Psyllid ID: psy9690

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRKGETKPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRKQ
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHccccHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHcccccHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHccHHHHccccHHHHHHHHHccccHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mfdqkstgseRHEFLQTILhqddeeeeenevpddetVNQLIARTEDELTLFQKMDAErrkgetkprlveikelpdwmvkdddeveNSMYEEEREREKEEALMgrgsrqrkq
Flexible Loop (DISEMBL)
mfdqkstgserheflqtilhqddeeeeenevpddetvnqliartedeltlfqkmdaerrkgetkprlveikelpdwmvkdddeVENSMyeeererekeealmgrgsrqrkq
Low Complexity Region (SEG)
MFDQKSTGSERHEFLQTILHQddeeeeenevpddeTVNQLIARTEDELTLFQKMDAERRKGETKPRLVEIKELPDWMVKDDDEVENSMYeeererekeeALMGRGSRQRKQ
Disordered region (IsUnstruct)
***************************************************************************************************************
Disordered Region (DISOPRED)
MFDQKSTGSERHEFLQ******************ETVNQLIARTEDELTLFQKMDAERRK*ETKPRLVEIKELPDWMVKDDDEV********************G******
Disordered Region (DISEMBL)
************EFLQTILHQ*************ETVNQLIARTEDELTLFQKMDA********PRLVEIKELPDWMVKDDDEV***************************
Disordered Region (DISPRO)
*******************HQDD******EVPDDETVNQLIARTEDELTLFQKMDAERRKGETKPRLVEIKELPDWMVKDDDEVENSMYEEE*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRKGETKPRLVEIKELPDWMVxxxxxxxxxxxxxxxxxxxxxALMGRGSRQRKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
P25439	1638	ATP-dependent helicase br	yes	N/A	0.945	0.064	0.612	8e-22
P51532	1647	Transcription activator B	yes	N/A	0.945	0.063	0.432	1e-18
A7Z019	1606	Transcription activator B	yes	N/A	0.945	0.065	0.556	4e-17
Q8K1P7	1613	Transcription activator B	yes	N/A	0.945	0.065	0.556	4e-17
Q3TKT4	1613	Transcription activator B	yes	N/A	0.945	0.065	0.556	4e-17
Q6DIC0	1577	Probable global transcrip	no	N/A	0.945	0.066	0.547	1e-16
P51531	1590	Probable global transcrip	no	N/A	0.945	0.066	0.547	2e-16
O94421	1680	SWI/SNF chromatin-remodel	yes	N/A	0.837	0.055	0.396	1e-09
Q9UTN6	1199	Chromatin structure-remod	no	N/A	0.891	0.082	0.376	5e-07
P22082	1703	Transcription regulatory	yes	N/A	0.927	0.060	0.322	2e-05

>sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2

 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 90/116 (77%), Gaps = 11/116 (9%)

Query: 1    MFDQKSTGSERHEFLQTILHQ-DDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERR 59
            MFDQKSTGSER +FLQTILHQ D+EEEEENEVPDDE +N +IAR+E+E+ +F++MDAER+
Sbjct: 1251 MFDQKSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEIEIFKRMDAERK 1310

Query: 60   K--GETKP---RLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
            K   E  P   RL++  ELPDW+ KDDDEVE   Y+ +     E+ ++GRGSRQRK
Sbjct: 1311 KEDEEIHPGRERLIDESELPDWLTKDDDEVERFHYQYD-----EDTILGRGSRQRK 1361

Transcriptional regulator. Act as coactivator, assisting one or more dedicated transcriptional activators of ANTC and BXC homeotic gene clusters. Can counteract the repressive effect of Polycomb protein. ATPase subunit of the Brahma complex, a multiprotein complex which is the equivalent of the yeast SWI/SNF complex and acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. This complex can both serve as a transcriptional coactivator or corepressor, depending on the context.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 80/148 (54%), Gaps = 43/148 (29%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEE---------------------------------E 27
            MFDQKS+  ER  FLQ IL  ++++E                                 E
Sbjct: 1233 MFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKE 1292

Query: 28   ENEVPDDETVNQLIARTEDELTLFQKMDAERRKGET-----KPRLVEIKELPDWMVKDDD 82
            E+EVPDDETVNQ+IAR E+E  LF +MD +RR+ E      KPRL+E  ELP W++KDD 
Sbjct: 1293 EDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDA 1352

Query: 83   EVENSMYEEEREREKEEALMGRGSRQRK 110
            EVE    EEE E+     + GRGSR RK
Sbjct: 1353 EVERLTCEEEEEK-----MFGRGSRHRK 1375

Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues (By similarity). Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 80/115 (69%), Gaps = 10/115 (8%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRK 60
            MFDQKS+  ER  FLQ IL  ++++EEE+EVPDDETVNQ+IAR E+E  LF +MD +RR+
Sbjct: 1225 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 1284

Query: 61   GET-----KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
             E      KPRL+E  ELP W++KDD EVE    EEE E+     + GRGSR RK
Sbjct: 1285 EEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEK-----MFGRGSRHRK 1334

Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-fOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 80/115 (69%), Gaps = 10/115 (8%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRK 60
            MFDQKS+  ER  FLQ IL  ++++EEE+EVPDDETVNQ+IAR E+E  LF +MD +RR+
Sbjct: 1233 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 1292

