Psyllid ID: psy969

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MGRPRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELEAL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHHHcccccccccccEEEccccHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEcEcccccHHHHHHHHHHHHHHHcccccccccEcEEEccHHHHHHHHcHcc
Coil and Loop (DISEMBL)
mgrprkvafkgsnfrtlhgrgpdstsygnvcntCGIIMCSAIKHFHKLsgkkiglkpaggistfeDSVRWIYLVLIMLgpdwlnkdLFRIGASSLLNNILQELEAL
Flexible Loop (DISEMBL)
mgrprkvafkgsnfrtlhgrgpdstsygNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELEAL
Low Complexity Region (SEG)
MGRPRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELEAL
Disordered region (IsUnstruct)
************************TSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL******
Disordered Region (DISOPRED)
**RPRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELEA*
Disordered Region (DISEMBL)
********FKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELEAL
Disordered Region (DISPRO)
MGRPRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELEAL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRPRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELEAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q19264	303	Putative deoxyribose-phos	yes	N/A	0.707	0.247	0.506	3e-16
Q91YP3	318	Putative deoxyribose-phos	yes	N/A	0.896	0.298	0.424	1e-13
Q9Y315	318	Putative deoxyribose-phos	yes	N/A	0.896	0.298	0.414	3e-13
Q3T0V9	318	Putative deoxyribose-phos	yes	N/A	0.896	0.298	0.383	3e-12
Q8UJ09	259	Deoxyribose-phosphate ald	no	N/A	0.849	0.347	0.346	2e-08
B4EWA4	259	Deoxyribose-phosphate ald	yes	N/A	0.509	0.208	0.444	7e-08
C5BHJ2	259	Deoxyribose-phosphate ald	yes	N/A	0.811	0.332	0.361	8e-08
Q6LUH4	257	Deoxyribose-phosphate ald	yes	N/A	0.811	0.334	0.361	2e-07
B2VH50	259	Deoxyribose-phosphate ald	yes	N/A	0.471	0.193	0.46	3e-07
A8H728	257	Deoxyribose-phosphate ald	yes	N/A	0.5	0.206	0.452	7e-07

>sp|Q19264|DEOC_CAEEL Putative deoxyribose-phosphate aldolase OS=Caenorhabditis elegans GN=F09E5.3 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 55/75 (73%)

Query: 29  NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 88
           N       +MC+AIK +H+L+GKK+G KPAGGI T ++++ ++ LV  +LG +WLN  LF
Sbjct: 229 NATLEVAYVMCTAIKRWHELTGKKVGFKPAGGIKTVDEALSYVALVKDILGDEWLNPHLF 288

Query: 89  RIGASSLLNNILQEL 103
           RIGASSLL++ L+ L
Sbjct: 289 RIGASSLLDDCLKGL 303

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.
Caenorhabditis elegans (taxid: 6239)
EC: 4EC: .EC: 1EC: .EC: 2EC: .EC: 4

>sp|Q91YP3|DEOC_MOUSE Putative deoxyribose-phosphate aldolase OS=Mus musculus GN=Dera PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 58/99 (58%), Gaps = 4/99 (4%)

Query: 9   FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
           +K S    + G     TS G    N      I+M  AI+ F   +G K+G KPAGGI T 
Sbjct: 203 YKASLVAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFFWKTGNKVGFKPAGGIRTA 262

Query: 65  EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
           ++S+ W+ LV   LG +WL  DLFRIGASSLL++I +++
Sbjct: 263 KESLAWLSLVKEELGDEWLTPDLFRIGASSLLSDIERQI 301

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q9Y315|DEOC_HUMAN Putative deoxyribose-phosphate aldolase OS=Homo sapiens GN=DERA PE=1 SV=2

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 4/99 (4%)

Query: 9   FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
           +K S    + G     TS G    N      I+M  AI+ F   +G KIG KPAGGI + 
Sbjct: 203 YKASMIAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFFWKTGNKIGFKPAGGIRSA 262

Query: 65  EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
           +DS+ W+ LV   LG +WL  +LFRIGAS+LL++I +++
Sbjct: 263 KDSLAWLSLVKEELGDEWLKPELFRIGASTLLSDIERQI 301

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q3T0V9|DEOC_BOVIN Putative deoxyribose-phosphate aldolase OS=Bos taurus GN=DERA PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 4/99 (4%)

Query: 9   FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
           +K S    + G     TS G    N      I+M  AI+ F   +G K+G KPAGGI + 
Sbjct: 203 YKASMIAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFFWKTGNKVGFKPAGGIRSA 262

Query: 65  EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
           +DS+ W+ L+   LG +W+  +LFRIGAS+LL +I +++
Sbjct: 263 KDSLVWLSLIKEELGDEWMKPELFRIGASTLLADIERQI 301

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q8UJ09|DEOC_AGRT5 Deoxyribose-phosphate aldolase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=deoC PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 10  KGSNFRTLHGRGPDSTSYGNVCNTCGI----IMCSAIKHFHKLSGKKIGLKPAGGISTFE 65
           + S      G     TS G V     +    IM  AI+     S KK+G KPAGGI T E
Sbjct: 154 RASEIAIAEGADFIKTSTGKVAVNATLEAADIMLQAIRD----SKKKVGFKPAGGIGTVE 209

Query: 66  DSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
           D+  ++ L   ++ P+W     FR GAS +L+++L  L
Sbjct: 210 DATLYLRLAETIMAPNWAMPSTFRFGASGVLDDVLNVL 247

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.

Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|B4EWA4|DEOC_PROMH Deoxyribose-phosphate aldolase OS=Proteus mirabilis (strain HI4320) GN=deoC PE=3 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 38/54 (70%)

Query: 50  GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
           GK++G KPAGG+ T E++ +++ L   ++G +W++   FR GASSLL N+L  L
Sbjct: 195 GKEVGFKPAGGVRTAEEAAQYLALANRIMGDNWVDARHFRFGASSLLGNLLATL 248

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.

Proteus mirabilis (strain HI4320) (taxid: 529507)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|C5BHJ2|DEOC_EDWI9 Deoxyribose-phosphate aldolase OS=Edwardsiella ictaluri (strain 93-146) GN=deoC PE=3 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 8/94 (8%)

Query: 11  GSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVR 69
           G++F +T  G+ P      N       +M S I+       K++G KPAGG+ T ED+ +
Sbjct: 162 GADFIKTSTGKVP-----VNATLESAELMMSVIRDMG--VAKRVGFKPAGGVRTAEDAAQ 214

Query: 70  WIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
           ++ L   +LG  W +   FR GASSLL ++LQ L
Sbjct: 215 YLALADRLLGEGWADSRHFRFGASSLLASLLQTL 248

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.

Edwardsiella ictaluri (strain 93-146) (taxid: 634503)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q6LUH4|DEOC_PHOPR Deoxyribose-phosphate aldolase OS=Photobacterium profundum GN=deoC PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 11  GSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVR 69
           G++F +T  G+ P      N       IM + IK       K +G KPAGG+ T ED+  
Sbjct: 160 GADFIKTSTGKVP-----VNATPEAAEIMLTVIKDMD--VAKTVGFKPAGGVRTAEDAQA 212

Query: 70  WIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
           ++ +   +LG DW +   +R GASSLL N+L  L
Sbjct: 213 FLAMADRILGGDWADNMHYRFGASSLLANLLHTL 246

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.

Photobacterium profundum (taxid: 74109)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|B2VH50|DEOC_ERWT9 Deoxyribose-phosphate aldolase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=deoC PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query: 51  KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
           K++G KPAGG+ + +D+  ++ L   +LGPDW +   FR GASSLL ++L
Sbjct: 196 KQVGFKPAGGVRSADDAALYLKLADNILGPDWADARHFRFGASSLLASLL 245

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.

Erwinia tasmaniensis (strain DSM 17950 / Et1/99) (taxid: 338565)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|A8H728|DEOC_SHEPA Deoxyribose-phosphate aldolase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=deoC PE=3 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 32/53 (60%)

Query: 52  KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
           K+G KPAGG+   E +  ++ +   +LG DW     FR GASSLL N+L  LE
Sbjct: 194 KVGFKPAGGVKDAEAAAEFLGVAARLLGDDWATPATFRFGASSLLTNLLHTLE 246

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.

Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) (taxid: 398579)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
389612225	134	deoxyribose-phosphate aldolase [Papilio	0.971	0.768	0.453	5e-18
156542751	304	PREDICTED: putative deoxyribose-phosphat	0.735	0.256	0.538	1e-17
340720128	293	PREDICTED: putative deoxyribose-phosphat	0.915	0.331	0.425	8e-17
350408270	293	PREDICTED: putative deoxyribose-phosphat	0.915	0.331	0.425	2e-16
332017146	372	Putative deoxyribose-phosphate aldolase	0.924	0.263	0.470	3e-16
328786659	293	PREDICTED: putative deoxyribose-phosphat	0.924	0.334	0.421	5e-16
307213992	309	Putative deoxyribose-phosphate aldolase	0.924	0.317	0.460	2e-15
383863182	293	PREDICTED: putative deoxyribose-phosphat	0.632	0.228	0.537	6e-15
242247513	327	deoxyribose-phosphate aldolase-like [Acy	0.830	0.269	0.446	7e-15
255013150	312	deoxyribose-phosphate aldolase [Bacteroi	0.849	0.288	0.437	9e-15

>gi|389612225|dbj|BAM19626.1| deoxyribose-phosphate aldolase [Papilio xuthus]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 5/108 (4%)

Query: 1   MGRPRKVAFKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLK 56
           +G  R V +K S    L G     TS G    N     G++MC AI++F++L+G K+GLK
Sbjct: 19  LGSYRNV-YKASLISMLAGADFIKTSTGKEVVNATLPVGLVMCRAIRYFYQLTGVKVGLK 77

Query: 57  PAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELE 104
           PAGGI T  D++ W+ LV   LGP+W+  DLFRIGASSLL+ +++ L+
Sbjct: 78  PAGGIKTARDAINWLVLVYTELGPEWITPDLFRIGASSLLDVVVKSLD 125

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542751|ref|XP_001599908.1| PREDICTED: putative deoxyribose-phosphate aldolase-like [Nasonia vitripennis]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 57/78 (73%)

Query: 29  NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLF 88
           N     G++M  AI+ +H +SGKKIG KPAGGI T ED V+W+ L+   LG DWL KDLF
Sbjct: 225 NATLPVGVVMSKAIRDYHAVSGKKIGFKPAGGIKTSEDIVQWLTLIKEKLGNDWLTKDLF 284

Query: 89  RIGASSLLNNILQELEAL 106
           RIGASS+L++I++ ++ L
Sbjct: 285 RIGASSVLDDIIKTVDTL 302

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720128|ref|XP_003398495.1| PREDICTED: putative deoxyribose-phosphate aldolase-like [Bombus terrestris]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 68/101 (67%), Gaps = 4/101 (3%)

Query: 9   FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
           +K S    + G     TS G    N   + G+IMC AIK +++ + +K+GLKPAGGI   
Sbjct: 192 YKSSMIAMMAGADFIKTSTGKEAINATLSAGVIMCQAIKDYYESTQRKVGLKPAGGIKVS 251

Query: 65  EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELEA 105
           ++++ W+ LV + LG +WL+KDLFRIGAS+LL+NI++ +++
Sbjct: 252 QEALEWMMLVQMELGEEWLSKDLFRIGASNLLDNIVEAIQS 292

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408270|ref|XP_003488356.1| PREDICTED: putative deoxyribose-phosphate aldolase-like [Bombus impatiens]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 68/101 (67%), Gaps = 4/101 (3%)

Query: 9   FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
           +K S    + G     TS G    N   + G+IMC AIK +++ + +K+GLKPAGGI   
Sbjct: 192 YKSSMIAMMAGADFIKTSTGKEAINATLSAGVIMCQAIKDYYESTQRKVGLKPAGGIKDP 251

Query: 65  EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELEA 105
           ++++ W+ LV + LG +WL+KDLFRIGAS+LL+NI++ +++
Sbjct: 252 QEALEWMMLVEMELGEEWLSKDLFRIGASNLLDNIVEAIQS 292

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017146|gb|EGI57945.1| Putative deoxyribose-phosphate aldolase [Acromyrmex echinatior]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 58/102 (56%), Gaps = 4/102 (3%)

Query: 6   KVAFKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGI 61
           K  +K S      G     TS G    N     GI+MC AIK F +L+G K G KPAGGI
Sbjct: 209 KDVYKASMVALFAGADFIKTSTGKDLVNATLQAGIVMCRAIKEFQRLAGIKTGFKPAGGI 268

Query: 62  STFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
            T +D++ W+ L+   LG DWL  D FRIGASSLL NI  E+
Sbjct: 269 KTAQDALEWMVLIKEELGNDWLTSDYFRIGASSLLENISTEI 310

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786659|ref|XP_624372.2| PREDICTED: putative deoxyribose-phosphate aldolase-like [Apis mellifera]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 66/102 (64%), Gaps = 4/102 (3%)

Query: 8   AFKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIST 63
            +K S    + G     TS G    N     GI+MC AIK +++ + KK+GLKPAGGI  
Sbjct: 191 VYKASMIAMMAGADFIKTSTGKEAINATLPVGIVMCRAIKDYYESTQKKVGLKPAGGIKA 250

Query: 64  FEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQELEA 105
            ++++ W+ LV + LG +WL KD FRIG+S+LL+NI++E+++
Sbjct: 251 PQEALEWMMLVQMELGEEWLCKDFFRIGSSNLLDNIIEEIQS 292

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213992|gb|EFN89199.1| Putative deoxyribose-phosphate aldolase [Harpegnathos saltator]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 61/102 (59%), Gaps = 4/102 (3%)

Query: 6   KVAFKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGI 61
           K  +K S    + G     TS G    N     G++MC A+K F  L+GK IG+KPAGGI
Sbjct: 199 KDVYKASMVAMMAGADFIKTSTGKEAINATLPVGVVMCRAVKDFADLTGKMIGIKPAGGI 258

Query: 62  STFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
            T +D++ W+ L+   LG  WLNK  FRIGASSLL NI +E+
Sbjct: 259 KTAQDALEWMVLIKEELGSAWLNKTNFRIGASSLLGNIEKEI 300

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863182|ref|XP_003707061.1| PREDICTED: putative deoxyribose-phosphate aldolase-like [Megachile rotundata]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 53/67 (79%)

Query: 34  CGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93
            GI+MC AIK++++ + KK+G KPAGGI T ++++ W+ LV   LG +WL K+LFRIGAS
Sbjct: 221 VGIVMCHAIKNYYESTNKKVGFKPAGGIKTSQEALEWMMLVQTELGEEWLTKNLFRIGAS 280

Query: 94  SLLNNIL 100
           SLL++I+
Sbjct: 281 SLLDDIV 287

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242247513|ref|NP_001156293.1| deoxyribose-phosphate aldolase-like [Acyrthosiphon pisum] gi|239789796|dbj|BAH71498.1| ACYPI009138 [Acyrthosiphon pisum]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 6/94 (6%)

Query: 11  GSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVR 69
           GS+F +T  G+  ++ +  +     G+IMC AIK +H  +G K+G+KPAGGI   E ++ 
Sbjct: 228 GSDFIKTSTGKEAENATLSH-----GVIMCQAIKKYHNATGYKVGIKPAGGIKFNEQALS 282

Query: 70  WIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
           W+ LV   LG DWL   LFRIGASSLL ++++ L
Sbjct: 283 WLILVKNQLGNDWLKASLFRIGASSLLEDVVKRL 316

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255013150|ref|ZP_05285276.1| deoxyribose-phosphate aldolase [Bacteroides sp. 2_1_7] gi|410102612|ref|ZP_11297538.1| deoxyribose-phosphate aldolase [Parabacteroides sp. D25] gi|409238684|gb|EKN31475.1| deoxyribose-phosphate aldolase [Parabacteroides sp. D25]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 62/96 (64%), Gaps = 6/96 (6%)

Query: 9   FKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDS 67
           + G++F +T  G+G     Y          MC AIK +H ++G K+G+K +GG+ T ED+
Sbjct: 220 YSGADFIKTSTGKG-----YPGATFEAAYTMCKAIKTYHSITGNKVGIKISGGVRTAEDA 274

Query: 68  VRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
           VR+  +V  +LG +WLNKDLFRIGASSL+ +I + L
Sbjct: 275 VRYYTIVKEILGDEWLNKDLFRIGASSLVGDIEKRL 310

Source: Bacteroides sp. 2_1_7

Species: Bacteroides sp. 2_1_7

Genus: Bacteroides

Family: Bacteroidaceae

Order: Bacteroidales

Class: Bacteroidia

Phylum: Bacteroidetes

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
WB|WBGene00017283	303	F09E5.3 [Caenorhabditis elegan	0.632	0.221	0.552	2.9e-16
UNIPROTKB|F1NT21	318	DERA "Uncharacterized protein"	0.896	0.298	0.404	1.1e-13
MGI|MGI:1913762	318	Dera "2-deoxyribose-5-phosphat	0.896	0.298	0.424	2.3e-13
UNIPROTKB|G3V158	230	DERA "Putative deoxyribose-pho	0.896	0.413	0.414	2.7e-13
ZFIN|ZDB-GENE-041010-200	318	dera "2-deoxyribose-5-phosphat	0.830	0.276	0.425	3e-13
RGD|1589836	308	Dera "deoxyribose-phosphate al	0.896	0.308	0.424	3.4e-13
UNIPROTKB|E9PPM8	275	DERA "Putative deoxyribose-pho	0.849	0.327	0.406	5.4e-13
UNIPROTKB|Q9Y315	318	DERA "Putative deoxyribose-pho	0.896	0.298	0.414	6.6e-13
UNIPROTKB|F1PPB6	318	DERA "Uncharacterized protein"	0.896	0.298	0.404	8.5e-13
UNIPROTKB|F1SQY2	318	DERA "Uncharacterized protein"	0.896	0.298	0.404	1.9e-12

WB|WBGene00017283 F09E5.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 37/67 (55%), Positives = 54/67 (80%)

Query:    37 IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 96
             +MC+AIK +H+L+GKK+G KPAGGI T ++++ ++ LV  +LG +WLN  LFRIGASSLL
Sbjct:   237 VMCTAIKRWHELTGKKVGFKPAGGIKTVDEALSYVALVKDILGDEWLNPHLFRIGASSLL 296

Query:    97 NNILQEL 103
             ++ L+ L
Sbjct:   297 DDCLKGL 303

GO:0016829 "lyase activity" evidence=IEA

GO:0004139 "deoxyribose-phosphate aldolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009264 "deoxyribonucleotide catabolic process" evidence=IEA

UNIPROTKB|F1NT21 DERA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 181 (68.8 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 40/99 (40%), Positives = 59/99 (59%)

Query:     9 FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
             +K S    + G     TS G    N     G++M  AIK F+  +G K+G KPAGGI T 
Sbjct:   203 YKASMIAMMAGSDFIKTSTGKEVENATLPVGVVMMRAIKEFYWQTGFKVGFKPAGGIRTA 262

Query:    65 EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
             ++++ W+ LV   LG +WL  +LFR+GASSLL +I +++
Sbjct:   263 KEAITWLMLVKEELGVEWLKPELFRLGASSLLEDIEKQI 301

GO:0004139 "deoxyribose-phosphate aldolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009264 "deoxyribonucleotide catabolic process" evidence=IEA

GO:0046121 "deoxyribonucleoside catabolic process" evidence=IEA

MGI|MGI:1913762 Dera "2-deoxyribose-5-phosphate aldolase homolog (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 178 (67.7 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 42/99 (42%), Positives = 58/99 (58%)

Query:     9 FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
             +K S    + G     TS G    N      I+M  AI+ F   +G K+G KPAGGI T 
Sbjct:   203 YKASLVAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFFWKTGNKVGFKPAGGIRTA 262

Query:    65 EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
             ++S+ W+ LV   LG +WL  DLFRIGASSLL++I +++
Sbjct:   263 KESLAWLSLVKEELGDEWLTPDLFRIGASSLLSDIERQI 301

GO:0003824 "catalytic activity" evidence=IEA

GO:0004139 "deoxyribose-phosphate aldolase activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0009264 "deoxyribonucleotide catabolic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0046121 "deoxyribonucleoside catabolic process" evidence=ISO

UNIPROTKB|G3V158 DERA "Putative deoxyribose-phosphate aldolase" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 41/99 (41%), Positives = 58/99 (58%)

Query:     9 FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
             +K S    + G     TS G    N      I+M  AI+ F   +G KIG KPAGGI + 
Sbjct:   115 YKASMIAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFFWKTGNKIGFKPAGGIRSA 174

Query:    65 EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
             +DS+ W+ LV   LG +WL  +LFRIGAS+LL++I +++
Sbjct:   175 KDSLAWLSLVKEELGDEWLKPELFRIGASTLLSDIERQI 213

GO:0004139 "deoxyribose-phosphate aldolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009264 "deoxyribonucleotide catabolic process" evidence=IEA

ZFIN|ZDB-GENE-041010-200 dera "2-deoxyribose-5-phosphate aldolase homolog (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 40/94 (42%), Positives = 60/94 (63%)

Query:    11 GSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVR 69
             GS+F +T  G+   + +Y        I+M  AI+ ++  +G K+G KPAGGI T ++SV 
Sbjct:   213 GSDFIKTSTGKESVNATY-----PVAIVMVRAIRDYYLKTGHKVGFKPAGGIRTAQESVV 267

Query:    70 WIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
             W+ L+   LG DWLN  LFR+GASSLL +I +++
Sbjct:   268 WLTLMKEELGDDWLNPHLFRLGASSLLADIERQI 301

GO:0003824 "catalytic activity" evidence=IEA

GO:0009264 "deoxyribonucleotide catabolic process" evidence=IEA

GO:0004139 "deoxyribose-phosphate aldolase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|1589836 Dera "deoxyribose-phosphate aldolase (putative)" [Rattus norvegicus (taxid:10116)]

 Score = 176 (67.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 42/99 (42%), Positives = 58/99 (58%)

Query:     9 FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
             +K S    + G     TS G    N      I+M  AI+ F   +G K+G KPAGGI T 
Sbjct:   193 YKASLVAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFFWKTGNKVGFKPAGGIRTA 252

Query:    65 EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
             ++S+ W+ LV   LG +WL  DLFRIGASSLL++I +++
Sbjct:   253 KESLVWLSLVKEELGDEWLTPDLFRIGASSLLSDIERQI 291

GO:0003674 "molecular_function" evidence=ND

GO:0004139 "deoxyribose-phosphate aldolase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009264 "deoxyribonucleotide catabolic process" evidence=IEA

GO:0046121 "deoxyribonucleoside catabolic process" evidence=IEA;ISO

UNIPROTKB|E9PPM8 DERA "Putative deoxyribose-phosphate aldolase" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 5.4e-13, P = 5.4e-13
 Identities = 39/96 (40%), Positives = 62/96 (64%)

Query:     9 FKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDS 67
             ++GS+F +T  G+   + ++        I+M  AI+ F   +G KIG KPAGGI + +DS
Sbjct:   168 WEGSDFIKTSTGKETVNATF-----PVAIVMLRAIRDFFWKTGNKIGFKPAGGIRSAKDS 222

Query:    68 VRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
             + W+ LV   LG +WL  +LFRIGAS+LL++I +++
Sbjct:   223 LAWLSLVKEELGDEWLKPELFRIGASTLLSDIERQI 258

