45666653

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=97.84  E-value=1.5e-05  Score=54.75  Aligned_cols=37  Identities=19%  Similarity=0.378  Sum_probs=27.3

Q ss_pred             CCCceeeeeEEecCCeEEEEE---CCeEEeecCCCeEeccC
Q psy9673         119 TTGAFPMSYVQIDNNWFYGEV---NGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       119 ~~G~~P~~~v~~~~~w~~g~~---~g~~g~~p~~~~~~~~~  156 (162)
                      +.|-+-.-.-+.+ +||.|+.   +|+.|+||++||++...
T Consensus        37 ~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~   76 (184)
T 3a98_A           37 QIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKEV   76 (184)
T ss_dssp             CTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEECC
T ss_pred             CCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEecc
Confidence            4454443333334 5999999   89999999999998754

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=97.82  E-value=2.8e-05  Score=57.96  Aligned_cols=49  Identities=20%  Similarity=0.432  Sum_probs=39.8

Q ss_pred             ceeeeEeeeec-----cc-------eeeccCCCEEEEeEecCCCeEEEEe---cCCCCceeeee
Q psy9673          79 LVVSFIRFFLN-----IL-------DLNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPMSY  127 (162)
Q Consensus        79 ~~~~~~~~~~~-----~~-------el~~~~gd~i~v~~~~~~~w~~g~~---~~~~G~~P~~~  127 (162)
                      ...-.++++|+     ..       +++|.+||++.|.++.+.+||.|+.   +|..|+||+++
T Consensus        36 ~~~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           36 PVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CCCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             CccEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            33556778887     11       4899999999999999999999997   46789999876

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.69  E-value=1.2e-05  Score=46.66  Aligned_cols=24  Identities=38%  Similarity=0.684  Sum_probs=22.1

Q ss_pred             cCCCeEEEEecCCCCceeeeeEEe
Q psy9673         107 IDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       107 ~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      .+++||.|+.+|+.|+||++||+.
T Consensus        42 ~~~~Ww~g~~~g~~G~~P~~yv~~   65 (73)
T 2dl7_A           42 DDDGFWEGEFNGRIGVFPSVLVEE   65 (73)
T ss_dssp             SSSSCEEEEETTEEEEECSSSEEE
T ss_pred             CCCCcEEEEECCCEEEEChHHEEE
Confidence            477999999999999999999986

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=97.68  E-value=3e-05  Score=61.38  Aligned_cols=40  Identities=18%  Similarity=0.014  Sum_probs=30.0

Q ss_pred             CCCCceeeeeEEecCCeEEEE--ECCeEEeecCCCeEeccCC
Q psy9673         118 GTTGAFPMSYVQIDNNWFYGE--VNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       118 ~~~G~~P~~~v~~~~~w~~g~--~~g~~g~~p~~~~~~~~~~  157 (162)
                      -+.|-+-...-+.+++||.|+  .+|+.|+||+|||+++..+
T Consensus       461 ~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~~  502 (526)
T 2de0_X          461 MEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIET  502 (526)
T ss_dssp             BCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCCE
T ss_pred             cCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEcccC
Confidence            344544444444489999999  5899999999999998543

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=97.67  E-value=5.3e-05  Score=58.74  Aligned_cols=44  Identities=23%  Similarity=0.298  Sum_probs=33.0

Q ss_pred             ecCCCCceeeeeEE-ecCCeEEEEEC-CeEEeecCCCeEeccCCCC
Q psy9673         116 VNGTTGAFPMSYVQ-IDNNWFYGEVN-GTTGAFPMSYVQFVWYLPI  159 (162)
Q Consensus       116 ~~~~~G~~P~~~v~-~~~~w~~g~~~-g~~g~~p~~~~~~~~~~~~  159 (162)
                      +.-+.|.+-...-+ .+++||.|+.. |+.|+||+|||++...++.
T Consensus        28 l~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~~~~   73 (450)
T 1k9a_A           28 LPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKA   73 (450)
T ss_dssp             CCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCCCC
T ss_pred             CCCCCCCEEEEeeccCCCCceEEEECCCceeeechhcccccccccc
Confidence            44455665544444 47899999997 9999999999999877543

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=97.66  E-value=3.6e-05  Score=52.33  Aligned_cols=27  Identities=22%  Similarity=0.553  Sum_probs=24.2

Q ss_pred             cCCeEEEEE--CCeEEeecCCCeEeccCC
Q psy9673         131 DNNWFYGEV--NGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       131 ~~~w~~g~~--~g~~g~~p~~~~~~~~~~  157 (162)
                      +++||.|+.  +|+.|+||++||+....+
T Consensus        43 ~~~Ww~~~~~~~g~~G~vP~~yv~~~~~l   71 (175)
T 4d8k_A           43 SGEWWKAQSLTTGQEGFIPFNFVAKANSL   71 (175)
T ss_dssp             CSSEEEEEETTTCCEEEEEGGGEEETTCS
T ss_pred             CCCEEEEEECCCCceeeeccccccccccc
Confidence            789999999  899999999999987544

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.62  E-value=4.9e-05  Score=54.23  Aligned_cols=49  Identities=22%  Similarity=0.505  Sum_probs=40.2

Q ss_pred             CccccccccccccCCCEEc-ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ....|.+|.+++. .-... .|+|.|+..|+..|+...+...||.|+...+
T Consensus       179 ~i~~C~iC~~iv~-~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          179 AVKICNICHSLLI-QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             TCCBCTTTCSBCS-SCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CCCcCcchhhHHh-CCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            3568999999998 44444 3999999999999998766668999999765

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=97.62  E-value=3.5e-05  Score=61.12  Aligned_cols=42  Identities=19%  Similarity=0.317  Sum_probs=31.9

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEeccCC
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~~~~  157 (162)
                      +.-+.|-+-.-.-+.+++||.|+.  +|+.|+||++||+....+
T Consensus       102 l~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~l  145 (535)
T 2h8h_A          102 LSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI  145 (535)
T ss_dssp             CCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             CCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcccccc
Confidence            344456555444445899999999  899999999999987544

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=97.57  E-value=2.7e-05  Score=43.64  Aligned_cols=10  Identities=40%  Similarity=0.946  Sum_probs=7.4

Q ss_pred             cCCeEEEEEC
Q psy9673         131 DNNWFYGEVN  140 (162)
Q Consensus       131 ~~~w~~g~~~  140 (162)
                      +++||.|+++
T Consensus        53 ~~~Ww~g~~n   62 (62)
T 1g2b_A           53 NKDWWKVEVN   62 (62)
T ss_dssp             SSSEEEEEEC
T ss_pred             CCCEEEEEeC
Confidence            6788888764

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=97.53  E-value=5.2e-05  Score=58.80  Aligned_cols=41  Identities=20%  Similarity=0.310  Sum_probs=30.4

Q ss_pred             cCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEeccCC
Q psy9673         117 NGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       117 ~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~~~~  157 (162)
                      .-+.|-+-.-.-+.+++||.|+.  +|+.|+||++||++...+
T Consensus        20 ~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~l   62 (452)
T 1fmk_A           20 SFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI   62 (452)
T ss_dssp             CBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             CccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccccccc
Confidence            33445544333334889999999  899999999999987554

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.48  E-value=3.6e-05  Score=45.55  Aligned_cols=21  Identities=29%  Similarity=0.941  Sum_probs=19.7

Q ss_pred             CeEEEEecCCCCceeeeeEEe
Q psy9673         110 NWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       110 ~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      +||.|+.+|+.|+||++||+.
T Consensus        53 ~Ww~g~~~g~~G~~P~~yv~~   73 (81)
T 1x43_A           53 DWLMGERGNQKGKVPITYLEL   73 (81)
T ss_dssp             TEEEEEETTEEEEEEGGGEEE
T ss_pred             CcEEEEECCCEEEEehHHEEE
Confidence            699999999999999999986

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.37  E-value=4.9e-05  Score=44.02  Aligned_cols=20  Identities=50%  Similarity=1.056  Sum_probs=18.9

Q ss_pred             eEEEEecCCCCceeeeeEEe
Q psy9673         111 WFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       111 w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ||.|+.+|+.|+||++||+.
T Consensus        44 Ww~g~~~g~~G~~P~~yv~~   63 (73)
T 2dm1_A           44 WWKGETNGRIGWFPSTYVEE   63 (73)
T ss_dssp             CEEEEETTEEEEECSSSEEE
T ss_pred             eEEEEECCeEEEeehHHEEE
Confidence            89999999999999999986

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=97.32  E-value=7.8e-05  Score=45.95  Aligned_cols=33  Identities=18%  Similarity=0.648  Sum_probs=26.7

Q ss_pred             CccccccccccccCCCEE--cccCCccchhcHHHH
Q psy9673           8 DLLECSVCLDRLDTSSKV--LPCQHTFCKKCLEEI   40 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~--~~C~H~fC~~Cl~~~   40 (162)
                      +++.|++|.+.+..+++.  +.|+|+||..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            468899999764336666  899999999999873

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=97.31  E-value=0.00019  Score=56.35  Aligned_cols=42  Identities=19%  Similarity=0.216  Sum_probs=31.6

Q ss_pred             ecCCCCceeeeeEEe-cCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673         116 VNGTTGAFPMSYVQI-DNNWFYGEVNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~-~~~w~~g~~~g~~g~~p~~~~~~~~~~  157 (162)
                      +.-+.|-+-.-.-+. +++||.|+.+|+.|+||+|||+++..+
T Consensus        60 ls~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~~l  102 (495)
T 1opk_A           60 LSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSL  102 (495)
T ss_dssp             CCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESSSG
T ss_pred             CCccCCCEEEEeecCCCCCceeeeecCCcceeccccccccccc
Confidence            344456555444444 789999999999999999999987554

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=97.29  E-value=7.4e-05  Score=44.09  Aligned_cols=17  Identities=47%  Similarity=1.015  Sum_probs=14.3

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        49 g~~~g~~G~fP~~yv~~   65 (80)
T 2i0n_A           49 GQLNGKEGSFPVDHVEI   65 (80)
T ss_dssp             EEETTEEEEEEGGGEEE
T ss_pred             EEECCcEEEechHHEEE
Confidence            45678899999999986

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=97.23  E-value=0.00013  Score=56.63  Aligned_cols=40  Identities=20%  Similarity=0.311  Sum_probs=29.0

Q ss_pred             cCCCCceeeeeEEecCCeEEEE--ECCeEEeecCCCeEeccCC
Q psy9673         117 NGTTGAFPMSYVQIDNNWFYGE--VNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       117 ~~~~G~~P~~~v~~~~~w~~g~--~~g~~g~~p~~~~~~~~~~  157 (162)
                      .-+.|-+-.- ++.+++||.|+  .+|+.|+||++||+.+..+
T Consensus        26 ~~~~gd~~~v-~~~~~~W~~~~~~~~g~~G~~P~~yv~~~~~l   67 (454)
T 1qcf_A           26 SFQKGDQMVV-LEESGEWWKARSLATRKEGYIPSNYVARVDSL   67 (454)
T ss_dssp             CBCTTCEEEE-EECCTTEEEEEETTTCCEEEEEGGGEEETTCG
T ss_pred             cccCCCEEEE-EecCCCCeEEEECCCCceEEecchhccccccc
Confidence            3344554432 23378999999  6899999999999987543

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=97.17  E-value=5.9e-05  Score=59.27  Aligned_cols=24  Identities=29%  Similarity=0.898  Sum_probs=0.0

Q ss_pred             cCCeEEEEEC-CeEEeecCCCeEec
Q psy9673         131 DNNWFYGEVN-GTTGAFPMSYVQFV  154 (162)
Q Consensus       131 ~~~w~~g~~~-g~~g~~p~~~~~~~  154 (162)
                      +.+||.|+++ |+.|+||++||+++
T Consensus       461 ~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          461 EQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             -------------------------
T ss_pred             CCCeeEEEeCCCCEEEEeHHHceeC
Confidence            3489999998 99999999999986

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.09  E-value=0.0004  Score=57.09  Aligned_cols=51  Identities=18%  Similarity=0.296  Sum_probs=40.3

Q ss_pred             eeEeeeec-----cce-----eeccCCCEEEEeEecCCCeEEEEec------CCCCceeeeeEEecC
Q psy9673          82 SFIRFFLN-----ILD-----LNFKKDDIVILRRKIDNNWFYGEVN------GTTGAFPMSYVQIDN  132 (162)
Q Consensus        82 ~~~~~~~~-----~~e-----l~~~~gd~i~v~~~~~~~w~~g~~~------~~~G~~P~~~v~~~~  132 (162)
                      -..+++|+     ..+     |+|++||++.|.++.+.+||.++..      +..|+||++|+....
T Consensus       428 ~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~~  494 (721)
T 2xkx_A          428 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERR  494 (721)
T ss_pred             eeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHHHH
Confidence            34577777     333     8999999999999999999999854      235999999986533

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.03  E-value=0.00037  Score=53.26  Aligned_cols=50  Identities=16%  Similarity=0.177  Sum_probs=39.6

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEe---cCCCeEEEEecC------CCCceeeeeEEe
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRK---IDNNWFYGEVNG------TTGAFPMSYVQI  130 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~---~~~~w~~g~~~~------~~G~~P~~~v~~  130 (162)
                      .-..+++|+     ..+|+|..||++.|.++   .+.+||.+...+      ..|+||++|+..
T Consensus       106 ~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          106 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             ccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            345667776     66899999999999999   467899998533      269999998864

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=97.00  E-value=0.0003  Score=57.15  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=20.6

Q ss_pred             CCCeEEEE--ecCCCCceeeeeEEe
Q psy9673         108 DNNWFYGE--VNGTTGAFPMSYVQI  130 (162)
Q Consensus       108 ~~~w~~g~--~~~~~G~~P~~~v~~  130 (162)
                      +++||.|+  .+|+.|+||++||.+
T Consensus       613 ~~~W~~G~~~~~g~~G~fP~~~V~~  637 (655)
T 3pvl_A          613 NSGWANGINERTKQRGDFPTDCVYV  637 (655)
T ss_dssp             HSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCCeEEEEeCCCCceEEeEhhhEEE
Confidence            66999999  689999999999975

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=96.98  E-value=0.00089  Score=48.96  Aligned_cols=49  Identities=12%  Similarity=0.066  Sum_probs=34.6

Q ss_pred             eeeEeeeec--cceeeccCCCEEEEeEecCCCeEEEEe-cCCCCceeeeeEE
Q psy9673          81 VSFIRFFLN--ILDLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYVQ  129 (162)
Q Consensus        81 ~~~~~~~~~--~~el~~~~gd~i~v~~~~~~~w~~g~~-~~~~G~~P~~~v~  129 (162)
                      ...+.++|+  ..++.+.+|+.+.+.+..+..||..+. +|..|.+|++|+.
T Consensus       198 ~~~v~al~dy~~~e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~  249 (283)
T 3pe0_A          198 RLPLLAVCDYKQVEVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFL  249 (283)
T ss_dssp             CEEEEECSCEECSSCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEE
T ss_pred             CceEEeecCccCCcccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEe
Confidence            355777777  778999999999999987777888773 4445555555554

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=96.88  E-value=0.00044  Score=51.11  Aligned_cols=48  Identities=17%  Similarity=0.286  Sum_probs=35.0

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCC---------eEEEEecC------CCCceeeeeEEe
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNN---------WFYGEVNG------TTGAFPMSYVQI  130 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~---------w~~g~~~~------~~G~~P~~~v~~  130 (162)
                      ..+++|+     +.+|.|..||++.|++..+.+         ||.+..-+      ..|++|++|+..
T Consensus         6 yVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            6 YIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             EEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            3556666     789999999999999998766         99987432      469999888764

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=96.72  E-value=0.00096  Score=52.08  Aligned_cols=49  Identities=16%  Similarity=0.177  Sum_probs=38.9

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEe---cCCCeEEEEe---cC---CCCceeeeeEEe
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRK---IDNNWFYGEV---NG---TTGAFPMSYVQI  130 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~---~~~~w~~g~~---~~---~~G~~P~~~v~~  130 (162)
                      -..+++|+     +.+|.|..||++.|.++   .+.+||.+..   ++   ..|+||++|+..
T Consensus        99 ~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A           99 FYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             cccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            35666766     67899999999999998   4678999985   22   369999998864

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=96.72  E-value=0.0015  Score=47.92  Aligned_cols=35  Identities=26%  Similarity=0.552  Sum_probs=27.3

Q ss_pred             eeeccCCCEEEEeEecCCCeEEEEe---c---CCCCceeee
Q psy9673          92 DLNFKKDDIVILRRKIDNNWFYGEV---N---GTTGAFPMS  126 (162)
Q Consensus        92 el~~~~gd~i~v~~~~~~~w~~g~~---~---~~~G~~P~~  126 (162)
                      .|+|+.||++.|.++.+.+||.++.   +   +..|++|+.
T Consensus        26 gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~   66 (292)
T 3tvt_A           26 GLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSK   66 (292)
T ss_dssp             CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECH
T ss_pred             cCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeCh
Confidence            5899999999999999999999984   1   236999974

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=96.69  E-value=0.0011  Score=46.04  Aligned_cols=49  Identities=29%  Similarity=0.546  Sum_probs=38.6

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ...+++|+     ..++.+..|+++.+....+.+||.+...|+.|++|.+|+..
T Consensus        15 ~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~   68 (222)
T 3ehr_A           15 KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   68 (222)
T ss_dssp             EEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHH
T ss_pred             eEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccc
Confidence            34566666     67889999999999998888888888887788888777653

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=96.45  E-value=0.00077  Score=40.78  Aligned_cols=26  Identities=15%  Similarity=0.286  Sum_probs=22.9

Q ss_pred             cCCeEEEEE-CCeEEeecCCCeEeccC
Q psy9673         131 DNNWFYGEV-NGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       131 ~~~w~~g~~-~g~~g~~p~~~~~~~~~  156 (162)
                      +++||.+|. .|+.|++|.+||++.-.
T Consensus        61 p~g~Wl~RN~~G~~GyVp~~~v~vd~~   87 (96)
T 2gtj_A           61 PEGKWLGRTARGSYGYIKTTAVEIDYD   87 (96)
T ss_dssp             SSSCCEEECTTCCBCCCCGGGEEECSS
T ss_pred             CCCeEEEECCCCCCCccchhhEEEEhH
Confidence            468999999 69999999999998744

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=96.42  E-value=0.0017  Score=54.45  Aligned_cols=69  Identities=13%  Similarity=0.179  Sum_probs=59.8

Q ss_pred             CCCccccccccccccCCCEEcccC-CccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQ-HTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPL   79 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~-H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~   79 (162)
                      .-+++.|||-.+++. +|++++-| ++|=...|.+|+.+++  +||.=|.++.  ...+.+|..++..++.+...
T Consensus       888 iP~~F~cPIs~~lM~-DPVilpsG~~TydR~~I~~wl~~~~--tdP~Tr~~L~--~~~liPN~~Lk~~I~~w~~~  957 (968)
T 3m62_A          888 VPDEFLDPLMYTIMK-DPVILPASKMNIDRSTIKAHLLSDS--TDPFNRMPLK--LEDVTPNEELRQKILCFKKQ  957 (968)
T ss_dssp             SCGGGBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHTTCC--BCTTTCCBCC--GGGCEECHHHHHHHHHHHHH
T ss_pred             CcHHhCCcchhhHHh-CCeEcCCCCEEECHHHHHHHHhcCC--CCCCCCCCCC--cccccccHHHHHHHHHHHHH
Confidence            347889999999999 99999998 6999999999998755  8999999997  56888999999988877543

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=96.36  E-value=0.0018  Score=38.12  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=18.1