Query: 61   GET-----KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
             E      KPRL+E  ELP W++KDD EVE    EEE E+     + GRGSR RK
Sbjct: 1293 EEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEK-----MFGRGSRHRK 1342

Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 80/115 (69%), Gaps = 10/115 (8%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRK 60
            MFDQKS+  ER  FLQ IL  ++++EEE+EVPDDETVNQ+IAR E+E  LF +MD +RR+
Sbjct: 1233 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 1292

Query: 61   GET-----KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
             E      KPRL+E  ELP W++KDD EVE    EEE E+     + GRGSR RK
Sbjct: 1293 EEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEK-----MFGRGSRHRK 1342

Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 80/115 (69%), Gaps = 10/115 (8%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRK 60
            MFDQKS+  ER  FLQ IL  ++E EEE+EVPDDET+NQ+IAR E+E  LF +MD +RR+
Sbjct: 1208 MFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRR 1267

Query: 61   -----GETKPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
                  + KPRL+E  ELP W++KDD EVE    EEE E+     + GRGSRQR+
Sbjct: 1268 EDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEK-----IFGRGSRQRR 1317

Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 80/115 (69%), Gaps = 10/115 (8%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRK 60
            MFDQKS+  ER  FLQ IL  ++E EEE+EVPDDET+NQ+IAR E+E  LF +MD +RR+
Sbjct: 1203 MFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRR 1262

Query: 61   -----GETKPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
                  + KPRL+E  ELP W++KDD EVE    EEE E+     + GRGSRQR+
Sbjct: 1263 EDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEK-----IFGRGSRQRR 1312

Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf22 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 18/111 (16%)

Query: 2    FDQKSTGSERHEFLQTILHQD---DEEEEENEVPDDETVNQLIARTEDELTLFQKMDAER 58
            FD KST  ER  FL+++L  D   D +    E+ DDE +N+LI+RT++EL LF+K+D ER
Sbjct: 1341 FDNKSTPEEREAFLRSLLEHDGDDDHDLTYGELQDDE-LNELISRTDEELVLFKKLDKER 1399

Query: 59   RK----GETKP--RLVEIKELPDWM--------VKDDDEVENSMYEEERER 95
                  G+ KP  RL+ + ELPD+         V+   E+E+   E +R R
Sbjct: 1400 AATDIYGKGKPLERLLTVNELPDFYKVEVDSFAVQSSSELEDQYLERKRRR 1450

Helicase. Component of the SWI/SNF complex, an ATP-dependent chromatin remodeling complex, required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 72/117 (61%), Gaps = 18/117 (15%)

Query: 2   FDQKSTGSERHEFLQTILHQDDEEEE---ENEVPDDETVNQLIARTEDELTLFQKM--DA 56
           FD KST  ER  FL+++L  ++ EEE   + E+ DDE +N+++AR +DEL LF++M  D 
Sbjct: 890 FDNKSTPEEREAFLRSLLENENGEEENDEKGELDDDE-LNEILARGDDELRLFKQMTEDL 948

Query: 57  ERR----KGETKPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQR 109
           ER     K + K RL+++ ELP++  +++ E    + +EE         +GRG+R+R
Sbjct: 949 ERESPYGKNKEKERLIQVSELPEFYQREEPEKTTDLLQEEP--------LGRGARRR 997

Helicase. Component of the chromatin structure remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. Controls particularly membrane and organelle development genes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 18/121 (14%)

Query: 2    FDQKSTGSERHEFLQTILHQDDEEEEENEVP-------DDETVNQLIARTEDELTLFQKM 54
            FD KST  E+   L+++L  ++E  ++ E          D  +N+++AR ++E+ +  +M
Sbjct: 1241 FDNKSTSEEQEALLRSLLDAEEERRKKRESGVEEEEELKDSEINEILARNDEEMAVLTRM 1300

Query: 55   DAERRKGE----TKPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALM-GRGSRQR 109
            D +R K E     K RL+E  ELPD   +D         E +RE  +  A+  GRG+R+R
Sbjct: 1301 DEDRSKKEEELGVKSRLLEKSELPDIYSRDIGA------ELKREESESAAVYNGRGARER 1354

Query: 110  K 110
            K
Sbjct: 1355 K 1355

Involved in transcriptional activation. Catalytic component of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
118781463	1529	AGAP010462-PA [Anopheles gambiae str. PE	0.936	0.068	0.630	2e-27
307214999	1322	ATP-dependent helicase brm [Harpegnathos	0.945	0.079	0.626	2e-27
340717205	2009	PREDICTED: ATP-dependent helicase brm-li	0.945	0.052	0.641	2e-27
383854229	2017	PREDICTED: ATP-dependent helicase brm-li	0.945	0.052	0.641	2e-27
350407682	2009	PREDICTED: ATP-dependent helicase brm-li	0.945	0.052	0.641	2e-27
307179542	1996	ATP-dependent helicase brm [Camponotus f	0.945	0.052	0.632	2e-27
332025170	1953	ATP-dependent helicase brm [Acromyrmex e	0.945	0.053	0.632	2e-27
328793843	2018	PREDICTED: ATP-dependent helicase brm [A	0.945	0.052	0.641	3e-27
380022521	2019	PREDICTED: LOW QUALITY PROTEIN: ATP-depe	0.945	0.052	0.641	3e-27
312380716	1492	hypothetical protein AND_07156 [Anophele	0.945	0.070	0.621	1e-26