GO:0004139 "deoxyribose-phosphate aldolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009264 "deoxyribonucleotide catabolic process" evidence=IEA

UNIPROTKB|Q9Y315 DERA "Putative deoxyribose-phosphate aldolase" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 6.6e-13, P = 6.6e-13
 Identities = 41/99 (41%), Positives = 58/99 (58%)

Query:     9 FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
             +K S    + G     TS G    N      I+M  AI+ F   +G KIG KPAGGI + 
Sbjct:   203 YKASMIAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFFWKTGNKIGFKPAGGIRSA 262

Query:    65 EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
             +DS+ W+ LV   LG +WL  +LFRIGAS+LL++I +++
Sbjct:   263 KDSLAWLSLVKEELGDEWLKPELFRIGASTLLSDIERQI 301

GO:0005737 "cytoplasm" evidence=IEA

GO:0009264 "deoxyribonucleotide catabolic process" evidence=IEA

GO:0046386 "deoxyribose phosphate catabolic process" evidence=IEA

GO:0004139 "deoxyribose-phosphate aldolase activity" evidence=IDA

GO:0046121 "deoxyribonucleoside catabolic process" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1PPB6 DERA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 173 (66.0 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 40/99 (40%), Positives = 58/99 (58%)

Query:     9 FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
             +K S    + G     TS G    N      I+M  AI+ F   +G KIG KPAGGI + 
Sbjct:   203 YKASMIAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFFWKTGNKIGFKPAGGIRSA 262

Query:    65 EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
             +DS+ W+ L+   LG +WL  +LFRIGAS+LL++I +++
Sbjct:   263 KDSLAWLSLIKEELGDEWLTPELFRIGASTLLSDIERQI 301

GO:0046121 "deoxyribonucleoside catabolic process" evidence=IEA

GO:0009264 "deoxyribonucleotide catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004139 "deoxyribose-phosphate aldolase activity" evidence=IEA

UNIPROTKB|F1SQY2 DERA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 170 (64.9 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 40/99 (40%), Positives = 57/99 (57%)

Query:     9 FKGSNFRTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF 64
             +K S    + G     TS G    N      I+M  AI+ F   +G KIG KPAGGI + 
Sbjct:   203 YKASMIAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFFWKTGNKIGFKPAGGIRSA 262

Query:    65 EDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
             +DS+ W+ L+   LG +WL  +LFRIGAS+LL +I +++
Sbjct:   263 KDSLAWLSLIKEELGDEWLKPELFRIGASTLLADIERQI 301

GO:0046121 "deoxyribonucleoside catabolic process" evidence=IEA

GO:0009264 "deoxyribonucleotide catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004139 "deoxyribose-phosphate aldolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q19264	DEOC_CAEEL	4, ., 1, ., 2, ., 4	0.5066	0.7075	0.2475	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	106
PRK05283	257	PRK05283, PRK05283, deoxyribose-phosphate aldolase	2e-15
COG0274	228	COG0274, DeoC, Deoxyribose-phosphate aldolase [Nuc	5e-08
cd00959	203	cd00959, DeoC, 2-deoxyribose-5-phosphate aldolase	2e-06
PRK00507	221	PRK00507, PRK00507, deoxyribose-phosphate aldolase	8e-05
cd00945	201	cd00945, Aldolase_Class_I, Class I aldolases	0.001

>gnl|CDD|235387 PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional

 Score = 68.8 bits (169), Expect = 2e-15
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 37  IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 96
           IM   I+       K +G KPAGG+ T ED+ +++ L   +LG DW +   FR GASSLL
Sbjct: 182 IMLEVIRD--MGVAKTVGFKPAGGVRTAEDAAQYLALADEILGADWADARHFRFGASSLL 239

Query: 97  NNILQELE 104
            ++L+ L 
Sbjct: 240 ASLLKTLG 247

Length = 257

>gnl|CDD|223351 COG0274, DeoC, Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 13/66 (19%)

Query: 41  AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
            +K   +  G ++G+K +GGI T ED+        I  G         RIG SS +  IL
Sbjct: 172 DVKLMKETVGGRVGVKASGGIRTAEDAKAM-----IEAG-------ATRIGTSSGV-AIL 218

Query: 101 QELEAL 106
           + LE L
Sbjct: 219 EGLEHL 224

Length = 228

>gnl|CDD|188646 cd00959, DeoC, 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 12/53 (22%)

Query: 41  AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93
            +K   +  G ++G+K AGGI T ED++       I  G         RIG S
Sbjct: 163 DVKLMKEAVGGRVGVKAAGGIRTLEDALAM-----IEAG-------ATRIGTS 203

2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. Length = 203

>gnl|CDD|234784 PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional

 Score = 39.4 bits (93), Expect = 8e-05
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 13/65 (20%)

Query: 41  AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
            +K   +  G ++G+K +GGI T ED++      +I  G         R+G S+ +  IL
Sbjct: 168 DVKLMRETVGPRVGVKASGGIRTLEDALA-----MIEAGAT-------RLGTSAGV-AIL 214

Query: 101 QELEA 105
           + LE 
Sbjct: 215 KGLEK 219

Length = 221

>gnl|CDD|188634 cd00945, Aldolase_Class_I, Class I aldolases

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 41  AIKHFHKLSGKKIGLKPAGGISTFEDSVRWI 71
            +K   +  G ++G+K AGGI T ED++  I
Sbjct: 161 DVKLMKEAVGGRVGVKAAGGIKTLEDALAAI 191

Class I aldolases. The class I aldolases use an active-site lysine which stabilizes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PRK05283	257	deoxyribose-phosphate aldolase; Provisional	100.0
KOG3981|consensus	326		99.94
COG0274	228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	99.94
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	99.89
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	99.89
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	99.84
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	99.67
PRK07226	267	fructose-bisphosphate aldolase; Provisional	98.59
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	98.06
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	97.77
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	97.45
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	97.06
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	96.99
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	96.59
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	96.08
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	95.89
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	95.69
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	95.51
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	95.42
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	95.32
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	95.26
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	95.2
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	95.13
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	95.1
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	95.07
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	94.99
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	94.93
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	94.9
PLN02826	409	dihydroorotate dehydrogenase	94.82
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	94.66
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	94.56
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	94.32
PLN02535	364	glycolate oxidase	94.31
PLN02274	505	inosine-5'-monophosphate dehydrogenase	94.3
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	94.27
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	94.11
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	94.09
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	93.98
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	93.9
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	93.89
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	93.87
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	93.86
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	93.73
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	93.67
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	93.67
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	93.61
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	93.6
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	93.45
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	93.43
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	93.3
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	93.21
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	93.06
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	92.9
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	92.86
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	92.74
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	92.66
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	92.63
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	92.56
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	92.46
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	92.45
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	92.37
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	92.36
PLN02979	366	glycolate oxidase	92.35
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	92.33
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	92.17
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	92.15
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	92.15
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	92.08
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	91.76
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	91.74
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	91.64
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	91.53
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	91.41
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	91.27
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	91.18
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	91.14
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	90.86
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	90.82
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	90.73
COG0069	485	GltB Glutamate synthase domain 2 [Amino acid trans	90.45
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	90.41
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	90.24
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	89.84
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	89.64
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	89.52
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	89.51
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	89.5
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	89.45
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	89.35
PRK14024	241	phosphoribosyl isomerase A; Provisional	89.3
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	89.26
PRK13523	337	NADPH dehydrogenase NamA; Provisional	88.93
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	88.93
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	88.68
cd01571	302	NAPRTase_B Nicotinate phosphoribosyltransferase (N	88.61
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	88.27
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	87.7
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	87.68
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	87.64
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	87.56
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	87.52
PRK10605	362	N-ethylmaleimide reductase; Provisional	87.25
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	87.23
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	86.94
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	86.79
PRK08227	264	autoinducer 2 aldolase; Validated	86.52
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	86.37
PRK06852	304	aldolase; Validated	86.37
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	86.11
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	86.0
PRK07695	201	transcriptional regulator TenI; Provisional	85.95
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	85.79
PRK04302	223	triosephosphate isomerase; Provisional	85.77
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	85.72
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	85.61
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	85.55
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	85.53
PRK06096	284	molybdenum transport protein ModD; Provisional	85.46
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	85.26
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	85.05
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	84.96
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	84.74
TIGR01334	277	modD putative molybdenum utilization protein ModD.	84.64
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	84.58
PRK09250	348	fructose-bisphosphate aldolase; Provisional	84.56
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	84.52
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	84.49
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	84.39
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	84.36
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	84.21
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	84.1
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	84.09
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	84.06
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	83.89
PRK00208	250	thiG thiazole synthase; Reviewed	83.85
PLN02411	391	12-oxophytodienoate reductase	83.75
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	83.57
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	83.55
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	83.43
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	83.02
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	82.99
TIGR00875	213	fsa_talC_mipB fructose-6-phosphate aldolase, TalC/	82.84
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	82.76
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	82.44
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	82.28
KOG1436|consensus	398		81.7
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	81.63
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	81.3
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	81.26
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	81.21
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	81.1
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	81.0
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	80.98
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	80.94
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	80.82
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	80.74
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	80.49
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	80.14
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	80.04

>PRK05283 deoxyribose-phosphate aldolase; Provisional

Probab=100.00  E-value=3.5e-35  Score=232.01  Aligned_cols=96  Identities=34%  Similarity=0.581  Sum_probs=90.8

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +|++|+++|||| ||||||++.|||     +++|++|++.++++  ..++++||||||||||++||++||++++++||.+
T Consensus       152 a~~~a~~aGADFVKTSTGf~~~gAt-----~edv~lm~~~i~~~--~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~lg~~  224 (257)
T PRK05283        152 ASEIAIKAGADFIKTSTGKVPVNAT-----LEAARIMLEVIRDM--GVAKTVGFKPAGGVRTAEDAAQYLALADEILGAD  224 (257)
T ss_pred             HHHHHHHhCCCEEEcCCCCCCCCCC-----HHHHHHHHHHHHhc--ccCCCeeEEccCCCCCHHHHHHHHHHHHHHhChh
Confidence            789999999999 999999999999     99999999999765  2467899999999999999999999999999999


Q ss_pred             ccCCCceeEeccchHHHHHHHHhh
Q psy969           82 WLNKDLFRIGASSLLNNILQELEA  105 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~~~l~~  105 (106)
                      |++|++||||+||++++|+++|+.
T Consensus       225 ~~~~~~fR~G~Ssll~~~~~~~~~  248 (257)
T PRK05283        225 WADARHFRFGASSLLASLLKTLGH  248 (257)
T ss_pred             hcCcccEeeehHHhHHHHHHHHhc
Confidence            999999999999999999998864

>KOG3981|consensus

Probab=99.94  E-value=6.3e-28  Score=192.49  Aligned_cols=97  Identities=46%  Similarity=0.859  Sum_probs=93.8

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++-+++.+|+|| |||||+..++||     ++....|+.+|++|+.+++++||+|++|||||.+||+.|+.+++++||.+
T Consensus       213 Asm~~mmAGsDFIKTSTGKEtVNAT-----lpVa~VM~~AI~~f~~~Tg~kvGfKPAGGiktv~dalaw~~LVke~LGde  287 (326)
T KOG3981|consen  213 ASMASMMAGSDFIKTSTGKETVNAT-----LPVAYVMCTAIKRFHELTGKKVGFKPAGGIKTVDDALAWVALVKEILGDE  287 (326)
T ss_pred             HHHHHHHhcccceecCCccccccee-----chhHHHHHHHHHHHHHHhCCeeccccCCCcccHHHHHHHHHHHHHHhhhh
Confidence            567899999999 999999999999     99999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeEeccchHHHHHHHHh
Q psy969           82 WLNKDLFRIGASSLLNNILQELE  104 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~~~l~  104 (106)
                      |++|..||||+|++++++++.|-
T Consensus       288 WL~PelFRiGAS~LLdDier~~~  310 (326)
T KOG3981|consen  288 WLNPELFRIGASSLLDDIERGLR  310 (326)
T ss_pred             hcCHHHhhcchHHhHHHHHHHHH
Confidence            99999999999999999988764

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

Probab=99.94  E-value=5.8e-27  Score=183.00  Aligned_cols=75  Identities=28%  Similarity=0.354  Sum_probs=69.9

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +|++|+++|||| ||||||.+.|||     +|++++|++.+       ++++||||||||||++||+.|++     +|+ 
T Consensus       145 A~~i~~~aGAdFVKTSTGf~~~gAT-----~edv~lM~~~v-------g~~vgvKaSGGIrt~eda~~~i~-----aga-  206 (228)
T COG0274         145 ACEIAIEAGADFVKTSTGFSAGGAT-----VEDVKLMKETV-------GGRVGVKASGGIRTAEDAKAMIE-----AGA-  206 (228)
T ss_pred             HHHHHHHhCCCEEEcCCCCCCCCCC-----HHHHHHHHHHh-------ccCceeeccCCcCCHHHHHHHHH-----HhH-
Confidence            799999999999 999999999999     99999999986       79999999999999999999999     688 


Q ss_pred             ccCCCceeEeccchHHHHHH
Q psy969           82 WLNKDLFRIGASSLLNNILQ  101 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~~  101 (106)
                            +|||+|++++++.+
T Consensus       207 ------~RiGtSs~v~i~~~  220 (228)
T COG0274         207 ------TRIGTSSGVAILEG  220 (228)
T ss_pred             ------HHhccccHHHHHHh
Confidence                  79999999955443

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=99.89  E-value=6.8e-24  Score=162.94  Aligned_cols=73  Identities=32%  Similarity=0.448  Sum_probs=68.5

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +|++++++|||| ||||||.+.|+|     ++++++|++.+       +++++||+||||||++|+++|++     +|++
T Consensus       137 a~~ia~eaGADfvKTsTGf~~~gat-----~~dv~~m~~~v-------~~~v~IKaaGGirt~~~a~~~i~-----aGa~  199 (211)
T TIGR00126       137 ACEICIDAGADFVKTSTGFGAGGAT-----VEDVRLMRNTV-------GDTIGVKASGGVRTAEDAIAMIE-----AGAS  199 (211)
T ss_pred             HHHHHHHhCCCEEEeCCCCCCCCCC-----HHHHHHHHHHh-------ccCCeEEEeCCCCCHHHHHHHHH-----HhhH
Confidence            689999999999 999999999999     99999999886       46899999999999999999999     6995


Q ss_pred             ccCCCceeEeccchHHHH
Q psy969           82 WLNKDLFRIGASSLLNNI   99 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l   99 (106)
                             |||+|++.+++
T Consensus       200 -------riGts~~~~i~  210 (211)
T TIGR00126       200 -------RIGASAGVAII  210 (211)
T ss_pred             -------HhCcchHHHHh
Confidence                   99999999875

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=99.89  E-value=4.4e-23  Score=159.10  Aligned_cols=75  Identities=25%  Similarity=0.397  Sum_probs=70.1

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +|++|+++|+|| ||||||.+.|+|     +++|++|++.+       +++++||+||||||++||++|++     +|++
T Consensus       141 a~~~~~~agadfIKTsTG~~~~gat-----~~~v~~m~~~~-------~~~~~IKasGGIrt~~~a~~~i~-----aGA~  203 (221)
T PRK00507        141 ACEIAKEAGADFVKTSTGFSTGGAT-----VEDVKLMRETV-------GPRVGVKASGGIRTLEDALAMIE-----AGAT  203 (221)
T ss_pred             HHHHHHHhCCCEEEcCCCCCCCCCC-----HHHHHHHHHHh-------CCCceEEeeCCcCCHHHHHHHHH-----cCcc
Confidence            689999999999 999999999999     99999999875       68999999999999999999999     7994


Q ss_pred             ccCCCceeEeccchHHHHHH
Q psy969           82 WLNKDLFRIGASSLLNNILQ  101 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~~  101 (106)
                             |||||++.+++.+
T Consensus       204 -------riGtS~~~~i~~~  216 (221)
T PRK00507        204 -------RLGTSAGVAILKG  216 (221)
T ss_pred             -------eEccCcHHHHHhc
Confidence                   9999999998754

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=99.84  E-value=2.7e-21  Score=145.16  Aligned_cols=67  Identities=36%  Similarity=0.550  Sum_probs=63.0

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +||+|+++|||| ||||||.+.++|     ++++++|++.+       +.+++||+||||||++|+++|++     +|++
T Consensus       136 a~ria~e~GaD~IKTsTG~~~~~at-----~~~v~~~~~~~-------~~~v~ik~aGGikt~~~~l~~~~-----~g~~  198 (203)
T cd00959         136 ACEIAIEAGADFIKTSTGFGPGGAT-----VEDVKLMKEAV-------GGRVGVKAAGGIRTLEDALAMIE-----AGAT  198 (203)
T ss_pred             HHHHHHHhCCCEEEcCCCCCCCCCC-----HHHHHHHHHHh-------CCCceEEEeCCCCCHHHHHHHHH-----hChh
Confidence            689999999999 999999999999     99999999986       36799999999999999999999     6994


Q ss_pred             ccCCCceeEecc
Q psy969           82 WLNKDLFRIGAS   93 (106)
Q Consensus        82 w~~~~~~RiGtS   93 (106)
                             |||+|
T Consensus       199 -------riG~s  203 (203)
T cd00959         199 -------RIGTS  203 (203)
T ss_pred             -------hccCC
Confidence                   99997

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=99.67  E-value=6e-17  Score=123.26  Aligned_cols=78  Identities=33%  Similarity=0.422  Sum_probs=68.5

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCC------CCHHHHHHHHHHHH
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGI------STFEDSVRWIYLVL   75 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGI------rt~~~a~~~i~l~~   75 (106)
                      +|++++++|||| |||||+. .++|     ++++++|++.++.+.  .+++++||+||||      |++++|.++++   
T Consensus       151 a~ria~e~GaD~vKt~tg~~-~~~t-----~~~~~~~~~~~~~~~--~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~---  219 (236)
T PF01791_consen  151 AARIAAELGADFVKTSTGKP-VGAT-----PEDVELMRKAVEAAP--VPGKVGVKASGGIDAEDFLRTLEDALEFIE---  219 (236)
T ss_dssp             HHHHHHHTT-SEEEEE-SSS-SCSH-----HHHHHHHHHHHHTHS--STTTSEEEEESSSSHHHHHHSHHHHHHHHH---
T ss_pred             HHHHHHHhCCCEEEecCCcc-cccc-----HHHHHHHHHHHHhcC--CCcceEEEEeCCCChHHHHHHHHHHHHHHH---
Confidence            689999999999 9999987 9999     999999999987541  3478999999999      99999999999   


Q ss_pred             hhCCCCccCCCceeEeccchHHHHH
Q psy969           76 IMLGPDWLNKDLFRIGASSLLNNIL  100 (106)
Q Consensus        76 ~~lGa~w~~~~~~RiGtSs~~~~l~  100 (106)
                        +|++       |+|+|++.+++.
T Consensus       220 --aGa~-------~~G~~~Gr~i~q  235 (236)
T PF01791_consen  220 --AGAD-------RIGTSSGRNIWQ  235 (236)
T ss_dssp             --TTHS-------EEEEEEHHHHHT
T ss_pred             --cCCh-------hHHHHHHHHHHc
Confidence              7995       999999998764

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=98.59  E-value=1.4e-07  Score=73.70  Aligned_cols=69  Identities=17%  Similarity=0.106  Sum_probs=51.1

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCC--CHHHHHHHHHHHHhhCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIS--TFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIr--t~~~a~~~i~l~~~~lG   79 (106)
                      +++++.+.|||| ||+  |.    .       ++++|.+.++      ..++.||++|||+  |++++++++..+.+ +|
T Consensus       165 a~~~a~e~GAD~vKt~--~~----~-------~~~~l~~~~~------~~~ipV~a~GGi~~~~~~~~l~~v~~~~~-aG  224 (267)
T PRK07226        165 AARVAAELGADIVKTN--YT----G-------DPESFREVVE------GCPVPVVIAGGPKTDTDREFLEMVRDAME-AG  224 (267)
T ss_pred             HHHHHHHHCCCEEeeC--CC----C-------CHHHHHHHHH------hCCCCEEEEeCCCCCCHHHHHHHHHHHHH-cC
Confidence            478999999999 998  42    1       3566666543      2468999999999  99999999854433 68


Q ss_pred             CCccCCCceeEeccchHHHHH
Q psy969           80 PDWLNKDLFRIGASSLLNNIL  100 (106)
Q Consensus        80 a~w~~~~~~RiGtSs~~~~l~  100 (106)
                      +       .  |+|.+.+++.
T Consensus       225 A-------~--Gis~gr~i~~  236 (267)
T PRK07226        225 A-------A--GVAVGRNVFQ  236 (267)
T ss_pred             C-------c--EEehhhhhhc
Confidence            7       2  7877776653

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=98.06  E-value=7.8e-06  Score=63.39  Aligned_cols=57  Identities=19%  Similarity=0.084  Sum_probs=40.4

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCC--CHHHHHHHHHHHHhhCCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIS--TFEDSVRWIYLVLIMLGP   80 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIr--t~~~a~~~i~l~~~~lGa   80 (106)
                      ++.+.++|||| ||+.  .   .        +++.|.+..+      ..++.||++|||+  |++++++++..+.+ +|+
T Consensus       162 ~~~a~~~GADyikt~~--~---~--------~~~~l~~~~~------~~~iPVva~GGi~~~~~~~~~~~i~~~~~-aGa  221 (258)
T TIGR01949       162 ARLGAELGADIVKTPY--T---G--------DIDSFRDVVK------GCPAPVVVAGGPKTNSDREFLQMIKDAME-AGA  221 (258)
T ss_pred             HHHHHHHCCCEEeccC--C---C--------CHHHHHHHHH------hCCCcEEEecCCCCCCHHHHHHHHHHHHH-cCC
Confidence            67889999999 9973  1   1        3444554432      2458899999999  88999888843322 688

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>cd00945 Aldolase_Class_I Class I aldolases

Probab=97.77  E-value=0.00013  Score=51.91  Aligned_cols=61  Identities=36%  Similarity=0.531  Sum_probs=49.5

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++++.+.|+|+ |+++|+.+.+.+     .+.++.+++..       ++++.|++.||+++++++.+++.     +|++
T Consensus       135 ~~~~~~~g~~~iK~~~~~~~~~~~-----~~~~~~i~~~~-------~~~~~v~~~gg~~~~~~~~~~~~-----~Ga~  196 (201)
T cd00945         135 ARIAAEAGADFIKTSTGFGGGGAT-----VEDVKLMKEAV-------GGRVGVKAAGGIKTLEDALAAIE-----AGAD  196 (201)
T ss_pred             HHHHHHhCCCEEEeCCCCCCCCCC-----HHHHHHHHHhc-------ccCCcEEEECCCCCHHHHHHHHH-----hccc
Confidence            45667899999 999998777777     77777766542       44689999999999999999999     6874

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=97.45  E-value=0.00025  Score=56.97  Aligned_cols=35  Identities=37%  Similarity=0.515  Sum_probs=28.0

Q ss_pred             HHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           42 IKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        42 i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++++++..++++-|.++|||+|.+||.+++.     +|++
T Consensus       270 v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~-----aGAd  304 (327)
T cd04738         270 LRELYKLTGGKIPIIGVGGISSGEDAYEKIR-----AGAS  304 (327)
T ss_pred             HHHHHHHhCCCCcEEEECCCCCHHHHHHHHH-----cCCC
Confidence            3333444566799999999999999999998     6985