Q ss_pred             cCCeEEEEE----CCeEEeecCCCe
Q psy9673         131 DNNWFYGEV----NGTTGAFPMSYV  151 (162)
Q Consensus       131 ~~~w~~g~~----~g~~g~~p~~~~  151 (162)
                      +.+||..+.    .++.|++|+|||
T Consensus        51 ~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           51 RPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             STTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             CCCEEEEEECCCCCCcEeeccccEE
Confidence            469999997    348899999999

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=96.29  E-value=0.0015  Score=48.01  Aligned_cols=37  Identities=14%  Similarity=0.061  Sum_probs=26.0

Q ss_pred             cCCCCceeeeeEEecCCeEEEEECC------eEEeecCCCeEe
Q psy9673         117 NGTTGAFPMSYVQIDNNWFYGEVNG------TTGAFPMSYVQF  153 (162)
Q Consensus       117 ~~~~G~~P~~~v~~~~~w~~g~~~g------~~g~~p~~~~~~  153 (162)
                      .-+.|-+-.-.-..+++||.|+..|      +.|+||++|++.
T Consensus        24 sf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e   66 (295)
T 1kjw_A           24 SFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (295)
T ss_dssp             CBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             cCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHH
Confidence            3344554433333488999999963      889999999854

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=96.27  E-value=0.0012  Score=38.13  Aligned_cols=17  Identities=35%  Similarity=0.755  Sum_probs=14.2

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        49 g~~~g~~G~fP~~yv~~   65 (73)
T 2ebp_A           49 GLLNNKVGTFKFIYVDV   65 (73)
T ss_dssp             EECSSCEEEECSTTEEE
T ss_pred             EEECCCEEEEeHHHEEE
Confidence            45668899999999986

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=96.25  E-value=0.0014  Score=36.45  Aligned_cols=17  Identities=47%  Similarity=0.935  Sum_probs=14.0

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        40 g~~~g~~G~~P~~yv~~   56 (62)
T 2j6f_A           40 GELNGRRGMFPDNFVKE   56 (62)
T ss_dssp             EEETTEEEEEEGGGEEE
T ss_pred             EEECCcEEEechHHEEE
Confidence            44578899999999985

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=96.23  E-value=0.0014  Score=37.04  Aligned_cols=17  Identities=59%  Similarity=1.052  Sum_probs=14.5

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        41 g~~~g~~G~fP~~yv~~   57 (67)
T 2bzy_A           41 GEVNGRKGLFPFTHVKI   57 (67)
T ss_dssp             EEETTEEEEEEGGGEEE
T ss_pred             EEeCCcEEEEehHHeEE
Confidence            45678899999999986

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=96.12  E-value=0.0017  Score=36.99  Aligned_cols=21  Identities=43%  Similarity=1.102  Sum_probs=19.7

Q ss_pred             CeEEEEecCCCCceeeeeEEe
Q psy9673         110 NWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       110 ~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      +||.|+.+|+.|+||++||+.
T Consensus        38 gWw~g~~~g~~G~~P~~yV~~   58 (69)
T 2ydl_A           38 GWWEGELNGRRGVFPDNFVKL   58 (69)
T ss_dssp             TEEEEEETTEEEEEEGGGEEE
T ss_pred             CEEEEEECCcEEEecHHHEEE
Confidence            599999999999999999986

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=96.08  E-value=0.0078  Score=46.80  Aligned_cols=50  Identities=18%  Similarity=0.151  Sum_probs=40.5

Q ss_pred             eeeEeeeec--cceeeccCCCEEEEeEecCCCeEEEEe-cCCCCceeeeeEEe
Q psy9673          81 VSFIRFFLN--ILDLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYVQI  130 (162)
Q Consensus        81 ~~~~~~~~~--~~el~~~~gd~i~v~~~~~~~w~~g~~-~~~~G~~P~~~v~~  130 (162)
                      ...++++|+  ..++.+.+|+.+++.+..+..||..+. +|..|++|+.|+.+
T Consensus       283 ~~~V~alcdy~~~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~i  335 (450)
T 3r6n_A          283 PIILRALCDYKQDQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLII  335 (450)
T ss_dssp             CCEEEESSCEEETTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEEC
T ss_pred             CceEEEeccccCCeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEec
Confidence            455778888  789999999999999999988998885 45778888777654

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=95.98  E-value=0.0021  Score=37.66  Aligned_cols=17  Identities=59%  Similarity=1.161  Sum_probs=14.1

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        56 g~~~g~~G~fP~nyV~~   72 (79)
T 1z9q_A           56 GTVRGATGIFPLSFVKI   72 (79)
T ss_dssp             EEETTEEEEEEGGGEEE
T ss_pred             EEECCeEEEecHHHEEE
Confidence            44567899999999986

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=95.95  E-value=0.019  Score=42.25  Aligned_cols=61  Identities=11%  Similarity=0.068  Sum_probs=50.4

Q ss_pred             eeccCCCEEEEeEecCCCeEEEEe-cCCCCceeeeeEEe-----------------------------------------
Q psy9673          93 LNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYVQI-----------------------------------------  130 (162)
Q Consensus        93 l~~~~gd~i~v~~~~~~~w~~g~~-~~~~G~~P~~~v~~-----------------------------------------  130 (162)
                      ..+..|+.+.|+++ + +|+..+. +|..||++..++..                                         
T Consensus        35 ~~l~~G~~v~Vl~~-~-gW~~V~~~dG~~GwV~~~~l~~~~~~~~~~~~~~~~~vvt~~~~~vr~~p~~~~~~~~~l~~G  112 (306)
T 3npf_A           35 TQALLGMPVKVLQY-N-GWYEIQTPDDYTGWVHRMVITPMSKERYDEWNRAEKIVVTSHYGFAYEKPDESSQPVSDVVAG  112 (306)
T ss_dssp             EEEETTCEEEEEEE-S-SEEEEECTTSCEEEEEGGGEEEECHHHHHHHHHSCEEEECSSEEEEESSSSTTSCEEEEEETT
T ss_pred             EEEcCCCEEEEEEE-C-CEEEEEcCCCCEEEEEhHHeeecChhhhhhhccCCcEEEeecceeEEeCCCCCCceEEEEcCC
Confidence            34677999999887 4 6999997 78999999876542                                         


Q ss_pred             --------cCCeEEEEE-CCeEEeecCCCeEecc
Q psy9673         131 --------DNNWFYGEV-NGTTGAFPMSYVQFVW  155 (162)
Q Consensus       131 --------~~~w~~g~~-~g~~g~~p~~~~~~~~  155 (162)
                              +++|+.-++ +|+.|+++..++++..
T Consensus       113 t~v~v~~~~~~W~kV~~pdG~~GyV~~~~l~~~~  146 (306)
T 3npf_A          113 NRLKWEGSKGHFYQVSYPDGRKAYLSKSISQPEA  146 (306)
T ss_dssp             CEEEEEEEETTEEEEECTTSCEEEEETTSEEEHH
T ss_pred             CEEEEEeecCCEEEEEcCCCCeEEEEeeccceee
Confidence                    678999998 8999999999998763

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.75  E-value=0.0031  Score=36.12  Aligned_cols=17  Identities=35%  Similarity=0.788  Sum_probs=13.8

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||++
T Consensus        47 g~~~g~~G~~P~~yv~~   63 (72)
T 2dl8_A           47 GRHNGIDGLIPHQYIVV   63 (72)
T ss_dssp             EEETTEEEEECSSSEEE
T ss_pred             EEECCEEEEEchHHeEE
Confidence            34467889999999986

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.72  E-value=0.0027  Score=37.90  Aligned_cols=17  Identities=59%  Similarity=1.052  Sum_probs=14.6

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        56 g~~~g~~G~fP~~yv~~   72 (88)
T 2dbk_A           56 GEVNGRKGLFPFTHVKI   72 (88)
T ss_dssp             EECSSCEEEECTTTEEE
T ss_pred             EEeCCCEEEEehHHeEE
Confidence            45678899999999986

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=95.67  E-value=0.003  Score=35.71  Aligned_cols=17  Identities=53%  Similarity=1.046  Sum_probs=13.8

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        45 g~~~g~~G~~P~~yv~~   61 (68)
T 2djq_A           45 GEINGVSGIFPASSVEV   61 (68)
T ss_dssp             EEETTEEEEEESSSEET
T ss_pred             EEECCcEEEeehHHEEE
Confidence            34567899999999985

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.57  E-value=0.0084  Score=45.15  Aligned_cols=68  Identities=21%  Similarity=0.443  Sum_probs=50.3

Q ss_pred             CccccccccccccCCCEEcccCCccchhc--HHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccc
Q psy9673           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKC--LEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLF   77 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~C--l~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~   77 (162)
                      -.|.||+=...+..+.+...|.|.-|..-  +.........+.||+|.+.+.  ..++.....+..++....
T Consensus       248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~--~~dL~ID~~~~~IL~~~~  317 (371)
T 3i2d_A          248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA--LENLAISEFVDDILQNCQ  317 (371)
T ss_dssp             EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC--GGGEEEBHHHHHHHTTSC
T ss_pred             EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC--HHHeeEcHHHHHHHHhcc
Confidence            45789998888886667778999866644  333334456789999999887  667878888877777653

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=95.52  E-value=0.0042  Score=35.63  Aligned_cols=16  Identities=50%  Similarity=1.041  Sum_probs=13.2

Q ss_pred             EecCCCCceeeeeEEe
Q psy9673         115 EVNGTTGAFPMSYVQI  130 (162)
Q Consensus       115 ~~~~~~G~~P~~~v~~  130 (162)
                      +.+|+.|+||++||+.
T Consensus        52 ~~~g~~G~~P~~yv~~   67 (73)
T 3c0c_A           52 MLHGQSGFFPLSYVQV   67 (73)
T ss_dssp             EETTEEEEEEGGGEEE
T ss_pred             EECCCEEEeChHHEEE
Confidence            3467889999999975

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.51  E-value=0.004  Score=36.04  Aligned_cols=17  Identities=41%  Similarity=0.868  Sum_probs=13.8

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        48 g~~~g~~G~~P~~yv~~   64 (76)
T 2epd_A           48 GEHNGMRGLIPHKYITL   64 (76)
T ss_dssp             EEETTEEEEEESSSEEC
T ss_pred             EEECCcEEEEehHHEEE
Confidence            34467889999999986

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=95.51  E-value=0.0045  Score=43.46  Aligned_cols=25  Identities=16%  Similarity=0.555  Sum_probs=22.3

Q ss_pred             ecCCCeEEEEecCCCCceeeeeEEe
Q psy9673         106 KIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       106 ~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ..+.+||.++.+|+.|+||.+||+.
T Consensus       203 ~~~~~Ww~~~~~~~~G~~P~~yv~~  227 (239)
T 1ycs_B          203 EDEIEWWWARLNDKEGYVPRNLLGL  227 (239)
T ss_dssp             TSCSSEEEEEETTEEEEEEGGGEEC
T ss_pred             CCCCCEEEEEECCcEEEeehHHeeE
Confidence            3477999999999999999999975

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.45  E-value=0.0029  Score=36.67  Aligned_cols=19  Identities=37%  Similarity=0.945  Sum_probs=15.9

Q ss_pred             EEEEecCCCCceeeeeEEe
Q psy9673         112 FYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       112 ~~g~~~~~~G~~P~~~v~~  130 (162)
                      |.|+.+|+.|+||++||+.
T Consensus        51 w~g~~~g~~G~~P~~yv~~   69 (76)
T 2csi_A           51 YYGELNGQKGLVPSNFLEE   69 (76)
T ss_dssp             EEEEETTEEEEEEGGGCCB
T ss_pred             EEEEECCcEEEEehHHEEE
Confidence            4567788999999999975

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.41  E-value=0.0048  Score=35.98  Aligned_cols=23  Identities=35%  Similarity=0.889  Sum_probs=21.4

Q ss_pred             CCCeEEEEecCCCCceeeeeEEe
Q psy9673         108 DNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       108 ~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      +++||.|+.+|+.|+||++||+.
T Consensus        49 ~~~Ww~g~~~g~~G~~P~~yv~~   71 (79)
T 1uhc_A           49 NTEWWLAEVNGKKGYVPSNYIRK   71 (79)
T ss_dssp             CTTEEEEESSSCEEEEEGGGEEE
T ss_pred             CCCeEEEEeCCCEEEEchHHeEE
Confidence            57899999999999999999986

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=95.40  E-value=0.0051  Score=35.23  Aligned_cols=16  Identities=44%  Similarity=0.999  Sum_probs=13.3

Q ss_pred             EecCCCCceeeeeEEe
Q psy9673         115 EVNGTTGAFPMSYVQI  130 (162)
Q Consensus       115 ~~~~~~G~~P~~~v~~  130 (162)
                      +.+|+.|+||++||+.
T Consensus        46 ~~~g~~G~~P~~yv~~   61 (73)
T 2dbm_A           46 MLHGHSGFFPINYVEI   61 (73)
T ss_dssp             EETTEEEEEESSSEEE
T ss_pred             EECCCEEEechHHEEE
Confidence            3467889999999986

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.35  E-value=0.0048  Score=35.95  Aligned_cols=17  Identities=41%  Similarity=0.899  Sum_probs=14.0

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||+.
T Consensus        55 g~~~g~~G~~P~~yv~~   71 (79)
T 1x69_A           55 GVCKGRYGLFPANYVEL   71 (79)
T ss_dssp             EEETTEEEEEETTSEEE
T ss_pred             EEECCcEEEechHHEEE
Confidence            44568899999999986

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.32  E-value=0.0046  Score=37.27  Aligned_cols=20  Identities=45%  Similarity=1.080  Sum_probs=19.0

Q ss_pred             eEEEEecCCCCceeeeeEEe
Q psy9673         111 WFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       111 w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ||.|+.+|+.|+||.+||+.
T Consensus        42 Ww~g~~~g~~G~~P~~yv~~   61 (93)
T 1uff_A           42 WLYGSFQGNFGWFPCNYVEK   61 (93)
T ss_dssp             EEEEEETTEEEEEETTTEEE
T ss_pred             EEEEEECCCEEEechHHeEE
Confidence            99999999999999999986

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=95.28  E-value=0.011  Score=44.44  Aligned_cols=67  Identities=22%  Similarity=0.393  Sum_probs=49.2

Q ss_pred             CccccccccccccCCCEEcccCCccchhc--HHHHHhcCCCcccccccccccccccCCCcchhhhhhhhcc
Q psy9673           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKC--LEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGL   76 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~C--l~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~   76 (162)
                      -.|.||+=...+..+.+...|.|.-|..-  +.........+.||+|.+.+.  ..++.....+..++...
T Consensus       214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~--~~dL~ID~~~~~IL~~~  282 (360)
T 4fo9_A          214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA--YESLILDGLFMEILNDC  282 (360)
T ss_dssp             EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC--GGGEEEBHHHHHHHTTC
T ss_pred             EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC--HHHeEEcHHHHHHHHhC
Confidence            35789998888886677778999866543  233334456789999999887  56777777777777654

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.19  E-value=0.0049  Score=36.04  Aligned_cols=17  Identities=18%  Similarity=0.257  Sum_probs=13.8

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+++.|+||++||+.
T Consensus        46 g~~~g~~G~~P~~yv~~   62 (80)
T 2ekh_A           46 VRFGELEGWAPSHYLVL   62 (80)
T ss_dssp             EEETTEEEEEETTTEEC
T ss_pred             EEECCCEEEEEhHHeEE
Confidence            34557889999999986

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.08  E-value=0.0059  Score=34.64  Aligned_cols=16  Identities=19%  Similarity=0.463  Sum_probs=13.0

Q ss_pred             EecCCCCceeeeeEEe
Q psy9673         115 EVNGTTGAFPMSYVQI  130 (162)
Q Consensus       115 ~~~~~~G~~P~~~v~~  130 (162)
                      +.+|+.|+||++||+.
T Consensus        47 ~~~g~~G~~P~~yv~~   62 (70)
T 2ega_A           47 STSEEQGWVPATYLEA   62 (70)
T ss_dssp             ECSSCEEEEEGGGCEE
T ss_pred             EECCCEEEEehHHcEE
Confidence            3446889999999986

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.06  E-value=0.0046  Score=37.61  Aligned_cols=19  Identities=26%  Similarity=0.447  Sum_probs=16.3

Q ss_pred             EEEEecCCCCceeeeeEEe
Q psy9673         112 FYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       112 ~~g~~~~~~G~~P~~~v~~  130 (162)
                      |.|+.+|+.|+||++||+.
T Consensus        62 w~g~~~g~~G~~P~~yv~~   80 (97)
T 2csq_A           62 YRGETCARLGLIPCNMVSE   80 (97)
T ss_dssp             EEEEETTEEEEEETTTSEE
T ss_pred             EEEEECCcEEEEehHHeEE
Confidence            4677788999999999986

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=95.03  E-value=0.0086  Score=34.57  Aligned_cols=13  Identities=46%  Similarity=0.971  Sum_probs=11.4

Q ss_pred             CCCCceeeeeEEe
Q psy9673         118 GTTGAFPMSYVQI  130 (162)
Q Consensus       118 ~~~G~~P~~~v~~  130 (162)
                      |+.|+||++||+.
T Consensus        55 g~~G~~P~~yv~~   67 (76)
T 2ed1_A           55 ERKGVFPVSFVHI   67 (76)
T ss_dssp             TCEEEEEGGGEEE
T ss_pred             CCEEEEehHHeEE
Confidence            4789999999986

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=94.95  E-value=0.0061  Score=34.45  Aligned_cols=14  Identities=36%  Similarity=0.584  Sum_probs=12.3

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||+|||+.
T Consensus        45 ~g~~G~~Psnyv~~   58 (67)
T 2b86_A           45 ANRTGYVPSNYVER   58 (67)
T ss_dssp             TSCEEECCCCSEEE
T ss_pred             CCCEEEeChHHEeE
Confidence            57889999999986

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.75  E-value=0.0096  Score=35.47  Aligned_cols=17  Identities=47%  Similarity=0.817  Sum_probs=13.7

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+++.|+||++||+.
T Consensus        55 g~~~g~~G~~P~~yv~~   71 (88)
T 2cub_A           55 GSYNGQVGWFPSNYVTE   71 (88)
T ss_dssp             EEETTEEEEEEGGGEEE
T ss_pred             EEECCcEEEEehHHEEE
Confidence            33467889999999986

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.71  E-value=0.0083  Score=35.72  Aligned_cols=17  Identities=35%  Similarity=0.665  Sum_probs=13.5

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+..++.|+||++||+.
T Consensus        55 g~~~g~~G~~P~~yv~~   71 (88)
T 1x2q_A           55 GENHRGIGLFPSNFVTT   71 (88)
T ss_dssp             EEETTEEEEECGGGEES
T ss_pred             EEECCcEEEEehHHEEE
Confidence            34456789999999986

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=94.70  E-value=0.0076  Score=34.23  Aligned_cols=21  Identities=29%  Similarity=0.765  Sum_probs=19.0

Q ss_pred             CeEEEE-ecCCCCceeeeeEEe
Q psy9673         110 NWFYGE-VNGTTGAFPMSYVQI  130 (162)
Q Consensus       110 ~w~~g~-~~~~~G~~P~~~v~~  130 (162)
                      +||.|+ .+|+.|+||++||+.
T Consensus        42 ~Ww~g~~~~g~~G~~P~~yv~~   63 (71)
T 1u5s_A           42 EWWKCKNARGQVGLVPKNYVVV   63 (71)
T ss_dssp             CEEEEEETTTEEEEEETTSEEE
T ss_pred             CCEEEEeCCCCEEEEeHHHEEE
Confidence            599997 889999999999986

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=94.47  E-value=0.015  Score=34.37  Aligned_cols=24  Identities=29%  Similarity=0.291  Sum_probs=19.4