>gi|118781463|ref|XP_311484.3| AGAP010462-PA [Anopheles gambiae str. PEST] gi|116129961|gb|EAA07201.4| AGAP010462-PA [Anopheles gambiae str. PEST]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 88/111 (79%), Gaps = 7/111 (6%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENE-VPDDETVNQLIARTEDELTLFQKMDAERR 59
            MFDQKSTGSER +FLQ+ILHQD+ +EEE   VPDDE +N +I+RT+DEL LF+KMDAER+
Sbjct: 1250 MFDQKSTGSERQQFLQSILHQDEMDEEEENEVPDDEMINLMISRTDDELELFKKMDAERK 1309

Query: 60   KGETKPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
              E KPRL++  ELPDW+VKDD+EV+   YEE      E +++GRGSRQRK
Sbjct: 1310 AEEVKPRLLDEAELPDWLVKDDEEVDRWDYEE------ETSILGRGSRQRK 1354

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214999|gb|EFN89841.1| ATP-dependent helicase brm [Harpegnathos saltator]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 86/115 (74%), Gaps = 10/115 (8%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENE-VPDDETVNQLIARTEDELTLFQKMDAERR 59
            MFDQKSTGSER +FLQ+ILHQDD ++EE   VPDDETVNQ+IARTE E  +FQK+D ER 
Sbjct: 981  MFDQKSTGSERQQFLQSILHQDDADDEEENEVPDDETVNQMIARTEGEFEIFQKLDVERE 1040

Query: 60   KGETKP----RLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
            +    P    RL+E  ELPDW+VKDDDEVE   YEE+++R      +GRGSRQRK
Sbjct: 1041 EANMGPNRKSRLLEEAELPDWLVKDDDEVERWTYEEDKDR-----FLGRGSRQRK 1090

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717205|ref|XP_003397077.1| PREDICTED: ATP-dependent helicase brm-like [Bombus terrestris]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 87/117 (74%), Gaps = 12/117 (10%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENE-VPDDETVNQLIARTEDELTLFQKMDAERR 59
            MFDQKSTGSER +FLQ+ILHQDD E+EE   VPDDETVNQ+IARTE E  +FQK+D ERR
Sbjct: 1665 MFDQKSTGSERQQFLQSILHQDDAEDEEENEVPDDETVNQMIARTEGEFEIFQKLDLERR 1724

Query: 60   KGET------KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
            + E       K RL+E  ELPDW+VKDDDEVE   YEE+ +R      +GRGSRQRK
Sbjct: 1725 REEAKLGPNRKSRLLEEAELPDWLVKDDDEVERWTYEEDEDR-----FLGRGSRQRK 1776

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854229|ref|XP_003702624.1| PREDICTED: ATP-dependent helicase brm-like [Megachile rotundata]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 87/117 (74%), Gaps = 12/117 (10%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENE-VPDDETVNQLIARTEDELTLFQKMDAERR 59
            MFDQKSTGSER +FLQ+ILHQDD E+EE   VPDDETVNQ+IARTE E  +FQK+D ERR
Sbjct: 1673 MFDQKSTGSERQQFLQSILHQDDAEDEEENEVPDDETVNQMIARTEGEFEIFQKLDLERR 1732

Query: 60   KGET------KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
            + E       K RL+E  ELPDW+VKDDDEVE   YEE+ +R      +GRGSRQRK
Sbjct: 1733 REEAKLGPNRKSRLLEEAELPDWLVKDDDEVERWTYEEDEDR-----FLGRGSRQRK 1784

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407682|ref|XP_003488159.1| PREDICTED: ATP-dependent helicase brm-like [Bombus impatiens]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 87/117 (74%), Gaps = 12/117 (10%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENE-VPDDETVNQLIARTEDELTLFQKMDAERR 59
            MFDQKSTGSER +FLQ+ILHQDD E+EE   VPDDETVNQ+IARTE E  +FQK+D ERR
Sbjct: 1665 MFDQKSTGSERQQFLQSILHQDDAEDEEENEVPDDETVNQMIARTEGEFEIFQKLDLERR 1724

Query: 60   KGET------KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
            + E       K RL+E  ELPDW+VKDDDEVE   YEE+ +R      +GRGSRQRK
Sbjct: 1725 REEAKLGPNRKSRLLEEAELPDWLVKDDDEVERWTYEEDEDR-----FLGRGSRQRK 1776

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179542|gb|EFN67856.1| ATP-dependent helicase brm [Camponotus floridanus]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/117 (63%), Positives = 87/117 (74%), Gaps = 12/117 (10%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENE-VPDDETVNQLIARTEDELTLFQKMDAERR 59
            MFDQKSTGSER +FLQ+ILHQDD ++EE   VPDDETVNQ+IARTE E  +FQK+D ERR
Sbjct: 1653 MFDQKSTGSERQQFLQSILHQDDADDEEENEVPDDETVNQMIARTEGEFEIFQKLDLERR 1712

Query: 60   KGET------KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
            + E       K RL+E  ELPDW+VKDDDEVE   YEE+ +R      +GRGSRQRK
Sbjct: 1713 REEAKLGANRKSRLLEEAELPDWLVKDDDEVERWTYEEDEDR-----FLGRGSRQRK 1764