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=97.06  E-value=0.0017  Score=52.72  Aligned_cols=73  Identities=16%  Similarity=0.118  Sum_probs=45.1

Q ss_pred             hhHHHhhCCCc-ccCCCCCCC-CC-------CCCCCC-chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969            4 PRKVAFKGSNF-RTLHGRGPD-ST-------SYGNVC-NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL   73 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~-ga-------t~~~~~-~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l   73 (106)
                      ++.+.++|+|+ ..+.++... +.       .++..+ +..-.+-.+.++++++..++++-|.++|||+|.+||.+++. 
T Consensus       231 a~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~-  309 (344)
T PRK05286        231 ADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIR-  309 (344)
T ss_pred             HHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH-
Confidence            46678899999 655543110 00       000000 11112233445555555666799999999999999999998 


Q ss_pred             HHhhCCCC
Q psy969           74 VLIMLGPD   81 (106)
Q Consensus        74 ~~~~lGa~   81 (106)
                          +|++
T Consensus       310 ----aGAd  313 (344)
T PRK05286        310 ----AGAS  313 (344)
T ss_pred             ----cCCC
Confidence                6986

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=96.99  E-value=0.0034  Score=47.42  Aligned_cols=58  Identities=17%  Similarity=0.144  Sum_probs=36.6

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCC--CCHHHHHHHHHHHHhhCCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGI--STFEDSVRWIYLVLIMLGP   80 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGI--rt~~~a~~~i~l~~~~lGa   80 (106)
                      ++++.++|||| ||+  |.   ..     ++..+.+++.         -++.|+++|||  +|.+++++.+..+.+ .|+
T Consensus       149 ~~~a~~~GaD~Ik~~--~~---~~-----~~~~~~i~~~---------~~~pvv~~GG~~~~~~~~~l~~~~~~~~-~Ga  208 (235)
T cd00958         149 ARIGAELGADIVKTK--YT---GD-----AESFKEVVEG---------CPVPVVIAGGPKKDSEEEFLKMVYDAME-AGA  208 (235)
T ss_pred             HHHHHHHCCCEEEec--CC---CC-----HHHHHHHHhc---------CCCCEEEeCCCCCCCHHHHHHHHHHHHH-cCC
Confidence            67899999999 995  21   13     3444443332         23558999998  788775555443332 788


Q ss_pred             C
Q psy969           81 D   81 (106)
Q Consensus        81 ~   81 (106)
                      +
T Consensus       209 ~  209 (235)
T cd00958         209 A  209 (235)
T ss_pred             c
Confidence            4

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=96.59  E-value=0.0087  Score=46.42  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=27.5

Q ss_pred             HHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           42 IKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        42 i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +++.++..+.++-|-++|||+|.+++.+++.     +|++
T Consensus       233 v~~i~~~~~~~ipiia~GGI~~~~da~~~l~-----~GAd  267 (289)
T cd02810         233 VARLAARLQLDIPIIGVGGIDSGEDVLEMLM-----AGAS  267 (289)
T ss_pred             HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-----cCcc
Confidence            3344444544689999999999999999998     6885

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=96.08  E-value=0.035  Score=43.97  Aligned_cols=35  Identities=20%  Similarity=0.533  Sum_probs=28.0

Q ss_pred             HHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           42 IKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        42 i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +++.++..++++-|=+.|||+|.+|+.+++.     +|++
T Consensus       242 v~~~~~~~~~~ipIig~GGI~~~~da~~~l~-----aGA~  276 (299)
T cd02940         242 VSQIARAPEPGLPISGIGGIESWEDAAEFLL-----LGAS  276 (299)
T ss_pred             HHHHHHhcCCCCcEEEECCCCCHHHHHHHHH-----cCCC
Confidence            3344444556788999999999999999998     7996

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=95.89  E-value=0.032  Score=44.79  Aligned_cols=64  Identities=20%  Similarity=0.213  Sum_probs=47.3

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      ..|+++|+|+ .-      .+-+     ++.++...+.++.    ..+++.|=+|||| |.+++.+|.+     +|+|  
T Consensus       196 ~~A~~~GaDiI~L------Dn~~-----~e~l~~~v~~~~~----~~~~~~ieAsGgI-t~~ni~~ya~-----~GvD--  252 (273)
T PRK05848        196 KNAMNAGADIVMC------DNMS-----VEEIKEVVAYRNA----NYPHVLLEASGNI-TLENINAYAK-----SGVD--  252 (273)
T ss_pred             HHHHHcCCCEEEE------CCCC-----HHHHHHHHHHhhc----cCCCeEEEEECCC-CHHHHHHHHH-----cCCC--
Confidence            4678899999 72      2234     7776666654421    2367889999999 9999999999     7997  


Q ss_pred             CCCceeEeccchH
Q psy969           84 NKDLFRIGASSLL   96 (106)
Q Consensus        84 ~~~~~RiGtSs~~   96 (106)
                           +|.++++.
T Consensus       253 -----~IsvG~l~  260 (273)
T PRK05848        253 -----AISSGSLI  260 (273)
T ss_pred             -----EEEeChhh
Confidence                 77776643

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=95.69  E-value=0.035  Score=47.61  Aligned_cols=73  Identities=16%  Similarity=0.180  Sum_probs=47.1

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCC-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTS-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++.++++|||| |.+.|-+...+|     -+-|-..++....+..++      ..+-|=+.|||++..|+..-+.     
T Consensus       296 a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~------~~v~vIadGGi~~~~di~kAla-----  364 (495)
T PTZ00314        296 AKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARE------RGVPCIADGGIKNSGDICKALA-----  364 (495)
T ss_pred             HHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhh------cCCeEEecCCCCCHHHHHHHHH-----
Confidence            56789999999 976543322222     112224444444444432      3477889999999999999999     


Q ss_pred             CCCCccCCCc
Q psy969           78 LGPDWLNKDL   87 (106)
Q Consensus        78 lGa~w~~~~~   87 (106)
                      +|++++--+.
T Consensus       365 ~GA~~Vm~G~  374 (495)
T PTZ00314        365 LGADCVMLGS  374 (495)
T ss_pred             cCCCEEEECc
Confidence            7997554333

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=95.51  E-value=0.079  Score=42.00  Aligned_cols=64  Identities=19%  Similarity=0.182  Sum_probs=41.3

Q ss_pred             hhHHHhhCCCc-ccC-CCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-RTL-HGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-KTS-TG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++.+.++|+|+ -.+ +|-......     +.....+.+..+.    .++++-|=++|||++..|+.+++.     +|++
T Consensus       186 a~~a~~~G~d~I~v~~~gG~~~~~g-----~~~~~~l~~i~~~----~~~~ipvia~GGI~~~~d~~kal~-----lGAd  251 (299)
T cd02809         186 ALRAVDAGADGIVVSNHGGRQLDGA-----PATIDALPEIVAA----VGGRIEVLLDGGIRRGTDVLKALA-----LGAD  251 (299)
T ss_pred             HHHHHHCCCCEEEEcCCCCCCCCCC-----cCHHHHHHHHHHH----hcCCCeEEEeCCCCCHHHHHHHHH-----cCCC
Confidence            46788999999 443 331111111     2334444433222    344688999999999999999998     7986

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=95.42  E-value=0.095  Score=42.27  Aligned_cols=25  Identities=36%  Similarity=0.698  Sum_probs=22.9

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++-|=+.|||+|.+||.+++.     +|++
T Consensus       237 ~ipIig~GGI~s~~Da~e~l~-----aGA~  261 (325)
T cd04739         237 KASLAASGGVHDAEDVVKYLL-----AGAD  261 (325)
T ss_pred             CCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence            588889999999999999998     7996

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=95.32  E-value=0.11  Score=40.37  Aligned_cols=68  Identities=19%  Similarity=0.223  Sum_probs=45.9

Q ss_pred             hHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969            5 RKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus         5 ~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      ..|.++|+||  -|-.||.+....    =..|.+++.+..+       ..+-|=+=|+|.|+++|.+.++     +|+. 
T Consensus       106 ~~A~~~G~D~I~TTLsGYT~~t~~----~~pD~~lv~~l~~-------~~~pvIaEGri~tpe~a~~al~-----~GA~-  168 (192)
T PF04131_consen  106 INAAELGFDIIGTTLSGYTPYTKG----DGPDFELVRELVQ-------ADVPVIAEGRIHTPEQAAKALE-----LGAH-  168 (192)
T ss_dssp             HHHHHTT-SEEE-TTTTSSTTSTT----SSHHHHHHHHHHH-------TTSEEEEESS--SHHHHHHHHH-----TT-S-
T ss_pred             HHHHHcCCCEEEcccccCCCCCCC----CCCCHHHHHHHHh-------CCCcEeecCCCCCHHHHHHHHh-----cCCe-
Confidence            4578899999  889998764332    1568888876542       2566889999999999999999     7984 


Q ss_pred             cCCCceeEecc
Q psy969           83 LNKDLFRIGAS   93 (106)
Q Consensus        83 ~~~~~~RiGtS   93 (106)
                          ..-+|+.
T Consensus       169 ----aVVVGsA  175 (192)
T PF04131_consen  169 ----AVVVGSA  175 (192)
T ss_dssp             ----EEEE-HH
T ss_pred             ----EEEECcc
Confidence                4456664

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=95.26  E-value=0.081  Score=43.11  Aligned_cols=38  Identities=21%  Similarity=0.308  Sum_probs=31.4

Q ss_pred             HHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           39 CSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        39 ~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++.++++++..++++-|=++|||.|.+||.+++.     +|++
T Consensus       275 l~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~-----aGA~  312 (335)
T TIGR01036       275 TEIIRRLYAELQGRLPIIGVGGISSAQDALEKIR-----AGAS  312 (335)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH-----cCCc
Confidence            4455566666777899999999999999999999     7985

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=95.20  E-value=0.056  Score=42.43  Aligned_cols=40  Identities=25%  Similarity=0.463  Sum_probs=31.2

Q ss_pred             HHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           37 IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        37 lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +-++.+++.++..++++-|=++|||.|.+||.+|+.     +||+
T Consensus       229 ~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~-----aGA~  268 (295)
T PF01180_consen  229 IALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLM-----AGAS  268 (295)
T ss_dssp             HHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHH-----HTES
T ss_pred             HHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHH-----hCCC
Confidence            344556666777778899999999999999999999     6985

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=95.13  E-value=0.052  Score=43.15  Aligned_cols=61  Identities=18%  Similarity=0.232  Sum_probs=38.4

Q ss_pred             HHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEe-ccchHHHHHHHHhh
Q psy969           40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG-ASSLLNNILQELEA  105 (106)
Q Consensus        40 ~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiG-tSs~~~~l~~~l~~  105 (106)
                      +.+++.++..+.++-|=++|||.|.+||++++.     +|++-+.-.+--+. --.....+.++|+.
T Consensus       231 ~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~-----aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~  292 (294)
T cd04741         231 GNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRL-----AGASAVQVGTALGKEGPKVFARIEKELED  292 (294)
T ss_pred             HHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHH-----cCCCceeEchhhhhcCchHHHHHHHHHHh
Confidence            334444555666788999999999999999998     79963322222221 12234455556553

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=95.10  E-value=0.11  Score=41.71  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=26.8

Q ss_pred             HHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        40 ~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.+.++..  ++-|=++|||+|.+||.+++.     +|++
T Consensus       229 ~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~-----aGA~  263 (334)
T PRK07565        229 RWIAILSGRV--GADLAATTGVHDAEDVIKMLL-----AGAD  263 (334)
T ss_pred             HHHHHHHhhc--CCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence            3444444433  577889999999999999998     7986

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=95.07  E-value=0.082  Score=39.14  Aligned_cols=64  Identities=16%  Similarity=0.355  Sum_probs=43.5

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      ..|.++|+|| |-   |-.....     ++-++.+++.        -+.+-+=++||| |.+.+.+|++     +|+   
T Consensus       111 ~~A~~~Gad~i~~---~p~~~~g-----~~~~~~l~~~--------~~~~p~~a~GGI-~~~n~~~~~~-----~G~---  165 (190)
T cd00452         111 MQALELGADIVKL---FPAEAVG-----PAYIKALKGP--------FPQVRFMPTGGV-SLDNAAEWLA-----AGV---  165 (190)
T ss_pred             HHHHHCCCCEEEE---cCCcccC-----HHHHHHHHhh--------CCCCeEEEeCCC-CHHHHHHHHH-----CCC---
Confidence            4577899999 85   2111112     3333333321        135889999999 9999999999     798   


Q ss_pred             CCCceeEeccchHH
Q psy969           84 NKDLFRIGASSLLN   97 (106)
Q Consensus        84 ~~~~~RiGtSs~~~   97 (106)
                          ..++.++.+.
T Consensus       166 ----~~v~v~s~i~  175 (190)
T cd00452         166 ----VAVGGGSLLP  175 (190)
T ss_pred             ----EEEEEchhcc
Confidence                5888888753

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=94.99  E-value=0.088  Score=44.18  Aligned_cols=66  Identities=17%  Similarity=0.153  Sum_probs=44.2

Q ss_pred             hhHHHhhCCCc-ccC-CCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-RTL-HGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-KTS-TG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++.++++|+|+ .-| .|=......     +..+..+.+..+    .+++++-|=++||||+-.|+.+-+.     ||++
T Consensus       267 A~~a~~~G~d~I~vsnhGGr~~d~~-----~~t~~~L~ei~~----~~~~~~~vi~dGGIr~G~Dv~KALa-----LGA~  332 (383)
T cd03332         267 ARRAVEAGVDGVVVSNHGGRQVDGS-----IAALDALPEIVE----AVGDRLTVLFDSGVRTGADIMKALA-----LGAK  332 (383)
T ss_pred             HHHHHHCCCCEEEEcCCCCcCCCCC-----cCHHHHHHHHHH----HhcCCCeEEEeCCcCcHHHHHHHHH-----cCCC
Confidence            46789999999 444 331111112     344455444432    2466788999999999999999999     7997


Q ss_pred             cc
Q psy969           82 WL   83 (106)
Q Consensus        82 w~   83 (106)
                      .+
T Consensus       333 ~v  334 (383)
T cd03332         333 AV  334 (383)
T ss_pred             EE
Confidence            43

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=94.93  E-value=0.11  Score=40.85  Aligned_cols=63  Identities=17%  Similarity=0.052  Sum_probs=37.8

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCC----CCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY   72 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~----~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~   72 (106)
                      ++.+.+.|+|| ..+.|+........    .+-......+. .++   +..  ++-|-+.|||+|.+++.++++
T Consensus       234 a~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~-~ir---~~~--~iPVi~~Ggi~t~~~a~~~l~  301 (327)
T cd02803         234 AKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAE-KIK---KAV--KIPVIAVGGIRDPEVAEEILA  301 (327)
T ss_pred             HHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHH-HHH---HHC--CCCEEEeCCCCCHHHHHHHHH
Confidence            45667789999 88888643211100    00011222222 222   222  477899999999999999999

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=94.90  E-value=0.12  Score=44.60  Aligned_cols=76  Identities=22%  Similarity=0.241  Sum_probs=52.6

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCC-----CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHh
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSY-----GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLI   76 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~-----~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~   76 (106)
                      .++.++++|||| |-+-|=+..-+|-     +-|=..++....++.++|.+..+.++-|=+-||||+.-|...-+.    
T Consensus       297 ~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla----  372 (502)
T PRK07107        297 GFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALA----  372 (502)
T ss_pred             HHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHH----
Confidence            356789999999 9877644222221     111134566666666556555676788999999999999888888    


Q ss_pred             hCCCCcc
Q psy969           77 MLGPDWL   83 (106)
Q Consensus        77 ~lGa~w~   83 (106)
                       +|++++
T Consensus       373 -~GA~~v  378 (502)
T PRK07107        373 -MGADFI  378 (502)
T ss_pred             -cCCCee
Confidence             798754

>PLN02826 dihydroorotate dehydrogenase

Probab=94.82  E-value=0.17  Score=42.68  Aligned_cols=36  Identities=31%  Similarity=0.455  Sum_probs=29.9

Q ss_pred             HHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        41 ~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+++.++..++++-|=..|||.|.+||.++|.     +||+
T Consensus       330 ~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~-----AGAs  365 (409)
T PLN02826        330 VLREMYRLTRGKIPLVGCGGVSSGEDAYKKIR-----AGAS  365 (409)
T ss_pred             HHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH-----hCCC
Confidence            34445555677899999999999999999999     7996

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=94.66  E-value=0.1  Score=44.15  Aligned_cols=71  Identities=24%  Similarity=0.222  Sum_probs=45.2

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCC--C-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHH
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDST--S-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVL   75 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~ga--t-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~   75 (106)
                      ++.++++|||+ +-  |++|.+.  |     -+.|=..++..+.+.++      ...+-|=+.|||++..|+.+.+.   
T Consensus       208 a~~l~~aGaD~I~v--G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~------~~~vpVIAdGGI~~~~Di~KALa---  276 (404)
T PRK06843        208 ALDLISVGADCLKV--GIGPGSICTTRIVAGVGVPQITAICDVYEVCK------NTNICIIADGGIRFSGDVVKAIA---  276 (404)
T ss_pred             HHHHHHcCCCEEEE--CCCCCcCCcceeecCCCCChHHHHHHHHHHHh------hcCCeEEEeCCCCCHHHHHHHHH---
Confidence            45688899999 93  6655431  0     01111334444444432      23467889999999999999999   


Q ss_pred             hhCCCCccCCCc
Q psy969           76 IMLGPDWLNKDL   87 (106)
Q Consensus        76 ~~lGa~w~~~~~   87 (106)
                        +|++.+--+.
T Consensus       277 --lGA~aVmvGs  286 (404)
T PRK06843        277 --AGADSVMIGN  286 (404)
T ss_pred             --cCCCEEEEcc
Confidence              7997554333

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=94.56  E-value=0.12  Score=43.11  Aligned_cols=64  Identities=13%  Similarity=0.033  Sum_probs=42.5

Q ss_pred             hhHHHhhCCCc-ccCC-CCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-RTLH-GRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-KTST-G~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++.+++.|+|+ ..|. |...-...     +..+..+.+..+.    .+  +-|=+.||||+..|+..-+.     +|++
T Consensus       250 a~~a~~~G~d~I~VSnhGGrqld~~-----~~~~~~L~ei~~~----~~--~~vi~dGGIr~g~Dv~KALa-----LGA~  313 (361)
T cd04736         250 AKRCIELGADGVILSNHGGRQLDDA-----IAPIEALAEIVAA----TY--KPVLIDSGIRRGSDIVKALA-----LGAN  313 (361)
T ss_pred             HHHHHHCCcCEEEECCCCcCCCcCC-----ccHHHHHHHHHHH----hC--CeEEEeCCCCCHHHHHHHHH-----cCCC
Confidence            46789999999 6553 32211111     2245555554322    22  67889999999999999999     7997


Q ss_pred             cc
Q psy969           82 WL   83 (106)
Q Consensus        82 w~   83 (106)
                      .+
T Consensus       314 aV  315 (361)
T cd04736         314 AV  315 (361)
T ss_pred             EE
Confidence            43

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=94.32  E-value=0.27  Score=36.14  Aligned_cols=61  Identities=20%  Similarity=0.264  Sum_probs=40.0

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.+.|+|| +..+||......  ..-++.++.+++.+        +.+-|=+.||| +.+.+.++++     .|++
T Consensus       120 ~~~~~~g~d~v~~~pg~~~~~~~--~~~~~~i~~l~~~~--------~~~~i~v~GGI-~~~n~~~~~~-----~Ga~  181 (206)
T TIGR03128       120 KELKELGADYIGVHTGLDEQAKG--QNPFEDLQTILKLV--------KEARVAVAGGI-NLDTIPDVIK-----LGPD  181 (206)
T ss_pred             HHHHHcCCCEEEEcCCcCcccCC--CCCHHHHHHHHHhc--------CCCcEEEECCc-CHHHHHHHHH-----cCCC
Confidence            4456779999 998887532221  11144555555432        23456668999 8899999998     7986

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PLN02535 glycolate oxidase

Probab=94.31  E-value=0.19  Score=41.95  Aligned_cols=64  Identities=17%  Similarity=0.164  Sum_probs=44.2

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++.++++|+|+  -+.+|-...+.+     +..+..+.+..+    ..+.++-|=++||||+..|+.+.+.     +|++
T Consensus       237 A~~a~~~GvD~I~vsn~GGr~~d~~-----~~t~~~L~ev~~----av~~~ipVi~dGGIr~g~Dv~KALa-----lGA~  302 (364)
T PLN02535        237 AIKAVEVGVAGIIVSNHGARQLDYS-----PATISVLEEVVQ----AVGGRVPVLLDGGVRRGTDVFKALA-----LGAQ  302 (364)
T ss_pred             HHHHHhcCCCEEEEeCCCcCCCCCC-----hHHHHHHHHHHH----HHhcCCCEEeeCCCCCHHHHHHHHH-----cCCC
Confidence            46789999999  555652222223     444444444332    2356788999999999999999999     7996

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=94.30  E-value=0.14  Score=44.13  Aligned_cols=70  Identities=21%  Similarity=0.202  Sum_probs=46.1

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCC-----CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSY-----GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~-----~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++.++++|||+ |.+-|-+....|.     +.|=+.++..+.+..++      .++-|=+.|||++..|+.+-+.     
T Consensus       303 a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~------~~vpVIadGGI~~~~di~kAla-----  371 (505)
T PLN02274        303 AQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ------HGVPVIADGGISNSGHIVKALT-----  371 (505)
T ss_pred             HHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHh------cCCeEEEeCCCCCHHHHHHHHH-----
Confidence            46788999999 9874322222221     11113466666555432      3477889999999999999999     


Q ss_pred             CCCCccC
Q psy969           78 LGPDWLN   84 (106)
Q Consensus        78 lGa~w~~   84 (106)
                      +|++.+-
T Consensus       372 ~GA~~V~  378 (505)
T PLN02274        372 LGASTVM  378 (505)
T ss_pred             cCCCEEE
Confidence            7997443

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=94.27  E-value=0.13  Score=42.20  Aligned_cols=39  Identities=28%  Similarity=0.408  Sum_probs=32.7

Q ss_pred             HHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969           40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus        40 ~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.++++|+..++++-|=..|||.|.+||.++|.     +||+-+
T Consensus       229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~-----aGA~~v  267 (310)
T COG0167         229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFIL-----AGASAV  267 (310)
T ss_pred             HHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHH-----cCCchh
Confidence            345666777888999999999999999999999     798643

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=94.11  E-value=0.24  Score=39.90  Aligned_cols=66  Identities=23%  Similarity=0.225  Sum_probs=47.9

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      ..++++|+|. . --     +-+     +++++...+.+++..  .++++.+=+|||| |.+...+|.+     .|+|  
T Consensus       196 ~~a~~agaDiI~-LD-----n~~-----~e~l~~~v~~l~~~~--~~~~~~leaSGGI-~~~ni~~yA~-----tGvD--  254 (278)
T PRK08385        196 LKAAKAGADIIM-LD-----NMT-----PEEIREVIEALKREG--LRERVKIEVSGGI-TPENIEEYAK-----LDVD--  254 (278)
T ss_pred             HHHHHcCcCEEE-EC-----CCC-----HHHHHHHHHHHHhcC--cCCCEEEEEECCC-CHHHHHHHHH-----cCCC--
Confidence            4677889987 4 22     225     777777766554320  1368999999999 9999999999     7997  