Q ss_pred             EEEE--CCeEEeecCCCeEeccCCCC
Q psy9673         136 YGEV--NGTTGAFPMSYVQFVWYLPI  159 (162)
Q Consensus       136 ~g~~--~g~~g~~p~~~~~~~~~~~~  159 (162)
                      .|+.  +|+.|+||++||+++..+..
T Consensus        43 ~g~~~~~g~~G~~P~~yv~~~~~~~~   68 (84)
T 4ag1_C           43 EARSLTTGETGYIPSNYVAPVDSIQG   68 (84)
T ss_dssp             EEEETTTCCEEEEEGGGEEETTTCC-
T ss_pred             EEEECCCCCEEEEehHHeEECCCccc
Confidence            3566  79999999999999877654

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=94.14  E-value=0.012  Score=33.61  Aligned_cols=14  Identities=36%  Similarity=0.544  Sum_probs=12.3

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||++||+.
T Consensus        48 ~g~~G~~P~~yv~~   61 (72)
T 2jw4_A           48 MNKTGFVPSNYVER   61 (72)
T ss_dssp             TSCEEEECTTSCEE
T ss_pred             CCCEEEEEhhHEEE
Confidence            57889999999986

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.89  E-value=0.02  Score=32.94  Aligned_cols=13  Identities=23%  Similarity=0.404  Sum_probs=11.4

Q ss_pred             CCCCceeeeeEEe
Q psy9673         118 GTTGAFPMSYVQI  130 (162)
Q Consensus       118 ~~~G~~P~~~v~~  130 (162)
                      ++.|+||++||+.
T Consensus        55 g~~G~~P~~yv~~   67 (75)
T 2egc_A           55 PFKGWVPSNYLEK   67 (75)
T ss_dssp             CEEEEEEGGGEEE
T ss_pred             CcEEEEehHHCEE
Confidence            5779999999986

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=93.83  E-value=0.25  Score=28.20  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=21.8

Q ss_pred             cCCeEEEEECCeEEeecCCCeEeccCCCCC
Q psy9673         131 DNNWFYGEVNGTTGAFPMSYVQFVWYLPII  160 (162)
Q Consensus       131 ~~~w~~g~~~g~~g~~p~~~~~~~~~~~~~  160 (162)
                      .++|+.-+.+|+.|++...|++...+.|-+
T Consensus        39 ~~~W~kV~~~g~~GwV~~~yl~~~~~~~~~   68 (74)
T 2krs_A           39 VDGWYEIRFNGKVGYASKSYITIVNEGSLE   68 (74)
T ss_dssp             ETTEEEEEETTEEEEECSSSEEESSSSCCC
T ss_pred             eCCEEEEEECCeEEEEEhHHcCCCCCccch
Confidence            346777777788888888888877766643

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.32  E-value=0.014  Score=33.81  Aligned_cols=20  Identities=30%  Similarity=0.697  Sum_probs=18.2

Q ss_pred             eEEEEec-CCCCceeeeeEEe
Q psy9673         111 WFYGEVN-GTTGAFPMSYVQI  130 (162)
Q Consensus       111 w~~g~~~-~~~G~~P~~~v~~  130 (162)
                      ||.|+.. |+.|+||++||+.
T Consensus        49 Ww~g~~~~g~~G~~P~~yv~~   69 (78)
T 2dl5_A           49 WVKARNKVGQVGYVPEKYLQF   69 (78)
T ss_dssp             EEEEECTTCCEEEEETTTSCC
T ss_pred             cEEEEeCCCCEEEEEhHHEEE
Confidence            9999976 8999999999986

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=93.14  E-value=0.1  Score=30.04  Aligned_cols=27  Identities=15%  Similarity=0.212  Sum_probs=16.3

Q ss_pred             CCeEEEEECCeEEeecCCCeEeccCCC
Q psy9673         132 NNWFYGEVNGTTGAFPMSYVQFVWYLP  158 (162)
Q Consensus       132 ~~w~~g~~~g~~g~~p~~~~~~~~~~~  158 (162)
                      ++|+.-+.+|+.|++...||+...+.+
T Consensus        42 ~~W~kV~~~g~~GwV~~~yl~~~~~~~   68 (76)
T 2kt8_A           42 GAFYKIEYKGSHGYVAKEYIKDIKDEV   68 (76)
T ss_dssp             TTEEEEEETTEEEEEEGGGEEEEECCC
T ss_pred             CCEEEEEECCEEEEEEhHHhCcCCCcc
Confidence            355666666666666666666655443

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=93.04  E-value=0.096  Score=29.96  Aligned_cols=36  Identities=25%  Similarity=0.582  Sum_probs=30.9

Q ss_pred             eccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          94 NFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        94 ~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      .+..|+.+.++... .+|++.+.+|..||+...|+..
T Consensus        26 ~l~~G~~v~v~~~~-~~W~kV~~~g~~GwV~~~yl~~   61 (74)
T 2krs_A           26 TLRNNDKVEIIKEV-DGWYEIRFNGKVGYASKSYITI   61 (74)
T ss_dssp             EEETTCEEEEEEEE-TTEEEEEETTEEEEECSSSEEE
T ss_pred             EECCCCEEEEEEEe-CCEEEEEECCeEEEEEhHHcCC
Confidence            47789999888874 5899999999999999999875

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=92.95  E-value=0.093  Score=30.40  Aligned_cols=48  Identities=29%  Similarity=0.656  Sum_probs=33.0

Q ss_pred             CCccccccccccccCC-CEEcc--cCCccchhcHHHHHhcC---CCcccccccc
Q psy9673           7 NDLLECSVCLDRLDTS-SKVLP--CQHTFCKKCLEEIVSSH---KELRCPECRV   54 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~-p~~~~--C~H~fC~~Cl~~~~~~~---~~~~Cp~Cr~   54 (162)
                      ...|.|.+|.+.|.+. -+..|  =.|.||.-|-+..++.+   ....||.=.+
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~k   66 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEK   66 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSC
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCc
Confidence            4678999999999743 33333  46999999998877642   3345665444

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=92.85  E-value=0.072  Score=39.73  Aligned_cols=32  Identities=19%  Similarity=0.445  Sum_probs=22.6

Q ss_pred             CCCceeeeeEEecCCeEEEEE---CCeEEeecCCC
Q psy9673         119 TTGAFPMSYVQIDNNWFYGEV---NGTTGAFPMSY  150 (162)
Q Consensus       119 ~~G~~P~~~v~~~~~w~~g~~---~g~~g~~p~~~  150 (162)
                      +.|-+=.-.-..|.+||.|+.   +|..|+||+++
T Consensus        65 ~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           65 EAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             cCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            344433322234789999999   68899999986

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=92.64  E-value=0.27  Score=28.21  Aligned_cols=36  Identities=14%  Similarity=0.316  Sum_probs=30.9

Q ss_pred             eccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          94 NFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        94 ~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      .+..|+.+.++.. ..+|+..+.+|..||+...|+..
T Consensus        28 ~l~~G~~v~vl~~-~~~W~kV~~~g~~GwV~~~yl~~   63 (76)
T 2kt8_A           28 SLSGNTKVTIVGE-EGAFYKIEYKGSHGYVAKEYIKD   63 (76)
T ss_dssp             EECTTCEEEEEEE-ETTEEEEEETTEEEEEEGGGEEE
T ss_pred             EECCCCEEEEEEE-eCCEEEEEECCEEEEEEhHHhCc
Confidence            4778999988887 46899999999999999999875

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=92.32  E-value=0.065  Score=31.96  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=16.9

Q ss_pred             CCeEEEEecCCCCceeeeeEEe
Q psy9673         109 NNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       109 ~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      +.|| ...+|+.|++|++|+++
T Consensus        55 srW~-Vdtgg~~GyvPs~yLe~   75 (92)
T 1ug1_A           55 NRWL-IDNGVTKGFVYSSFLKP   75 (92)
T ss_dssp             SEEE-EECSSSEEEEEGGGEEE
T ss_pred             cceE-EECCCcEEeeEhhhceE
Confidence            3566 44589999999999987

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=90.12  E-value=0.27  Score=27.65  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=13.3

Q ss_pred             CCeEEEEECCeEEeecCCCeEec
Q psy9673         132 NNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       132 ~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ++|+.-+.+|+.|++...|++..
T Consensus        41 ~~W~~V~~~G~~GwV~~~~l~~~   63 (70)
T 2kq8_A           41 SGWSKINYNGQTGYIGTRYLSKL   63 (70)
T ss_dssp             TTEEEEEETTEEEEEETTSCSCC
T ss_pred             CCEEEEEECCEEEEEEhHHccch
Confidence            35555555566666666665544

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=90.00  E-value=0.046  Score=30.95  Aligned_cols=38  Identities=18%  Similarity=0.282  Sum_probs=30.0

Q ss_pred             eccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecC
Q psy9673          94 NFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDN  132 (162)
Q Consensus        94 ~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~  132 (162)
                      .+..|+.+.++.. ..+|++.+.+|..||+...|+...+
T Consensus        27 ~l~~G~~v~v~~~-~~~W~~V~~~G~~GwV~~~~l~~~~   64 (70)
T 2kq8_A           27 ALPQGQKVQVISE-NSGWSKINYNGQTGYIGTRYLSKLE   64 (70)
T ss_dssp             CCCSSSSCCCCEE-ETTEEEEEETTEEEEEETTSCSCCC
T ss_pred             EECCCCEEEEEEe-cCCEEEEEECCEEEEEEhHHccchh
Confidence            3667777777766 4689999999999999998886543

>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}

Probab=89.72  E-value=0.67  Score=34.08  Aligned_cols=60  Identities=18%  Similarity=0.166  Sum_probs=47.1

Q ss_pred             ccCCCEEEEeEecCCCeEEEEe---------cCCCCceeeeeEEe-----------------------------------
Q psy9673          95 FKKDDIVILRRKIDNNWFYGEV---------NGTTGAFPMSYVQI-----------------------------------  130 (162)
Q Consensus        95 ~~~gd~i~v~~~~~~~w~~g~~---------~~~~G~~P~~~v~~-----------------------------------  130 (162)
                      +..|+.+.|+++ +.+|...+.         +|-.||++..++..                                   
T Consensus        64 ll~Ge~V~Vl~~-~~~W~~V~~~~q~~~~~~dGy~GWV~~~~L~~~~~~~~~~~~~~~~Vt~~~~~l~~~p~~~~~~~~l  142 (311)
T 3h41_A           64 ALLGQEVTVVDK-KGDWVKVLVHGQPTPRNEEGYPGWMPEKQLTYNQEFADKTNEPFVLVTKPTAILYINPSEKHKSLEV  142 (311)
T ss_dssp             EETTCEEEEEEE-ETTEEEEEETTCCBTTBSSCEEEEEEGGGEECCHHHHHTTTSCEEEECSSEEEEEESSCTTCCEEEE
T ss_pred             ecCCCEEEEEEe-eCCEEEEEECCcccccCCCCcEEEEEHHHcCccccccccccCCeEEEEeCceEEeccCCCCCceEEE
Confidence            445999999886 578999985         66689998754431                                   


Q ss_pred             -----------cCCeEEEEE-CCeEEeecCCCeEecc
Q psy9673         131 -----------DNNWFYGEV-NGTTGAFPMSYVQFVW  155 (162)
Q Consensus       131 -----------~~~w~~g~~-~g~~g~~p~~~~~~~~  155 (162)
                                 +++|+...+ +|+.|+++..++.+..
T Consensus       143 ~~Gt~Lpv~~e~~~w~~V~~p~G~~G~V~~~~l~~~~  179 (311)
T 3h41_A          143 SYNTRLPLLSEDTISYRVLLPNGQKAWLRKNDGTFYR  179 (311)
T ss_dssp             ETTCEEEEEEECSSEEEEECTTSCEEEEEGGGEEEES
T ss_pred             eCCCEEEEEeecCCEEEEECCCCccceeccccccccc
Confidence                       678998877 7889999999998764

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=89.19  E-value=0.18  Score=36.63  Aligned_cols=28  Identities=11%  Similarity=-0.038  Sum_probs=20.9

Q ss_pred             cCCeEEEEE-CCeEEeecCCCeEeccCCC
Q psy9673         131 DNNWFYGEV-NGTTGAFPMSYVQFVWYLP  158 (162)
Q Consensus       131 ~~~w~~g~~-~g~~g~~p~~~~~~~~~~~  158 (162)
                      +..||..+. +|..|++|++|+....|.|
T Consensus       227 ~~~wW~v~~~~G~~g~vPs~~~~ip~p~~  255 (283)
T 3pe0_A          227 QPSHWKVLSSSGSEAAVPSVCFLVPPPNQ  255 (283)
T ss_dssp             STTEEEEECC---EEEEEGGGEECCSCCH
T ss_pred             CCCceEEEcCCCCEeeccceEEeeCCCCH
Confidence            447999998 6889999999999876643

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=89.05  E-value=0.2  Score=34.22  Aligned_cols=36  Identities=31%  Similarity=0.500  Sum_probs=26.4

Q ss_pred             CCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673         119 TTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       119 ~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      +.|.+-.-.-..+.+||.+...|+.|++|.+|++..
T Consensus        34 ~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           34 EEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ   69 (222)
T ss_dssp             CTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHH
T ss_pred             cCCCEEEEeccccchhHhcccCCcceeechhhcccc
Confidence            345443323334889999999999999999998643

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=88.43  E-value=0.33  Score=28.44  Aligned_cols=47  Identities=19%  Similarity=0.445  Sum_probs=30.8

Q ss_pred             CCCccccccccccccCCCEEc---ccCCccchhcHHHH------------Hhc--CCCcccccccc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVL---PCQHTFCKKCLEEI------------VSS--HKELRCPECRV   54 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~---~C~H~fC~~Cl~~~------------~~~--~~~~~Cp~Cr~   54 (162)
                      ...+..|.||...-. . ..+   .|+-.|+..|+.+.            ...  ...++|+.|..
T Consensus        12 ~~~D~~C~VC~~~t~-~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen   75 (89)
T 1wil_A           12 VVNDEMCDVCEVWTA-E-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN   75 (89)
T ss_dssp             CCCSCCCTTTCCCCS-S-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred             CCCCcccCccccccc-c-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence            345778999984433 2 223   38899999999986            111  12379999944

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=87.83  E-value=0.23  Score=40.87  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=19.3

Q ss_pred             cCCeEEEEEC------CeEEeecCCCeEe
Q psy9673         131 DNNWFYGEVN------GTTGAFPMSYVQF  153 (162)
Q Consensus       131 ~~~w~~g~~~------g~~g~~p~~~~~~  153 (162)
                      +.+||.|+..      +..|+||++|++.
T Consensus       464 ~~~WW~a~~~~~~~~~~~~G~iPs~~~~e  492 (721)
T 2xkx_A          464 DEEWWQARRVHSDSETDDIGFIPSKRRVE  492 (721)
T ss_pred             CCCeEEEEECCCCCccCccceeecHHHHH
Confidence            7899999985      4579999999853

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=87.56  E-value=0.24  Score=27.68  Aligned_cols=46  Identities=26%  Similarity=0.422  Sum_probs=31.9

Q ss_pred             CCccccccccccccCCCEEc--ccCCccchhcHHHHHhc--CCCccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVL--PCQHTFCKKCLEEIVSS--HKELRCPECRVL   55 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~--~C~H~fC~~Cl~~~~~~--~~~~~Cp~Cr~~   55 (162)
                      ...-.|.||.+-=  + .++  .|...|+..|+...+..  .+.+.|+.|...
T Consensus        10 ~~~~~C~vC~~~~--~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~   59 (66)
T 2lri_C           10 APGARCGVCGDGT--D-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD   59 (66)
T ss_dssp             CTTCCCTTTSCCT--T-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred             CCCCCcCCCCCCC--e-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence            3455799998532  2 333  48889999999766654  345899999764

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=87.06  E-value=0.19  Score=28.73  Aligned_cols=51  Identities=20%  Similarity=0.452  Sum_probs=34.2

Q ss_pred             CCccccccccccccCCCEEc--ccCCccchhcHHHHHhcC--CCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVL--PCQHTFCKKCLEEIVSSH--KELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~--~C~H~fC~~Cl~~~~~~~--~~~~Cp~Cr~~~~   57 (162)
                      .+...|.+|.........+.  .|..-|+..|+.......  ..+.||.|...+.
T Consensus        16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~   70 (75)
T 2k16_A           16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK   70 (75)
T ss_dssp             CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred             CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence            34557999987765333444  477889999986443322  4589999987654

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=85.82  E-value=0.18  Score=38.40  Aligned_cols=22  Identities=14%  Similarity=0.096  Sum_probs=18.1

Q ss_pred             cCCeEEEEECC------eEEeecCCCeE
Q psy9673         131 DNNWFYGEVNG------TTGAFPMSYVQ  152 (162)
Q Consensus       131 ~~~w~~g~~~g------~~g~~p~~~~~  152 (162)
                      +.+||.++.-|      ..|++|++|++
T Consensus       141 d~~wW~a~~~~~~~~~~~~G~IPs~~~~  168 (391)
T 3tsz_A          141 KLGSWLAIRIGKNHKEVERGIIPNKNRA  168 (391)
T ss_dssp             SSSEEEEEEECGGGCEEEEEEEECHHHH
T ss_pred             CCCeEEEEEeCCCCCcccCCEecCHHHH
Confidence            56899999843      48999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	1e-12
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	6e-11
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	7e-11
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	3e-10
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	4e-10
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	4e-10
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	4e-10
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-04
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	6e-10
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	7e-10
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	1e-09
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	3e-09
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	3e-09
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-09
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	9e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	1e-08
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-08
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	3e-08
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	3e-08
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	4e-08
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	4e-08
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	4e-08
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	5e-08
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	7e-08
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	8e-08
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	8e-08
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	2e-07
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	2e-07
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	3e-07
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	4e-07
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	7e-07
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	7e-07
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	7e-07
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	8e-07
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	1e-06
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-06
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	2e-06
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	3e-06
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	3e-06
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	4e-06
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	4e-06
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	5e-06
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	5e-06
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	6e-06
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	1e-05
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	1e-05
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-05
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	3e-05
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	4e-05
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	5e-05
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	5e-05
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	8e-05
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	1e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	2e-04
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	4e-04
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	4e-04
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	5e-04
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	8e-04
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	0.002

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 1e-12
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHK-ELRCPECRVLVECKVDELP 64
          +  +LEC +CL+ +        C H FCK C+ ++++  K   +CP C+   +     L 
Sbjct: 18 MQKILECPICLELI-KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCK--NDITKRSLQ 74

Query: 65 PNVLLMRILEGLFPLVVSF 83
           +    +++E L  ++ +F
Sbjct: 75 ESTRFSQLVEELLKIICAF 93

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 6e-11
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+  K DI+ + R  +  W+ G +NG TG FP +YV+ 
Sbjct: 26  ELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVRE 64

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (127), Expect = 7e-11
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQID 131
           +L FK  +++ +    D NW+ GE +  TG FP ++V  D
Sbjct: 18  ELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD 57

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (123), Expect = 3e-10
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L F++ D + +    D NW+ G  +G TG FP +YV 
Sbjct: 17  ELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 54

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 50.8 bits (122), Expect = 4e-10
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L FK+ D++ L  K D NW+ G++N   G FP +YV 
Sbjct: 18  ELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 4e-10
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           DL F++ DI+++  K++  W  GE  G  G FP  +V+
Sbjct: 21  DLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 4e-10
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+F K  ++ +  K D +W+ GE+NG TG FP +YV++
Sbjct: 50  ELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 88

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 6e-04
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 46/84 (54%)

Query: 117 NGTTGAFPMSYVQI---------------------------------------------- 130
           +G  G FP S+V++                                              
Sbjct: 6   SGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKD 65