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025170|gb|EGI65350.1| ATP-dependent helicase brm [Acromyrmex echinatior]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/117 (63%), Positives = 87/117 (74%), Gaps = 12/117 (10%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENE-VPDDETVNQLIARTEDELTLFQKMDAERR 59
            MFDQKSTGSER +FLQ+ILHQDD ++EE   VPDDETVNQ+IARTE E  +FQK+D ERR
Sbjct: 1610 MFDQKSTGSERQQFLQSILHQDDADDEEENEVPDDETVNQMIARTEGEFEIFQKLDLERR 1669

Query: 60   KGET------KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
            + E       K RL+E  ELPDW+VKDDDEVE   YEE+ +R      +GRGSRQRK
Sbjct: 1670 REEAKLGPNRKSRLLEEAELPDWLVKDDDEVERWTYEEDEDR-----FLGRGSRQRK 1721

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793843|ref|XP_624270.3| PREDICTED: ATP-dependent helicase brm [Apis mellifera]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 87/117 (74%), Gaps = 12/117 (10%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENE-VPDDETVNQLIARTEDELTLFQKMDAERR 59
            MFDQKSTGSER +FLQ+ILHQDD E+EE   VPDDETVNQ+IARTE E  +FQK+D ERR
Sbjct: 1675 MFDQKSTGSERQQFLQSILHQDDAEDEEENEVPDDETVNQMIARTEGEFEIFQKLDLERR 1734

Query: 60   KGET------KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
            + E       K RL+E  ELPDW+VKDDDEVE   YEE+ +R      +GRGSRQRK
Sbjct: 1735 REEAKLGPNRKSRLLEEAELPDWLVKDDDEVERWTYEEDEDR-----FLGRGSRQRK 1786

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022521|ref|XP_003695092.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent helicase brm-like [Apis florea]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 87/117 (74%), Gaps = 12/117 (10%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENE-VPDDETVNQLIARTEDELTLFQKMDAERR 59
            MFDQKSTGSER +FLQ+ILHQDD E+EE   VPDDETVNQ+IARTE E  +FQK+D ERR
Sbjct: 1676 MFDQKSTGSERQQFLQSILHQDDAEDEEENEVPDDETVNQMIARTEGEFEIFQKLDLERR 1735

Query: 60   KGET------KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
            + E       K RL+E  ELPDW+VKDDDEVE   YEE+ +R      +GRGSRQRK
Sbjct: 1736 REEAKLGPNRKSRLLEEAELPDWLVKDDDEVERWTYEEDEDR-----FLGRGSRQRK 1787

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312380716|gb|EFR26634.1| hypothetical protein AND_07156 [Anopheles darlingi]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 87/111 (78%), Gaps = 6/111 (5%)

Query: 1    MFDQKSTGSERHEFLQTILHQDDEEEEENE-VPDDETVNQLIARTEDELTLFQKMDAERR 59
            MFDQKSTGSER +FLQ+ILHQD+ +EEE   VPDDE +N +IAR++DEL LF+KMDAERR
Sbjct: 1142 MFDQKSTGSERQQFLQSILHQDEMDEEEENEVPDDEMINLMIARSDDELELFKKMDAERR 1201

Query: 60   KGETKPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRK 110
              E KPRL++  ELP+W+ KDD+EV+   YEEE       +++GRGSRQRK
Sbjct: 1202 AEEVKPRLLDEAELPEWLSKDDEEVDRWDYEEE-----SSSILGRGSRQRK 1247

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
FB|FBgn0000212	1638	brm "brahma" [Drosophila melan	0.954	0.064	0.487	7.2e-20
UNIPROTKB|H0YGM3	427	SMARCA4 "Transcription activat	0.954	0.248	0.439	1.4e-16
UNIPROTKB|F1S594	866	LOC100622433 "Uncharacterized	0.954	0.122	0.439	5.6e-16
UNIPROTKB|F1MJ46	1604	SMARCA4 "Transcription activat	0.954	0.066	0.439	1.3e-15
UNIPROTKB|A7Z019	1606	SMARCA4 "Transcription activat	0.954	0.066	0.439	1.3e-15
MGI|MGI:88192	1613	Smarca4 "SWI/SNF related, matr	0.954	0.065	0.439	1.3e-15
RGD|621728	1613	Smarca4 "SWI/SNF related, matr	0.954	0.065	0.439	1.3e-15
UNIPROTKB|E2RJ89	1614	SMARCA4 "Uncharacterized prote	0.954	0.065	0.439	1.3e-15
UNIPROTKB|G3V790	1614	Smarca4 "SWI/SNF related, matr	0.954	0.065	0.439	1.3e-15
UNIPROTKB|F1M6Y4	1618	Smarca4 "Transcription activat	0.954	0.065	0.439	1.3e-15

FB|FBgn0000212 brm "brahma" [Drosophila melanogaster (taxid:7227)]

 Score = 251 (93.4 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 57/117 (48%), Positives = 73/117 (62%)