Q ss_pred             CCCceeEeccchH
Q psy969           84 NKDLFRIGASSLL   96 (106)
Q Consensus        84 ~~~~~RiGtSs~~   96 (106)
                           .|.+|++.
T Consensus       255 -----~Is~galt  262 (278)
T PRK08385        255 -----VISLGALT  262 (278)
T ss_pred             -----EEEeChhh
Confidence                 88887653

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=94.09  E-value=0.2  Score=42.50  Aligned_cols=70  Identities=21%  Similarity=0.221  Sum_probs=42.6

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCC--CCC--CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDS--TSY--GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML   78 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~g--at~--~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l   78 (106)
                      ++.++++|||+ +.  |++|..  .|-  -.+=..++..+.+..+..   ....+-|=+.||||+..|+..-+.     +
T Consensus       283 a~~l~~aGad~i~v--g~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~---~~~~~~viadGGi~~~~di~kAla-----~  352 (486)
T PRK05567        283 ARALIEAGADAVKV--GIGPGSICTTRIVAGVGVPQITAIADAAEAA---KKYGIPVIADGGIRYSGDIAKALA-----A  352 (486)
T ss_pred             HHHHHHcCCCEEEE--CCCCCccccceeecCCCcCHHHHHHHHHHHh---ccCCCeEEEcCCCCCHHHHHHHHH-----h
Confidence            45788999999 95  443321  000  000023444444443221   123577889999999999999999     7


Q ss_pred             CCCcc
Q psy969           79 GPDWL   83 (106)
Q Consensus        79 Ga~w~   83 (106)
                      |++.+
T Consensus       353 GA~~v  357 (486)
T PRK05567        353 GASAV  357 (486)
T ss_pred             CCCEE
Confidence            98743

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=93.98  E-value=0.23  Score=37.22  Aligned_cols=71  Identities=18%  Similarity=0.152  Sum_probs=41.7

Q ss_pred             hhHHHhhCCCc-cc-CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-RT-LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-KT-STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.+.+.|+|| .+ +.|+......   .-..+..++.+. +   +..  ++-|=++|||+|.+++.++++     +|++
T Consensus       132 ~~~a~~~G~d~i~~~~~g~t~~~~~---~~~~~~~~i~~i-~---~~~--~iPvia~GGI~t~~~~~~~l~-----~Gad  197 (221)
T PRK01130        132 GLAAQKLGFDFIGTTLSGYTEETKK---PEEPDFALLKEL-L---KAV--GCPVIAEGRINTPEQAKKALE-----LGAH  197 (221)
T ss_pred             HHHHHHcCCCEEEcCCceeecCCCC---CCCcCHHHHHHH-H---HhC--CCCEEEECCCCCHHHHHHHHH-----CCCC
Confidence            35678899999 76 4454321100   002233333322 2   222  345668999999999999999     6875


Q ss_pred             ccCCCceeEecc
Q psy969           82 WLNKDLFRIGAS   93 (106)
Q Consensus        82 w~~~~~~RiGtS   93 (106)
                           ..-+|++
T Consensus       198 -----gV~iGsa  204 (221)
T PRK01130        198 -----AVVVGGA  204 (221)
T ss_pred             -----EEEEchH
Confidence                 3455543

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=93.90  E-value=0.17  Score=42.57  Aligned_cols=67  Identities=22%  Similarity=0.162  Sum_probs=41.5

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCC-----CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSY-----GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~-----~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++.++++|||| |++-|-+....|-     +-|=...+....++.+      ...+-|=+.|||++..|+..-++     
T Consensus       279 a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~------~~~vpviadGGi~~~~di~kAla-----  347 (450)
T TIGR01302       279 AKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAA------QSGIPVIADGGIRYSGDIVKALA-----  347 (450)
T ss_pred             HHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHh------hcCCeEEEeCCCCCHHHHHHHHH-----
Confidence            56789999999 9864322111110     0000223333333332      23477889999999999999999     


Q ss_pred             CCCC
Q psy969           78 LGPD   81 (106)
Q Consensus        78 lGa~   81 (106)
                      +|++
T Consensus       348 ~GA~  351 (450)
T TIGR01302       348 AGAD  351 (450)
T ss_pred             cCCC
Confidence            7986

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=93.89  E-value=0.3  Score=40.20  Aligned_cols=67  Identities=18%  Similarity=0.107  Sum_probs=43.0

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.+.++|+|+  -..+|-.....+     +.-+..+.+. .++.+..++++-|=++||||+-.|+.+.+.     ||++
T Consensus       227 A~~a~~~G~d~I~vsnhgG~~~d~~-----~~~~~~L~~i-~~~~~~~~~~~~vi~~GGIr~G~Dv~kala-----LGA~  295 (344)
T cd02922         227 AVLAAEYGVDGIVLSNHGGRQLDTA-----PAPIEVLLEI-RKHCPEVFDKIEVYVDGGVRRGTDVLKALC-----LGAK  295 (344)
T ss_pred             HHHHHHcCCCEEEEECCCcccCCCC-----CCHHHHHHHH-HHHHHHhCCCceEEEeCCCCCHHHHHHHHH-----cCCC
Confidence            45788999999  555551111111     2233333322 232223456788999999999999999999     7996

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=93.87  E-value=0.13  Score=40.29  Aligned_cols=59  Identities=12%  Similarity=0.030  Sum_probs=39.2

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCC--CCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDS--TSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP   80 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~g--at~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa   80 (106)
                      ++.+.++|+|+ .=..++ ++.  +.     .+.++.++++       . +.+-|=+.|||+|.+||++|++     .|+
T Consensus       154 a~~l~~aGad~i~Vd~~~-~g~~~a~-----~~~I~~i~~~-------~-~~ipIIgNGgI~s~eda~e~l~-----~GA  214 (231)
T TIGR00736       154 ALNLVDDGFDGIHVDAMY-PGKPYAD-----MDLLKILSEE-------F-NDKIIIGNNSIDDIESAKEMLK-----AGA  214 (231)
T ss_pred             HHHHHHcCCCEEEEeeCC-CCCchhh-----HHHHHHHHHh-------c-CCCcEEEECCcCCHHHHHHHHH-----hCC
Confidence            56788999999 433333 322  33     4444444433       2 2355778999999999999998     588


Q ss_pred             C
Q psy969           81 D   81 (106)
Q Consensus        81 ~   81 (106)
                      +
T Consensus       215 d  215 (231)
T TIGR00736       215 D  215 (231)
T ss_pred             C
Confidence            5

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=93.86  E-value=0.18  Score=43.26  Aligned_cols=74  Identities=11%  Similarity=0.039  Sum_probs=46.7

Q ss_pred             hhHHHhhCCCc-c---------cCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969            4 PRKVAFKGSNF-R---------TLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL   73 (106)
Q Consensus         4 ~~iai~aGadF-K---------TSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l   73 (106)
                      ++-++++|||+ |         |.-++.  +.+     ..+...+.+..+..+   ...+-|=+-|||++..|+...+. 
T Consensus       282 a~~l~~aGad~v~vgig~gsictt~~~~--~~~-----~p~~~av~~~~~~~~---~~~~~via~ggi~~~~~~~~al~-  350 (479)
T PRK07807        282 TRDLVEAGADIVKVGVGPGAMCTTRMMT--GVG-----RPQFSAVLECAAAAR---ELGAHVWADGGVRHPRDVALALA-  350 (479)
T ss_pred             HHHHHHcCCCEEEECccCCccccccccc--CCc-----hhHHHHHHHHHHHHH---hcCCcEEecCCCCCHHHHHHHHH-
Confidence            45678999999 9         333332  233     334444444332111   22477889999999999999999 


Q ss_pred             HHhhCCCCccCCCceeEec
Q psy969           74 VLIMLGPDWLNKDLFRIGA   92 (106)
Q Consensus        74 ~~~~lGa~w~~~~~~RiGt   92 (106)
                          +|++++--+..-.|+
T Consensus       351 ----~ga~~v~~g~~~ag~  365 (479)
T PRK07807        351 ----AGASNVMIGSWFAGT  365 (479)
T ss_pred             ----cCCCeeeccHhhccC
Confidence                798765444433333

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=93.73  E-value=0.3  Score=40.83  Aligned_cols=64  Identities=13%  Similarity=0.069  Sum_probs=44.1

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.+.++|+|.  -+.+|-......     +.++..+.+..+    ..++++-|=++||||+..|+.+.+.     +|++
T Consensus       242 a~~a~~~Gvd~I~VS~HGGrq~~~~-----~a~~~~L~ei~~----av~~~i~vi~dGGIr~g~Dv~KaLa-----lGAd  307 (367)
T TIGR02708       242 ADRALKAGASGIWVTNHGGRQLDGG-----PAAFDSLQEVAE----AVDKRVPIVFDSGVRRGQHVFKALA-----SGAD  307 (367)
T ss_pred             HHHHHHcCcCEEEECCcCccCCCCC-----CcHHHHHHHHHH----HhCCCCcEEeeCCcCCHHHHHHHHH-----cCCC
Confidence            46788999997  677773211112     233444443322    2466799999999999999999999     7986

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=93.67  E-value=0.38  Score=37.71  Aligned_cols=24  Identities=33%  Similarity=0.733  Sum_probs=21.6

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +-|=+.|||+|.+||.+++.     .|++
T Consensus       235 ipvi~~GGI~s~~da~~~l~-----~GAd  258 (300)
T TIGR01037       235 IPIIGVGGITSFEDALEFLM-----AGAS  258 (300)
T ss_pred             CCEEEECCCCCHHHHHHHHH-----cCCC
Confidence            67888999999999999998     6886

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=93.67  E-value=0.21  Score=41.35  Aligned_cols=64  Identities=11%  Similarity=0.045  Sum_probs=42.0

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.+.++|+|+  -..+|-......     +..+..+.+    ..+..++++-|=++||||+..|+.+.+.     +|++
T Consensus       235 A~~a~~~G~d~I~vsnhGGr~ld~~-----~~~~~~l~~----i~~a~~~~i~vi~dGGIr~g~Di~kaLa-----lGA~  300 (351)
T cd04737         235 ADVAINAGADGIWVSNHGGRQLDGG-----PASFDSLPE----IAEAVNHRVPIIFDSGVRRGEHVFKALA-----SGAD  300 (351)
T ss_pred             HHHHHHcCCCEEEEeCCCCccCCCC-----chHHHHHHH----HHHHhCCCCeEEEECCCCCHHHHHHHHH-----cCCC
Confidence            46789999999  444541111111     223333332    2233466899999999999999999999     7986

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=93.61  E-value=0.43  Score=38.37  Aligned_cols=79  Identities=19%  Similarity=0.236  Sum_probs=53.4

Q ss_pred             hhhHHHhhCCCc-ccCCC--C------CCC----CCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeec------CC
Q psy969            3 RPRKVAFKGSNF-RTLHG--R------GPD----STSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPA------GG   60 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG--~------~~~----gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaa------GG   60 (106)
                      +++.|.++|.|. --.-|  |      +|.    .-.||-. +| ..+.+++.|++.++..++  .|+||.+      +|
T Consensus       154 aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGs-lenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g  232 (338)
T cd04733         154 AARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGS-LENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGG  232 (338)
T ss_pred             HHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCC-HHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCC
Confidence            467788899998 54333  2      221    0112111 44 477888888888887875  5999998      56


Q ss_pred             CCCHHHHHHHHHHHHhhCCCCccC
Q psy969           61 ISTFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        61 Irt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                      . |.+++++++...++ +|.+|++
T Consensus       233 ~-~~eea~~ia~~Le~-~Gvd~ie  254 (338)
T cd04733         233 F-TEEDALEVVEALEE-AGVDLVE  254 (338)
T ss_pred             C-CHHHHHHHHHHHHH-cCCCEEE
Confidence            5 78999999887655 6889875

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=93.60  E-value=0.48  Score=38.00  Aligned_cols=79  Identities=19%  Similarity=0.274  Sum_probs=53.0

Q ss_pred             hhhHHHhhCCCc-ccCC--CC------CC----CCCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeec------CC
Q psy969            3 RPRKVAFKGSNF-RTLH--GR------GP----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPA------GG   60 (106)
Q Consensus         3 ~~~iai~aGadF-KTST--G~------~~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaa------GG   60 (106)
                      +++.|.++|.|. +-.-  ||      +|    ..-.||.. ++ ..+.+.+.+++.++.+++  .|+||.+      +|
T Consensus       159 aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgs-l~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g  237 (336)
T cd02932         159 AARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGS-LENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGG  237 (336)
T ss_pred             HHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCC-HHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCC
Confidence            467888999999 6543  43      11    11112211 33 477777777777777854  6999988      55


Q ss_pred             CCCHHHHHHHHHHHHhhCCCCccC
Q psy969           61 ISTFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        61 Irt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                      . +.+++++++...++ +|.+|++
T Consensus       238 ~-~~~e~~~ia~~Le~-~gvd~ie  259 (336)
T cd02932         238 W-DLEDSVELAKALKE-LGVDLID  259 (336)
T ss_pred             C-CHHHHHHHHHHHHH-cCCCEEE
Confidence            5 68999999887765 6899986

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=93.45  E-value=0.45  Score=35.74  Aligned_cols=63  Identities=21%  Similarity=0.236  Sum_probs=38.1

Q ss_pred             hHHHhhCCCc-cc-CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-RT-LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-KT-STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.+.|+|| ++ +.|+.+....  .. ..+...+.+ ++   +..  ++-|=+.|||+|.+++.++++     +|++
T Consensus       137 ~~a~~~G~d~i~~~~~g~t~~~~~--~~-~~~~~~l~~-i~---~~~--~ipvia~GGI~~~~~~~~~l~-----~Gad  201 (219)
T cd04729         137 LNAAKLGFDIIGTTLSGYTEETAK--TE-DPDFELLKE-LR---KAL--GIPVIAEGRINSPEQAAKALE-----LGAD  201 (219)
T ss_pred             HHHHHcCCCEEEccCccccccccC--CC-CCCHHHHHH-HH---Hhc--CCCEEEeCCCCCHHHHHHHHH-----CCCC
Confidence            4677889999 75 4565332111  00 112333222 22   222  355668999999999999999     6885

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=93.43  E-value=0.14  Score=41.10  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=29.8

Q ss_pred             HHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        41 ~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.+.++..++++-|=++|||.|.+||.+|+.     +|++
T Consensus       230 ~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~-----aGA~  265 (310)
T PRK02506        230 NVRAFYQRLNPSIQIIGTGGVKTGRDAFEHIL-----CGAS  265 (310)
T ss_pred             HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence            34455556677899999999999999999998     7996

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=93.30  E-value=0.46  Score=35.22  Aligned_cols=56  Identities=20%  Similarity=0.230  Sum_probs=36.3

Q ss_pred             hhHHHhhCCCcccCCCCCC-----CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969            4 PRKVAFKGSNFRTLHGRGP-----DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL   73 (106)
Q Consensus         4 ~~iai~aGadFKTSTG~~~-----~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l   73 (106)
                      ++...++|+||-|-++...     .+..     .+.++.+++         ..++-|.+.|||+|++++.++++.
T Consensus       144 ~~~l~~~Gvd~i~v~~~~~~~~~~~~~~-----~~~~~~i~~---------~~~ipvi~~Ggi~~~~d~~~~l~~  204 (231)
T cd02801         144 AKALEDAGASALTVHGRTREQRYSGPAD-----WDYIAEIKE---------AVSIPVIANGDIFSLEDALRCLEQ  204 (231)
T ss_pred             HHHHHHhCCCEEEECCCCHHHcCCCCCC-----HHHHHHHHh---------CCCCeEEEeCCCCCHHHHHHHHHh
Confidence            3456678999933333321     1233     344444332         246889999999999999999983

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=93.21  E-value=0.48  Score=38.36  Aligned_cols=64  Identities=16%  Similarity=0.157  Sum_probs=47.7

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.|+++|||+ .=-      +-+     +++++...+.+++    ..+++-+=+|||| |.+.+.+|.+     .|+|  
T Consensus       210 ~eA~~~GaD~I~LD------n~~-----~e~l~~av~~~~~----~~~~i~leAsGGI-t~~ni~~ya~-----tGvD--  266 (288)
T PRK07428        210 QEALEYGADIIMLD------NMP-----VDLMQQAVQLIRQ----QNPRVKIEASGNI-TLETIRAVAE-----TGVD--  266 (288)
T ss_pred             HHHHHcCCCEEEEC------CCC-----HHHHHHHHHHHHh----cCCCeEEEEECCC-CHHHHHHHHH-----cCCC--
Confidence            3577889999 532      345     7777776665543    2467899999999 7999999998     7996  


Q ss_pred             CCCceeEeccchH
Q psy969           84 NKDLFRIGASSLL   96 (106)
Q Consensus        84 ~~~~~RiGtSs~~   96 (106)
                           +|-+|++.
T Consensus       267 -----~Isvgsl~  274 (288)
T PRK07428        267 -----YISSSAPI  274 (288)
T ss_pred             -----EEEEchhh
Confidence                 88777654

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=93.06  E-value=0.35  Score=39.19  Aligned_cols=69  Identities=23%  Similarity=0.223  Sum_probs=39.3

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCC-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTS-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++.++++|||| +..-|=+....+     .+.|-...+..+.++.++      .++-|=++|||++..++.+.+.     
T Consensus       149 A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~------~~vpVIA~GGI~~~~di~kAla-----  217 (325)
T cd00381         149 ARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARD------YGVPVIADGGIRTSGDIVKALA-----  217 (325)
T ss_pred             HHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhh------cCCcEEecCCCCCHHHHHHHHH-----
Confidence            45688999999 852110000001     011112233333333321      1355669999999999999999     


Q ss_pred             CCCCcc
Q psy969           78 LGPDWL   83 (106)
Q Consensus        78 lGa~w~   83 (106)
                      +|++.+
T Consensus       218 ~GA~~V  223 (325)
T cd00381         218 AGADAV  223 (325)
T ss_pred             cCCCEE
Confidence            798744

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=92.90  E-value=0.66  Score=36.47  Aligned_cols=81  Identities=17%  Similarity=0.250  Sum_probs=52.4

Q ss_pred             hhhHHHhhCCCc---ccCCCC------CCC----CCCCCCCCchHHHHHHHHHHHHhhhcCC--ceeEeecCC-----CC
Q psy969            3 RPRKVAFKGSNF---RTLHGR------GPD----STSYGNVCNTCGIIMCSAIKHFHKLSGK--KIGLKPAGG-----IS   62 (106)
Q Consensus         3 ~~~iai~aGadF---KTSTG~------~~~----gat~~~~~~~~v~lm~~~i~~~~~~~~~--~vgiKaaGG-----Ir   62 (106)
                      +++.|.++|.|.   .-..||      .|.    .-.||..-....+++++.+++.++..++  .+++|.+..     --
T Consensus       146 aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~  225 (327)
T cd02803         146 AARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGL  225 (327)
T ss_pred             HHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCC
Confidence            567888999999   445565      221    1112222123477777777777777754  699999852     14


Q ss_pred             CHHHHHHHHHHHHhhCCCCccC
Q psy969           63 TFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        63 t~~~a~~~i~l~~~~lGa~w~~   84 (106)
                      +.++++++++..++ +|.+|++
T Consensus       226 ~~~e~~~la~~l~~-~G~d~i~  246 (327)
T cd02803         226 TLEEAIEIAKALEE-AGVDALH  246 (327)
T ss_pred             CHHHHHHHHHHHHH-cCCCEEE
Confidence            78888888776543 6899873

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=92.86  E-value=0.38  Score=38.29  Aligned_cols=61  Identities=16%  Similarity=0.087  Sum_probs=47.4

Q ss_pred             HHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            6 KVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         6 iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      -|..+|+||  -|-.||...+.+   |=.+|..+|++..       ..++-+=|=|.+.|+++|.+-++     +|+.
T Consensus       142 ~a~~~G~D~IGTTLsGYT~~~~~---~~~pDf~lvk~l~-------~~~~~vIAEGr~~tP~~Ak~a~~-----~Ga~  204 (229)
T COG3010         142 NAHKLGFDIIGTTLSGYTGYTEK---PTEPDFQLVKQLS-------DAGCRVIAEGRYNTPEQAKKAIE-----IGAD  204 (229)
T ss_pred             HHHHcCCcEEecccccccCCCCC---CCCCcHHHHHHHH-------hCCCeEEeeCCCCCHHHHHHHHH-----hCCe
Confidence            467789999  889999764433   2255788877653       36778889999999999999999     6984

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=92.74  E-value=0.52  Score=39.17  Aligned_cols=28  Identities=29%  Similarity=0.482  Sum_probs=24.9

Q ss_pred             CceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969           51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus        51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      .++-|=++|||+|..|+.+.+.     +|++++
T Consensus       284 ~~i~viasGGI~~g~Dv~kala-----LGAd~V  311 (392)
T cd02808         284 DRVSLIASGGLRTGADVAKALA-----LGADAV  311 (392)
T ss_pred             CCCeEEEECCCCCHHHHHHHHH-----cCCCee
Confidence            4688889999999999999999     799854

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=92.66  E-value=0.45  Score=38.57  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=23.4

Q ss_pred             CceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .++-|=++||||+.+++.+.+.     +|++
T Consensus       253 ~~ipVIasGGI~~~~di~kaLa-----lGAd  278 (333)
T TIGR02151       253 PDAPIIASGGLRTGLDVAKAIA-----LGAD  278 (333)
T ss_pred             CCCeEEEECCCCCHHHHHHHHH-----hCCC
Confidence            4578889999999999999999     6986

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=92.63  E-value=0.37  Score=36.02  Aligned_cols=64  Identities=19%  Similarity=0.242  Sum_probs=45.1

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.|+++|+|. .==+      -+     +++++-..+.++.    .++++.|=+|||| |.+...+|.+     .|.|  
T Consensus        94 ~ea~~~g~d~I~lD~------~~-----~~~~~~~v~~l~~----~~~~v~ie~SGGI-~~~ni~~ya~-----~gvD--  150 (169)
T PF01729_consen   94 EEALEAGADIIMLDN------MS-----PEDLKEAVEELRE----LNPRVKIEASGGI-TLENIAEYAK-----TGVD--  150 (169)
T ss_dssp             HHHHHTT-SEEEEES-------C-----HHHHHHHHHHHHH----HTTTSEEEEESSS-STTTHHHHHH-----TT-S--
T ss_pred             HHHHHhCCCEEEecC------cC-----HHHHHHHHHHHhh----cCCcEEEEEECCC-CHHHHHHHHh-----cCCC--
Confidence            4577888888 4222      25     7787777776654    3678999999999 5678888888     7986  


Q ss_pred             CCCceeEeccchH
Q psy969           84 NKDLFRIGASSLL   96 (106)
Q Consensus        84 ~~~~~RiGtSs~~   96 (106)
                           .|+++++.
T Consensus       151 -----~isvg~~~  158 (169)
T PF01729_consen  151 -----VISVGSLT  158 (169)
T ss_dssp             -----EEEECHHH
T ss_pred             -----EEEcChhh
Confidence                 88777653

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=92.56  E-value=0.77  Score=37.68  Aligned_cols=26  Identities=27%  Similarity=0.399  Sum_probs=23.2