Query: 131 DNNWFYGEVNGTTGAFPMSYVQFV 154
           D +W+ GE+NG TG FP +YV+  
Sbjct: 66  DPDWWQGEINGVTGLFPSNYVKMT 89

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 6e-10
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
          L  LL CS C + L     +  C+H FC  C+ + + +     CP C       + +L  
Sbjct: 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG----CPVCY--TPAWIQDLKI 72

Query: 66 NVLLMRILE 74
          N  L  +++
Sbjct: 73 NRQLDSMIQ 81

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 50.3 bits (120), Expect = 7e-10
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
           C +CL+     S  LPC H FC  C+   +  +    CP C+V VE
Sbjct: 7  RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP--TCPLCKVPVE 51

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 1e-09
 Identities = 9/38 (23%), Positives = 20/38 (52%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +++  + + V +  K+ + W+    +  TG FP  Y+Q
Sbjct: 30  EVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 67

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (116), Expect = 3e-09
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +L F+  ++V +    + +W+ G ++   G FP +YV 
Sbjct: 17  ELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.5 bits (116), Expect = 3e-09
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           ++  KK DI+ L    + +W+  EVN   G  P +YV+ 
Sbjct: 16  EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 54

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 5e-09
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           DL F + + +++ +K D  W+ G +   +G FP +YV+ 
Sbjct: 24  DLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKP 61

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 9e-09
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+FK+ DI+ +L  + D NW+  E+NG  G  P +Y+++
Sbjct: 16  ELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 55

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 1e-08
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 6/46 (13%)

Query: 8  DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
            L C  C        K+LPC HT C  CLE          CP C+
Sbjct: 5  QFLRCQQCQAEA-KCPKLLPCLHTLCSGCLEASGMQ-----CPICQ 44

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 1e-08
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
            LNF K DI+ +      NW++GEV+G  G FP SYV+I
Sbjct: 26  HLNFSKHDIITVLE-QQENWWFGEVHGGRGWFPKSYVKI 63

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (111), Expect = 2e-08
 Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 21/87 (24%)

Query: 6  LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
              + C +C   L        C+H FC+ C+   +       CP CR    C   +L  
Sbjct: 20 FVKSISCQICEHIL-ADPVETSCKHLFCRICILRCLKVMGS-YCPSCR--YPCFPTDLES 75

Query: 66 NVLLMRILEGLFPLVVSFIRFFLNILD 92
           V                 + FLNIL+
Sbjct: 76 PV-----------------KSFLNILN 85

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 3e-08
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 92  DLNFKKDDIVILRRKID-NNWFYGEVNGTTGAFPMSYVQI 130
           +L+F    +           W  G +NG TG  P +YV+ 
Sbjct: 26  ELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (109), Expect = 3e-08
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNG-TTGAFPMSYVQI 130
           +L F K  I+    K +  W+ G+  G     FP +YV+ 
Sbjct: 22  ELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEE 61

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (108), Expect = 4e-08
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYVQ 129
           DL FKK DI+ +R K +  W+  E   G  G  P+ YV+
Sbjct: 17  DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 4e-08
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 92  DLNFKKDDIVILRRKID----NNWFYGEVNGTTGAFPMSYVQ 129
           +L+   +  + +    D      W+  EVNG  G  P +Y++
Sbjct: 29  ELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIR 70

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 4e-08
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 7  NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
          +    C +C +      K+ PC H  C  CL     S  +  CP CR
Sbjct: 21 STFQLCKICAEND-KDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFCR 65

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (108), Expect = 5e-08
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYG-EVNGTTGAFPMSYVQ-IDNN 133
           DL  +K D   +  + +  W+   + NG  G  P +YV   +++
Sbjct: 24  DLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAEDS 67

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (106), Expect = 7e-08
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
           +++FK  D +I  + ID  W YG V   G TG  P +YV+ 
Sbjct: 19  EVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEA 59

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (106), Expect = 8e-08
 Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQIDN 132
           +L F ++D +I    +D++W+ GE+  +G+ G FP +YV + N
Sbjct: 16  ELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 58

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (106), Expect = 8e-08
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDIVILRRKID--NNWFYGEVNGTTGAFPMSYVQI 130
           DL F+K D++ + +K D  N+W+ G VNG  G FP +YV++
Sbjct: 17  DLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 57

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 2e-07
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQIDN 132
           DL+FKK + + +    + +W+       G TG  P +YV   +
Sbjct: 18  DLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 2e-07
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 92  DLNFKKDDIVILRRKIDNN---WFYGEVNGTTGAFPMSYVQI 130
           +L  K+ D + +  + D +   W++  +N   G  P + + +
Sbjct: 20  ELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 61

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (101), Expect = 3e-07
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
           DL+F K +   +    + +W+       G TG  P +YV 
Sbjct: 16  DLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 4e-07
 Identities = 9/38 (23%), Positives = 20/38 (52%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
           +++  + + V +  K+ + W+    +  TG FP  Y+Q
Sbjct: 16  EVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 53

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (100), Expect = 7e-07
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYG-EVNGTTGAFPMSYVQI 130
           DL  ++    I+  K D +W+   +  G+ G  P +YV  
Sbjct: 18  DLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTG 57

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 7e-07
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFY-GEVNGTTGAFPMSYVQIDN 132
           DL+F+K D +++  +    W          G  P +YV   +
Sbjct: 20  DLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 61

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 42.2 bits (99), Expect = 7e-07
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 6  LNDLLECSVCLDRLDTSSKV---LPCQHTFCKKCLEEIVSSHKELRCPECR 53
          ++D +EC+VCL  L+   +      C H F  +C++  + SH    CP CR
Sbjct: 2  MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS--TCPLCR 50

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 8e-07
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 10 LECSVCLDRLDTSSKV---LPCQHTFCKKCLEEIVSSHKELRCPECR 53
          +EC +C++ L+          C +  C+ C   I  + +   CP CR
Sbjct: 1  VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR-TDENGLCPACR 46

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 1e-06
 Identities = 7/41 (17%), Positives = 21/41 (51%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDN 132
           ++     D+V +  K ++ W++ ++    G  P S+++  +
Sbjct: 18  EMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD 58

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 1e-06
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGT-----TGAFPMSYVQI 130
            L+     ++++ +K  + W+ GE+         G FP S+V++
Sbjct: 23  QLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 2e-06
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFY-GEVNGTTGAFPMSYVQ 129
           DL F+K + + +  +    W       G  G  P ++V 
Sbjct: 22  DLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVA 60

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 3e-06
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 24  KVLPCQHTFCKKCLEEIVSS---HKELRCPECRVLVECKVDELPP 65
           ++  C H F   CL  +  +      L+CP C+ +   K    P 
Sbjct: 57  RLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 3e-06
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
           +L       + +   +D + FY     +G  G  P ++V 
Sbjct: 39  ELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVD 78

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (95), Expect = 4e-06
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYG---EVNGTTGAFPMSYVQI 130
            L+F + D++ L    + + +     +     G FP SY ++
Sbjct: 24  LLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (94), Expect = 4e-06
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 92  DLNFKKDDIVILRRKID------NNWFYGEVNGTTGAFPMSYVQI 130
           ++  KK D++ +  K D      + W     NG  G  P +Y++I
Sbjct: 22  EVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 66

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (94), Expect = 5e-06
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 92  DLNFKKDDIV-ILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
            L     DIV + + + ++NW+ G        G FP + V 
Sbjct: 26  FLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (93), Expect = 5e-06
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 92  DLNFKKDDIVILRRKIDN-NWFYGEVNGTTGAFPMSYVQIDN 132
            L+  K + + +     N  W   +     G  P +Y+   N
Sbjct: 16  TLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN 57

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (92), Expect = 6e-06
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
           +L+  KDD++ +       W     +G +G  P + + I
Sbjct: 17  ELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDI 55

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPMSYV 128
            ++F+  D + ++ K +N+W+ G +       G  P    
Sbjct: 44  AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK 83

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 92  DLNFKKDDIVI-LRRKIDNNWFYGEV-NGTTGAFPMSYVQI 130
           DL F K D++  +    D NW+  +   G  G  P +YVQ 
Sbjct: 22  DLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 62

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 2e-05
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 21/63 (33%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYV 151
           +++F   DI+ +  K                           W YG   G  G FP +YV
Sbjct: 21  EMSFNSGDIIQVDEKTVGEP---------------------GWLYGSFQGNFGWFPCNYV 59

Query: 152 QFV 154
           + +
Sbjct: 60  EKM 62

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.4 bits (89), Expect = 3e-05
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 18/68 (26%)

Query: 92  DLNFKKDDIVILRRK-----IDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAF 146
           +L  K  D+V++         D  W  G                 +   + E+    G F
Sbjct: 28  ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKES-------------DWNQHKELEKCRGVF 74

Query: 147 PMSYVQFV 154
           P ++ + V
Sbjct: 75  PENFTERV 82

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 4e-05
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
           +L  + D+   L    + +W+  +  NG  G  P SY+ 
Sbjct: 14  ELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 52

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPMSYVQ 129
            ++F   D + ++ K +N+W+ G +       G  P     
Sbjct: 46  AVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRL 86

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 5e-05
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 12/75 (16%)

Query: 7  NDLLECSVCLDRLDTSS--KVLPCQHTFCKKCLEEIVSSH------KELRCPECRVLVEC 58
          +    C +CL          +  CQ  FC  CL++ V           + CP+      C
Sbjct: 3  SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA----C 58

Query: 59 KVDELPPNVLLMRIL 73
                    +  ++
Sbjct: 59 PKQGHLQENEIECMV 73

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 36.8 bits (84), Expect = 8e-05
 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 4/50 (8%)

Query: 8  DLLECSVCLDRLD----TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
          D+  C +C + L      +           + CL   ++  +   C  C 
Sbjct: 5  DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (84), Expect = 1e-04
 Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 92  DLNFKKDDIVILRRKIDNNW---FYGEVNGTTGAFPMSYVQI 130
           ++     D + L  +   +       +  G TG  P +Y++I
Sbjct: 15  EITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 56

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 2e-04
 Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 5/50 (10%)

Query: 8  DLLECSVCLDRL----DTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
          D   C  C             V  C HT C+ C++ +        CPEC 
Sbjct: 2  DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLF-VRGAGNCPECG 50

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 4e-04
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 20/70 (28%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYV 151
           +LNF+K + + +  K +N+                       W      G  G  P +YV
Sbjct: 22  ELNFEKGETMEVIEKPEND--------------------PEWWKCKNARGQVGLVPKNYV 61

Query: 152 QFVWYLPIIN 161
             +   P ++
Sbjct: 62  VVLSDGPALH 71

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 4e-04
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYG--EVNGTTGAFPMS 149
           D++    DI+ + +       + +               +  W  G  E  G  G FP +
Sbjct: 19  DIDLHLGDILTVNKGSLVALGFSD--------GQEARPEEIGWLNGYNETTGERGDFPGT 70

Query: 150 YVQFV 154
           YV+++
Sbjct: 71  YVEYI 75

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.1 bits (80), Expect = 5e-04
 Identities = 7/67 (10%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 8  DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNV 67
          +   C + L+ +     ++    T+ +  +++ + +  +                L PN 
Sbjct: 7  EYFRCPISLELM-KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQE---TLLHAGLTPNY 62

Query: 68 LLMRILE 74
          +L  ++ 
Sbjct: 63 VLKSLIA 69

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 8e-04
 Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 6/44 (13%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV------NGTTGAFPMSYVQ 129
            L+F+  D++ +    D  W+              G  P     
Sbjct: 22  ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV 65

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 92  DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQIDN 132
            +NF+  D + ++ K  N+W+ G +   G   AF  S  ++++
Sbjct: 46  GVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLES 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.67
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.66
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.65
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.59
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.58
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.47
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.46
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.45
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.45
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.45
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.44
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.43
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.43
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.42
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.39
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.39
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.37
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.37
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.35
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.35
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.34
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.31
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.31
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.31
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.31
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.3
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.3
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.29
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.29
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.28
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.26
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.25
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.24
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.24
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.24
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.24
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.23
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.22
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.21
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.21
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.2
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.2
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.2
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.19
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.17
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.17
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.16
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.16
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.14
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.13
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.11
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.11
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.11
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.11
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.05
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.05
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.03
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.03
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.01
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	98.92
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	98.91
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	98.91
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	98.89
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	98.84
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	98.8
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	98.78
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	98.76
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	98.75
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	98.71
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	98.66
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	98.66
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	98.65
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	98.63
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	98.58
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	98.58
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	98.55
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	98.51
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.45
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.42
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	98.4
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	98.39
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	98.31
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	98.29
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.17
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	98.09
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	98.04
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	97.75
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	97.73
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	97.66
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	97.58
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	97.55
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	97.34
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	96.98
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.53
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	95.82
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	95.52
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	95.5
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	95.27
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	95.07
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	95.04
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	92.84
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	92.36
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	91.49
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	88.65
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	88.51
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	88.51
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	87.92
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	86.88
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	86.62
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	86.47
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	84.13
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	82.87
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	82.59
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	82.22
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	81.17
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	80.06

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.2e-17  Score=99.11  Aligned_cols=70  Identities=17%  Similarity=0.304  Sum_probs=60.9

Q ss_pred             cCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhcccc
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~   78 (162)
                      .+-++|.|+||++++. +|++++|||+||..||.+|+...+ ..||.|+..+.  ...+.+|..++++++.+..
T Consensus         3 eiP~~l~CpIc~~l~~-dPv~~~cGhtfc~~ci~~~l~~~~-~~cP~c~~~l~--~~~l~pN~~L~~~I~~~l~   72 (80)
T d2c2la2           3 DIPDYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLT--QEQLIPNLAMKEVIDAFIS   72 (80)
T ss_dssp             CCCSTTBCTTTCSBCS-SEEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCC--GGGCEECHHHHHHHHHHHT
T ss_pred             CCCccccCcCcCchhh-hhcccCCcCeecHHHHHHHHhcCC-ccCCCcccccc--ccccccHHHHHHHHHHHHH
Confidence            4568999999999999 889999999999999999997543 47999999887  5678899999999988654

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.8e-18  Score=106.03  Aligned_cols=69  Identities=25%  Similarity=0.680  Sum_probs=57.9

Q ss_pred             CCCccccccccccccCCCEEcccCCccchhcHHHHHhcC-CCcccccccccccccccCCCcchhhhhhhhccc
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH-KELRCPECRVLVECKVDELPPNVLLMRILEGLF   77 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~-~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~   77 (162)
                      +++.|.|+||++++. +|++++|||+||..||.+|+... +...||.||..+.  ...+.+|..+.++++.+.
T Consensus        18 l~~~l~CpIC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~--~~~l~~n~~l~~~ve~l~   87 (103)
T d1jm7a_          18 MQKILECPICLELIK-EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT--KRSLQESTRFSQLVEELL   87 (103)
T ss_dssp             HHHHTSCSSSCCCCS-SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC--TTTCBCCCSSSHHHHHHH
T ss_pred             cccCcCCCccCchhC-CeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCC--hhhCCcCHHHHHHHHHHH
Confidence            456789999999999 88999999999999999999764 3458999999987  567888888877777654

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.65  E-value=2.7e-17  Score=97.01  Aligned_cols=70  Identities=13%  Similarity=0.369  Sum_probs=60.9

Q ss_pred             cCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhcccc
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~   78 (162)
                      .+.++|.|+||++++. +|++++|||+||..||.+|+..+. ..||.|+..+.  ...+.+|..++++++.+..
T Consensus         4 eiP~~l~CpIc~~~m~-dPV~~~cgh~fc~~ci~~~~~~~~-~~cP~~~~~l~--~~~l~pN~~L~~~I~~~~~   73 (78)
T d1t1ha_           4 EFPEYFRCPISLELMK-DPVIVSTGQTYERSSIQKWLDAGH-KTCPKSQETLL--HAGLTPNYVLKSLIALWCE   73 (78)
T ss_dssp             CCSSSSSCTTTSCCCS-SEEEETTTEEEEHHHHHHHHTTTC-CBCTTTCCBCS--SCCCEECTTTHHHHHHHHH
T ss_pred             CCCccCCCcCcCchhh-CceEccCCCcchHHHHHHHHHHCC-CCCCcccccCC--cccccchHHHHHHHHHHHH
Confidence            4678999999999999 889999999999999999997543 47999999987  5678899999999987643

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.3e-16  Score=95.03  Aligned_cols=48  Identities=25%  Similarity=0.649  Sum_probs=42.5

Q ss_pred             CccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +.+.|+||.+.+. +|++++|||+||..||.+|+..++ ..||.||.++.
T Consensus        22 ~~l~C~IC~~~~~-~pv~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~p~~   69 (86)
T d1rmda2          22 KSISCQICEHILA-DPVETSCKHLFCRICILRCLKVMG-SYCPSCRYPCF   69 (86)
T ss_dssp             HHTBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCC
T ss_pred             cCcCCccCCcchh-cceecCCCChhhHHHHHHHHhhCC-CcCcccCCCCC
Confidence            5578999999999 899999999999999999997543 37999999886

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.2e-17  Score=98.81  Aligned_cols=67  Identities=28%  Similarity=0.617  Sum_probs=56.5

Q ss_pred             cCCCccccccccccccCCCEEc-ccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhcccc
Q psy9673           5 TLNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP   78 (162)
Q Consensus         5 ~~~~~l~C~iC~~~~~~~p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~   78 (162)
                      .+++.+.|+||+++|. +|+++ +|||+||..||.+|+..    .||.||..+.  ..++.+|..+..+++.+..
T Consensus        18 ~l~~~l~C~IC~~~~~-~pv~~~~CgH~fC~~Ci~~~~~~----~CP~Cr~~~~--~~~l~~n~~l~~lv~~~~~   85 (97)
T d1jm7b_          18 RLEKLLRCSRCTNILR-EPVCLGGCEHIFCSNCVSDCIGT----GCPVCYTPAW--IQDLKINRQLDSMIQLCSK   85 (97)
T ss_dssp             HHHHTTSCSSSCSCCS-SCBCCCSSSCCBCTTTGGGGTTT----BCSSSCCBCS--CSSCCCCHHHHHHHHHHHH
T ss_pred             hhhhcCCCccCCchhh-cCceeCCCCCchhHHHHHHHHhc----cccccCCcCc--hhhCcccHHHHHHHHHHHH
Confidence            3457789999999999 77764 89999999999999853    5999999887  6788999999998887654

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.47  E-value=7.4e-15  Score=84.01  Aligned_cols=46  Identities=37%  Similarity=0.912  Sum_probs=40.0

Q ss_pred             cccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673          10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        10 l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      -.|+||++.+.+.++.++|||+||..|+.+|+..+.  .||+||..+.
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~--~CP~CR~~i~   51 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP--TCPLCKVPVE   51 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC--STTTTCCCCC
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCC--cCCCCCcchH
Confidence            359999999985567789999999999999998765  8999999764

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=9.8e-14  Score=76.57  Aligned_cols=52  Identities=37%  Similarity=0.720  Sum_probs=40.7

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ++++++|+     ..+|+|.+||++.|+.+.+.                     +++||.|+.+|++|+||++|||.+
T Consensus         2 P~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~---------------------~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           2 PKAVALYSFAGEESGDLPFRKGDVITILKKSDS---------------------QNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSC---------------------TTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CeEEEccCCCCCCCCCccCCCCCEEEEEEeecC---------------------CCCEEEEEECCcEEEEcHHHEEEC
Confidence            56788887     78999999999999988653                     235777777777778888877764

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.1e-14  Score=88.99  Aligned_cols=67  Identities=18%  Similarity=0.191  Sum_probs=58.8