Query:     1 MFDQKSTGSERHEFLQTILHQXXXXXXXXXXX-XXXTVNQLIARTEDELTLFQKMDAERR 59
             MFDQKSTGSER +FLQTILHQ                +N +IAR+E+E+ +F++MDAER+
Sbjct:  1251 MFDQKSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEIEIFKRMDAERK 1310

Query:    60 KG--ETKP---RLVEIKELPDWMVKDDDEVENSMYXXXXXXXXXXALMGRGSRQRKQ 111
             K   E  P   RL++  ELPDW+ KDDDEVE   Y           ++GRGSRQRK+
Sbjct:  1311 KEDEEIHPGRERLIDESELPDWLTKDDDEVERFHYQYDEDT-----ILGRGSRQRKE 1362

GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0016887 "ATPase activity" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=NAS

GO:0003713 "transcription coactivator activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0035060 "brahma complex" evidence=IDA;TAS

GO:0048477 "oogenesis" evidence=TAS

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IGI

GO:0035172 "hemocyte proliferation" evidence=TAS

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP

GO:0045742 "positive regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0070983 "dendrite guidance" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0043974 "histone H3-K27 acetylation" evidence=IMP

UNIPROTKB|H0YGM3 SMARCA4 "Transcription activator BRG1" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 51/116 (43%), Positives = 62/116 (53%)

Query:     1 MFDQKSTGSERHEFLQTILHQXXXXXXXXXXXXXXTVNQLIARTEDELTLFQKMDAERRK 60
             MFDQKS+  ER  FLQ IL                TVNQ+IAR E+E  LF +MD +RR+
Sbjct:   113 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 172

Query:    61 GET-----KPRLVEIKELPDWMVKDDDEVENSMYXXXXXXXXXXALMGRGSRQRKQ 111
              E      KPRL+E  ELP W++KDD EVE               + GRGSR RK+
Sbjct:   173 EEARNPKRKPRLMEEDELPSWIIKDDAEVER-----LTCEEEEEKMFGRGSRHRKE 223

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1S594 LOC100622433 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 211 (79.3 bits), Expect = 5.6e-16, P = 5.6e-16
 Identities = 51/116 (43%), Positives = 62/116 (53%)

Query:     1 MFDQKSTGSERHEFLQTILHQXXXXXXXXXXXXXXTVNQLIARTEDELTLFQKMDAERRK 60
             MFDQKS+  ER  FLQ IL                TVNQ+IAR E+E  LF +MD +RR+
Sbjct:   485 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 544

Query:    61 GET-----KPRLVEIKELPDWMVKDDDEVENSMYXXXXXXXXXXALMGRGSRQRKQ 111
              E      KPRL+E  ELP W++KDD EVE               + GRGSR RK+
Sbjct:   545 EEARNPKRKPRLMEEDELPSWIIKDDAEVER-----LTCEEEEEKMFGRGSRHRKE 595

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1MJ46 SMARCA4 "Transcription activator BRG1" [Bos taurus (taxid:9913)]

 Score = 211 (79.3 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 51/116 (43%), Positives = 62/116 (53%)

Query:     1 MFDQKSTGSERHEFLQTILHQXXXXXXXXXXXXXXTVNQLIARTEDELTLFQKMDAERRK 60
             MFDQKS+  ER  FLQ IL                TVNQ+IAR E+E  LF +MD +RR+
Sbjct:  1223 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 1282

Query:    61 GET-----KPRLVEIKELPDWMVKDDDEVENSMYXXXXXXXXXXALMGRGSRQRKQ 111
              E      KPRL+E  ELP W++KDD EVE               + GRGSR RK+
Sbjct:  1283 EEARNPKRKPRLMEEDELPSWIIKDDAEVER-----LTCEEEEEKMFGRGSRHRKE 1333

GO:0071565 "nBAF complex" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

GO:0060347 "heart trabecula formation" evidence=IEA

GO:0060318 "definitive erythrocyte differentiation" evidence=IEA

GO:0048730 "epidermis morphogenesis" evidence=IEA

GO:0048562 "embryonic organ morphogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0043388 "positive regulation of DNA binding" evidence=IEA

GO:0035887 "aortic smooth muscle cell differentiation" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0030902 "hindbrain development" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0010424 "DNA methylation on cytosine within a CG sequence" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007403 "glial cell fate determination" evidence=IEA

GO:0006346 "methylation-dependent chromatin silencing" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0005726 "perichromatin fibrils" evidence=IEA

GO:0005719 "nuclear euchromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0001835 "blastocyst hatching" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0000792 "heterochromatin" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

UNIPROTKB|A7Z019 SMARCA4 "Transcription activator BRG1" [Bos taurus (taxid:9913)]

 Score = 211 (79.3 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 51/116 (43%), Positives = 62/116 (53%)

Query:     1 MFDQKSTGSERHEFLQTILHQXXXXXXXXXXXXXXTVNQLIARTEDELTLFQKMDAERRK 60
             MFDQKS+  ER  FLQ IL                TVNQ+IAR E+E  LF +MD +RR+
Sbjct:  1225 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 1284

Query:    61 GET-----KPRLVEIKELPDWMVKDDDEVENSMYXXXXXXXXXXALMGRGSRQRKQ 111
              E      KPRL+E  ELP W++KDD EVE               + GRGSR RK+
Sbjct:  1285 EEARNPKRKPRLMEEDELPSWIIKDDAEVER-----LTCEEEEEKMFGRGSRHRKE 1335