Q ss_pred             CceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .++-|=++||||+..|+.+++.     +|++
T Consensus       260 ~~ipvia~GGI~~~~dv~k~l~-----~GAd  285 (352)
T PRK05437        260 PDLPIIASGGIRNGLDIAKALA-----LGAD  285 (352)
T ss_pred             CCCeEEEECCCCCHHHHHHHHH-----cCCC
Confidence            3577889999999999999999     7986

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=92.46  E-value=0.57  Score=36.58  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=22.3

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++-|=+.|||+|.+++.+++.     +|++
T Consensus       231 ~ipii~~GGI~~~~da~~~l~-----~GAd  255 (296)
T cd04740         231 EIPIIGVGGIASGEDALEFLM-----AGAS  255 (296)
T ss_pred             CCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence            467888999999999999998     7986

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=92.45  E-value=0.8  Score=37.84  Aligned_cols=37  Identities=22%  Similarity=0.447  Sum_probs=27.2

Q ss_pred             HHHHHhhhcC-CceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969           41 AIKHFHKLSG-KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus        41 ~i~~~~~~~~-~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      .|++.++..+ +++-|=++|||.|.+||.+|+.     +|++-
T Consensus       241 ~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~-----aGA~~  278 (420)
T PRK08318        241 MVAEIARDPETRGLPISGIGGIETWRDAAEFIL-----LGAGT  278 (420)
T ss_pred             HHHHHHhccccCCCCEEeecCcCCHHHHHHHHH-----hCCCh
Confidence            3334444343 3677888999999999999998     79963

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=92.37  E-value=0.79  Score=38.20  Aligned_cols=79  Identities=22%  Similarity=0.172  Sum_probs=45.5

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCC-----CCCCchHHHHHHHHHHHHhhhc-CCceeEeecCCCCCHHHHHHHHHHHHh
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSY-----GNVCNTCGIIMCSAIKHFHKLS-GKKIGLKPAGGISTFEDSVRWIYLVLI   76 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~-----~~~~~~~v~lm~~~i~~~~~~~-~~~vgiKaaGGIrt~~~a~~~i~l~~~   76 (106)
                      ++.++++|||. +-+-|-+....|.     +-|.+..+....++.++|.+.. +..+-|=++|||++..|+.+-+.    
T Consensus       201 A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAla----  276 (368)
T PRK08649        201 ALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIA----  276 (368)
T ss_pred             HHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHH----
Confidence            45577899999 8753321111110     1222223333333323332222 23588889999999999999999    


Q ss_pred             hCCCCccCCCc
Q psy969           77 MLGPDWLNKDL   87 (106)
Q Consensus        77 ~lGa~w~~~~~   87 (106)
                       +|++.+.=+.
T Consensus       277 -lGAd~Vm~Gs  286 (368)
T PRK08649        277 -CGADAVMLGS  286 (368)
T ss_pred             -cCCCeecccc
Confidence             7998654443

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=92.36  E-value=0.65  Score=38.32  Aligned_cols=64  Identities=19%  Similarity=0.139  Sum_probs=39.9

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.+.++|+|.  -..+|--.-.-.     +..+..+.+..+    ..++++-|=++||||+-.|+...+.     ||++
T Consensus       239 a~~~~~~G~~~i~vs~hGGr~~d~~-----~~~~~~L~~i~~----~~~~~~~i~~dgGir~g~Dv~kala-----LGA~  304 (356)
T PF01070_consen  239 AKRAVDAGVDGIDVSNHGGRQLDWG-----PPTIDALPEIRA----AVGDDIPIIADGGIRRGLDVAKALA-----LGAD  304 (356)
T ss_dssp             HHHHHHTT-SEEEEESGTGTSSTTS------BHHHHHHHHHH----HHTTSSEEEEESS--SHHHHHHHHH-----TT-S
T ss_pred             HHHHHhcCCCEEEecCCCcccCccc-----cccccccHHHHh----hhcCCeeEEEeCCCCCHHHHHHHHH-----cCCC
Confidence            46788999998  555652211111     334444443322    2478999999999999999999999     7996

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>PLN02979 glycolate oxidase

Probab=92.35  E-value=0.69  Score=38.95  Aligned_cols=64  Identities=17%  Similarity=0.135  Sum_probs=43.8

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++.++++|+|+  -...|-......     +..+..+.+..+    ..++++-|=++||||+-.|+..-+.     ||++
T Consensus       237 A~~a~~~Gvd~I~VsnhGGrqld~~-----p~t~~~L~ei~~----~~~~~~~Vi~dGGIr~G~Di~KALA-----LGAd  302 (366)
T PLN02979        237 ARIAIQAGAAGIIVSNHGARQLDYV-----PATISALEEVVK----ATQGRIPVFLDGGVRRGTDVFKALA-----LGAS  302 (366)
T ss_pred             HHHHHhcCCCEEEECCCCcCCCCCc-----hhHHHHHHHHHH----HhCCCCeEEEeCCcCcHHHHHHHHH-----cCCC
Confidence            46789999999  555552222222     333444444322    2466788999999999999999999     7996

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=92.33  E-value=0.13  Score=42.14  Aligned_cols=20  Identities=45%  Similarity=0.647  Sum_probs=18.5

Q ss_pred             ecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           57 PAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        57 aaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.|||.|++++..+++     +|++
T Consensus       210 AeGGI~TPedaa~vme-----~GAd  229 (293)
T PRK04180        210 AAGGIATPADAALMMQ-----LGAD  229 (293)
T ss_pred             EeCCCCCHHHHHHHHH-----hCCC
Confidence            7799999999999999     7986

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=92.17  E-value=0.27  Score=41.22  Aligned_cols=80  Identities=24%  Similarity=0.321  Sum_probs=41.5

Q ss_pred             HHHhhCCCcccCCCCC-CCCCCC----CCCCchHHHHHHHHHHHHhh-hcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969            6 KVAFKGSNFRTLHGRG-PDSTSY----GNVCNTCGIIMCSAIKHFHK-LSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         6 iai~aGadFKTSTG~~-~~gat~----~~~~~~~v~lm~~~i~~~~~-~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG   79 (106)
                      .+.++|+||-|=-|.. ..|++.    .++-+.-...+.++-+.+.+ ...++|-+=++||++|..|+...+.     ||
T Consensus       222 ~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kala-----LG  296 (368)
T PF01645_consen  222 GAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALA-----LG  296 (368)
T ss_dssp             HHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHH-----CT
T ss_pred             hhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHh-----cC
Confidence            3778999995555543 234441    11111123333333322221 1356799999999999999999999     89


Q ss_pred             CCccCCCceeEeccch
Q psy969           80 PDWLNKDLFRIGASSL   95 (106)
Q Consensus        80 a~w~~~~~~RiGtSs~   95 (106)
                      +|     .+-||+..+
T Consensus       297 AD-----~v~igt~~l  307 (368)
T PF01645_consen  297 AD-----AVYIGTAAL  307 (368)
T ss_dssp             -S-----EEE-SHHHH
T ss_pred             CC-----eeEecchhh
Confidence            96     344555443

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=92.15  E-value=0.68  Score=36.37  Aligned_cols=25  Identities=36%  Similarity=0.619  Sum_probs=22.1

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++-|=+.|||+|.++|.+++.     +|++
T Consensus       234 ~ipvi~~GGI~~~~da~~~l~-----aGAd  258 (301)
T PRK07259        234 DIPIIGMGGISSAEDAIEFIM-----AGAS  258 (301)
T ss_pred             CCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence            467888999999999999998     6886

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=92.15  E-value=0.65  Score=35.23  Aligned_cols=24  Identities=42%  Similarity=0.674  Sum_probs=21.2

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +-|=+.|||++.+++.++++     .|++
T Consensus        72 ~pv~~~GGI~s~~d~~~~l~-----~G~~   95 (243)
T cd04731          72 IPLTVGGGIRSLEDARRLLR-----AGAD   95 (243)
T ss_pred             CCEEEeCCCCCHHHHHHHHH-----cCCc
Confidence            56779999999999999998     6875

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=92.08  E-value=0.55  Score=39.48  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=24.0

Q ss_pred             CCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969           50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus        50 ~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      ..++-|=..|||.|.+||.+||.     +||+-
T Consensus       268 ~~~ipIiGvGGI~s~~Da~e~i~-----aGAs~  295 (385)
T PLN02495        268 PEDRSLSGIGGVETGGDAAEFIL-----LGADT  295 (385)
T ss_pred             cCCCcEEEECCCCCHHHHHHHHH-----hCCCc
Confidence            34577889999999999999999     79963

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=91.76  E-value=0.44  Score=39.24  Aligned_cols=69  Identities=17%  Similarity=0.138  Sum_probs=41.8

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCC----CCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML   78 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~----~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l   78 (106)
                      ++.++++|||. +-|-|=+....|..    ......+..+.+    ..+..  ++-|=+.||||+..|+.+.+.     +
T Consensus       151 a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~e----v~~a~--~~pVIadGGIr~~~Di~KALa-----~  219 (321)
T TIGR01306       151 VRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRW----CAKAA--RKPIIADGGIRTHGDIAKSIR-----F  219 (321)
T ss_pred             HHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHH----HHHhc--CCeEEEECCcCcHHHHHHHHH-----c
Confidence            56788999999 97755222111100    000112222222    22222  477889999999999999999     7


Q ss_pred             CCCcc
Q psy969           79 GPDWL   83 (106)
Q Consensus        79 Ga~w~   83 (106)
                      |++.+
T Consensus       220 GAd~V  224 (321)
T TIGR01306       220 GASMV  224 (321)
T ss_pred             CCCEE
Confidence            98743

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=91.74  E-value=0.79  Score=35.50  Aligned_cols=73  Identities=11%  Similarity=0.132  Sum_probs=46.9

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      ++.+.++|+|+ --++++....+.        .+.+.+    .+    .++-|=+.|||.|.+|+.++++     .|++ 
T Consensus       158 a~~l~~aG~d~ihv~~~~~g~~ad--------~~~I~~----i~----~~ipVIgnGgI~s~eda~~~l~-----~GaD-  215 (233)
T cd02911         158 ARLIEKAGADIIHVDAMDPGNHAD--------LKKIRD----IS----TELFIIGNNSVTTIESAKEMFS-----YGAD-  215 (233)
T ss_pred             HHHHHHhCCCEEEECcCCCCCCCc--------HHHHHH----hc----CCCEEEEECCcCCHHHHHHHHH-----cCCC-
Confidence            46678899999 666766432233        333332    21    3466778999999999999998     5875 


Q ss_pred             cCCCceeEeccchHHHHHHHH
Q psy969           83 LNKDLFRIGASSLLNNILQEL  103 (106)
Q Consensus        83 ~~~~~~RiGtSs~~~~l~~~l  103 (106)
                          ..-||.. ..+-+.++|
T Consensus       216 ----~VmiGR~-~~p~~~~~~  231 (233)
T cd02911         216 ----MVSVARA-SLPENIEWL  231 (233)
T ss_pred             ----EEEEcCC-CCchHHHHh
Confidence                4456665 444444444

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=91.64  E-value=1.1  Score=37.58  Aligned_cols=70  Identities=21%  Similarity=0.185  Sum_probs=42.8

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCC-----CCCCchHHHHHHHHHHHHhhhcC-CceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSY-----GNVCNTCGIIMCSAIKHFHKLSG-KKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~-----~~~~~~~v~lm~~~i~~~~~~~~-~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      +.++++|+|+ .-++|=.  ..+.     +-|=.+.+.-..++.++|.+..+ +.+-|=++|||++..|+.+.+.     
T Consensus       203 ~~~~~aGaDgV~~G~gg~--~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlA-----  275 (369)
T TIGR01304       203 LHLMRTGAAGVIVGPGGA--NTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIA-----  275 (369)
T ss_pred             HHHHHcCCCEEEECCCCC--cccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHH-----
Confidence            4567789999 7222110  0110     01102234444444455555565 3588899999999999999999     


Q ss_pred             CCCC
Q psy969           78 LGPD   81 (106)
Q Consensus        78 lGa~   81 (106)
                      +|++
T Consensus       276 lGAd  279 (369)
T TIGR01304       276 CGAD  279 (369)
T ss_pred             cCCC
Confidence            7986

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=91.53  E-value=0.98  Score=37.86  Aligned_cols=64  Identities=17%  Similarity=0.135  Sum_probs=43.4

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++.++++|+|.  -..+|=......     +..+..+.+..+    ..++++-|=++||||+-.|+..-+.     ||++
T Consensus       238 A~~a~~~Gvd~I~VsnhGGrqld~~-----~~t~~~L~ei~~----av~~~~~vi~dGGIr~G~Dv~KALA-----LGA~  303 (367)
T PLN02493        238 ARIAIQAGAAGIIVSNHGARQLDYV-----PATISALEEVVK----ATQGRIPVFLDGGVRRGTDVFKALA-----LGAS  303 (367)
T ss_pred             HHHHHHcCCCEEEECCCCCCCCCCc-----hhHHHHHHHHHH----HhCCCCeEEEeCCcCcHHHHHHHHH-----cCCC
Confidence            45789999999  544542211111     333444444332    2467788999999999999999999     7996

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=91.41  E-value=0.93  Score=34.61  Aligned_cols=64  Identities=14%  Similarity=0.117  Sum_probs=43.9

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      ..+.+.|+|| |=   |-.....     ++.++.+++.       .++.+-+=+.||| +.+.+.+|++     +|++  
T Consensus       118 ~~A~~~Gad~vk~---Fpa~~~G-----~~~l~~l~~~-------~~~~ipvvaiGGI-~~~n~~~~~~-----aGa~--  174 (206)
T PRK09140        118 FAALRAGAQALKL---FPASQLG-----PAGIKALRAV-------LPPDVPVFAVGGV-TPENLAPYLA-----AGAA--  174 (206)
T ss_pred             HHHHHcCCCEEEE---CCCCCCC-----HHHHHHHHhh-------cCCCCeEEEECCC-CHHHHHHHHH-----CCCe--
Confidence            3577889999 93   3212233     4455555433       2335889999999 8899999999     7995  


Q ss_pred             CCCceeEeccchH
Q psy969           84 NKDLFRIGASSLL   96 (106)
Q Consensus        84 ~~~~~RiGtSs~~   96 (106)
                           .++.+|.+
T Consensus       175 -----~vav~s~l  182 (206)
T PRK09140        175 -----GFGLGSAL  182 (206)
T ss_pred             -----EEEEehHh
Confidence                 88766654

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=91.27  E-value=0.5  Score=37.78  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=28.0

Q ss_pred             chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.++-|++.         -.+-|-.-|||||.+++..|++     +|.+
T Consensus        64 ~~~i~~i~~~---------~~~~vQvGGGIRs~~~v~~ll~-----~G~~   99 (241)
T COG0106          64 LEAIKEILEA---------TDVPVQVGGGIRSLEDVEALLD-----AGVA   99 (241)
T ss_pred             HHHHHHHHHh---------CCCCEEeeCCcCCHHHHHHHHH-----CCCC
Confidence            5666666654         2455666799999999999999     7986

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=91.18  E-value=1  Score=36.37  Aligned_cols=25  Identities=32%  Similarity=0.438  Sum_probs=23.0

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++-|=++||||+..|+.+.+.     +|++
T Consensus       255 ~ipIiasGGIr~~~dv~kal~-----lGAd  279 (326)
T cd02811         255 DLPLIASGGIRNGLDIAKALA-----LGAD  279 (326)
T ss_pred             CCcEEEECCCCCHHHHHHHHH-----hCCC
Confidence            688999999999999999999     6986

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=91.14  E-value=0.88  Score=36.63  Aligned_cols=60  Identities=17%  Similarity=0.078  Sum_probs=44.8

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.|.++|+|| .-.      +-+     ++.++...+.+       ++++-+=+|||| |.+.+.+|.+     .|++  
T Consensus       203 ~eA~~~gaD~I~LD------~~~-----~e~l~~~v~~~-------~~~i~leAsGGI-t~~ni~~~a~-----tGvD--  256 (277)
T PRK05742        203 RQALAAGADIVMLD------ELS-----LDDMREAVRLT-------AGRAKLEASGGI-NESTLRVIAE-----TGVD--  256 (277)
T ss_pred             HHHHHcCCCEEEEC------CCC-----HHHHHHHHHHh-------CCCCcEEEECCC-CHHHHHHHHH-----cCCC--
Confidence            4577889999 542      345     77666655443       367889999999 6999999999     7996  


Q ss_pred             CCCceeEeccch
Q psy969           84 NKDLFRIGASSL   95 (106)
Q Consensus        84 ~~~~~RiGtSs~   95 (106)
                           .|.+|++
T Consensus       257 -----~Isvg~l  263 (277)
T PRK05742        257 -----YISIGAM  263 (277)
T ss_pred             -----EEEEChh
Confidence                 7777664

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=90.86  E-value=1.3  Score=34.74  Aligned_cols=57  Identities=21%  Similarity=0.148  Sum_probs=34.4

Q ss_pred             CCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           11 GSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        11 GadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      |..| -|++|+......    ..+++....+.+++   ..+.++  =+-|||+|.+++.++++     +|+|
T Consensus       165 gfiy~vs~~G~TG~~~~----~~~~~~~~i~~lr~---~~~~pi--~vgfGI~~~e~~~~~~~-----~GAD  222 (256)
T TIGR00262       165 GFVYLVSRAGVTGARNR----AASALNELVKRLKA---YSAKPV--LVGFGISKPEQVKQAID-----AGAD  222 (256)
T ss_pred             CCEEEEECCCCCCCccc----CChhHHHHHHHHHh---hcCCCE--EEeCCCCCHHHHHHHHH-----cCCC
Confidence            4556 787777533211    13333333333333   234444  45789999999999999     7886

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=90.82  E-value=0.77  Score=36.07  Aligned_cols=48  Identities=19%  Similarity=0.184  Sum_probs=32.7

Q ss_pred             ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           15 RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        15 KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      --|.|++ .+.+     ++.++.+++..        +.+-|=.-|||||.+|+.++++     +|++
T Consensus       156 E~gs~~g-~~v~-----~e~i~~v~~~~--------~~~pl~vGGGIrs~e~a~~l~~-----aGAD  203 (223)
T TIGR01768       156 EAGSGAP-EPVP-----PELVAEVKKVL--------DKARLFVGGGIRSVEKAREMAE-----AGAD  203 (223)
T ss_pred             EecCCCC-CCcC-----HHHHHHHHHHc--------CCCCEEEecCCCCHHHHHHHHH-----cCCC
Confidence            3455553 3355     56676666542        1355555899999999999999     6986

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=90.73  E-value=0.77  Score=35.47  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=27.1

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccch
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL   95 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~   95 (106)
                      .+-|=++|||||.+|+.++++     +|++     ..-||+...
T Consensus        73 ~~pv~~gGGIrs~edv~~l~~-----~G~~-----~vivGtaa~  106 (228)
T PRK04128         73 GLKVQVGGGLRTYESIKDAYE-----IGVE-----NVIIGTKAF  106 (228)
T ss_pred             CCCEEEcCCCCCHHHHHHHHH-----CCCC-----EEEECchhc
Confidence            466789999999999999999     6885     335687655

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]

Probab=90.45  E-value=0.8  Score=39.93  Aligned_cols=78  Identities=23%  Similarity=0.199  Sum_probs=47.9

Q ss_pred             HHhhCCCcccCCCCC-CCCCCC-------CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969            7 VAFKGSNFRTLHGRG-PDSTSY-------GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML   78 (106)
Q Consensus         7 ai~aGadFKTSTG~~-~~gat~-------~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l   78 (106)
                      +.+++|||-|=.|+. ..||+.       |.|=...+..--+.+...  ...+++.|=++||+||..|+..-+.     |
T Consensus       323 vakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~--glRd~v~l~~~Ggl~Tg~DVaka~a-----L  395 (485)
T COG0069         323 VAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLN--GLRDKVKLIADGGLRTGADVAKAAA-----L  395 (485)
T ss_pred             hhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHc--CCcceeEEEecCCccCHHHHHHHHH-----h
Confidence            678999996666763 345551       111111122222222211  1357899999999999999999988     7


Q ss_pred             CCCccCCCceeEeccchH
Q psy969           79 GPDWLNKDLFRIGASSLL   96 (106)
Q Consensus        79 Ga~w~~~~~~RiGtSs~~   96 (106)
                      |+||     |-|||-.++
T Consensus       396 GAd~-----v~~gTa~li  408 (485)
T COG0069         396 GADA-----VGFGTAALV  408 (485)
T ss_pred             Ccch-----hhhchHHHH
Confidence            9974     455554443

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=90.41  E-value=0.86  Score=39.37  Aligned_cols=63  Identities=13%  Similarity=0.143  Sum_probs=41.0

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +++..+++|+|+ --.   ..++.+     .-    +.+.|+..++..+.++-|++ |-|-|.++|+.+++     +|++
T Consensus       246 ra~~Lv~aGvd~i~vd---~a~g~~-----~~----~~~~i~~ir~~~~~~~~V~a-GnV~t~e~a~~li~-----aGAd  307 (502)
T PRK07107        246 RVPALVEAGADVLCID---SSEGYS-----EW----QKRTLDWIREKYGDSVKVGA-GNVVDREGFRYLAE-----AGAD  307 (502)
T ss_pred             HHHHHHHhCCCeEeec---Cccccc-----HH----HHHHHHHHHHhCCCCceEEe-ccccCHHHHHHHHH-----cCCC
Confidence            466788899999 311   122232     11    12333333333555688888 99999999999999     7998


Q ss_pred             cc
Q psy969           82 WL   83 (106)
Q Consensus        82 w~   83 (106)
                      ++
T Consensus       308 ~I  309 (502)
T PRK07107        308 FV  309 (502)
T ss_pred             EE
Confidence            64

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=90.24  E-value=0.47  Score=37.53  Aligned_cols=39  Identities=26%  Similarity=0.243  Sum_probs=27.5

Q ss_pred             hHH-HHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           33 TCG-IIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        33 ~~v-~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .++ ..|.++.+..     ..+-+=..|||||.++|.++.+     .|+|
T Consensus       167 ~~v~~~v~~~~~~~-----~~~~LivGGGIrs~e~A~~~~~-----aGAD  206 (230)
T PF01884_consen  167 GPVPEEVIAAVKKL-----SDIPLIVGGGIRSPEQAREMAE-----AGAD  206 (230)
T ss_dssp             S-HHHHHHHHHHHS-----SSSEEEEESS--SHHHHHHHHC-----TTSS
T ss_pred             CCccHHHHHHHHhc-----CCccEEEeCCcCCHHHHHHHHH-----CCCC
Confidence            344 6666655432     5677888899999999999999     7997

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=89.84  E-value=1.5  Score=34.90  Aligned_cols=62  Identities=19%  Similarity=0.196  Sum_probs=42.7

Q ss_pred             HHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccC
Q psy969            6 KVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus         6 iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                      .|.++|+|| +-.+=      .     +++++.+.+.++.    ..+++-+=++||| +.+.+.+|.+     .|++   
T Consensus       198 ~A~~~gaD~I~ld~~------~-----p~~l~~~~~~~~~----~~~~i~i~AsGGI-~~~ni~~~~~-----~Gvd---  253 (272)
T cd01573         198 AAAEAGADILQLDKF------S-----PEELAELVPKLRS----LAPPVLLAAAGGI-NIENAAAYAA-----AGAD---  253 (272)
T ss_pred             HHHHcCCCEEEECCC------C-----HHHHHHHHHHHhc----cCCCceEEEECCC-CHHHHHHHHH-----cCCc---
Confidence            467889999 75532      2     4455544444432    1246889999999 8999999999     7996   