Q ss_pred             CccccccccccccCCCEEcccC-CccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccc
Q psy9673           8 DLLECSVCLDRLDTSSKVLPCQ-HTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPL   79 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~C~-H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~   79 (162)
                      ++|.||||++++. +|++++|+ |+||..||.+|+..++  .||+|+.++.  ...+.+|..++..++.+...
T Consensus        21 ~~f~CPI~~~lm~-dPV~~~~~~~ty~r~~I~~~l~~~~--~~P~~~~~l~--~~~L~pN~~Lr~~I~~~~~~   88 (98)
T d1wgma_          21 DEFLDPIMSTLMC-DPVVLPSSRVTVDRSTIARHLLSDQ--TDPFNRSPLT--MDQIRPNTELKEKIQRWLAE   88 (98)
T ss_dssp             TTTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHTTTSC--BCTTTCSBCC--TTTSEECHHHHHHHHHHHHH
T ss_pred             HHhCCcCchhHHH-HHHhcccccchhhHHHHHHHHHhcC--Cccccccccc--chhhcchHHHHHHHHHHHHH
Confidence            5899999999999 88999876 5899999999998655  8999999987  67889999999998887654

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=9.4e-15  Score=80.29  Aligned_cols=45  Identities=16%  Similarity=0.166  Sum_probs=40.3

Q ss_pred             cccccccccccCCCEEc-ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673          10 LECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        10 l~C~iC~~~~~~~p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      |.|+||++.+. +|+.+ .|||+||..||.+|+..++  .||+||.++.
T Consensus         1 l~C~Ic~~~~~-~Pv~~~~cGh~fc~~cI~~~l~~~~--~CP~c~~~l~   46 (56)
T d2baya1           1 MLCAISGKVPR-RPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLS   46 (56)
T ss_dssp             CCCTTTCSCCS-SEEEETTTTEEEEHHHHHHHHHHHS--BCTTTCCBCC
T ss_pred             CCCccCCchHH-hcCccCCCCCcccHHHHHHHHhhcc--CCCccCCcCC
Confidence            57999999999 77776 6999999999999999766  8999999886

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.45  E-value=2e-14  Score=78.51  Aligned_cols=49  Identities=39%  Similarity=0.931  Sum_probs=41.0

Q ss_pred             CCCccccccccccccC--CCEEc-ccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673           6 LNDLLECSVCLDRLDT--SSKVL-PCQHTFCKKCLEEIVSSHKELRCPECRVLV   56 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~--~p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~   56 (162)
                      ++++..|+||++.|..  ....+ +|+|.||..|+.+|+..+.  .||+||.++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~--~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS--TCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC--SCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCC--cCCCCCCEe
Confidence            5778899999999963  34455 6999999999999998765  899999875

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=5e-14  Score=77.72  Aligned_cols=48  Identities=29%  Similarity=0.594  Sum_probs=34.3

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ  129 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~  129 (162)
                      .+++++|+     ..+|+|++||+|.|+++.+++||.|+.+|+.|+||++||+
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   55 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT   55 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEE
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEe
Confidence            45777777     7899999999999998877666555555445555555544

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3e-14  Score=83.71  Aligned_cols=47  Identities=30%  Similarity=0.748  Sum_probs=41.1

Q ss_pred             ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ...|+||++.+. .+++++|||.||..|+.+|+..+. ..||+||..+.
T Consensus        23 ~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~wl~~~~-~~CP~Cr~~i~   69 (79)
T d1fbva4          23 FQLCKICAENDK-DVKIEPCGHLMCTSCLTSWQESEG-QGCPFCRCEIK   69 (79)
T ss_dssp             TTBCTTTSSSBC-CEECSSSCCEECHHHHHHHHHTTC-CSCTTTCCCCC
T ss_pred             CCCCccCCCcCC-CeEEeCCCCeeeHHHHHHHHHHCc-CcCCCCCcCcc
Confidence            356999999999 889999999999999999997532 37999999886

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.9e-13  Score=78.54  Aligned_cols=59  Identities=24%  Similarity=0.434  Sum_probs=47.7

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE-CCeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~~~~~~~~  155 (162)
                      ..++++|+     ..+|+|.+||+|.|+.+.++                     +++||.|+. +|++|+||++||+++.
T Consensus         7 ~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~---------------------~~~Ww~~~~~~G~~G~vP~~yv~~~~   65 (71)
T d1u5sa1           7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPEN---------------------DPEWWKCKNARGQVGLVPKNYVVVLS   65 (71)
T ss_dssp             SEEEESSCCCCCSSSBCCCCSSCCEEEEECCCT---------------------TTCEEEEEETTTEEEEEETTSEEECC
T ss_pred             EEEEECccCCCCCCCEeeECCCCEEEEEEcccC---------------------CCCeEEEEECCCCEEEEChHHEEECC
Confidence            45778887     78999999999999987553                     346777774 6899999999999999


Q ss_pred             CCCCCC
Q psy9673         156 YLPIIN  161 (162)
Q Consensus       156 ~~~~~~  161 (162)
                      +.|..|
T Consensus        66 ~~p~l~   71 (71)
T d1u5sa1          66 DGPALH   71 (71)
T ss_dssp             CSCCC-
T ss_pred             CCCCCC
Confidence            988754

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.2e-15  Score=80.49  Aligned_cols=44  Identities=36%  Similarity=0.906  Sum_probs=38.4

Q ss_pred             CccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +.|.|+||++.+. +|++++|||+||..|+.++     ...||+||..++
T Consensus         5 ~~l~C~IC~~~~~-~p~~lpCgH~fC~~Ci~~~-----~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEAK-CPKLLPCLHTLCSGCLEAS-----GMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCB-CCSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSS
T ss_pred             CCCCCcccCcccC-CCEEecCCCHHhHHHHHcC-----CCcCcCCCCccc
Confidence            5689999999999 8899999999999999753     347999999886

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.1e-14  Score=76.14  Aligned_cols=50  Identities=30%  Similarity=0.684  Sum_probs=37.0

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..++++|+     ..+|+|.+||+|.|+++.++                       +||.|+.+|++|+||++||+++
T Consensus         2 tyv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           2 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDP-----------------------NWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSS-----------------------SEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCcCCcCCcCCCCCCEEEEEEecCC-----------------------CEEEEEECCeEEEEEHhHEEEC
Confidence            35677777     77999999999999988665                       4555666666777777777654

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=8.2e-14  Score=76.57  Aligned_cols=49  Identities=22%  Similarity=0.546  Sum_probs=38.7

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      .++++|+     +.+|+|.+||+|.+++..++                       +||.|+.+|+.|+||++|||++
T Consensus         3 yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~-----------------------~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           3 WARALYDFEALEEDELGFRSGEVVEVLDSSNP-----------------------SWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSS-----------------------SEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCCCCcCCcCCCCCCEEEEeEEcCC-----------------------CEEEEEECCcEEEEEHHHEEEc
Confidence            5677777     78999999999999887665                       5666666777788888888775

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.1e-14  Score=79.34  Aligned_cols=49  Identities=27%  Similarity=0.573  Sum_probs=39.1

Q ss_pred             CccccccccccccCC----CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           8 DLLECSVCLDRLDTS----SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~----p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ++..|+||++.+...    ..+++|||.||..||.+|+...+ ..||+||+.+.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~~CP~CR~~i~   54 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA-GNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS-SSCTTTCCCCS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCc-CCCCCCCcCcc
Confidence            478899999876312    35678999999999999997533 37999999876

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.39  E-value=2.1e-13  Score=75.17  Aligned_cols=49  Identities=35%  Similarity=0.685  Sum_probs=36.7

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      .++++|+     ..+|+|.+||+|.|+++.+++                       ||.|+++|++|+||++|||++
T Consensus         4 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~-----------------------W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           4 FVQALFDFNPQESGELAFKRGDVITLINKDDPN-----------------------WWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSS-----------------------EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCC-----------------------EEEEEECCeEEEEEhhhEEEC
Confidence            4677777     789999999999999987664                       555556666777777777653

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.4e-13  Score=77.85  Aligned_cols=59  Identities=19%  Similarity=0.254  Sum_probs=48.0

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~  157 (162)
                      ..+++|+     ..+|+|.+||+|.|+++.+..                   .+++||.|+.+|+.|+||++||+++.+.
T Consensus        15 ~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~-------------------~~~~W~~g~~~g~~G~vP~~yv~~~~~~   75 (79)
T d1uhca_          15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVT-------------------GNTEWWLAEVNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEESCCTT-------------------SCTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEeecCC-------------------CCCCEEEEEECCCEEEEehhhEEECCCC
Confidence            4566776     889999999999999876531                   2457888988999999999999999888


Q ss_pred             CCC
Q psy9673         158 PII  160 (162)
Q Consensus       158 ~~~  160 (162)
                      |..
T Consensus        76 pss   78 (79)
T d1uhca_          76 PSS   78 (79)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            753

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.8e-13  Score=76.50  Aligned_cols=47  Identities=30%  Similarity=0.667  Sum_probs=31.3

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeee
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSY  127 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~  127 (162)
                      ...++++|+     ..+|+|.+||+|.|+++.+++||.|+.+|+.|+||++|
T Consensus         5 g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~y   56 (62)
T d1k4us_           5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVF   56 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGG
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHH
Confidence            345677777     78999999999999988776554444443333333333

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.2e-14  Score=86.15  Aligned_cols=28  Identities=43%  Similarity=0.882  Sum_probs=21.3

Q ss_pred             cCCeEEEEECCeEEeecCCCeEeccCCC
Q psy9673         131 DNNWFYGEVNGTTGAFPMSYVQFVWYLP  158 (162)
Q Consensus       131 ~~~w~~g~~~g~~g~~p~~~~~~~~~~~  158 (162)
                      +++||.|+++|++|+||++|||.+.+..
T Consensus        66 ~~gWw~g~~~g~~G~~P~nyVe~~~~~~   93 (98)
T d1udla_          66 DPDWWQGEINGVTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             SSSEEBCBSSSCBCCEETTSEEECCCCS
T ss_pred             CCCeEEEEECCeEEEEchHHEEECCCCC
Confidence            5577777778888888888888876643

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.1e-13  Score=74.82  Aligned_cols=52  Identities=17%  Similarity=0.407  Sum_probs=39.4

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      .++++|+     ..+|+|++||+|.++.+.+.+                    +++||.|+.+|++|+||++||++.
T Consensus         6 ~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~--------------------~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           6 VIYALWDYEPQNDDELPMKEGDCMTIIHREDED--------------------EIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             EEEESSCBCCSSTTBCCBCSSCEEEECCCCTTS--------------------CSSEEEEEETTEEEEEEGGGEECC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCC--------------------CCCEEEEEECCeEEEEchHHhEeC
Confidence            3556776     789999999999998876531                    346777777888888888888753

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=8.9e-14  Score=75.09  Aligned_cols=47  Identities=26%  Similarity=0.660  Sum_probs=38.4

Q ss_pred             cccccccccccC---CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673          10 LECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus        10 l~C~iC~~~~~~---~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ++|+||++.|..   .+..++|||.||..|+.+|+..++ ..||+||+++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~-~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN-GLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSC-CBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcC-CCCCccCCcCC
Confidence            579999999852   245568999999999999987543 47999999875

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.9e-12  Score=75.32  Aligned_cols=59  Identities=17%  Similarity=0.328  Sum_probs=46.3

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+++.+++||.|+.+++..                  .|+.|+||++||+++.+
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~------------------~~~~G~~P~~yv~~~~~   69 (80)
T d1ue9a_           8 EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGK------------------KRQKGWFPASHVKLLGP   69 (80)
T ss_dssp             EEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCS------------------SCCEEEEETTSEEECCS
T ss_pred             CEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCC------------------CCCEeEEEheeEEECCC
Confidence            45777777     78999999999999999888887777655422                  26788999999988865


Q ss_pred             CC
Q psy9673         157 LP  158 (162)
Q Consensus       157 ~~  158 (162)
                      ..
T Consensus        70 ~~   71 (80)
T d1ue9a_          70 SS   71 (80)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.34  E-value=6e-13  Score=72.52  Aligned_cols=42  Identities=31%  Similarity=0.570  Sum_probs=30.9

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..+|+|++||.+.++++.+++                       ||.|+.+|+.|+||++||+++
T Consensus        14 ~~eLs~~~Gd~v~v~~~~~~~-----------------------Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1          14 PREVTMKKGDILTLLNSTNKD-----------------------WWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             TTBCCBCTTCEEEEEECCSSS-----------------------EEEEEETTEEEEEEGGGEEEC
T ss_pred             cCCccCCCCCEEEEeEEcCCC-----------------------EEEEEECCeEEEEeHHHEEEC
Confidence            789999999999999887665                       555555566666666666653

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=1e-12  Score=72.42  Aligned_cols=46  Identities=30%  Similarity=0.659  Sum_probs=32.5

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEec--CCCCceeeeeE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVN--GTTGAFPMSYV  128 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~--~~~G~~P~~~v  128 (162)
                      .++++|+     ..+|+|.+||+|.++++.+++||.|+..  |++|+||+|||
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yV   54 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV   54 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGE
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHE
Confidence            4667777     7899999999999999988777776642  23344444443

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.5e-13  Score=73.24  Aligned_cols=47  Identities=17%  Similarity=0.452  Sum_probs=35.4

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ  129 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~  129 (162)
                      ..+++|+     ..+|+|++||+|.++.+.+++||.|+.+|+.|+||++|++
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve   55 (58)
T d1ng2a1           4 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE   55 (58)
T ss_dssp             EEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCC
T ss_pred             EEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEE
Confidence            3455666     7899999999999999988777776666666666666654

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.1e-12  Score=78.08  Aligned_cols=54  Identities=28%  Similarity=0.487  Sum_probs=44.0

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ...+++|+     ..+|.|.+||+|.|+.+.+.+                     +.||.|+.+|++|+||++|||++..
T Consensus         6 ~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~---------------------~~w~~~~~~g~~G~~P~~Yve~~~~   64 (93)
T d1uffa_           6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGE---------------------PGWLYGSFQGNFGWFPCNYVEKMPS   64 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCS---------------------SSEEEEEETTEEEEEETTTEEECCS
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEeccCC---------------------CCEEEEEeCCcEEEEchHHEEECCC
Confidence            45677887     889999999999999876543                     3688888889999999999988754

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.9e-13  Score=81.72  Aligned_cols=50  Identities=34%  Similarity=0.675  Sum_probs=45.7

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ..+++++|+     ..+|+|.+||+|.|+++.+++||+|+.+|+.|+||+|||++
T Consensus        34 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~   88 (98)
T d1udla_          34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM   88 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEE
T ss_pred             ccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHHEEE
Confidence            356788887     77899999999999999999999999999999999999986

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.4e-13  Score=71.80  Aligned_cols=39  Identities=21%  Similarity=0.401  Sum_probs=28.6

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV  128 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v  128 (162)
                      ..+|+|.+||+|.|+++.+++||.|+.+|+.|+||++||
T Consensus        14 ~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yv   52 (53)
T d1wlpb1          14 GDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL   52 (53)
T ss_dssp             SSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTE
T ss_pred             CCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhC
Confidence            789999999999999987776666655555555555444

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.8e-12  Score=74.87  Aligned_cols=47  Identities=38%  Similarity=0.675  Sum_probs=31.1

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV  128 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v  128 (162)
                      ..+++++|+     +.+|+|.+||+|.|+++ +++||.++.+|+.|+||.+||
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yv   61 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYV   61 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGE
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhE
Confidence            456788887     78999999999999887 444544444433333333333

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.9e-13  Score=76.32  Aligned_cols=54  Identities=22%  Similarity=0.386  Sum_probs=40.6

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      ..+++++|+     ..+|+|.+||+|.|+++.++                      +.||.|+++|++|+||++|||++.
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~----------------------~~W~~g~~~g~~G~~P~~yve~i~   67 (72)
T d1ugva_          10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQE----------------------PGWLEGTLNGKTGLIPENYVEFLS   67 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSS----------------------TTEEEEESSSCEEEEEGGGEEECC
T ss_pred             CEEEEEcccCCCCCCCEecCCCCCEEEEeeccCC----------------------CCEEEEEeCCCEEEEchHHEEECC
Confidence            345777777     77899999999988776543                      246677777888888888888775


Q ss_pred             C
Q psy9673         156 Y  156 (162)
Q Consensus       156 ~  156 (162)
                      .
T Consensus        68 ~   68 (72)
T d1ugva_          68 G   68 (72)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=1.4e-12  Score=71.61  Aligned_cols=47  Identities=36%  Similarity=0.760  Sum_probs=35.2

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe-cCCCCceeeeeEE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYVQ  129 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~-~~~~G~~P~~~v~  129 (162)
                      .++++|+     ..+|+|.+||+|.++++.+++||.|+. +|+.|+||++||+
T Consensus         3 ~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve   55 (57)
T d1ckaa_           3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE   55 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEE
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeE
Confidence            4667777     778999999999999998877777763 4455555555554

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.1e-12  Score=73.49  Aligned_cols=54  Identities=24%  Similarity=0.432  Sum_probs=39.9

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ....++|+     ..+|+|++||+|.|+++ ++                       +||.|+.+|+.|+||++||+++..
T Consensus         9 ~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~~-----------------------~Ww~~~~~g~~G~vP~~yv~~~~~   64 (69)
T d1uhfa_           9 EEYIALYPYSSVEPGDLTFTEGEEILVTQK-DG-----------------------EWWTGSIGDRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             EEEECSSCBCCSSSSBCCBCTTCEEEECEE-ET-----------------------TEEEECSTTCCEEECGGGCEECCC
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEe-cC-----------------------CEEEEEECCcEEEEchhhEEECCC
Confidence            34556666     77999999999998866 33                       466666677788888888888766


Q ss_pred             CCC
Q psy9673         157 LPI  159 (162)
Q Consensus       157 ~~~  159 (162)
                      .|+
T Consensus        65 ~ps   67 (69)
T d1uhfa_          65 GPS   67 (69)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            554

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-12  Score=71.21  Aligned_cols=47  Identities=30%  Similarity=0.546  Sum_probs=28.1

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEec-CCCeEEEEecCCCCceeeeeEE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKI-DNNWFYGEVNGTTGAFPMSYVQ  129 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~-~~~w~~g~~~~~~G~~P~~~v~  129 (162)
                      .+.++|+     ..+|+|.+||.|.++++. +++||.|+.+|+.|+||+|||+
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyve   54 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE   54 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEE
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEE
Confidence            3566777     789999999999877654 3445555555555555555544

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=4.3e-12  Score=72.91  Aligned_cols=53  Identities=25%  Similarity=0.488  Sum_probs=38.5

Q ss_pred             eeEeeeec------cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEEC--CeEEeecCCCeEe
Q psy9673          82 SFIRFFLN------ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVN--GTTGAFPMSYVQF  153 (162)
Q Consensus        82 ~~~~~~~~------~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~--g~~g~~p~~~~~~  153 (162)
                      .+++++|+      +.+|+|.+||+|.|+.+.++                      ++||.|+.+  |++|+||++|||+
T Consensus         8 ~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~----------------------~gW~~g~~~~~g~~G~fP~nyVe~   65 (72)
T d1spka_           8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEK----------------------DGWLYGEHDTTKARGWFPSSYTKL   65 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCB----------------------TTEEEEEETTTCCEEEEEGGGCEE
T ss_pred             CEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecC----------------------CCeEEEEECCCCCEEEEchhhEEE
Confidence            35667776      45799999999998865442                      245666653  7888888888888


Q ss_pred             ccC
Q psy9673         154 VWY  156 (162)
Q Consensus       154 ~~~  156 (162)
                      +.+
T Consensus        66 i~~   68 (72)
T d1spka_          66 LSG   68 (72)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            864

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7.3e-12  Score=75.32  Aligned_cols=55  Identities=20%  Similarity=0.080  Sum_probs=42.7