GO:0071565 "nBAF complex" evidence=ISS

GO:0071564 "npBAF complex" evidence=ISS

GO:0060347 "heart trabecula formation" evidence=IEA

GO:0060318 "definitive erythrocyte differentiation" evidence=IEA

GO:0048730 "epidermis morphogenesis" evidence=IEA

GO:0048562 "embryonic organ morphogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0043388 "positive regulation of DNA binding" evidence=IEA

GO:0035887 "aortic smooth muscle cell differentiation" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0030902 "hindbrain development" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0010424 "DNA methylation on cytosine within a CG sequence" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007403 "glial cell fate determination" evidence=IEA

GO:0006346 "methylation-dependent chromatin silencing" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0005726 "perichromatin fibrils" evidence=IEA

GO:0005719 "nuclear euchromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0001835 "blastocyst hatching" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0000792 "heterochromatin" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

MGI|MGI:88192 Smarca4 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4" [Mus musculus (taxid:10090)]

 Score = 211 (79.3 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 51/116 (43%), Positives = 62/116 (53%)

Query:     1 MFDQKSTGSERHEFLQTILHQXXXXXXXXXXXXXXTVNQLIARTEDELTLFQKMDAERRK 60
             MFDQKS+  ER  FLQ IL                TVNQ+IAR E+E  LF +MD +RR+
Sbjct:  1233 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 1292

Query:    61 GET-----KPRLVEIKELPDWMVKDDDEVENSMYXXXXXXXXXXALMGRGSRQRKQ 111
              E      KPRL+E  ELP W++KDD EVE               + GRGSR RK+
Sbjct:  1293 EEARNPKRKPRLMEEDELPSWIIKDDAEVER-----LTCEEEEEKMFGRGSRHRKE 1343

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=ISO

GO:0000792 "heterochromatin" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=ISO

GO:0001570 "vasculogenesis" evidence=IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001832 "blastocyst growth" evidence=IMP

GO:0001835 "blastocyst hatching" evidence=IMP

GO:0001889 "liver development" evidence=IMP

GO:0002039 "p53 binding" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0003714 "transcription corepressor activity" evidence=ISO

GO:0004386 "helicase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005719 "nuclear euchromatin" evidence=IDA

GO:0005726 "perichromatin fibrils" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=TAS

GO:0006334 "nucleosome assembly" evidence=TAS

GO:0006337 "nucleosome disassembly" evidence=ISO

GO:0006338 "chromatin remodeling" evidence=ISO;IMP

GO:0006346 "methylation-dependent chromatin silencing" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IMP

GO:0007403 "glial cell fate determination" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0008094 "DNA-dependent ATPase activity" evidence=ISO

GO:0008134 "transcription factor binding" evidence=IPI

GO:0010424 "DNA methylation on cytosine within a CG sequence" evidence=IMP

GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS

GO:0016568 "chromatin modification" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0016887 "ATPase activity" evidence=IMP;TAS

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0022008 "neurogenesis" evidence=IDA

GO:0030198 "extracellular matrix organization" evidence=IMP

GO:0030216 "keratinocyte differentiation" evidence=IMP

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0030900 "forebrain development" evidence=IMP

GO:0030902 "hindbrain development" evidence=IMP

GO:0030957 "Tat protein binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IMP

GO:0035887 "aortic smooth muscle cell differentiation" evidence=IMP

GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO

GO:0043388 "positive regulation of DNA binding" evidence=IGI

GO:0043923 "positive regulation by host of viral transcription" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI;ISO;IMP

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0048562 "embryonic organ morphogenesis" evidence=IMP

GO:0048730 "epidermis morphogenesis" evidence=IMP

GO:0050681 "androgen receptor binding" evidence=ISO

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0060318 "definitive erythrocyte differentiation" evidence=IMP

GO:0060347 "heart trabecula formation" evidence=IGI

GO:0060766 "negative regulation of androgen receptor signaling pathway" evidence=ISO

GO:0070577 "histone acetyl-lysine binding" evidence=ISO

GO:0071564 "npBAF complex" evidence=ISO;IDA

GO:0071565 "nBAF complex" evidence=IDA

GO:0071778 "WINAC complex" evidence=ISO

RGD|621728 Smarca4 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4" [Rattus norvegicus (taxid:10116)]

 Score = 211 (79.3 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 51/116 (43%), Positives = 62/116 (53%)

Query:     1 MFDQKSTGSERHEFLQTILHQXXXXXXXXXXXXXXTVNQLIARTEDELTLFQKMDAERRK 60
             MFDQKS+  ER  FLQ IL                TVNQ+IAR E+E  LF +MD +RR+
Sbjct:  1233 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 1292

Query:    61 GET-----KPRLVEIKELPDWMVKDDDEVENSMYXXXXXXXXXXALMGRGSRQRKQ 111
              E      KPRL+E  ELP W++KDD EVE               + GRGSR RK+
Sbjct:  1293 EEARNPKRKPRLMEEDELPSWIIKDDAEVER-----LTCEEEEEKMFGRGSRHRKE 1343

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000790 "nuclear chromatin" evidence=ISO

GO:0000792 "heterochromatin" evidence=ISO

GO:0000902 "cell morphogenesis" evidence=ISO

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=ISO

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=ISO

GO:0001570 "vasculogenesis" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001832 "blastocyst growth" evidence=ISO