Q ss_pred             CCceeEeccch
Q psy969           85 KDLFRIGASSL   95 (106)
Q Consensus        85 ~~~~RiGtSs~   95 (106)
                          .|..|+.
T Consensus       254 ----~I~vsai  260 (272)
T cd01573         254 ----ILVTSAP  260 (272)
T ss_pred             ----EEEEChh
Confidence                6655543

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=89.64  E-value=1.5  Score=32.76  Aligned_cols=67  Identities=25%  Similarity=0.133  Sum_probs=40.0

Q ss_pred             hHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969            5 RKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus         5 ~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      +.+.+.|+||  -|++-..   ..     ..+...+.+..+    ..+..+-|=+.|||++.+++.++++     +|++ 
T Consensus       135 ~~~~~~g~~~i~~t~~~~~---~~-----~~~~~~~~~l~~----~~~~~~pvia~gGI~s~edi~~~~~-----~Ga~-  196 (217)
T cd00331         135 ERALALGAKIIGINNRDLK---TF-----EVDLNTTERLAP----LIPKDVILVSESGISTPEDVKRLAE-----AGAD-  196 (217)
T ss_pred             HHHHHcCCCEEEEeCCCcc---cc-----CcCHHHHHHHHH----hCCCCCEEEEEcCCCCHHHHHHHHH-----cCCC-
Confidence            4567789999  5533211   11     223344433322    2234466677899999999999999     6875 


Q ss_pred             cCCCceeEecc
Q psy969           83 LNKDLFRIGAS   93 (106)
Q Consensus        83 ~~~~~~RiGtS   93 (106)
                          ..-+|++
T Consensus       197 ----gvivGsa  203 (217)
T cd00331         197 ----AVLIGES  203 (217)
T ss_pred             ----EEEECHH
Confidence                3445554

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=89.52  E-value=1.3  Score=33.15  Aligned_cols=62  Identities=24%  Similarity=0.329  Sum_probs=40.9

Q ss_pred             HHHhhCCCc-ccCCCCCCCCCCCCCCC-chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            6 KVAFKGSNF-RTLHGRGPDSTSYGNVC-NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         6 iai~aGadF-KTSTG~~~~gat~~~~~-~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      .|.+.|+|| |-   | |. .+   ++ ++-++.++..       . +.+-|=|.||| |.+.+.+|++     +|+   
T Consensus       120 ~A~~~Gadyv~~---F-pt-~~---~~G~~~l~~~~~~-------~-~~ipvvaiGGI-~~~n~~~~l~-----aGa---  174 (187)
T PRK07455        120 TAWQAGASCVKV---F-PV-QA---VGGADYIKSLQGP-------L-GHIPLIPTGGV-TLENAQAFIQ-----AGA---  174 (187)
T ss_pred             HHHHCCCCEEEE---C-cC-Cc---ccCHHHHHHHHhh-------C-CCCcEEEeCCC-CHHHHHHHHH-----CCC---
Confidence            466789999 95   4 32 11   11 3333333322       1 35789999999 7799999999     798   


Q ss_pred             CCCceeEeccchH
Q psy969           84 NKDLFRIGASSLL   96 (106)
Q Consensus        84 ~~~~~RiGtSs~~   96 (106)
                          .-++.+|.+
T Consensus       175 ----~~vav~s~i  183 (187)
T PRK07455        175 ----IAVGLSGQL  183 (187)
T ss_pred             ----eEEEEehhc
Confidence                478777654

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=89.51  E-value=1.4  Score=37.87  Aligned_cols=64  Identities=11%  Similarity=0.035  Sum_probs=41.3

Q ss_pred             hhHHHhhCCCc-c--------cCCCCC-CCC-CCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969            4 PRKVAFKGSNF-R--------TLHGRG-PDS-TSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY   72 (106)
Q Consensus         4 ~~iai~aGadF-K--------TSTG~~-~~g-at~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~   72 (106)
                      ++.++++|||+ |        +.|-.. ..| .+     ...+....+++++      ..+-|=|.||||+..|...-+.
T Consensus       280 ~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~-----~~a~~~~~~~~~~------~~~~viadGgi~~~~di~kala  348 (475)
T TIGR01303       280 VRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQ-----FSAVLECAAEARK------LGGHVWADGGVRHPRDVALALA  348 (475)
T ss_pred             HHHHHHhCCCEEEECCcCCccccCccccCCCCch-----HHHHHHHHHHHHH------cCCcEEEeCCCCCHHHHHHHHH
Confidence            45678999999 9        222211 111 22     3344444444432      2477889999999999999999


Q ss_pred             HHHhhCCCCcc
Q psy969           73 LVLIMLGPDWL   83 (106)
Q Consensus        73 l~~~~lGa~w~   83 (106)
                           +|++++
T Consensus       349 -----~GA~~v  354 (475)
T TIGR01303       349 -----AGASNV  354 (475)
T ss_pred             -----cCCCEE
Confidence                 799754

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=89.50  E-value=1.3  Score=36.27  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=20.4

Q ss_pred             eeEe--ecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           53 IGLK--PAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        53 vgiK--aaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +-|=  +.|||.|++++..+++     +|++
T Consensus       198 iPVV~fAiGGI~TPedAa~~me-----lGAd  223 (287)
T TIGR00343       198 LPVVNFAAGGVATPADAALMMQ-----LGAD  223 (287)
T ss_pred             CCEEEeccCCCCCHHHHHHHHH-----cCCC
Confidence            4444  7899999999999999     7986

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=89.45  E-value=2  Score=35.52  Aligned_cols=80  Identities=15%  Similarity=0.100  Sum_probs=53.1

Q ss_pred             hhhHHHhhCCCc---ccCCCCC------C----CCCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeecC-------
Q psy969            3 RPRKVAFKGSNF---RTLHGRG------P----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPAG-------   59 (106)
Q Consensus         3 ~~~iai~aGadF---KTSTG~~------~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaaG-------   59 (106)
                      +++.|.++|.|.   .-..||-      |    ..--||.. ++ ..+++++.++..++.+++  .|+||.++       
T Consensus       149 AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGs-lenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~  227 (361)
T cd04747         149 AAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGS-LAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYT  227 (361)
T ss_pred             HHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccc
Confidence            567888899998   4455531      1    11112211 44 588888888888888864  59999995       


Q ss_pred             --CCCCHHHHHHHHHHHHhhCCCCccC
Q psy969           60 --GISTFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        60 --GIrt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                        |-.|+++..+++...++ +|.++++
T Consensus       228 ~~~g~~~~e~~~~~~~l~~-~gvd~i~  253 (361)
T cd04747         228 ARLADTPDELEALLAPLVD-AGVDIFH  253 (361)
T ss_pred             cCCCCCHHHHHHHHHHHHH-cCCCEEE
Confidence              12688888888776544 5877653

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=89.35  E-value=0.85  Score=37.58  Aligned_cols=27  Identities=26%  Similarity=0.404  Sum_probs=23.2

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      ++-|=+.|||++..|+.+.+.     +|++.+
T Consensus       201 ~ipVIAdGGI~~~~Di~KaLa-----~GA~aV  227 (326)
T PRK05458        201 RKPIIADGGIRTHGDIAKSIR-----FGATMV  227 (326)
T ss_pred             CCCEEEeCCCCCHHHHHHHHH-----hCCCEE
Confidence            366789999999999999999     698744

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=89.30  E-value=1.1  Score=34.61  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.2

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +-|=+.|||||+|++..+++     +|++
T Consensus        76 ~pv~vgGGirs~edv~~~l~-----~Ga~   99 (241)
T PRK14024         76 VKVELSGGIRDDESLEAALA-----TGCA   99 (241)
T ss_pred             CCEEEcCCCCCHHHHHHHHH-----CCCC
Confidence            55668999999999999999     7996

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=89.26  E-value=2.3  Score=32.61  Aligned_cols=34  Identities=29%  Similarity=0.622  Sum_probs=26.6

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccchH
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL   96 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~~   96 (106)
                      +.+=+-||||+++++.+|++     +|++     ..-|||+..-
T Consensus        79 ~~v~vgGGir~~edv~~~l~-----~Ga~-----~viigt~~~~  112 (233)
T cd04723          79 LGLWVDGGIRSLENAQEWLK-----RGAS-----RVIVGTETLP  112 (233)
T ss_pred             CCEEEecCcCCHHHHHHHHH-----cCCC-----eEEEcceecc
Confidence            55668899999999999999     7974     3346877643

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=88.93  E-value=2.7  Score=34.27  Aligned_cols=78  Identities=17%  Similarity=0.250  Sum_probs=53.1

Q ss_pred             hhhHHHhhCCCc-cc--CCCC------CC----CCCCCCCCCch-HHHHHHHHHHHHhhhcCCceeEeecC------CCC
Q psy969            3 RPRKVAFKGSNF-RT--LHGR------GP----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGKKIGLKPAG------GIS   62 (106)
Q Consensus         3 ~~~iai~aGadF-KT--STG~------~~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~~vgiKaaG------GIr   62 (106)
                      +++.|.++|.|. -=  ..||      +|    ..-.||.. ++ ..+++++.++..++..+..++||.+.      |+ 
T Consensus       147 aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGs-lenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~-  224 (337)
T PRK13523        147 AAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGS-PENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGL-  224 (337)
T ss_pred             HHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCC-HHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCC-
Confidence            467788899998 43  4443      12    11222222 44 58888888888877777789999986      43 


Q ss_pred             CHHHHHHHHHHHHhhCCCCcc
Q psy969           63 TFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus        63 t~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.++++++++..++ .|.||+
T Consensus       225 ~~~e~~~i~~~l~~-~gvD~i  244 (337)
T PRK13523        225 TVQDYVQYAKWMKE-QGVDLI  244 (337)
T ss_pred             CHHHHHHHHHHHHH-cCCCEE
Confidence            68888888877655 688875

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=88.93  E-value=2  Score=36.14  Aligned_cols=65  Identities=18%  Similarity=0.112  Sum_probs=42.1

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++.+++.|+|. .-|.-   +|.. -...+..+..+.+..+    ..+.++-|=++||||+-.|+..-+.     ||++
T Consensus       259 A~~a~~~Gvd~I~Vs~h---GGr~-~d~~~~t~~~L~~i~~----a~~~~~~vi~dGGIr~g~Di~KALa-----LGA~  324 (381)
T PRK11197        259 ARDAVRFGADGIVVSNH---GGRQ-LDGVLSSARALPAIAD----AVKGDITILADSGIRNGLDVVRMIA-----LGAD  324 (381)
T ss_pred             HHHHHhCCCCEEEECCC---CCCC-CCCcccHHHHHHHHHH----HhcCCCeEEeeCCcCcHHHHHHHHH-----cCcC
Confidence            46789999999 65531   1222 0011333343333322    2356789999999999999999999     7986

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=88.68  E-value=2  Score=33.25  Aligned_cols=57  Identities=19%  Similarity=0.194  Sum_probs=38.8

Q ss_pred             hHHHhhCCCc---ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF---RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF---KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ..+-..|+++   .-++|+. ...+     ++-++.+++.+         ++-+=.-|||||.+++.++++     .|+|
T Consensus       141 ~aa~~~G~~~i~Le~~sGa~-~~v~-----~e~i~~Vk~~~---------~~Pv~vGGGIrs~e~a~~l~~-----~GAD  200 (205)
T TIGR01769       141 LAAKYFGMKWVYLEAGSGAS-YPVN-----PETISLVKKAS---------GIPLIVGGGIRSPEIAYEIVL-----AGAD  200 (205)
T ss_pred             HHHHHcCCCEEEEEcCCCCC-CCCC-----HHHHHHHHHhh---------CCCEEEeCCCCCHHHHHHHHH-----cCCC
Confidence            3445668886   5667773 3345     56566665542         355667799999999999988     5775

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B

Probab=88.61  E-value=1.2  Score=35.87  Aligned_cols=52  Identities=19%  Similarity=0.183  Sum_probs=41.0

Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHhhhcC-CceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccchH
Q psy969           23 DSTSYGNVCNTCGIIMCSAIKHFHKLSG-KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL   96 (106)
Q Consensus        23 ~gat~~~~~~~~v~lm~~~i~~~~~~~~-~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~~   96 (106)
                      .|.+     ++.++.++++++.    .+ +++.|=+|||| |.+.+.+|.+     .|.|       .||.++++
T Consensus       224 ~G~~-----~~~~~~~~~~l~~----~g~~~~~ieaSGgI-~~~~i~~~a~-----~gvD-------~isvGs~~  276 (302)
T cd01571         224 RGVF-----RYLIREVRWALDI----RGYKHVKIFVSGGL-DEEDIKELED-----VGVD-------AFGVGTAI  276 (302)
T ss_pred             CCCH-----HHHHHHHHHHHHh----CCCCCeEEEEeCCC-CHHHHHHHHH-----cCCC-------EEECCccc
Confidence            4567     8888888888754    33 67899999999 9999999999     7886       77766543

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=88.27  E-value=1.6  Score=36.29  Aligned_cols=61  Identities=15%  Similarity=0.160  Sum_probs=38.5

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      +.+.+.|+|| +...||......     +.....+++..+    ..  .+-|=+.||| +.+.+.++++     .|++.
T Consensus       125 ~~a~~~GaD~I~~~pg~~~~~~~-----~~~~~~l~~l~~----~~--~iPI~a~GGI-~~~n~~~~l~-----aGAdg  186 (430)
T PRK07028        125 VELEELGVDYINVHVGIDQQMLG-----KDPLELLKEVSE----EV--SIPIAVAGGL-DAETAAKAVA-----AGADI  186 (430)
T ss_pred             HHHHhcCCCEEEEEeccchhhcC-----CChHHHHHHHHh----hC--CCcEEEECCC-CHHHHHHHHH-----cCCCE
Confidence            4567889999 988887421111     222333333221    11  2567789999 6889999999     79863

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=87.70  E-value=3.4  Score=28.40  Aligned_cols=26  Identities=35%  Similarity=0.540  Sum_probs=22.3

Q ss_pred             CceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .++-|=++|||++.+++.++++     .|++
T Consensus       169 ~~~pi~~~GGi~~~~~~~~~~~-----~Gad  194 (200)
T cd04722         169 SKVPVIAGGGINDPEDAAEALA-----LGAD  194 (200)
T ss_pred             CCCCEEEECCCCCHHHHHHHHH-----hCCC
Confidence            4567888999999999999999     5885

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=87.68  E-value=2.7  Score=34.16  Aligned_cols=64  Identities=16%  Similarity=0.204  Sum_probs=44.6

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.++++|+|. .=      .+-+     ++.++...+.+++    ..+++-|=+|||| |.+.+.+|.+     +|+|  
T Consensus       213 ~eal~~gaDiI~L------Dnm~-----~e~vk~av~~~~~----~~~~v~ieaSGGI-~~~ni~~yA~-----tGvD--  269 (289)
T PRK07896        213 DEVLAEGAELVLL------DNFP-----VWQTQEAVQRRDA----RAPTVLLESSGGL-TLDTAAAYAE-----TGVD--  269 (289)
T ss_pred             HHHHHcCCCEEEe------CCCC-----HHHHHHHHHHHhc----cCCCEEEEEECCC-CHHHHHHHHh-----cCCC--
Confidence            3466778887 41      1344     6666665554432    3578999999999 5788899999     7997  


Q ss_pred             CCCceeEeccchH
Q psy969           84 NKDLFRIGASSLL   96 (106)
Q Consensus        84 ~~~~~RiGtSs~~   96 (106)
                           .|.+|++.
T Consensus       270 -----~Is~galt  277 (289)
T PRK07896        270 -----YLAVGALT  277 (289)
T ss_pred             -----EEEeChhh
Confidence                 88777643

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=87.64  E-value=3.1  Score=30.31  Aligned_cols=62  Identities=19%  Similarity=0.110  Sum_probs=36.8

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCC--CCC-chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYG--NVC-NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP   80 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~--~~~-~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa   80 (106)
                      +.+.+.|+|| +-+.-| |.....+  .+- ++.++.+++.       . +++-|=+.||| +.+++.++++     +|+
T Consensus       118 ~~a~~~gaD~v~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~-------~-~~~~v~a~GGI-~~~~i~~~~~-----~Ga  182 (212)
T PRK00043        118 AAALAAGADYVGVGPIF-PTPTKKDAKAPQGLEGLREIRAA-------V-GDIPIVAIGGI-TPENAPEVLE-----AGA  182 (212)
T ss_pred             HHHhHcCCCEEEECCcc-CCCCCCCCCCCCCHHHHHHHHHh-------c-CCCCEEEECCc-CHHHHHHHHH-----cCC
Confidence            4566789999 866433 2221100  000 2334444332       2 23778899999 6899999999     788


Q ss_pred             C
Q psy969           81 D   81 (106)
Q Consensus        81 ~   81 (106)
                      +
T Consensus       183 ~  183 (212)
T PRK00043        183 D  183 (212)
T ss_pred             C
Confidence            6

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=87.56  E-value=2.2  Score=32.98  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=26.3

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccch
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL   95 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~   95 (106)
                      +-|=+-|||||+|++..+++     +|++     ..-|||...
T Consensus        77 ~pi~vGGGIrs~e~v~~~l~-----~Ga~-----kvvigt~a~  109 (234)
T PRK13587         77 KDIEVGGGIRTKSQIMDYFA-----AGIN-----YCIVGTKGI  109 (234)
T ss_pred             CeEEEcCCcCCHHHHHHHHH-----CCCC-----EEEECchHh
Confidence            56778899999999999999     7985     334677654

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=87.52  E-value=1.9  Score=34.54  Aligned_cols=30  Identities=27%  Similarity=0.531  Sum_probs=24.9

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccc
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS   94 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs   94 (106)
                      .+.|=+.||||+ +++..|++     +|++       |++-+|
T Consensus        76 ~~~v~vGGGIr~-e~v~~~l~-----aGa~-------rVvIGS  105 (253)
T TIGR02129        76 PGGLQVGGGIND-TNAQEWLD-----EGAS-------HVIVTS  105 (253)
T ss_pred             CCCEEEeCCcCH-HHHHHHHH-----cCCC-------EEEECc
Confidence            377888999998 99999999     7996       765554

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=87.25  E-value=4.1  Score=33.53  Aligned_cols=76  Identities=16%  Similarity=0.140  Sum_probs=51.9

Q ss_pred             hhhHHHhhCCCc---ccCCCCC------C--------CCCCCCCCCch-HHHHHHHHHHHHhhhcCC-ceeEeecC----
Q psy969            3 RPRKVAFKGSNF---RTLHGRG------P--------DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK-KIGLKPAG----   59 (106)
Q Consensus         3 ~~~iai~aGadF---KTSTG~~------~--------~gat~~~~~~~-~v~lm~~~i~~~~~~~~~-~vgiKaaG----   59 (106)
                      +++.|.+||.|.   --..||-      |        .|-+     +| -.++++|.+++.++..++ .|++|.|+    
T Consensus       164 AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGs-----lENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~  238 (362)
T PRK10605        164 AIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGS-----VENRARLVLEVVDAGIAEWGADRIGIRISPLGTF  238 (362)
T ss_pred             HHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCc-----HHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc
Confidence            577899999999   4466643      1        1334     55 388888888888777764 69999974    


Q ss_pred             -CC---CCHHH-HHHHHHHHHhhCCCCccC
Q psy969           60 -GI---STFED-SVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        60 -GI---rt~~~-a~~~i~l~~~~lGa~w~~   84 (106)
                       ++   .+.++ +++++...++ .|.|+++
T Consensus       239 ~~~~~G~~~~e~~~~~~~~L~~-~giD~i~  267 (362)
T PRK10605        239 NNVDNGPNEEADALYLIEQLGK-RGIAYLH  267 (362)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHH-cCCCEEE
Confidence             12   46666 7888776654 5777764

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=87.23  E-value=2.6  Score=32.44  Aligned_cols=62  Identities=18%  Similarity=0.322  Sum_probs=42.1

Q ss_pred             hHHHhhCCCc-ccCCCCCCCC-CCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDS-TSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~g-at~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      ..|.++|+|| |=   | |.+ ..     ++.++.++..       . +.+-+=+.|||. .+.+.+|++     +|++ 
T Consensus       123 ~~A~~~Gad~vkl---F-Pa~~~G-----~~~ik~l~~~-------~-p~ip~~atGGI~-~~N~~~~l~-----aGa~-  178 (213)
T PRK06552        123 VTALEAGSEIVKL---F-PGSTLG-----PSFIKAIKGP-------L-PQVNVMVTGGVN-LDNVKDWFA-----AGAD-  178 (213)
T ss_pred             HHHHHcCCCEEEE---C-CcccCC-----HHHHHHHhhh-------C-CCCEEEEECCCC-HHHHHHHHH-----CCCc-
Confidence            3577899999 94   3 322 22     4445544432       2 457788999998 799999999     7985 


Q ss_pred             cCCCceeEeccchH
Q psy969           83 LNKDLFRIGASSLL   96 (106)
Q Consensus        83 ~~~~~~RiGtSs~~   96 (106)
                            -++.+|.+
T Consensus       179 ------~vavgs~l  186 (213)
T PRK06552        179 ------AVGIGGEL  186 (213)
T ss_pred             ------EEEEchHH
Confidence                  77776544

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=86.94  E-value=3  Score=33.13  Aligned_cols=60  Identities=18%  Similarity=0.217  Sum_probs=42.7

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.|.++|||| --.+      -+     ++.++...+.+       +.++-|=++||| |.+.+.+|.+     .|++  
T Consensus       192 ~~A~~~gaDyI~ld~------~~-----~e~lk~~v~~~-------~~~ipi~AsGGI-~~~ni~~~a~-----~Gvd--  245 (265)
T TIGR00078       192 EEAAEAGADIIMLDN------MK-----PEEIKEAVQLL-------KGRVLLEASGGI-TLDNLEEYAE-----TGVD--  245 (265)
T ss_pred             HHHHHcCCCEEEECC------CC-----HHHHHHHHHHh-------cCCCcEEEECCC-CHHHHHHHHH-----cCCC--
Confidence            4577889999 5422      33     55555555443       344789999999 6999999999     7996  


Q ss_pred             CCCceeEeccch
Q psy969           84 NKDLFRIGASSL   95 (106)
Q Consensus        84 ~~~~~RiGtSs~   95 (106)
                           .|.+|..
T Consensus       246 -----~Isvgai  252 (265)
T TIGR00078       246 -----VISSGAL  252 (265)
T ss_pred             -----EEEeCHH
Confidence                 8877654

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=86.79  E-value=4.2  Score=33.58  Aligned_cols=80  Identities=14%  Similarity=0.118  Sum_probs=54.5

Q ss_pred             hhhHHHhhCCCc-cc--CC-CCC------C----CCCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeecC------
Q psy969            3 RPRKVAFKGSNF-RT--LH-GRG------P----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPAG------   59 (106)
Q Consensus         3 ~~~iai~aGadF-KT--ST-G~~------~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaaG------   59 (106)
                      +++.|.++|.|. -=  .. ||-      |    ..-.||.. +| ..+++++.+++.++.+++  .|++|.+.      
T Consensus       155 AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGs-lenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~  233 (382)
T cd02931         155 SAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGS-LENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKD  233 (382)
T ss_pred             HHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCC-HHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccc
Confidence            567888999999 32  35 862      1    11112221 44 588888888888888875  69999883      