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~  157 (162)
                      .+++|+     ..+|+|.+||+|.|+++.|..                   -+.+||.++.+|++|+||++||++..+.
T Consensus        20 ~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~-------------------~~~~Ww~~~~~g~~G~~P~~yv~~~~~~   79 (92)
T d1ug1a_          20 FQAERNFNAAQDLDVSLLEGDLVGVIKKKDPM-------------------GSQNRWLIDNGVTKGFVYSSFLKPYNPR   79 (92)
T ss_dssp             EEESSCCCCCSSSCCCCCTTCEEEEEESCCTT-------------------SCSSEEEEECSSSEEEEEGGGEEECCCC
T ss_pred             EEEcCCcCCCCCCeEEEecccEEEEEEccccc-------------------ccCCceEEEecccEEEEEhhhceecCCc
Confidence            456666     889999999999999986632                   1357888888888888888888887543

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.1e-11  Score=70.94  Aligned_cols=56  Identities=25%  Similarity=0.328  Sum_probs=41.9

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEEC-CeEEeecCCCeEecc
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVN-GTTGAFPMSYVQFVW  155 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~-g~~g~~p~~~~~~~~  155 (162)
                      ..+.++|+     ..+|+|.+||+|.|+.+.++                      ++||.|+.+ |+.|+||++||++++
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~----------------------~~W~~~~~~~g~~G~~P~~yve~~~   64 (71)
T d1k9aa1           7 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKD----------------------PNWYKAKNKVGREGIIPANYVQKRE   64 (71)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSS----------------------TTEEEEECTTCCEEEEEGGGEEECC
T ss_pred             CEEEEccCCCCCCCCCccCCCCCEEEEeEeccC----------------------CCEEEEEeCCCCEEEEchHHeEEcc
Confidence            45777887     88999999999998887543                      245666654 788888888888876


Q ss_pred             CCCC
Q psy9673         156 YLPI  159 (162)
Q Consensus       156 ~~~~  159 (162)
                      ....
T Consensus        65 ~~~~   68 (71)
T d1k9aa1          65 GVKA   68 (71)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            6543

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=7.2e-12  Score=68.62  Aligned_cols=43  Identities=19%  Similarity=0.276  Sum_probs=31.2

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..+|+|++||+|.++.+.+++                      .||.|+.+|+.|+||++||+++
T Consensus        14 ~~eLs~~~Gd~i~vl~~~~~~----------------------~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1          14 DNTLSITKGEKLRVLGYNHNG----------------------EWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             TTBCCBCTTCEEEEEEECTTS----------------------SEEEEECSSCEEEEEGGGEEES
T ss_pred             cCCcCCCCCCEEEEeEecCCC----------------------CEEEEEECCCEeEEchhheEEC
Confidence            789999999999998876643                      3555556666666666666654

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=4.8e-12  Score=71.90  Aligned_cols=42  Identities=29%  Similarity=0.414  Sum_probs=29.4

Q ss_pred             cceeeccCCCEEEEeEec-CCCeEEEEecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEec
Q psy9673          90 ILDLNFKKDDIVILRRKI-DNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFV  154 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~-~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~  154 (162)
                      ..+|+|++||+|.|+++. +++                       ||.|+.  +|++|+||++|||+.
T Consensus        24 ~~eLsf~~GD~i~Vl~~~~~~g-----------------------Ww~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_          24 GPFLRLNPGDIVELTKAEAEHN-----------------------WWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             SCBCCBCTTCEEEEEECCTTCS-----------------------EEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CCEeeEcCCCEEEEEEEecCCC-----------------------EEEEEECCCCCEEEEeHHHEEEc
Confidence            568999999999998753 344                       455554  466777777777663

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=9.3e-12  Score=76.70  Aligned_cols=62  Identities=21%  Similarity=0.205  Sum_probs=46.6

Q ss_pred             eeeEeeeec-----cceeeccCCCEEEEeEec---CCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeE
Q psy9673          81 VSFIRFFLN-----ILDLNFKKDDIVILRRKI---DNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQ  152 (162)
Q Consensus        81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~---~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~  152 (162)
                      ...++++|+     ..+|+|++||+|.|+.+.   +.+||.|.+.|+.+...               +|++|+||++||+
T Consensus        21 ~~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~---------------~g~~G~fP~nyV~   85 (106)
T d1i1ja_          21 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDL---------------AARLGYFPSSIVR   85 (106)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCB---------------CSCCEEEEGGGEE
T ss_pred             eeEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCcccccc---------------CCcccccccccEE
Confidence            346888888     889999999999999874   35687777766543322               3678999999988


Q ss_pred             eccCC
Q psy9673         153 FVWYL  157 (162)
Q Consensus       153 ~~~~~  157 (162)
                      .+..+
T Consensus        86 ~~~~~   90 (106)
T d1i1ja_          86 EDQTL   90 (106)
T ss_dssp             EEEEC
T ss_pred             Ecccc
Confidence            77544

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.2e-12  Score=76.13  Aligned_cols=52  Identities=31%  Similarity=0.531  Sum_probs=41.7

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     ..+|+|.+||+|.|+++.++                       +||.|+++|++|+||++||+++..
T Consensus        11 ~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~-----------------------~W~~g~~~g~~G~~P~~yv~~i~~   67 (76)
T d1ujya_          11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEG-----------------------GWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             EEEECCSCBCCSSTTSCCBCSSCCEEESSCCSS-----------------------SCEEEEETTEEEEECTTTSEECCH
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEeEEcCC-----------------------CEEEEEECCcEEEEchHHEEECCC
Confidence            35677777     78999999999999877554                       577777788889999999888754

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.21  E-value=3.6e-12  Score=68.80  Aligned_cols=40  Identities=25%  Similarity=0.411  Sum_probs=31.8

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeEE
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ  129 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v~  129 (162)
                      ..+|+|.+||++.++++.+.+||.++ .+|+.|+||+|||+
T Consensus        12 ~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~   52 (53)
T d2rn8a1          12 PQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV   52 (53)
T ss_dssp             TTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEE
T ss_pred             CCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEe
Confidence            77999999999999998888888776 45566666666664

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.9e-11  Score=70.58  Aligned_cols=58  Identities=10%  Similarity=0.011  Sum_probs=44.9

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..++++|+     +.+|.|.+||+|.|+++.+++||.++.......                 +|++|+||++|||++..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~-----------------~g~~G~vP~~yve~~~~   70 (74)
T d1wfwa_           8 STMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHS-----------------PAAEGWVPGSILAPFSG   70 (74)
T ss_dssp             CEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSS-----------------SSEEEEEEGGGCCBCCS
T ss_pred             CEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCc-----------------CCeeeEEchHHeEECCC
Confidence            45667777     789999999999999998888888775432211                 47899999999988764

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=8.2e-12  Score=69.18  Aligned_cols=50  Identities=34%  Similarity=0.718  Sum_probs=35.7

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      .+++|+     ..+|+|.+||+|.++.+.+++||.|+...                     +|++|+||++|||++
T Consensus         6 ~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~---------------------~g~~G~vP~nyve~i   60 (60)
T d1arka_           6 FRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQR---------------------TGRTGMLPANYVEAI   60 (60)
T ss_dssp             EECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTT---------------------TCCEEEEETTTCEEC
T ss_pred             EEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECC---------------------CCCEEEEcHHHEEEC
Confidence            455666     77999999999999888776665555321                     366777777777764

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=7.4e-12  Score=78.92  Aligned_cols=46  Identities=17%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV  128 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v  128 (162)
                      ...++|+     .++|.|.+||+|.|+++.+++||.|+.+|+.|+||++||
T Consensus        16 ~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv   66 (118)
T d1ng2a2          16 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL   66 (118)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGE
T ss_pred             EEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhE
Confidence            4456776     889999999999999887765555444444444444443

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=2.7e-11  Score=68.53  Aligned_cols=52  Identities=21%  Similarity=0.307  Sum_probs=37.6

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~  157 (162)
                      ..++|+     ..+|+|++||+|.++.+.+++||.++.                      .+|+.|+||++||+.+.+.
T Consensus         5 v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~----------------------~~g~~G~~P~~yV~~~~~~   61 (67)
T d1gl5a_           5 VVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD----------------------KYGSEGYIPSNYVTGKKSN   61 (67)
T ss_dssp             EEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEEC----------------------SSSCEEEEETTSEESSTTT
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEE----------------------CCCCEEEEEhHHeEEecCC
Confidence            456666     779999999999999887765555431                      2467777777777776554

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.6e-13  Score=77.74  Aligned_cols=68  Identities=18%  Similarity=0.283  Sum_probs=48.2

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEec
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFV  154 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~  154 (162)
                      .+.+++|+     ..+|+|.+||+|.|+.+....|..+..     ..+   ...+++||.|+.  +|++|+||++|||.+
T Consensus         4 ~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~-----~~~---~~~~~GW~~G~~~~~g~~G~FP~nYVe~i   75 (83)
T d1phta_           4 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDG-----QEA---RPEEIGWLNGYNETTGERGDFPGTYVEYI   75 (83)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTT-----GGG---CHHHHCEEEEEETTTTEEEEEEGGGEEEE
T ss_pred             CEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccc-----ccc---ccCCCCeEEEEECCCCcEeeEehhhEEEc
Confidence            45677887     789999999999999875543322111     000   012568999987  799999999999988


Q ss_pred             cCC
Q psy9673         155 WYL  157 (162)
Q Consensus       155 ~~~  157 (162)
                      ...
T Consensus        76 ~~~   78 (83)
T d1phta_          76 GRK   78 (83)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            643

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=5.9e-12  Score=74.36  Aligned_cols=60  Identities=20%  Similarity=0.388  Sum_probs=39.1

Q ss_pred             eeEeeeec-----cceeeccCCCEEEEeEecC-----CCeEEEEecCCCCceeeeeEEecCCeEEE-EECCeEEeecCCC
Q psy9673          82 SFIRFFLN-----ILDLNFKKDDIVILRRKID-----NNWFYGEVNGTTGAFPMSYVQIDNNWFYG-EVNGTTGAFPMSY  150 (162)
Q Consensus        82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~-----~~w~~g~~~~~~G~~P~~~v~~~~~w~~g-~~~g~~g~~p~~~  150 (162)
                      .+++++|+     ..+|+|++||+|.|+.+.+     ++||.|...+.              |+.. ..+|++|+||+||
T Consensus        13 ~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~--------------~~~~~~~~g~~G~fP~ny   78 (83)
T d1bb9a_          13 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESD--------------WNQHKELEKCRGVFPENF   78 (83)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHH--------------HHTTCCHHHHCEEEEGGG
T ss_pred             EEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCC--------------ccccccCCCCEEEEchhH
Confidence            45778887     7899999999999988754     34555543210              0000 0136788888888


Q ss_pred             eEecc
Q psy9673         151 VQFVW  155 (162)
Q Consensus       151 ~~~~~  155 (162)
                      ||.++
T Consensus        79 Ve~ie   83 (83)
T d1bb9a_          79 TERVQ   83 (83)
T ss_dssp             EEEEC
T ss_pred             eEEcC
Confidence            88764

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=8.8e-12  Score=68.13  Aligned_cols=27  Identities=7%  Similarity=0.076  Sum_probs=22.1

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecCCC
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKIDNN  110 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~  110 (162)
                      ++++|+     ..+|+|.+||+|.++.+.+.+
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~   33 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGS   33 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSS
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCC
Confidence            567777     789999999999998886654

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1.2e-11  Score=69.91  Aligned_cols=56  Identities=25%  Similarity=0.573  Sum_probs=39.7

Q ss_pred             eeeEeeeec-----c-ceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE-CCeEEeecCCCeEe
Q psy9673          81 VSFIRFFLN-----I-LDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPMSYVQF  153 (162)
Q Consensus        81 ~~~~~~~~~-----~-~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~~~~~~  153 (162)
                      ...++++|+     . .+|+|.+||+|.|+++.+..                  ..+++||.|+. +|++|+||+||||.
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~------------------~~~~~Ww~g~~~~G~~G~~P~nyve~   66 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPL------------------GRDSDWWKVRTKNGNIGYIPYNYIEI   66 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTT------------------SCEEEEEEEECTTSCEEEEEGGGEEE
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCC------------------CcCCCeEEEEeCCCCEEEEEHHHEEE
Confidence            345778887     3 38999999999999886520                  01346777765 57888888888876


Q ss_pred             c
Q psy9673         154 V  154 (162)
Q Consensus       154 ~  154 (162)
                      +
T Consensus        67 i   67 (67)
T d2v1ra1          67 I   67 (67)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.7e-11  Score=65.39  Aligned_cols=44  Identities=27%  Similarity=0.468  Sum_probs=32.1

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      ..+|+|++||+|.+.++.+++||.++..                     .+|+.|+||++||+++
T Consensus        14 ~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~---------------------~~g~~G~vP~~yv~pv   57 (57)
T d1efna_          14 EDDLSFHKGEKFQILNSSEGDWWEARSL---------------------TTGETGYIPSNYVAPV   57 (57)
T ss_dssp             TTBCCBCTTCEEEEEECSSCSEEEEEET---------------------TTTEEEEEEGGGEEEC
T ss_pred             cCCcCCCCCCEEEEEEecCCCCEEEEEC---------------------CCCCEEEEeHHHeEEC
Confidence            7799999999999998877666555421                     1466777777777654

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.3e-11  Score=72.84  Aligned_cols=56  Identities=20%  Similarity=0.372  Sum_probs=39.8

Q ss_pred             eeeEeeeec-----------cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE-CCeEEeecC
Q psy9673          81 VSFIRFFLN-----------ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPM  148 (162)
Q Consensus        81 ~~~~~~~~~-----------~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~  148 (162)
                      ...+.++|+           ..+|+|++||+|.|+.+.+.+                      .||.++. +|+.|+||+
T Consensus        17 ~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~----------------------gW~~~~~~~G~~G~~P~   74 (96)
T d1wiea_          17 VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDED----------------------GFYEGELLDGQRGLVPS   74 (96)
T ss_dssp             EEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSS----------------------SCCEEEETTCCBCBCCT
T ss_pred             ceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCC----------------------ceEEEEeCCCCEEEEeh
Confidence            456777777           157999999999998776643                      3555553 577777777


Q ss_pred             CCeEeccCCC
Q psy9673         149 SYVQFVWYLP  158 (162)
Q Consensus       149 ~~~~~~~~~~  158 (162)
                      +|||++...+
T Consensus        75 nyve~~~~~~   84 (96)
T d1wiea_          75 NFVDFVQDNE   84 (96)
T ss_dssp             TSEECCCSCC
T ss_pred             HHeEECCCcc
Confidence            8887775543

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=2.1e-11  Score=76.38  Aligned_cols=50  Identities=24%  Similarity=0.741  Sum_probs=39.4

Q ss_pred             CccccccccccccCC-----------------CEEcccCCccchhcHHHHHhcCC---Cccccccccccc
Q psy9673           8 DLLECSVCLDRLDTS-----------------SKVLPCQHTFCKKCLEEIVSSHK---ELRCPECRVLVE   57 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~-----------------p~~~~C~H~fC~~Cl~~~~~~~~---~~~Cp~Cr~~~~   57 (162)
                      .+..|+||++.|...                 ..+++|+|.||..||..|+..+.   ...||+||+.+.
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            355799999988521                 25678999999999999997532   358999999774

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=7e-12  Score=71.02  Aligned_cols=49  Identities=22%  Similarity=0.430  Sum_probs=33.6

Q ss_pred             eeeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeE
Q psy9673          80 VVSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYV  128 (162)
Q Consensus        80 ~~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v  128 (162)
                      ...++.++|+     ..+|+|.+||+|.|+.+.+++||.+. .+|+.|+||++||
T Consensus         7 ~~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv   61 (67)
T d1awwa_           7 ELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV   61 (67)
T ss_dssp             CCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTB
T ss_pred             CCEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHe
Confidence            3456677777     78999999999999988777666664 2334444444444

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2e-11  Score=72.93  Aligned_cols=47  Identities=19%  Similarity=0.466  Sum_probs=38.2

Q ss_pred             ccccccccccccC-----------------CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           9 LLECSVCLDRLDT-----------------SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~~-----------------~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      +-.|+||++.+..                 .++.++|||.||..||.+|+..++  +||+||+.+.
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~~~   84 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ--VCPLDNREWE   84 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS--BCSSSCSBCC
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCC--cCCCCCCccc
Confidence            4459999887742                 135678999999999999999766  8999999875

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=7.9e-11  Score=66.19  Aligned_cols=52  Identities=23%  Similarity=0.403  Sum_probs=35.3

Q ss_pred             Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673          84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus        84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~  157 (162)
                      ..++|+     ..+|+|.+||+|.++++ +++||.+...                     .+|+.|+||++||+++..+
T Consensus         7 vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~---------------------~~g~~G~vP~~yv~~~~~~   63 (65)
T d1qcfa1           7 VVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSL---------------------ATRKEGYIPSNYVARVDSL   63 (65)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEET---------------------TTCCEEEEEGGGEEETTCG
T ss_pred             EEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEc---------------------cCCCEEEEchHHeEECccC
Confidence            445666     78999999999999876 3344443311                     1477788888888777554

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=7.9e-11  Score=65.97  Aligned_cols=46  Identities=26%  Similarity=0.452  Sum_probs=33.3

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ..+|+|.+||+|.+.++.+++||.++...                     +|+.|+||++||+++..
T Consensus        16 ~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~---------------------~g~~G~vP~~yv~~~~s   61 (64)
T d1fmka1          16 ETDLSFKKGERLQIVNNTEGDWWLAHSLS---------------------TGQTGYIPSNYVAPSDS   61 (64)
T ss_dssp             SSBCCBCTTCEEEESCCCSSSEEEEEETT---------------------TCCEEEEEGGGEEETTS
T ss_pred             cCCcCCCCCCEEEEEEEcCCCcEEEEECC---------------------CCCEEEEehHHeEECcc
Confidence            78999999999999988776666555321                     36677777777776643

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=9.5e-12  Score=71.25  Aligned_cols=35  Identities=20%  Similarity=0.441  Sum_probs=27.7

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEec
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVN  117 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~  117 (162)
                      .++++|+     ..+|+|.+|++|.|+++.+++||.|+.+
T Consensus         8 ~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~   47 (71)
T d2hspa_           8 AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYG   47 (71)
T ss_dssp             CEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCS
T ss_pred             EEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEEC
Confidence            4667776     7799999999999998877776666543

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=4.1e-11  Score=66.02  Aligned_cols=50  Identities=16%  Similarity=0.351  Sum_probs=34.9

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      .++++|+     ..+|+|.+||+|.|+++.+ +||.+..                      .+|+.|+||++||+++.
T Consensus         3 ~a~alydf~a~~~~ELs~~~Gd~i~v~~~~~-~ww~~~~----------------------~~g~~G~~P~nyve~i~   57 (59)
T d1i07a_           3 YAKSKYDFVARNSSELSVMKDDVLEILDDRR-QWWKVRN----------------------ASGDSGFVPNNILDIMR   57 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGGGC-CEEEEEC----------------------TTSCEEEEEGGGEEEEC
T ss_pred             EEEEccCCCCCCCCeeeEcCCCEEEEEEEcC-CcEEEEE----------------------cCCCEEEECHHHeEECC
Confidence            4677777     7899999999999987643 4554431                      24666777777776654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.03  E-value=3.9e-11  Score=66.41  Aligned_cols=50  Identities=20%  Similarity=0.571  Sum_probs=40.6