GO:0001835 "blastocyst hatching" evidence=ISO

GO:0001889 "liver development" evidence=ISO

GO:0002039 "p53 binding" evidence=ISO

GO:0003407 "neural retina development" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0003714 "transcription corepressor activity" evidence=ISO;ISS

GO:0004386 "helicase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005719 "nuclear euchromatin" evidence=ISO

GO:0005726 "perichromatin fibrils" evidence=ISO

GO:0006337 "nucleosome disassembly" evidence=ISO;IDA

GO:0006338 "chromatin remodeling" evidence=ISO

GO:0006346 "methylation-dependent chromatin silencing" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA;ISO

GO:0007403 "glial cell fate determination" evidence=ISO

GO:0007507 "heart development" evidence=ISO

GO:0008094 "DNA-dependent ATPase activity" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0010424 "DNA methylation on cytosine within a CG sequence" evidence=ISO

GO:0016514 "SWI/SNF complex" evidence=ISO;IDA

GO:0016887 "ATPase activity" evidence=ISO

GO:0019827 "stem cell maintenance" evidence=ISO

GO:0022008 "neurogenesis" evidence=ISO

GO:0030198 "extracellular matrix organization" evidence=ISO

GO:0030216 "keratinocyte differentiation" evidence=ISO

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0030900 "forebrain development" evidence=ISO

GO:0030902 "hindbrain development" evidence=ISO

GO:0030957 "Tat protein binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=IDA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=ISO

GO:0035887 "aortic smooth muscle cell differentiation" evidence=ISO

GO:0043044 "ATP-dependent chromatin remodeling" evidence=IDA

GO:0043388 "positive regulation of DNA binding" evidence=ISO

GO:0043923 "positive regulation by host of viral transcription" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0048562 "embryonic organ morphogenesis" evidence=ISO

GO:0048730 "epidermis morphogenesis" evidence=ISO

GO:0050681 "androgen receptor binding" evidence=ISO

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0060318 "definitive erythrocyte differentiation" evidence=ISO

GO:0060347 "heart trabecula formation" evidence=ISO

GO:0060766 "negative regulation of androgen receptor signaling pathway" evidence=ISO

GO:0070577 "histone acetyl-lysine binding" evidence=ISO

GO:0071564 "npBAF complex" evidence=ISO;ISS

GO:0071565 "nBAF complex" evidence=ISO;ISS

GO:0071778 "WINAC complex" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E2RJ89 SMARCA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 211 (79.3 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 51/116 (43%), Positives = 62/116 (53%)

Query:     1 MFDQKSTGSERHEFLQTILHQXXXXXXXXXXXXXXTVNQLIARTEDELTLFQKMDAERRK 60
             MFDQKS+  ER  FLQ IL                TVNQ+IAR E+E  LF +MD +RR+
Sbjct:  1233 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 1292

Query:    61 GET-----KPRLVEIKELPDWMVKDDDEVENSMYXXXXXXXXXXALMGRGSRQRKQ 111
              E      KPRL+E  ELP W++KDD EVE               + GRGSR RK+
Sbjct:  1293 EEARNPKRKPRLMEEDELPSWIIKDDAEVER-----LTCEEEEEKMFGRGSRHRKE 1343

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|G3V790 Smarca4 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 211 (79.3 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 51/116 (43%), Positives = 62/116 (53%)

Query:     1 MFDQKSTGSERHEFLQTILHQXXXXXXXXXXXXXXTVNQLIARTEDELTLFQKMDAERRK 60
             MFDQKS+  ER  FLQ IL                TVNQ+IAR E+E  LF +MD +RR+
Sbjct:  1233 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 1292

Query:    61 GET-----KPRLVEIKELPDWMVKDDDEVENSMYXXXXXXXXXXALMGRGSRQRKQ 111
              E      KPRL+E  ELP W++KDD EVE               + GRGSR RK+
Sbjct:  1293 EEARNPKRKPRLMEEDELPSWIIKDDAEVER-----LTCEEEEEKMFGRGSRHRKE 1343

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000792 "heterochromatin" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0001835 "blastocyst hatching" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005719 "nuclear euchromatin" evidence=IEA

GO:0005726 "perichromatin fibrils" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0006346 "methylation-dependent chromatin silencing" evidence=IEA

GO:0007403 "glial cell fate determination" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0010424 "DNA methylation on cytosine within a CG sequence" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030902 "hindbrain development" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0035887 "aortic smooth muscle cell differentiation" evidence=IEA

GO:0043388 "positive regulation of DNA binding" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048562 "embryonic organ morphogenesis" evidence=IEA

GO:0048730 "epidermis morphogenesis" evidence=IEA

GO:0060318 "definitive erythrocyte differentiation" evidence=IEA

GO:0060347 "heart trabecula formation" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

GO:0071565 "nBAF complex" evidence=IEA

UNIPROTKB|F1M6Y4 Smarca4 "Transcription activator BRG1" [Rattus norvegicus (taxid:10116)]

 Score = 211 (79.3 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 51/116 (43%), Positives = 62/116 (53%)