Q ss_pred             -------------CCCCHHHHHHHHHHHHhhCCCCccC
Q psy969           60 -------------GISTFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        60 -------------GIrt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                                   |--|++++++++++.++ +|.||++
T Consensus       234 ~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~-~gvD~l~  270 (382)
T cd02931         234 LRQGALPGEEFQEKGRDLEEGLKAAKILEE-AGYDALD  270 (382)
T ss_pred             cccccccccccccCCCCHHHHHHHHHHHHH-hCCCEEE
Confidence                         12478999888887655 4888873

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>PRK08227 autoinducer 2 aldolase; Validated

Probab=86.52  E-value=2.9  Score=33.58  Aligned_cols=57  Identities=19%  Similarity=0.150  Sum_probs=37.2

Q ss_pred             chhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCC-CHHHHHHHHHHHHhhCC
Q psy969            2 GRPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIS-TFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         2 ~~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIr-t~~~a~~~i~l~~~~lG   79 (106)
                      .++|++.+.|||| ||.=       |     -   +-+.+.++      ..++-|=.+||=+ +.++.+++++-+.+ .|
T Consensus       162 ~aaRiaaELGADiVK~~y-------~-----~---~~f~~vv~------a~~vPVviaGG~k~~~~~~L~~v~~ai~-aG  219 (264)
T PRK08227        162 LATRIAAEMGAQIIKTYY-------V-----E---EGFERITA------GCPVPIVIAGGKKLPERDALEMCYQAID-EG  219 (264)
T ss_pred             HHHHHHHHHcCCEEecCC-------C-----H---HHHHHHHH------cCCCcEEEeCCCCCCHHHHHHHHHHHHH-cC
Confidence            3789999999999 9752       1     1   23344443      2456777999998 44556666665544 56


Q ss_pred             C
Q psy969           80 P   80 (106)
Q Consensus        80 a   80 (106)
                      +
T Consensus       220 a  220 (264)
T PRK08227        220 A  220 (264)
T ss_pred             C
Confidence            5

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=86.37  E-value=3.3  Score=30.77  Aligned_cols=24  Identities=33%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +-|=++|||++.+++.+++.     .|++
T Consensus       157 ~Pvi~~GGI~~~~~v~~~l~-----~Gad  180 (236)
T cd04730         157 IPVIAAGGIADGRGIAAALA-----LGAD  180 (236)
T ss_pred             CCEEEECCCCCHHHHHHHHH-----cCCc
Confidence            44557999999999999998     6885

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK06852 aldolase; Validated

Probab=86.37  E-value=3.6  Score=33.78  Aligned_cols=65  Identities=20%  Similarity=0.285  Sum_probs=39.9

Q ss_pred             chhhHHHhhCCCc-ccC-CCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCC-HHHHHHHHHHHHhhC
Q psy969            2 GRPRKVAFKGSNF-RTL-HGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIST-FEDSVRWIYLVLIML   78 (106)
Q Consensus         2 ~~~~iai~aGadF-KTS-TG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt-~~~a~~~i~l~~~~l   78 (106)
                      .++|++.+.|||| ||. |+-  .+.       .+.+.+.+++..     -+++.|=.|||=++ .++.+++++-+.+..
T Consensus       192 ~aaRiaaELGADIVKv~y~~~--~~~-------g~~e~f~~vv~~-----~g~vpVviaGG~k~~~~e~L~~v~~ai~~a  257 (304)
T PRK06852        192 GAAGVAACLGADFVKVNYPKK--EGA-------NPAELFKEAVLA-----AGRTKVVCAGGSSTDPEEFLKQLYEQIHIS  257 (304)
T ss_pred             HHHHHHHHHcCCEEEecCCCc--CCC-------CCHHHHHHHHHh-----CCCCcEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            3689999999999 985 221  111       123344444431     24688889999985 455666666544446


Q ss_pred             CC
Q psy969           79 GP   80 (106)
Q Consensus        79 Ga   80 (106)
                      |+
T Consensus       258 Ga  259 (304)
T PRK06852        258 GA  259 (304)
T ss_pred             CC
Confidence            76

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=86.11  E-value=4.2  Score=32.77  Aligned_cols=57  Identities=18%  Similarity=0.169  Sum_probs=39.8

Q ss_pred             hhHHHhhCCCc-cc-----CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RT-----LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KT-----STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++...++|+++ -+     .||.  +-.+     ++-++.+++.         .++-|=+-|||.|.+||.+.++     
T Consensus       137 ar~l~~~G~~~vmPlg~pIGsg~--Gi~~-----~~~I~~I~e~---------~~vpVI~egGI~tpeda~~Ame-----  195 (248)
T cd04728         137 AKRLEDAGCAAVMPLGSPIGSGQ--GLLN-----PYNLRIIIER---------ADVPVIVDAGIGTPSDAAQAME-----  195 (248)
T ss_pred             HHHHHHcCCCEeCCCCcCCCCCC--CCCC-----HHHHHHHHHh---------CCCcEEEeCCCCCHHHHHHHHH-----
Confidence            45667789999 54     2332  1223     5566655543         3466778899999999999999     


Q ss_pred             CCCC
Q psy969           78 LGPD   81 (106)
Q Consensus        78 lGa~   81 (106)
                      +|++
T Consensus       196 lGAd  199 (248)
T cd04728         196 LGAD  199 (248)
T ss_pred             cCCC
Confidence            7996

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=86.00  E-value=1.2  Score=36.09  Aligned_cols=46  Identities=22%  Similarity=0.295  Sum_probs=31.9

Q ss_pred             chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccC
Q psy969           32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                      .+.=..|.+.+++..+.  --+-+=+.|||||.+++.+++.     +|+|.++
T Consensus        56 ~~gr~~~~~vv~r~A~~--vfiPltVGGGI~s~eD~~~ll~-----aGADKVS  101 (256)
T COG0107          56 SEGRETMLDVVERVAEQ--VFIPLTVGGGIRSVEDARKLLR-----AGADKVS  101 (256)
T ss_pred             cccchhHHHHHHHHHhh--ceeeeEecCCcCCHHHHHHHHH-----cCCCeee
Confidence            33344555555544222  2467788999999999999999     7998543

>PRK07695 transcriptional regulator TenI; Provisional

Probab=85.95  E-value=5.1  Score=29.61  Aligned_cols=63  Identities=16%  Similarity=0.085  Sum_probs=36.7

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.+.|+|| --+.-|.+ ....+.+ +.....+.+..+    .  -++-|=+.||| +.+++.++++     +|++
T Consensus       109 ~~a~~~Gadyi~~g~v~~t-~~k~~~~-~~g~~~l~~~~~----~--~~ipvia~GGI-~~~~~~~~~~-----~Ga~  172 (201)
T PRK07695        109 IQAEKNGADYVVYGHVFPT-DCKKGVP-ARGLEELSDIAR----A--LSIPVIAIGGI-TPENTRDVLA-----AGVS  172 (201)
T ss_pred             HHHHHcCCCEEEECCCCCC-CCCCCCC-CCCHHHHHHHHH----h--CCCCEEEEcCC-CHHHHHHHHH-----cCCC
Confidence            4466789999 65543321 1110000 223344443322    1  24667799999 9999999998     7985

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=85.79  E-value=3.3  Score=33.44  Aligned_cols=61  Identities=15%  Similarity=0.030  Sum_probs=36.2

Q ss_pred             hhHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969            4 PRKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL   73 (106)
Q Consensus         4 ~~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l   73 (106)
                      ++.+.++|+|+-|-+|....+--++..-.+.++.+++.         -++-|=++|||+|.+++.++++.
T Consensus       155 a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~---------~~iPVI~nGgI~s~~da~~~l~~  215 (321)
T PRK10415        155 AQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK---------VSIPVIANGDITDPLKARAVLDY  215 (321)
T ss_pred             HHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHh---------cCCcEEEeCCCCCHHHHHHHHhc
Confidence            34567789998555553321111111113333333322         24678889999999999999974

>PRK04302 triosephosphate isomerase; Provisional

Probab=85.77  E-value=2.6  Score=31.92  Aligned_cols=50  Identities=22%  Similarity=0.164  Sum_probs=36.4

Q ss_pred             chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccch
Q psy969           32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL   95 (106)
Q Consensus        32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~   95 (106)
                      ++.+..+.+.++++    ..++-|=+-|||++.+++..+.+     .|++     .+-+|+..+
T Consensus       157 ~~~i~~~~~~ir~~----~~~~pvi~GggI~~~e~~~~~~~-----~gad-----GvlVGsa~l  206 (223)
T PRK04302        157 PEVVEDAVEAVKKV----NPDVKVLCGAGISTGEDVKAALE-----LGAD-----GVLLASGVV  206 (223)
T ss_pred             HHHHHHHHHHHHhc----cCCCEEEEECCCCCHHHHHHHHc-----CCCC-----EEEEehHHh
Confidence            77777777777643    23456666799999999999998     6774     566777654

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=85.72  E-value=2.8  Score=34.37  Aligned_cols=20  Identities=40%  Similarity=0.632  Sum_probs=18.5

Q ss_pred             ecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           57 PAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        57 aaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +-|||.|.+++..+++     +|++
T Consensus       201 AeGGI~Tpena~~v~e-----~GAd  220 (283)
T cd04727         201 AAGGVATPADAALMMQ-----LGAD  220 (283)
T ss_pred             EeCCCCCHHHHHHHHH-----cCCC
Confidence            7899999999999999     7985

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=85.61  E-value=2.9  Score=31.99  Aligned_cols=66  Identities=15%  Similarity=0.078  Sum_probs=41.4

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      +..|+++||+| ---.|..   ...+..-.+.++-|.+.++    ..+-+..|-++ |+|+.+|+.+.+.     +|++.
T Consensus       115 a~~Aa~AGA~yvsP~vgR~---~~~g~dg~~~i~~i~~~~~----~~~~~tkil~A-s~r~~~ei~~a~~-----~Gad~  181 (211)
T cd00956         115 ALLAAKAGATYVSPFVGRI---DDLGGDGMELIREIRTIFD----NYGFDTKILAA-SIRNPQHVIEAAL-----AGADA  181 (211)
T ss_pred             HHHHHHcCCCEEEEecChH---hhcCCCHHHHHHHHHHHHH----HcCCCceEEec-ccCCHHHHHHHHH-----cCCCE
Confidence            45789999999 4444432   1111111334444444433    33557788876 5999999999888     79974

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=85.55  E-value=2.7  Score=32.24  Aligned_cols=25  Identities=40%  Similarity=0.578  Sum_probs=21.8

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+-|=+.|||||.+++.++++     .|++
T Consensus        74 ~ipv~~~GGi~s~~~~~~~l~-----~Ga~   98 (253)
T PRK02083         74 FIPLTVGGGIRSVEDARRLLR-----AGAD   98 (253)
T ss_pred             CCCEEeeCCCCCHHHHHHHHH-----cCCC
Confidence            366788999999999999999     6875

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=85.53  E-value=1.9  Score=33.68  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=25.0

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccc
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS   94 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs   94 (106)
                      .-|=.-|||||.+++..+++     +|++     ..-|||..
T Consensus        74 ~~v~vGGGIrs~e~~~~~l~-----~Ga~-----rvvigT~a  105 (241)
T PRK14114         74 EHIQIGGGIRSLDYAEKLRK-----LGYR-----RQIVSSKV  105 (241)
T ss_pred             CcEEEecCCCCHHHHHHHHH-----CCCC-----EEEECchh
Confidence            35677899999999999999     7985     22367754

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=85.46  E-value=4  Score=33.11  Aligned_cols=56  Identities=14%  Similarity=0.086  Sum_probs=41.8

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.++++|||. .=      .+-+     +++++...+.+++    ..+++.+=+|||| |++.+.+|..     .|.|
T Consensus       203 ~ea~~agaDiI~L------Dn~~-----~e~l~~av~~~~~----~~~~~~leaSGGI-~~~ni~~yA~-----tGvD  259 (284)
T PRK06096        203 IAALRAQPDVLQL------DKFS-----PQQATEIAQIAPS----LAPHCTLSLAGGI-NLNTLKNYAD-----CGIR  259 (284)
T ss_pred             HHHHHcCCCEEEE------CCCC-----HHHHHHHHHHhhc----cCCCeEEEEECCC-CHHHHHHHHh-----cCCC
Confidence            4577889998 52      3455     7777777665532    2468899999999 5889999999     7997

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=85.26  E-value=2.6  Score=35.22  Aligned_cols=65  Identities=25%  Similarity=0.355  Sum_probs=40.9

Q ss_pred             hhhHHHhhCCCc---ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969            3 RPRKVAFKGSNF---RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         3 ~~~iai~aGadF---KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG   79 (106)
                      +.+..+++|+|+   -+++|..           +.+.-+.+.|++.   . +++-|= +|.|-|.+.|+.|++     +|
T Consensus       112 r~~~L~~agvD~ivID~a~g~s-----------~~~~~~ik~ik~~---~-~~~~vi-aGNV~T~e~a~~L~~-----aG  170 (352)
T PF00478_consen  112 RAEALVEAGVDVIVIDSAHGHS-----------EHVIDMIKKIKKK---F-PDVPVI-AGNVVTYEGAKDLID-----AG  170 (352)
T ss_dssp             HHHHHHHTT-SEEEEE-SSTTS-----------HHHHHHHHHHHHH---S-TTSEEE-EEEE-SHHHHHHHHH-----TT
T ss_pred             HHHHHHHcCCCEEEccccCccH-----------HHHHHHHHHHHHh---C-CCceEE-ecccCCHHHHHHHHH-----cC
Confidence            456678899999   7788753           2333333344332   3 366665 599999999999999     79


Q ss_pred             CCccCCCceeEecc
Q psy969           80 PDWLNKDLFRIGAS   93 (106)
Q Consensus        80 a~w~~~~~~RiGtS   93 (106)
                      +|     ..|+|..
T Consensus       171 ad-----~vkVGiG  179 (352)
T PF00478_consen  171 AD-----AVKVGIG  179 (352)
T ss_dssp             -S-----EEEESSS
T ss_pred             CC-----EEEEecc
Confidence            85     5677643

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=85.05  E-value=3.3  Score=32.88  Aligned_cols=60  Identities=20%  Similarity=0.222  Sum_probs=43.1

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.|.++|||| --..      -+     ++.++-..+.+       +.++-|=++||| |.+.+.+|.+     .|++  
T Consensus       196 ~~A~~~gaDyI~ld~------~~-----~e~l~~~~~~~-------~~~ipi~AiGGI-~~~ni~~~a~-----~Gvd--  249 (268)
T cd01572         196 KEALEAGADIIMLDN------MS-----PEELREAVALL-------KGRVLLEASGGI-TLENIRAYAE-----TGVD--  249 (268)
T ss_pred             HHHHHcCCCEEEECC------cC-----HHHHHHHHHHc-------CCCCcEEEECCC-CHHHHHHHHH-----cCCC--
Confidence            4567889999 6432      24     66666555443       336889999999 6999999999     7996  


Q ss_pred             CCCceeEeccch
Q psy969           84 NKDLFRIGASSL   95 (106)
Q Consensus        84 ~~~~~RiGtSs~   95 (106)
                           .|.++++
T Consensus       250 -----~Iav~sl  256 (268)
T cd01572         250 -----YISVGAL  256 (268)
T ss_pred             -----EEEEEee
Confidence                 7776654

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>cd02812 PcrB_like PcrB_like proteins

Probab=84.96  E-value=2.6  Score=32.93  Aligned_cols=24  Identities=29%  Similarity=0.306  Sum_probs=20.4

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +-|=.-|||||.+||.++++     +|++
T Consensus       176 ~pl~vGGGIrs~e~a~~l~~-----aGAD  199 (219)
T cd02812         176 TPLIVGGGIRSGEQAKEMAE-----AGAD  199 (219)
T ss_pred             CCEEEeCCCCCHHHHHHHHH-----cCCC
Confidence            44556899999999999999     7986

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=84.74  E-value=4.8  Score=32.98  Aligned_cols=60  Identities=17%  Similarity=0.156  Sum_probs=41.7

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.++++|+|. .=      .+-+     +++++...+.+       ++++-|=+|||| |++.+.+|.+     .|+|  
T Consensus       222 ~ea~~~gaDiI~L------Dn~s-----~e~~~~av~~~-------~~~~~ieaSGGI-~~~ni~~yA~-----tGVD--  275 (296)
T PRK09016        222 DQALKAGADIIML------DNFT-----TEQMREAVKRT-------NGRALLEVSGNV-TLETLREFAE-----TGVD--  275 (296)
T ss_pred             HHHHHcCCCEEEe------CCCC-----hHHHHHHHHhh-------cCCeEEEEECCC-CHHHHHHHHh-----cCCC--
Confidence            4567788887 52      2234     66555554433       468999999999 5788999988     7997  


Q ss_pred             CCCceeEeccch
Q psy969           84 NKDLFRIGASSL   95 (106)
Q Consensus        84 ~~~~~RiGtSs~   95 (106)
                           .|.+|++
T Consensus       276 -----~Is~gal  282 (296)
T PRK09016        276 -----FISVGAL  282 (296)
T ss_pred             -----EEEeCcc
Confidence                 7766653

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=84.64  E-value=4.4  Score=32.68  Aligned_cols=57  Identities=21%  Similarity=0.181  Sum_probs=41.8

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.++++|+|. . -.     +-+     +++++...+.+++    ..+++.|=+|||| +.+.+.+|..     .|+|
T Consensus       201 a~ea~~~GaDiI~-lD-----n~~-----~e~l~~~v~~l~~----~~~~~~leasGGI-~~~ni~~ya~-----~GvD  258 (277)
T TIGR01334       201 ALTVLQASPDILQ-LD-----KFT-----PQQLHHLHERLKF----FDHIPTLAAAGGI-NPENIADYIE-----AGID  258 (277)
T ss_pred             HHHHHHcCcCEEE-EC-----CCC-----HHHHHHHHHHHhc----cCCCEEEEEECCC-CHHHHHHHHh-----cCCC
Confidence            34677889998 4 22     345     7777766666542    2578899999999 5888999998     7997

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=84.58  E-value=3.2  Score=32.08  Aligned_cols=33  Identities=30%  Similarity=0.451  Sum_probs=25.6

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccc
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS   94 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs   94 (106)
                      .+-|=+.||||+.+++.+++.     +|++     ..-+|++.
T Consensus        74 ~~pv~~~GGi~s~~d~~~~~~-----~Ga~-----~vivgt~~  106 (254)
T TIGR00735        74 FIPLTVGGGIKSIEDVDKLLR-----AGAD-----KVSINTAA  106 (254)
T ss_pred             CCCEEEECCCCCHHHHHHHHH-----cCCC-----EEEEChhH
Confidence            366788999999999999999     6885     23456654

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=84.56  E-value=3.6  Score=34.57  Aligned_cols=70  Identities=13%  Similarity=0.059  Sum_probs=38.6

Q ss_pred             chhhHHHhhCCCc-ccC-CC----CCCC-----C-CCCC-CCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCC-HHHH
Q psy969            2 GRPRKVAFKGSNF-RTL-HG----RGPD-----S-TSYG-NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIST-FEDS   67 (106)
Q Consensus         2 ~~~~iai~aGadF-KTS-TG----~~~~-----g-at~~-~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt-~~~a   67 (106)
                      .+++++.+.|||+ ||. ||    |...     - .-|+ ..-....+.++.+++.-   .-+++.|=.|||=++ .++.
T Consensus       221 ~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac---~ag~vpVviAGG~k~~~~e~  297 (348)
T PRK09250        221 QANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANC---YMGRRGLINSGGASKGEDDL  297 (348)
T ss_pred             HHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhh---ccCCceEEEeCCCCCCHHHH
Confidence            3789999999999 986 32    1110     0 0000 00012345555554321   134789999999994 4555


Q ss_pred             HHHHHHH
Q psy969           68 VRWIYLV   74 (106)
Q Consensus        68 ~~~i~l~   74 (106)
                      ++++.-+
T Consensus       298 L~~v~~a  304 (348)
T PRK09250        298 LDAVRTA  304 (348)
T ss_pred             HHHHHHH
Confidence            5555543

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=84.52  E-value=3.2  Score=33.36  Aligned_cols=63  Identities=17%  Similarity=0.200  Sum_probs=40.8

Q ss_pred             hHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.++|+|+-.-+|+...|-+ +  ...+..++.+..+.    .  ++-|=++|||.+.+++.+++.     +|++
T Consensus       123 ~~a~~~GaD~Ivv~g~eagGh~-g--~~~~~~ll~~v~~~----~--~iPviaaGGI~~~~~~~~al~-----~GA~  185 (307)
T TIGR03151       123 KRMEKAGADAVIAEGMESGGHI-G--ELTTMALVPQVVDA----V--SIPVIAAGGIADGRGMAAAFA-----LGAE  185 (307)
T ss_pred             HHHHHcCCCEEEEECcccCCCC-C--CCcHHHHHHHHHHH----h--CCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence            5678899999444555433322 0  02244554443321    2  366889999999999999998     6986

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=84.49  E-value=2.6  Score=32.29  Aligned_cols=33  Identities=36%  Similarity=0.599  Sum_probs=24.4

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccch
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL   95 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~   95 (106)
                      +-|=+-||||+.+++.++++     +|++     ..-|||...
T Consensus        74 ~~i~vgGGIrs~ed~~~ll~-----~Ga~-----~Vvigt~~~  106 (229)
T PF00977_consen   74 IPIQVGGGIRSIEDAERLLD-----AGAD-----RVVIGTEAL  106 (229)
T ss_dssp             SEEEEESSE-SHHHHHHHHH-----TT-S-----EEEESHHHH
T ss_pred             ccEEEeCccCcHHHHHHHHH-----hCCC-----EEEeChHHh
Confidence            77778899999999999999     7985     234666544

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=84.39  E-value=4.2  Score=32.70  Aligned_cols=60  Identities=20%  Similarity=0.161  Sum_probs=42.5

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.+.+.|+|| --.      +-+     ++.++..++.+       +.++-|=|+||| |.+.+.+|.+     .|++  
T Consensus       202 ~~A~~~gaDyI~lD------~~~-----~e~l~~~~~~~-------~~~i~i~AiGGI-t~~ni~~~a~-----~Gvd--  255 (277)
T PRK08072        202 REAVAAGADIIMFD------NRT-----PDEIREFVKLV-------PSAIVTEASGGI-TLENLPAYGG-----TGVD--  255 (277)
T ss_pred             HHHHHcCCCEEEEC------CCC-----HHHHHHHHHhc-------CCCceEEEECCC-CHHHHHHHHH-----cCCC--
Confidence            3567889999 441      244     77666665543       345667799999 8999999999     7996  


Q ss_pred             CCCceeEeccch
Q psy969           84 NKDLFRIGASSL   95 (106)
Q Consensus        84 ~~~~~RiGtSs~   95 (106)
                           .|-+|++
T Consensus       256 -----~IAvg~l  262 (277)
T PRK08072        256 -----YISLGFL  262 (277)
T ss_pred             -----EEEEChh
Confidence                 6655553