Q ss_pred             CCccccccccccccCCCEEccc-----CCccchhcHHHHHhcCCCccccccccccc
Q psy9673           7 NDLLECSVCLDRLDTSSKVLPC-----QHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         7 ~~~l~C~iC~~~~~~~p~~~~C-----~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ++...|.||++.+. .+.+.+|     +|.||..||.+|+..++...||+||+.+.
T Consensus         4 ed~~~C~IC~~~~~-~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCC-CceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            56778999999887 5555554     59999999999997655568999999875

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=6.2e-11  Score=71.87  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=29.6

Q ss_pred             eeeccCCCEEEEeEecCCCeEEEEe------cCCCCceeeeeEE
Q psy9673          92 DLNFKKDDIVILRRKIDNNWFYGEV------NGTTGAFPMSYVQ  129 (162)
Q Consensus        92 el~~~~gd~i~v~~~~~~~w~~g~~------~~~~G~~P~~~v~  129 (162)
                      +|+|++||+|.|+++.+.+||.|+.      +|+.|+||+|||+
T Consensus        22 eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~   65 (96)
T d1kjwa1          22 ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV   65 (96)
T ss_dssp             BCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHH
T ss_pred             cceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEecccee
Confidence            7999999999999999988988874      3445555555553

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.01  E-value=2.2e-10  Score=68.75  Aligned_cols=48  Identities=23%  Similarity=0.487  Sum_probs=36.9

Q ss_pred             eeeeEeeeec-----cce-------eeccCCCEEEEeEecCCCeEEEEe---cCCCCceeeee
Q psy9673          80 VVSFIRFFLN-----ILD-------LNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPMSY  127 (162)
Q Consensus        80 ~~~~~~~~~~-----~~e-------l~~~~gd~i~v~~~~~~~w~~g~~---~~~~G~~P~~~  127 (162)
                      ....++++|+     .++       |+|..||+|.|+++.+++||.|++   +|+.|+||++|
T Consensus        20 ~~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~   82 (96)
T d1t0ha_          20 VAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   82 (96)
T ss_dssp             CCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             ccEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcH
Confidence            3456778887     333       899999999999999988888886   45567777654

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=7.2e-10  Score=60.40  Aligned_cols=18  Identities=33%  Similarity=0.665  Sum_probs=14.7

Q ss_pred             EEEecCCCCceeeeeEEe
Q psy9673         113 YGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       113 ~g~~~~~~G~~P~~~v~~  130 (162)
                      .|+.+|+.|+||++||++
T Consensus        38 ~g~~~g~~G~~P~~yve~   55 (57)
T d1utia_          38 TGRLHNKLGLFPANYVAP   55 (57)
T ss_dssp             EEEETTEEEEEEGGGEEE
T ss_pred             EEEECCcEEEEEHHHEEE
Confidence            455678899999999985

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=7.8e-10  Score=60.06  Aligned_cols=17  Identities=47%  Similarity=0.886  Sum_probs=14.4

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||++||++
T Consensus        39 g~~~g~~G~~P~~yv~~   55 (56)
T d1gcqa_          39 GACHGQTGMFPRNYVTP   55 (56)
T ss_dssp             EEETTEEEEEEGGGEEE
T ss_pred             EEECCeEEEEEHhHEEE
Confidence            56678899999999974

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=5.7e-10  Score=61.96  Aligned_cols=46  Identities=20%  Similarity=0.467  Sum_probs=30.6

Q ss_pred             eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE--ecCCCCceeeeeEE
Q psy9673          83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQ  129 (162)
Q Consensus        83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~--~~~~~G~~P~~~v~  129 (162)
                      .+.++|+     ..+|+|.+||+|.|+++.+ +||.+.  .+|+.|+||++||+
T Consensus         8 ~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~   60 (62)
T d2iima1           8 LVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVA   60 (62)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEE
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEE
Confidence            3556666     7899999999999998755 455443  23445555555553

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.89  E-value=1.1e-09  Score=59.16  Aligned_cols=15  Identities=40%  Similarity=0.669  Sum_probs=12.4

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||+|||+.
T Consensus        40 ~~g~~G~~P~~yv~~   54 (55)
T d1u06a1          40 VNDRQGFVPAAYVKK   54 (55)
T ss_dssp             ETTEEEEEEGGGEEE
T ss_pred             ECCeEEEEeHHHEEE
Confidence            356889999999974

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=98.84  E-value=1.8e-09  Score=58.97  Aligned_cols=15  Identities=40%  Similarity=0.705  Sum_probs=12.7

Q ss_pred             ecCCCCceeeeeEEe
Q psy9673         116 VNGTTGAFPMSYVQI  130 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~  130 (162)
                      .+|+.|+||++||++
T Consensus        42 ~~g~~G~~P~~yvep   56 (58)
T d1sema_          42 LNNRRGIFPSNYVCP   56 (58)
T ss_dssp             ETTEEEEEEGGGEEE
T ss_pred             ECCeEEEEEhhhEEE
Confidence            467899999999985

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.6e-09  Score=60.07  Aligned_cols=40  Identities=23%  Similarity=0.507  Sum_probs=31.2

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW  155 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~  155 (162)
                      +.-+.|-+-...-..+++||.|+.+|++|+||++|||+..
T Consensus        22 Lsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~~   61 (62)
T d1k4us_          22 LEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             cCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEECC
Confidence            4445566555444458999999999999999999998763

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=3.3e-09  Score=57.89  Aligned_cols=38  Identities=29%  Similarity=0.503  Sum_probs=30.2

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEe
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQF  153 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~  153 (162)
                      +.-+.|-+-...-..+++||.|+++|++|+||++||+.
T Consensus        19 Lsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_          19 LTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             CCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             cCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEee
Confidence            44455665554555688999999999999999999985

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.9e-09  Score=56.51  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=28.7

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeE
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQ  152 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~  152 (162)
                      +.-+.|-+-...-+.+++||.|+.+|+.|+||++|||
T Consensus        17 Ls~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1          17 VSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             CCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             ecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            3344565544444568899999999999999999997

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=3.7e-09  Score=68.51  Aligned_cols=47  Identities=17%  Similarity=0.405  Sum_probs=38.7

Q ss_pred             eeEeeeec-----cc-------eeeccCCCEEEEeEecCCCeEEEEe---cCCCCceeeeeE
Q psy9673          82 SFIRFFLN-----IL-------DLNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPMSYV  128 (162)
Q Consensus        82 ~~~~~~~~-----~~-------el~~~~gd~i~v~~~~~~~w~~g~~---~~~~G~~P~~~v  128 (162)
                      -.++++|+     ..       .|+|.+||+|.|+++.+++||.|+.   +|+.|+||++|+
T Consensus        24 f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~   85 (145)
T d1vyva1          24 FAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLR   85 (145)
T ss_dssp             EEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchh
Confidence            35777877     22       3999999999999999999999986   677899998764

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.9e-09  Score=58.94  Aligned_cols=39  Identities=15%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV  154 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~  154 (162)
                      +.-+.|-+-.-.-+.+++||.|+.+|+.|+||++|||++
T Consensus        19 Ls~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1          19 MALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL   57 (58)
T ss_dssp             CCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCS
T ss_pred             cCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEEC
Confidence            344556655555556899999999999999999999986

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=8.3e-09  Score=59.45  Aligned_cols=17  Identities=53%  Similarity=0.942  Sum_probs=14.0

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      |+.+|+.|+||.+||++
T Consensus        48 g~~~g~~G~~P~~yv~~   64 (76)
T d1ujya_          48 GTLNGRTGWFPSNYVRE   64 (76)
T ss_dssp             EEETTEEEEECTTTSEE
T ss_pred             EEECCcEEEEchHHEEE
Confidence            44567899999999985

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=7.5e-09  Score=58.38  Aligned_cols=14  Identities=29%  Similarity=0.444  Sum_probs=12.1

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||+|||++
T Consensus        54 ~g~~G~fP~nyVeP   67 (69)
T d1gcqc_          54 TNEVGWFPCNRVHP   67 (69)
T ss_dssp             TTEEEEEEGGGEEE
T ss_pred             CCCEEEEeHHHEEE
Confidence            46789999999986

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.5e-08  Score=63.29  Aligned_cols=42  Identities=24%  Similarity=0.287  Sum_probs=33.4

Q ss_pred             EecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccC
Q psy9673         115 EVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       115 ~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~  156 (162)
                      ++.-+.|-+-.-.-..+++||.|+.+|+.|+||++||+.+..
T Consensus        30 ELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   71 (118)
T d1ng2a2          30 EVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ   71 (118)
T ss_dssp             BCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             EecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEECCC
Confidence            355556766655555689999999999999999999998743

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.6e-08  Score=57.87  Aligned_cols=41  Identities=32%  Similarity=0.566  Sum_probs=31.5

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWYL  157 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~~~  157 (162)
                      +.-+.|-+-..+ +.+++||.|+++|++|+||++||+++...
T Consensus        27 Ls~~~Gd~i~vl-~~~~~ww~g~~~g~~G~fP~~yve~i~~~   67 (74)
T d1j3ta_          27 LNFSKHDIITVL-EQQENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCBCTTCEEEEE-EECSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             ecCCCCCEEEEE-EccCCeEEEEECCcEEEEchhhEEECCCC
Confidence            444456544433 44789999999999999999999998654

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=6.5e-09  Score=58.40  Aligned_cols=23  Identities=35%  Similarity=0.887  Sum_probs=20.0

Q ss_pred             CCCeEEEEe-cCCCCceeeeeEEe
Q psy9673         108 DNNWFYGEV-NGTTGAFPMSYVQI  130 (162)
Q Consensus       108 ~~~w~~g~~-~~~~G~~P~~~v~~  130 (162)
                      +++||.|+. +|+.|+||+|||++
T Consensus        43 ~~~Ww~g~~~~G~~G~~P~nyve~   66 (67)
T d2v1ra1          43 DSDWWKVRTKNGNIGYIPYNYIEI   66 (67)
T ss_dssp             EEEEEEEECTTSCEEEEEGGGEEE
T ss_pred             CCCeEEEEeCCCCEEEEEHHHEEE
Confidence            558999985 78999999999985

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1e-08  Score=55.50  Aligned_cols=23  Identities=39%  Similarity=1.005  Sum_probs=20.7

Q ss_pred             cCCeEEEEECCeEEeecCCCeEe
Q psy9673         131 DNNWFYGEVNGTTGAFPMSYVQF  153 (162)
Q Consensus       131 ~~~w~~g~~~g~~g~~p~~~~~~  153 (162)
                      +++||.|+.+|++|+||+||||.
T Consensus        33 ~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1          33 DQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             -CCEEEEESSSCEEEEEGGGEEC
T ss_pred             CCCeEEEEECCcEEEEehhhEEE
Confidence            67899999999999999999985

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=4.6e-08  Score=53.22  Aligned_cols=39  Identities=26%  Similarity=0.611  Sum_probs=29.8

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEec
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFV  154 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~  154 (162)
                      +.-+.|-+-...-..+++||.|+.  +|++|+||++|||++
T Consensus        17 Ls~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_          17 LTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            444456555544455889999998  589999999999986

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=4.3e-08  Score=53.14  Aligned_cols=38  Identities=21%  Similarity=0.413  Sum_probs=28.9

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE-CCeEEeecCCCeEe
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPMSYVQF  153 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~~~~~~  153 (162)
                      +.-+.|-+-.-.-+.+++||.|+. +|++|+||++|||+
T Consensus        18 Ls~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_          18 LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             CCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             cCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            444456655544455889999997 58999999999985

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.1e-08  Score=59.34  Aligned_cols=47  Identities=26%  Similarity=0.694  Sum_probs=35.1

Q ss_pred             CccccccccccccC-C-CEEcccCCccchhcHHHHHhcC------CCcccccccc
Q psy9673           8 DLLECSVCLDRLDT-S-SKVLPCQHTFCKKCLEEIVSSH------KELRCPECRV   54 (162)
Q Consensus         8 ~~l~C~iC~~~~~~-~-p~~~~C~H~fC~~Cl~~~~~~~------~~~~Cp~Cr~   54 (162)
                      ....|+||++.+.. + +..++|+|.||..|+..++..+      ..+.||.|+-
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            35679999998852 2 4566899999999999988631      2357998654

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=1.7e-07  Score=59.66  Aligned_cols=36  Identities=25%  Similarity=0.635  Sum_probs=31.4

Q ss_pred             eeccCCCEEEEeEecCCCeEEEEe---cCCCCceeeeeE
Q psy9673          93 LNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPMSYV  128 (162)
Q Consensus        93 l~~~~gd~i~v~~~~~~~w~~g~~---~~~~G~~P~~~v  128 (162)
                      |+|..||+|.|+++.|.+||.|+.   ++..|+||++|+
T Consensus        47 LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          47 VNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             CEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             cCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            889999999999999999999985   456789998764

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=98.40  E-value=7.7e-08  Score=51.29  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=27.9

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE-CCeEEeecCCCeEe
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPMSYVQF  153 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~~~~~~  153 (162)
                      +.-+.|-+-.-+-+.+++||.|+. +|+.|+||++||+.
T Consensus        15 Ls~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1          15 LALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             CCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             eeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            344455544444445889999994 78999999999973

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=8.3e-08  Score=52.34  Aligned_cols=12  Identities=25%  Similarity=0.506  Sum_probs=10.2

Q ss_pred             CCCceeeeeEEe
Q psy9673         119 TTGAFPMSYVQI  130 (162)
Q Consensus       119 ~~G~~P~~~v~~  130 (162)
                      +.|+||+|||++
T Consensus        44 ~~G~~P~nyve~   55 (59)
T d1i07a_          44 DSGFVPNNILDI   55 (59)
T ss_dssp             CEEEEEGGGEEE
T ss_pred             CEEEECHHHeEE
Confidence            369999999985

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=5.7e-08  Score=55.06  Aligned_cols=45  Identities=20%  Similarity=0.287  Sum_probs=31.6

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEECCe-EEeecCCCeEeccCCCCC
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEVNGT-TGAFPMSYVQFVWYLPII  160 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~-~g~~p~~~~~~~~~~~~~  160 (162)
                      +.-+.|-+-...-+.+++||.|+++|+ .|+||++||+.+.+....
T Consensus        23 Lsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~~~~   68 (71)
T d2hspa_          23 LTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPEGI   68 (71)
T ss_dssp             CCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCCCCC
T ss_pred             ccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCcccc
Confidence            444456554444446889999998654 559999999998765543

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=5.2e-08  Score=54.59  Aligned_cols=41  Identities=20%  Similarity=0.250  Sum_probs=30.4

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE-CCeEEeecCCCeEeccC
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV-NGTTGAFPMSYVQFVWY  156 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~-~g~~g~~p~~~~~~~~~  156 (162)
                      +.-+.|-+-.-.-..+++||.|+. +|+.|+||++||+++.+
T Consensus        25 Ls~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_          25 LQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             cCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECcC
Confidence            444555544434344789999985 79999999999998865

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=2.7e-07  Score=55.32  Aligned_cols=38  Identities=13%  Similarity=0.112  Sum_probs=30.0

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE------CCeEEeecCCCeEe
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV------NGTTGAFPMSYVQF  153 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~------~g~~g~~p~~~~~~  153 (162)
                      +.-+.|-+-...-+.+++||.|++      +|++|+||+|||+.
T Consensus        23 Lsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e   66 (96)
T d1kjwa1          23 LSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (96)
T ss_dssp             CCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             ceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceee
Confidence            445567666656667899999996      58999999999974

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.09  E-value=8.3e-07  Score=52.80  Aligned_cols=36  Identities=17%  Similarity=0.369  Sum_probs=28.7

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE---CCeEEeecCCCe
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV---NGTTGAFPMSYV  151 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~---~g~~g~~p~~~~  151 (162)
                      +..+.|-+-...-+.|++||.|++   +|++|+||++|+
T Consensus        45 LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          45 ISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             ccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            445567766666667999999999   799999999873

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.8e-06  Score=47.27  Aligned_cols=37  Identities=16%  Similarity=0.388  Sum_probs=25.5

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEe
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQF  153 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~  153 (162)
                      +.-+.|-+-.. ++.+++||.++.  +|+.|+||++||++
T Consensus        23 Ls~~~Gd~i~v-~~~~~~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1          23 LGFEKGEQLRI-LEQSGEWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             CCBCTTCEEEE-EECCSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cCCCCCCEEEE-eEEcCCCEEEEeccCCeEeEEcHHHEEe
Confidence            34444544432 234667888875  69999999999986

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.5e-06  Score=47.82  Aligned_cols=25  Identities=16%  Similarity=0.555  Sum_probs=22.5

Q ss_pred             ecCCCeEEEEecCCCCceeeeeEEe
Q psy9673         106 KIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       106 ~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ..+.+||.|+.+|+.|+||++||++
T Consensus        37 ~~~~gW~~g~~~g~~G~~P~~yv~~   61 (63)
T d1ycsb2          37 EDEIEWWWARLNDKEGYVPRNLLGL   61 (63)
T ss_dssp             TSCSSEEEEEETTEEEEEEGGGEEC
T ss_pred             CCCCCEEEEEECCeEEEEchHHhEe
Confidence            4578999999999999999999974

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=4.4e-06  Score=45.03  Aligned_cols=22  Identities=45%  Similarity=1.167  Sum_probs=19.8

Q ss_pred             CCCeEEEEecCCCCceeeeeEEe
Q psy9673         108 DNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       108 ~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      +. ||.++.+|++|+||+|||++
T Consensus        36 ~~-W~~~~~~g~~G~vP~~yve~   57 (58)
T d1oota_          36 ND-WWTGRVNGREGIFPANYVEL   57 (58)
T ss_dssp             TS-EEEEEETTEEEEEEGGGEEE
T ss_pred             CC-EEEEEECCcEEEEcHHHEEE
Confidence            45 99999999999999999985

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=7.3e-06  Score=52.57  Aligned_cols=36  Identities=19%  Similarity=0.357  Sum_probs=29.4

Q ss_pred             ecCCCCceeeeeEEecCCeEEEEE---CCeEEeecCCCe
Q psy9673         116 VNGTTGAFPMSYVQIDNNWFYGEV---NGTTGAFPMSYV  151 (162)
Q Consensus       116 ~~~~~G~~P~~~v~~~~~w~~g~~---~g~~g~~p~~~~  151 (162)
                      +..+.|-+-.-+-..|++||.|+.   +|+.|+||++|+
T Consensus        47 LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~   85 (145)
T d1vyva1          47 VSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLR   85 (145)
T ss_dssp             CCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHH
T ss_pred             ccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchh
Confidence            455567777777777999999998   799999999764

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=7.6e-06  Score=46.95  Aligned_cols=25  Identities=32%  Similarity=0.760  Sum_probs=22.5

Q ss_pred             ecCCCeEEEEecCCCCceeeeeEEe
Q psy9673         106 KIDNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       106 ~~~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      ..+++||.++.+|+.|+||++||++
T Consensus        47 ~~~~~W~~g~~~g~~G~vP~~yv~~   71 (79)
T d1uhca_          47 TGNTEWWLAEVNGKKGYVPSNYIRK   71 (79)
T ss_dssp             TSCTTEEEEESSSCEEEEEGGGEEE
T ss_pred             CCCCCEEEEEECCCEEEEehhhEEE
Confidence            4467999999999999999999986

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=5.4e-06  Score=47.99  Aligned_cols=23  Identities=35%  Similarity=0.793  Sum_probs=19.8

Q ss_pred             CCCeEEEEe--cCCCCceeeeeEEe
Q psy9673         108 DNNWFYGEV--NGTTGAFPMSYVQI  130 (162)
Q Consensus       108 ~~~w~~g~~--~~~~G~~P~~~v~~  130 (162)
                      +++||.|+.  .|+.|+||+|||+.
T Consensus        50 ~~GW~~G~~~~~g~~G~FP~nYVe~   74 (83)
T d1phta_          50 EIGWLNGYNETTGERGDFPGTYVEY   74 (83)
T ss_dssp             HHCEEEEEETTTTEEEEEEGGGEEE
T ss_pred             CCCeEEEEECCCCcEeeEehhhEEE
Confidence            558999984  78899999999975