Query:     1 MFDQKSTGSERHEFLQTILHQXXXXXXXXXXXXXXTVNQLIARTEDELTLFQKMDAERRK 60
             MFDQKS+  ER  FLQ IL                TVNQ+IAR E+E  LF +MD +RR+
Sbjct:  1233 MFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRR 1292

Query:    61 GET-----KPRLVEIKELPDWMVKDDDEVENSMYXXXXXXXXXXALMGRGSRQRKQ 111
              E      KPRL+E  ELP W++KDD EVE               + GRGSR RK+
Sbjct:  1293 EEARNPKRKPRLMEEDELPSWIIKDDAEVER-----LTCEEEEEKMFGRGSRHRKE 1343

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000792 "heterochromatin" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0001835 "blastocyst hatching" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005719 "nuclear euchromatin" evidence=IEA

GO:0005726 "perichromatin fibrils" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0006346 "methylation-dependent chromatin silencing" evidence=IEA

GO:0007403 "glial cell fate determination" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0010424 "DNA methylation on cytosine within a CG sequence" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030902 "hindbrain development" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0035887 "aortic smooth muscle cell differentiation" evidence=IEA

GO:0043388 "positive regulation of DNA binding" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048562 "embryonic organ morphogenesis" evidence=IEA

GO:0048730 "epidermis morphogenesis" evidence=IEA

GO:0060318 "definitive erythrocyte differentiation" evidence=IEA

GO:0060347 "heart trabecula formation" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

GO:0071565 "nBAF complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3TKT4	SMCA4_MOUSE	3, ., 6, ., 4, ., -	0.5565	0.9459	0.0650	yes	N/A
P25439	BRM_DROME	3, ., 6, ., 4, ., 1, 2	0.6120	0.9459	0.0641	yes	N/A
Q8K1P7	SMCA4_RAT	3, ., 6, ., 4, ., -	0.5565	0.9459	0.0650	yes	N/A
A7Z019	SMCA4_BOVIN	3, ., 6, ., 4, ., -	0.5565	0.9459	0.0653	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG0386|consensus	1157		99.89
PF14619	74	SnAC: Snf2-ATP coupling, chromatin remodelling com	99.09

>KOG0386|consensus

Probab=99.89  E-value=1.4e-23  Score=190.41  Aligned_cols=105  Identities=54%  Similarity=0.826  Sum_probs=91.6

Q ss_pred             CCCCCCCHHHHHHHHHHHhccCcccccccCCCCHHHHHHHhcCChHHHHHHHHHhHHHhcCCC----CCCCCCCCccchh
Q psy9690           1 MFDQKSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRKGET----KPRLVEIKELPDW   76 (111)
Q Consensus         1 kFDnkST~eER~a~L~~LLe~~~~~~~~~e~~dDeeLN~~lARseeE~~lF~~mD~ER~~~e~----~~RL~~~~ELP~~   76 (111)
                      +|||+||+++|++||++||+.+++ ++++++|||++||+|||||++||++|.+||.+|.+++.    +||||.++|+|+|
T Consensus       863 ~fdn~st~~eR~~~Le~~l~~~~~-~~~~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~~~k~rl~ee~e~p~~  941 (1157)
T KOG0386|consen  863 KFDNKSTAEEREMFLEQLLEMEGD-EEEEEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQEKKPRLVEEAELPAD  941 (1157)
T ss_pred             cccCCCcHHHHHHHHHHHHhCCCc-cccccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhccccchhhhhhhcHHH
Confidence            699999999999999999999984 45699999999999999999999999999999999665    7899999999999


Q ss_pred             hhcCchHHhhhhHHHHHHHHHHHhhccCccccccC
Q psy9690          77 MVKDDDEVENSMYEEEREREKEEALMGRGSRQRKQ  111 (111)
Q Consensus        77 ~~~d~~~~~~~~~~~e~~~e~~~~~~GRG~R~Rk~  111 (111)
                      +......++.+..+++     ....+|||+|.||+
T Consensus       942 i~~~~~~~~~~~~~~~-----~~~~~~rg~r~Rke  971 (1157)
T KOG0386|consen  942 IYKRDQGVERLSEEEE-----EEKILGRGRRARKE  971 (1157)
T ss_pred             HHhcchhhhhhhhhhh-----hhccccccccccce
Confidence            9888887766555433     33448999999985

>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex

Probab=99.09  E-value=3.5e-11  Score=80.10  Aligned_cols=45  Identities=44%  Similarity=0.686  Sum_probs=31.7

Q ss_pred             CCCCCCCCccchhhhcCchHHhhhhHHHHHHHHHHHhhccCccccccC
Q psy9690          64 KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRKQ  111 (111)
Q Consensus        64 ~~RL~~~~ELP~~~~~d~~~~~~~~~~~e~~~e~~~~~~GRG~R~Rk~  111 (111)
                      +||||+++|||+||+.++..+..  .. ..+.......||||+|+||.
T Consensus        17 p~RLm~e~ELPe~~~~d~~~~~~--~~-~~e~~~~~~~~grG~R~RK~   61 (74)
T PF14619_consen   17 PSRLMEESELPEWYREDIEEELE--KE-EEEEEAETNEYGRGKRERKE   61 (74)
T ss_pred             CccccchhhchHHHHhcchhhhh--hh-hhhhccchhhcccccccccc
Confidence            56999999999999999987621  11 10111223568999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00