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1.3e-05  Score=47.24  Aligned_cols=23  Identities=17%  Similarity=0.156  Sum_probs=21.4

Q ss_pred             CCCeEEEEecCCCCceeeeeEEe
Q psy9673         108 DNNWFYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       108 ~~~w~~g~~~~~~G~~P~~~v~~  130 (162)
                      +.+||.++.+|+.|+||+|||++
T Consensus        53 ~~~Ww~~~~~g~~G~~P~~yv~~   75 (92)
T d1ug1a_          53 SQNRWLIDNGVTKGFVYSSFLKP   75 (92)
T ss_dssp             CSSEEEEECSSSEEEEEGGGEEE
T ss_pred             cCCceEEEecccEEEEEhhhcee
Confidence            57999999999999999999986

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=2.2e-05  Score=45.38  Aligned_cols=16  Identities=25%  Similarity=0.607  Sum_probs=13.4

Q ss_pred             EecCCCCceeeeeEEe
Q psy9673         115 EVNGTTGAFPMSYVQI  130 (162)
Q Consensus       115 ~~~~~~G~~P~~~v~~  130 (162)
                      ..+|+.|+||+|||+.
T Consensus        66 ~~~g~~G~fP~nyVe~   81 (83)
T d1bb9a_          66 ELEKCRGVFPENFTER   81 (83)
T ss_dssp             CHHHHCEEEEGGGEEE
T ss_pred             cCCCCEEEEchhHeEE
Confidence            3677899999999974

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=5.7e-05  Score=42.18  Aligned_cols=25  Identities=24%  Similarity=0.599  Sum_probs=19.8

Q ss_pred             EecCCCeEEEE-ecCCCCceeeeeEEe
Q psy9673         105 RKIDNNWFYGE-VNGTTGAFPMSYVQI  130 (162)
Q Consensus       105 ~~~~~~w~~g~-~~~~~G~~P~~~v~~  130 (162)
                      +..+. ||.++ .+|+.|+||+|||++
T Consensus        38 ~~~~~-Ww~~~~~~G~~G~vP~~yv~~   63 (71)
T d1u5sa1          38 ENDPE-WWKCKNARGQVGLVPKNYVVV   63 (71)
T ss_dssp             CTTTC-EEEEEETTTEEEEEETTSEEE
T ss_pred             cCCCC-eEEEEECCCCEEEEChHHEEE
Confidence            34556 77776 678999999999986

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.98  E-value=0.00016  Score=45.56  Aligned_cols=33  Identities=18%  Similarity=0.389  Sum_probs=25.1

Q ss_pred             CCCceeeeeEEecCCeEEEEE---CCeEEeecCCCe
Q psy9673         119 TTGAFPMSYVQIDNNWFYGEV---NGTTGAFPMSYV  151 (162)
Q Consensus       119 ~~G~~P~~~v~~~~~w~~g~~---~g~~g~~p~~~~  151 (162)
                      +.|-|-.-.-+.|++||.|++   +|..|+||+.|+
T Consensus        50 ~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          50 EAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             CTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             CCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            345554444555999999998   689999999883

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.0002  Score=37.89  Aligned_cols=13  Identities=38%  Similarity=0.920  Sum_probs=8.2

Q ss_pred             CCeEEeecCCCeE
Q psy9673         140 NGTTGAFPMSYVQ  152 (162)
Q Consensus       140 ~g~~g~~p~~~~~  152 (162)
                      +|++|+||++|||
T Consensus        43 ~g~~G~~P~nyve   55 (56)
T d1zuua1          43 TGETGLVPTTYIR   55 (56)
T ss_dssp             TTEEEEEEGGGEE
T ss_pred             CceEEEEehhhEE
Confidence            4666666666665

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.00096  Score=36.73  Aligned_cols=17  Identities=35%  Similarity=0.817  Sum_probs=14.2

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      ++.+++.|+||.+||++
T Consensus        45 ~~~~g~~G~vP~~yv~~   61 (69)
T d1uhfa_          45 GSIGDRSGIFPSNYVKP   61 (69)
T ss_dssp             ECSTTCCEEECGGGCEE
T ss_pred             EEECCcEEEEchhhEEE
Confidence            44567899999999987

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0017  Score=37.76  Aligned_cols=19  Identities=42%  Similarity=0.889  Sum_probs=16.4

Q ss_pred             EEEEecCCCCceeeeeEEe
Q psy9673         112 FYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       112 ~~g~~~~~~G~~P~~~v~~  130 (162)
                      |.++.+|+.|+||++||++
T Consensus        43 ~~~~~~g~~G~~P~~Yve~   61 (93)
T d1uffa_          43 LYGSFQGNFGWFPCNYVEK   61 (93)
T ss_dssp             EEEEETTEEEEEETTTEEE
T ss_pred             EEEEeCCcEEEEchHHEEE
Confidence            3567889999999999986

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.50  E-value=0.0019  Score=34.01  Aligned_cols=17  Identities=18%  Similarity=0.409  Sum_probs=13.7

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      ++.+|++|+||++||++
T Consensus        39 ~~~~g~~G~~P~~yv~~   55 (57)
T d1opka1          39 AQTKNGQGWVPSNYITP   55 (57)
T ss_dssp             EECSSCEEEEEGGGEEE
T ss_pred             EEECCCEeEEchhheEE
Confidence            44567889999999985

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0029  Score=34.21  Aligned_cols=12  Identities=33%  Similarity=0.587  Sum_probs=10.4

Q ss_pred             CCCceeeeeEEe
Q psy9673         119 TTGAFPMSYVQI  130 (162)
Q Consensus       119 ~~G~~P~~~v~~  130 (162)
                      +.|+||+|||+.
T Consensus        48 ~~G~vP~~yv~~   59 (65)
T d1qcfa1          48 KEGYIPSNYVAR   59 (65)
T ss_dssp             CEEEEEGGGEEE
T ss_pred             CEEEEchHHeEE
Confidence            469999999986

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.07  E-value=0.0032  Score=34.83  Aligned_cols=18  Identities=44%  Similarity=0.857  Sum_probs=14.0

Q ss_pred             EEEe--cCCCCceeeeeEEe
Q psy9673         113 YGEV--NGTTGAFPMSYVQI  130 (162)
Q Consensus       113 ~g~~--~~~~G~~P~~~v~~  130 (162)
                      .|+.  .++.|+||+|||++
T Consensus        46 ~g~~~~~g~~G~fP~nyVe~   65 (72)
T d1spka_          46 YGEHDTTKARGWFPSSYTKL   65 (72)
T ss_dssp             EEEETTTCCEEEEEGGGCEE
T ss_pred             EEEECCCCCEEEEchhhEEE
Confidence            4443  36789999999986

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0031  Score=34.88  Aligned_cols=19  Identities=42%  Similarity=0.831  Sum_probs=16.2

Q ss_pred             EEEEecCCCCceeeeeEEe
Q psy9673         112 FYGEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       112 ~~g~~~~~~G~~P~~~v~~  130 (162)
                      |.++.+|+.|+||.+||++
T Consensus        47 ~~g~~~g~~G~~P~~yve~   65 (72)
T d1ugva_          47 LEGTLNGKTGLIPENYVEF   65 (72)
T ss_dssp             EEEESSSCEEEEEGGGEEE
T ss_pred             EEEEeCCCEEEEchHHEEE
Confidence            4667788999999999986

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.049  Score=29.33  Aligned_cols=47  Identities=30%  Similarity=0.653  Sum_probs=32.3

Q ss_pred             CccccccccccccCC-CEEcc--cCCccchhcHHHHHhc---CCCcccccccc
Q psy9673           8 DLLECSVCLDRLDTS-SKVLP--CQHTFCKKCLEEIVSS---HKELRCPECRV   54 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~-p~~~~--C~H~fC~~Cl~~~~~~---~~~~~Cp~Cr~   54 (162)
                      ..+.|.+|.+.+.+. -+..|  =+|.||.-|-+..+..   .+...||.=.+
T Consensus         7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~q~~~~evyCPSG~k   59 (80)
T d2cs3a1           7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEK   59 (80)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSC
T ss_pred             CceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHhcCCCCcEECCCCCc
Confidence            458899999999743 23333  4699999999877763   23456665544

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.016  Score=33.80  Aligned_cols=14  Identities=29%  Similarity=0.752  Sum_probs=12.4

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      +|+.|+||+|||+.
T Consensus        66 ~G~~G~~P~nyve~   79 (96)
T d1wiea_          66 DGQRGLVPSNFVDF   79 (96)
T ss_dssp             TCCBCBCCTTSEEC
T ss_pred             CCCEEEEehHHeEE
Confidence            57889999999986

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.02  Score=31.26  Aligned_cols=14  Identities=43%  Similarity=0.726  Sum_probs=12.2

Q ss_pred             cCCCCceeeeeEEe
Q psy9673         117 NGTTGAFPMSYVQI  130 (162)
Q Consensus       117 ~~~~G~~P~~~v~~  130 (162)
                      .|+.|+||.+||+.
T Consensus        49 ~g~~G~~P~~yve~   62 (71)
T d1k9aa1          49 VGREGIIPANYVQK   62 (71)
T ss_dssp             TCCEEEEEGGGEEE
T ss_pred             CCCEEEEchHHeEE
Confidence            36889999999986

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.066  Score=26.94  Aligned_cols=44  Identities=27%  Similarity=0.710  Sum_probs=29.4

Q ss_pred             ccccccccccCCCEEc--ccCCccchhcHHHHHhc--CCCcccccccc
Q psy9673          11 ECSVCLDRLDTSSKVL--PCQHTFCKKCLEEIVSS--HKELRCPECRV   54 (162)
Q Consensus        11 ~C~iC~~~~~~~p~~~--~C~H~fC~~Cl~~~~~~--~~~~~Cp~Cr~   54 (162)
                      .|.||...-.....++  .|...|+..|+...+..  ...+.|+.|+.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            5888876554232332  48889999999765443  23578999975

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.51  E-value=0.066  Score=22.94  Aligned_cols=14  Identities=29%  Similarity=0.873  Sum_probs=11.4

Q ss_pred             CCcccccccccccc
Q psy9673           7 NDLLECSVCLDRLD   20 (162)
Q Consensus         7 ~~~l~C~iC~~~~~   20 (162)
                      ++.+.|++|++.|.
T Consensus         2 eqvftcs~cqe~f~   15 (30)
T d2dlqa3           2 EQVFTCSVCQETFR   15 (30)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             cceEEeHHHHHHHH
Confidence            56788999998887

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.51  E-value=0.16  Score=28.14  Aligned_cols=33  Identities=24%  Similarity=0.694  Sum_probs=24.8

Q ss_pred             CCCccccccccccccCCCEEcc---cCCccchhcHHHH
Q psy9673           6 LNDLLECSVCLDRLDTSSKVLP---CQHTFCKKCLEEI   40 (162)
Q Consensus         6 ~~~~l~C~iC~~~~~~~p~~~~---C~H~fC~~Cl~~~   40 (162)
                      ...+..|.|| +.+. .-..+|   |+..|+..|+.+.
T Consensus        12 v~~D~mC~vC-~v~t-~~~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          12 VVNDEMCDVC-EVWT-AESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTT-CCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCcCcccccc-Cccc-ccceecceeecchhhHHHHHHh
Confidence            4567889999 5665 334445   7789999999986

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.064  Score=31.65  Aligned_cols=17  Identities=35%  Similarity=0.610  Sum_probs=14.0

Q ss_pred             EEecCCCCceeeeeEEe
Q psy9673         114 GEVNGTTGAFPMSYVQI  130 (162)
Q Consensus       114 g~~~~~~G~~P~~~v~~  130 (162)
                      ...+|+.|+||+|||++
T Consensus        70 ~~~~g~~G~fP~nyV~~   86 (106)
T d1i1ja_          70 GDLAARLGYFPSSIVRE   86 (106)
T ss_dssp             TCBCSCCEEEEGGGEEE
T ss_pred             cccCCcccccccccEEE
Confidence            34567899999999986

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=86.88  E-value=0.017  Score=31.23  Aligned_cols=41  Identities=32%  Similarity=0.659  Sum_probs=29.6

Q ss_pred             ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ++.||.|+..+..     .=+|.+|..|-..+...   ..||.|..++.
T Consensus         2 ~~~CP~C~~eL~~-----~~~~~~C~~C~~~~~~~---a~CPdC~~~Le   42 (71)
T d2jnea1           2 ELHCPQCQHVLDQ-----DNGHARCRSCGEFIEMK---ALCPDCHQPLQ   42 (71)
T ss_dssp             CCBCSSSCSBEEE-----ETTEEEETTTCCEEEEE---EECTTTCSBCE
T ss_pred             CCcCCCccCcccc-----cCCCEehhhhhhhheeE---EeCCccccHHH
Confidence            5689999988872     12677888887654432   37999988875

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.62  E-value=0.3  Score=25.27  Aligned_cols=42  Identities=29%  Similarity=0.654  Sum_probs=27.8

Q ss_pred             CccccccccccccCCCEEc---ccCCccchhcHHHHHhcCCCcccccc
Q psy9673           8 DLLECSVCLDRLDTSSKVL---PCQHTFCKKCLEEIVSSHKELRCPEC   52 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~---~C~H~fC~~Cl~~~~~~~~~~~Cp~C   52 (162)
                      ....|.-|+..+.+. ...   .|++.||..|=  .+.+..--.||-|
T Consensus        14 ~~~~C~gC~~~l~~~-~~y~C~~C~~~FC~dCD--~fiHe~lh~CpgC   58 (59)
T d1z60a1          14 GERFCYGCQGELKDQ-HVYVCAVCQNVFCVDCD--VFVHDSLHSCPGC   58 (59)
T ss_dssp             SCCEETTTTEECTTS-EEECCTTTTCCBCHHHH--HTTTTTSCSSSTT
T ss_pred             CCCCccCCCCcCCCC-ceEECcCCCCccccccc--hhhhhhhcCCCCC
Confidence            345688999888733 333   48899999993  3343333478877

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.47  E-value=0.13  Score=27.91  Aligned_cols=46  Identities=20%  Similarity=0.397  Sum_probs=28.1

Q ss_pred             CccccccccccccCCCEEcc----cC-CccchhcHHHHHhcCCCccccccccc
Q psy9673           8 DLLECSVCLDRLDTSSKVLP----CQ-HTFCKKCLEEIVSSHKELRCPECRVL   55 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p~~~~----C~-H~fC~~Cl~~~~~~~~~~~Cp~Cr~~   55 (162)
                      +...| ||.+... .-.++-    |- .-|+..|+.-.....+.+.||.|+..
T Consensus        15 e~~~C-iC~~~~~-~~~i~c~~~~C~~~wfH~~Cvgl~~~p~~~w~C~~C~~~   65 (71)
T d1wesa_          15 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD   65 (71)
T ss_dssp             SCCCS-TTCCCCC-SSEECCSCTTCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred             CCCEE-EeCCCCC-CCEEEEECCCCCCcCccCccCCCCcCCCCcEECcCCccc
Confidence            34567 9997665 334332    33 35899998522122346899999764

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.13  E-value=0.66  Score=25.32  Aligned_cols=24  Identities=17%  Similarity=0.486  Sum_probs=11.2

Q ss_pred             CCCceeeeeEEecCCeEEEEECCe
Q psy9673         119 TTGAFPMSYVQIDNNWFYGEVNGT  142 (162)
Q Consensus       119 ~~G~~P~~~v~~~~~w~~g~~~g~  142 (162)
                      +.|-+-...-+.+++||.|+++++
T Consensus        27 ~~Gd~i~Vl~~~~~~Ww~g~~~~~   50 (80)
T d1ue9a_          27 APGQLILILKKNTSGWWQGELQAR   50 (80)
T ss_dssp             CTTCEEEEEEECSSSEEEEEECSC
T ss_pred             cCCCEEEEEEEeCCCeEEEEEccC
Confidence            334433333334555666655443

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.87  E-value=0.19  Score=27.26  Aligned_cols=42  Identities=24%  Similarity=0.571  Sum_probs=26.7

Q ss_pred             ccccccccccccCC----CEEc-ccCCccchhcHHHHHhcCCCcccc
Q psy9673           9 LLECSVCLDRLDTS----SKVL-PCQHTFCKKCLEEIVSSHKELRCP   50 (162)
Q Consensus         9 ~l~C~iC~~~~~~~----p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp   50 (162)
                      ...||-|...+..+    -++- .|++.||..|-.+|...+...+|.
T Consensus        18 ~k~CP~C~~~~~~~~~~~~~~C~~C~~~fC~~C~~~w~~~H~~~tC~   64 (73)
T d2ct7a1          18 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCE   64 (73)
T ss_dssp             EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHH
T ss_pred             CCCCCCCCCEeEECCCCCEEEcCCCCCeECcccCcchhcCCCCCCHH
Confidence            34688888766421    2333 689999999988775444333443

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.59  E-value=0.27  Score=26.97  Aligned_cols=37  Identities=19%  Similarity=0.171  Sum_probs=26.1

Q ss_pred             cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeee
Q psy9673          90 ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMS  126 (162)
Q Consensus        90 ~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~  126 (162)
                      ..+|.+++|+.|.|+...+++-|-++ ..|+=|.++.+
T Consensus        36 ~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~   73 (77)
T d1ri9a_          36 TRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRS   73 (77)
T ss_dssp             TTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGG
T ss_pred             cccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEee
Confidence            45899999999999888887666665 34454555443

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.22  E-value=0.58  Score=25.98  Aligned_cols=48  Identities=23%  Similarity=0.533  Sum_probs=33.7

Q ss_pred             cccccccccccc----CCCEEc--ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673           9 LLECSVCLDRLD----TSSKVL--PCQHTFCKKCLEEIVSSHKELRCPECRVLVE   57 (162)
Q Consensus         9 ~l~C~iC~~~~~----~~p~~~--~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~   57 (162)
                      ...|.||.+.+-    .++.+.  .|+-..|..|..=-... +...||.|+..++
T Consensus        16 ~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke-G~q~CpqCkt~Yk   69 (93)
T d1weoa_          16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE-GTQNCPQCKTRYK   69 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT-SCSSCTTTCCCCC
T ss_pred             cchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhc-cCccCcccCChhh
Confidence            346999998873    134444  37778899998744443 4458999999886

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.17  E-value=0.23  Score=21.57  Aligned_cols=11  Identities=36%  Similarity=0.782  Sum_probs=5.6

Q ss_pred             ccccccccccc
Q psy9673          10 LECSVCLDRLD   20 (162)
Q Consensus        10 l~C~iC~~~~~   20 (162)
                      ++|+||+..|.
T Consensus         4 ~~cpic~qrfk   14 (32)
T d2epqa1           4 YSCPVCGLRFK   14 (32)
T ss_dssp             SEETTTTEECS
T ss_pred             cccchHHHHhh
Confidence            44555555554

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.06  E-value=0.27  Score=25.76  Aligned_cols=48  Identities=21%  Similarity=0.497  Sum_probs=31.7

Q ss_pred             CccccccccccccCCC-EEc--ccCCccchhcHHHHH---hcCCCccccccccc
Q psy9673           8 DLLECSVCLDRLDTSS-KVL--PCQHTFCKKCLEEIV---SSHKELRCPECRVL   55 (162)
Q Consensus         8 ~~l~C~iC~~~~~~~p-~~~--~C~H~fC~~Cl~~~~---~~~~~~~Cp~Cr~~   55 (162)
                      ....|.+|.+...+.. .+.  .|+.-|+..|+....   .....+.||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            4568999998776433 232  488889999985211   12245899999763