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=84.36  E-value=6.2  Score=32.07  Aligned_cols=80  Identities=16%  Similarity=0.268  Sum_probs=51.5

Q ss_pred             hhhHHHhhCCCc---ccCCCC------CCCC----CCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeecCCC-----
Q psy969            3 RPRKVAFKGSNF---RTLHGR------GPDS----TSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPAGGI-----   61 (106)
Q Consensus         3 ~~~iai~aGadF---KTSTG~------~~~g----at~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaaGGI-----   61 (106)
                      +++.|.++|.|+   --..||      +|.-    -.||.. ++ ..+++++.++..++.++.  .++||.+.--     
T Consensus       146 AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGs-lenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G  224 (343)
T cd04734         146 AARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGS-LENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGG  224 (343)
T ss_pred             HHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCC-HHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCC
Confidence            567888999998   344465      3311    112221 44 478888888888887765  4788886411     


Q ss_pred             CCHHHHHHHHHHHHhhCC-CCccC
Q psy969           62 STFEDSVRWIYLVLIMLG-PDWLN   84 (106)
Q Consensus        62 rt~~~a~~~i~l~~~~lG-a~w~~   84 (106)
                      -|.++.++++++.++ +| .+|++
T Consensus       225 ~~~~e~~~~~~~l~~-~G~vd~i~  247 (343)
T cd04734         225 LSPDEALEIAARLAA-EGLIDYVN  247 (343)
T ss_pred             CCHHHHHHHHHHHHh-cCCCCEEE
Confidence            367888888776655 56 78764

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=84.21  E-value=3.9  Score=30.47  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=24.2

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccc
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS   94 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs   94 (106)
                      +-|=+.||||+.+|+.++++     +|++     ..-+|++.
T Consensus        75 ~pv~~~GGI~~~ed~~~~~~-----~Ga~-----~vilg~~~  106 (233)
T PRK00748         75 IPVQVGGGIRSLETVEALLD-----AGVS-----RVIIGTAA  106 (233)
T ss_pred             CCEEEcCCcCCHHHHHHHHH-----cCCC-----EEEECchH
Confidence            44556899999999999999     6885     23456654

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=84.10  E-value=5.4  Score=32.47  Aligned_cols=81  Identities=11%  Similarity=0.087  Sum_probs=52.3

Q ss_pred             hhhHHHhhCCCc-cc--CCCCC------C----CCCCCCCCCch-HHHHHHHHHHHHhhhcCC-ceeEeecCC-----C-
Q psy969            3 RPRKVAFKGSNF-RT--LHGRG------P----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK-KIGLKPAGG-----I-   61 (106)
Q Consensus         3 ~~~iai~aGadF-KT--STG~~------~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~-~vgiKaaGG-----I-   61 (106)
                      +++.|.++|.|. -=  ..||-      |    ..-.||-. ++ ..+++++.+++.++.++. .|+||.++.     + 
T Consensus       157 aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGs-lenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~  235 (338)
T cd02933         157 AARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGS-IENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMG  235 (338)
T ss_pred             HHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCc-HHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCC
Confidence            567888999999 43  45532      1    11112211 44 578888888888777765 799999842     1 


Q ss_pred             --CCHHHHHHHHHHHHhhCCCCccCC
Q psy969           62 --STFEDSVRWIYLVLIMLGPDWLNK   85 (106)
Q Consensus        62 --rt~~~a~~~i~l~~~~lGa~w~~~   85 (106)
                        .+.++.+++++..++ .|.|+++-
T Consensus       236 ~~~~~ee~~~~~~~l~~-~g~d~i~v  260 (338)
T cd02933         236 DSDPEATFSYLAKELNK-RGLAYLHL  260 (338)
T ss_pred             CCCCHHHHHHHHHHHHH-cCCcEEEE
Confidence              377888888776544 37777643

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=84.09  E-value=7.1  Score=28.31  Aligned_cols=61  Identities=16%  Similarity=0.181  Sum_probs=36.3

Q ss_pred             HHHhhCCCc-ccCCCCCC---CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            6 KVAFKGSNF-RTLHGRGP---DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         6 iai~aGadF-KTSTG~~~---~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.+.|+|| +.++=|.+   ++.+  .  +.....+.+..+.    . +++-|=+.||| +.+++.++++     +|++
T Consensus       111 ~a~~~g~dyi~~~~v~~t~~k~~~~--~--~~g~~~l~~~~~~----~-~~~pv~a~GGI-~~~~~~~~~~-----~G~~  175 (196)
T TIGR00693       111 EAEAEGADYIGFGPIFPTPTKKDPA--P--PAGVELLREIAAT----S-IDIPIVAIGGI-TLENAAEVLA-----AGAD  175 (196)
T ss_pred             HHhHcCCCEEEECCccCCCCCCCCC--C--CCCHHHHHHHHHh----c-CCCCEEEECCc-CHHHHHHHHH-----cCCC
Confidence            466789999 86543321   1111  0  1134444433321    1 24678899999 5899999988     6885

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=84.06  E-value=5.4  Score=30.02  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=21.6

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+-|=++|||+|++++.++.+     +|++
T Consensus       193 ~iPvia~GGI~~~~di~~~~~-----~Ga~  217 (241)
T PRK13585        193 DIPVIASGGVTTLDDLRALKE-----AGAA  217 (241)
T ss_pred             CCCEEEeCCCCCHHHHHHHHH-----cCCC
Confidence            467889999999999999877     6885

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=83.89  E-value=3.2  Score=40.66  Aligned_cols=69  Identities=25%  Similarity=0.177  Sum_probs=41.3

Q ss_pred             HHhhCCCcccCCCC-CCCCCCC-------CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969            7 VAFKGSNFRTLHGR-GPDSTSY-------GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML   78 (106)
Q Consensus         7 ai~aGadFKTSTG~-~~~gat~-------~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l   78 (106)
                      +.++||||-|=.|. +..||+.       |-|=...+....+++...  ....+|-|=++||++|..|+...+.     |
T Consensus      1016 vaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~--glR~rv~l~a~Ggl~t~~Dv~kA~a-----L 1088 (1485)
T PRK11750       1016 VAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVAN--GLRHKIRLQVDGGLKTGLDVIKAAI-----L 1088 (1485)
T ss_pred             hhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhc--CCCcceEEEEcCCcCCHHHHHHHHH-----c
Confidence            46789999444443 3445551       111111122222222211  1356899999999999999999998     7


Q ss_pred             CCCc
Q psy969           79 GPDW   82 (106)
Q Consensus        79 Ga~w   82 (106)
                      ||||
T Consensus      1089 GAd~ 1092 (1485)
T PRK11750       1089 GAES 1092 (1485)
T ss_pred             CCcc
Confidence            9973

>PRK00208 thiG thiazole synthase; Reviewed

Probab=83.85  E-value=7  Score=31.54  Aligned_cols=57  Identities=18%  Similarity=0.154  Sum_probs=39.7

Q ss_pred             hhHHHhhCCCc-cc-----CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RT-----LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KT-----STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++...++|+|+ -+     .||.  +-.+     ++.++.+++.         .++-|=+-|||.|.+||.+.++     
T Consensus       137 ak~l~~~G~~~vmPlg~pIGsg~--gi~~-----~~~i~~i~e~---------~~vpVIveaGI~tpeda~~Ame-----  195 (250)
T PRK00208        137 AKRLEEAGCAAVMPLGAPIGSGL--GLLN-----PYNLRIIIEQ---------ADVPVIVDAGIGTPSDAAQAME-----  195 (250)
T ss_pred             HHHHHHcCCCEeCCCCcCCCCCC--CCCC-----HHHHHHHHHh---------cCCeEEEeCCCCCHHHHHHHHH-----
Confidence            45567789999 54     3442  1234     5556655543         3466778899999999999999     


Q ss_pred             CCCC
Q psy969           78 LGPD   81 (106)
Q Consensus        78 lGa~   81 (106)
                      +|++
T Consensus       196 lGAd  199 (250)
T PRK00208        196 LGAD  199 (250)
T ss_pred             cCCC
Confidence            7996

>PLN02411 12-oxophytodienoate reductase

Probab=83.75  E-value=4.6  Score=33.64  Aligned_cols=76  Identities=9%  Similarity=0.034  Sum_probs=51.6

Q ss_pred             hhhHHHhhCCCc---ccCCCCC------C--------CCCCCCCCCch-HHHHHHHHHHHHhhhcCC-ceeEeecCC---
Q psy969            3 RPRKVAFKGSNF---RTLHGRG------P--------DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK-KIGLKPAGG---   60 (106)
Q Consensus         3 ~~~iai~aGadF---KTSTG~~------~--------~gat~~~~~~~-~v~lm~~~i~~~~~~~~~-~vgiKaaGG---   60 (106)
                      +++.|.+||.|.   .-.+||-      |        .|-+     +| -.++++|.|++.++.+++ .|+||.|+.   
T Consensus       170 AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGS-----lENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~  244 (391)
T PLN02411        170 AALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGS-----IENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDH  244 (391)
T ss_pred             HHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCC-----HHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccc
Confidence            567899999999   5677752      1        1334     45 388888888888888764 699999952   


Q ss_pred             -----CCCHHHHHHHHHHHHhh---C--CCCcc
Q psy969           61 -----ISTFEDSVRWIYLVLIM---L--GPDWL   83 (106)
Q Consensus        61 -----Irt~~~a~~~i~l~~~~---l--Ga~w~   83 (106)
                           -.+.++.+.+.+..+.+   .  |.+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i  277 (391)
T PLN02411        245 LDATDSDPLNLGLAVVERLNKLQLQNGSKLAYL  277 (391)
T ss_pred             cCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEE
Confidence                 23456677777666553   3  36765

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=83.57  E-value=5.1  Score=29.61  Aligned_cols=79  Identities=13%  Similarity=0.058  Sum_probs=47.8

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCC----CCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPD----STSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~----gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      +++.+.++|+|. .=.-|- |.    .-.||+.-..+.+++.+.++++++..+..+.+|...|....+++.++++..++ 
T Consensus        72 aa~~~~~aG~d~ieln~g~-p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~-  149 (231)
T cd02801          72 AAKIVEELGADGIDLNMGC-PSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALED-  149 (231)
T ss_pred             HHHHHHhcCCCEEEEeCCC-CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHH-
Confidence            456677778888 544331 11    00111111345677777777776667778999988777554467676665544 


Q ss_pred             CCCCcc
Q psy969           78 LGPDWL   83 (106)
Q Consensus        78 lGa~w~   83 (106)
                      +|.+++
T Consensus       150 ~Gvd~i  155 (231)
T cd02801         150 AGASAL  155 (231)
T ss_pred             hCCCEE
Confidence            588876

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=83.55  E-value=5.8  Score=30.69  Aligned_cols=77  Identities=17%  Similarity=0.101  Sum_probs=43.0

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      ++.+.++|+|+ --.-+ .|. ...+.....+-+.+.+.+++.++.++..+.+|.++++ +.++..++.+.++ -+|+++
T Consensus       117 a~~~~~~G~d~ielN~~-cP~-~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~-~~~~~~~~a~~l~-~~Gad~  192 (289)
T cd02810         117 ARKIERAGAKALELNLS-CPN-VGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF-DLEDIVELAKAAE-RAGADG  192 (289)
T ss_pred             HHHHHHhCCCEEEEEcC-CCC-CCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC-CHHHHHHHHHHHH-HcCCCE
Confidence            56677889998 43332 221 1101111224455555555555556678999998875 4555555554432 279998


Q ss_pred             cC
Q psy969           83 LN   84 (106)
Q Consensus        83 ~~   84 (106)
                      ++
T Consensus       193 i~  194 (289)
T cd02810         193 LT  194 (289)
T ss_pred             EE
Confidence            74

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=83.43  E-value=5.3  Score=28.99  Aligned_cols=58  Identities=16%  Similarity=0.123  Sum_probs=36.1

Q ss_pred             HHhhCCCc-ccCCCCCCCCCCCCCCC-chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            7 VAFKGSNF-RTLHGRGPDSTSYGNVC-NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         7 ai~aGadF-KTSTG~~~~gat~~~~~-~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +...|+|| +...+|.+...  +.++ ++.++.+++.         ..+-|=+.|||+ .+++.++++     .|++
T Consensus       122 ~~~~~~d~v~~~~~~~~~~~--~~~~~~~~i~~~~~~---------~~~~i~~~GGI~-~~~i~~~~~-----~Gad  181 (202)
T cd04726         122 LLKLGVDIVILHRGIDAQAA--GGWWPEDDLKKVKKL---------LGVKVAVAGGIT-PDTLPEFKK-----AGAD  181 (202)
T ss_pred             HHHCCCCEEEEcCccccccc--CCCCCHHHHHHHHhh---------cCCCEEEECCcC-HHHHHHHHh-----cCCC
Confidence            55679999 88655532211  1111 2233333211         457788999996 999999999     7996

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=83.02  E-value=7.6  Score=27.32  Aligned_cols=60  Identities=13%  Similarity=0.112  Sum_probs=35.9

Q ss_pred             hHHHhhCCCc-ccCCCCCC---CCC-CCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969            5 RKVAFKGSNF-RTLHGRGP---DST-SYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~---~ga-t~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG   79 (106)
                      +.+.+.|+|+ .-++-|-.   .+. .     +.....+.+..+ .     ..+-|=+.|||. .+++.++++     +|
T Consensus       109 ~~~~~~g~d~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~-----~~~pv~a~GGi~-~~~i~~~~~-----~G  171 (196)
T cd00564         109 LRAEELGADYVGFGPVFPTPTKPGAGP-----PLGLELLREIAE-L-----VEIPVVAIGGIT-PENAAEVLA-----AG  171 (196)
T ss_pred             HHHhhcCCCEEEECCccCCCCCCCCCC-----CCCHHHHHHHHH-h-----CCCCEEEECCCC-HHHHHHHHH-----cC
Confidence            3456679999 76654421   111 2     233344433221 1     346677899995 789999998     68


Q ss_pred             CC
Q psy969           80 PD   81 (106)
Q Consensus        80 a~   81 (106)
                      ++
T Consensus       172 a~  173 (196)
T cd00564         172 AD  173 (196)
T ss_pred             CC
Confidence            86

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=82.99  E-value=8.5  Score=31.19  Aligned_cols=79  Identities=18%  Similarity=0.149  Sum_probs=49.1

Q ss_pred             hhhHHHhhCCCc-cc--CCCC------CC----CCCCCCCCCch-HHHHHHHHHHHHhhhcCCc--eeEeecC-----CC
Q psy969            3 RPRKVAFKGSNF-RT--LHGR------GP----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGKK--IGLKPAG-----GI   61 (106)
Q Consensus         3 ~~~iai~aGadF-KT--STG~------~~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~~--vgiKaaG-----GI   61 (106)
                      +++.|.++|.|. .=  ..||      .|    ..-.||.. ++ ..+++.+.+++.++..++.  ++||.+.     |-
T Consensus       142 aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGs-lenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g  220 (353)
T cd02930         142 CAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGS-FENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGG  220 (353)
T ss_pred             HHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCC-HHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCC
Confidence            467788899998 54  2221      11    11112221 33 4777778888887878764  7888763     12


Q ss_pred             CCHHHHHHHHHHHHhhCCCCcc
Q psy969           62 STFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus        62 rt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      -+.++++++.+..++ +|.||+
T Consensus       221 ~~~~e~~~i~~~Le~-~G~d~i  241 (353)
T cd02930         221 STWEEVVALAKALEA-AGADIL  241 (353)
T ss_pred             CCHHHHHHHHHHHHH-cCCCEE
Confidence            478888888877654 576665

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family

Probab=82.84  E-value=5.5  Score=30.83  Aligned_cols=64  Identities=16%  Similarity=0.190  Sum_probs=40.5

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+|.++|||| --=-|....  . +   .+-+.++++ +.++++..+.+..|.+|. +|+.+|+.+...     +|++
T Consensus       116 ~~Aa~aGa~yispyvgRi~d--~-g---~dg~~~v~~-~~~~~~~~~~~tkIlaAS-~r~~~~v~~~~~-----~G~d  180 (213)
T TIGR00875       116 LLAAKAGATYVSPFVGRLDD--I-G---GDGMKLIEE-VKTIFENHAPDTEVIAAS-VRHPRHVLEAAL-----IGAD  180 (213)
T ss_pred             HHHHHcCCCEEEeecchHHH--c-C---CCHHHHHHH-HHHHHHHcCCCCEEEEec-cCCHHHHHHHHH-----cCCC
Confidence            4678889998 443443211  1 1   112333332 334444457789999974 999999999988     7997

This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=82.76  E-value=2.8  Score=33.65  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.1

Q ss_pred             eEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           54 GLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        54 giKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      -+=.=|||||.|||.+|.+     +|+|
T Consensus       193 ~LivGGGIrs~E~A~~~a~-----agAD  215 (240)
T COG1646         193 PLIVGGGIRSPEQAREMAE-----AGAD  215 (240)
T ss_pred             eEEEcCCcCCHHHHHHHHH-----cCCC
Confidence            5666699999999999999     7987

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=82.44  E-value=4.2  Score=30.78  Aligned_cols=63  Identities=19%  Similarity=0.093  Sum_probs=37.1

Q ss_pred             hHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.+.|+|+-+-|+....+.. ..   -+..++.+..+      .-.+-|=++|||++.+++.++++.    .|++
T Consensus       156 ~~l~~~G~d~i~v~~i~~~g~~-~g---~~~~~i~~i~~------~~~~pvia~GGi~~~~di~~~l~~----~g~d  218 (243)
T cd04731         156 KEVEELGAGEILLTSMDRDGTK-KG---YDLELIRAVSS------AVNIPVIASGGAGKPEHFVEAFEE----GGAD  218 (243)
T ss_pred             HHHHHCCCCEEEEeccCCCCCC-CC---CCHHHHHHHHh------hCCCCEEEeCCCCCHHHHHHHHHh----CCCC
Confidence            4566789998334444433322 00   12333332221      125778899999999999999983    3664

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=82.28  E-value=5.9  Score=33.29  Aligned_cols=66  Identities=17%  Similarity=0.170  Sum_probs=42.2

Q ss_pred             hhHHHhhCCCc-ccC-------CCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHH
Q psy969            4 PRKVAFKGSNF-RTL-------HGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVL   75 (106)
Q Consensus         4 ~~iai~aGadF-KTS-------TG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~   75 (106)
                      ++.++++|||. |-+       |+....|+-  -|=+.++....++.+      +..+-|=+=||||..-|...-+.   
T Consensus       164 a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg--~pqltAv~~~a~aa~------~~~v~VIaDGGIr~~gDI~KALA---  232 (343)
T TIGR01305       164 VEELILSGADIVKVGIGPGSVCTTRTKTGVG--YPQLSAVIECADAAH------GLKGHIISDGGCTCPGDVAKAFG---  232 (343)
T ss_pred             HHHHHHcCCCEEEEcccCCCcccCceeCCCC--cCHHHHHHHHHHHhc------cCCCeEEEcCCcCchhHHHHHHH---
Confidence            56788999999 955       333222222  010333444333321      23678889999999999999888   


Q ss_pred             hhCCCCc
Q psy969           76 IMLGPDW   82 (106)
Q Consensus        76 ~~lGa~w   82 (106)
                        +|+++
T Consensus       233 --~GAd~  237 (343)
T TIGR01305       233 --AGADF  237 (343)
T ss_pred             --cCCCE
Confidence              79874

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>KOG1436|consensus

Probab=81.70  E-value=2.6  Score=35.80  Aligned_cols=38  Identities=24%  Similarity=0.351  Sum_probs=33.1

Q ss_pred             HHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969           40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus        40 ~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      +.++++|+++.++|-|=--|||.+-+||.+.|.     +|+..
T Consensus       319 ~~vR~mY~lt~g~IpiIG~GGV~SG~DA~Ekir-----aGASl  356 (398)
T KOG1436|consen  319 NTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIR-----AGASL  356 (398)
T ss_pred             HHHHHHHHhccCCCceEeecCccccHhHHHHHh-----cCchH
Confidence            456777888999999999999999999999999     68853

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=81.63  E-value=5  Score=31.93  Aligned_cols=59  Identities=24%  Similarity=0.178  Sum_probs=34.1

Q ss_pred             hHHHhhCCCcccCCCCCCCCCCCCCCC-chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969            5 RKVAFKGSNFRTLHGRGPDSTSYGNVC-NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL   73 (106)
Q Consensus         5 ~iai~aGadFKTSTG~~~~gat~~~~~-~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l   73 (106)
                      +.+.++|+|+-|-+|..+.+. |..+. .+.++.+++.       +  ++-|=+.|||+|.+++.++++.
T Consensus       154 ~~l~~~G~d~i~vh~r~~~~~-~~~~~~~~~i~~i~~~-------~--~ipvi~nGgI~~~~da~~~l~~  213 (319)
T TIGR00737       154 RIAEDAGAQAVTLHGRTRAQG-YSGEANWDIIARVKQA-------V--RIPVIGNGDIFSPEDAKAMLET  213 (319)
T ss_pred             HHHHHhCCCEEEEEccccccc-CCCchhHHHHHHHHHc-------C--CCcEEEeCCCCCHHHHHHHHHh
Confidence            456678999944444322111 10110 3333333322       2  3667789999999999999964

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=81.30  E-value=4.6  Score=34.36  Aligned_cols=60  Identities=28%  Similarity=0.324  Sum_probs=38.1

Q ss_pred             hhhHHHhhCCCc-c--cCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969            3 RPRKVAFKGSNF-R--TLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         3 ~~~iai~aGadF-K--TSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG   79 (106)
                      +.+..+++|+|+ -  ++.|.   +.+       ..+.+ +.|++   .. +.+-| .+|+|-|.++|+.+++     +|
T Consensus       157 ~v~~lv~aGvDvI~iD~a~g~---~~~-------~~~~v-~~ik~---~~-p~~~v-i~g~V~T~e~a~~l~~-----aG  215 (404)
T PRK06843        157 RVEELVKAHVDILVIDSAHGH---STR-------IIELV-KKIKT---KY-PNLDL-IAGNIVTKEAALDLIS-----VG  215 (404)
T ss_pred             HHHHHHhcCCCEEEEECCCCC---Chh-------HHHHH-HHHHh---hC-CCCcE-EEEecCCHHHHHHHHH-----cC
Confidence            456788999999 5  55543   222       22222 22322   12 22222 2689999999999999     79


Q ss_pred             CCcc
Q psy969           80 PDWL   83 (106)
Q Consensus        80 a~w~   83 (106)
                      +|++
T Consensus       216 aD~I  219 (404)
T PRK06843        216 ADCL  219 (404)
T ss_pred             CCEE
Confidence            9986

>cd04732 HisA HisA

Probab=81.26  E-value=10  Score=28.22  Aligned_cols=24  Identities=38%  Similarity=0.595  Sum_probs=20.6

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +-|=+.|||++.+++.++++     +|++
T Consensus        74 ~pv~~~GgI~~~e~~~~~~~-----~Gad   97 (234)
T cd04732          74 IPVQVGGGIRSLEDIERLLD-----LGVS   97 (234)
T ss_pred             CCEEEeCCcCCHHHHHHHHH-----cCCC
Confidence            45666899999999999999     7986

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=81.21  E-value=5.8  Score=31.22  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=18.8

Q ss_pred             EeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           55 LKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        55 iKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      |=+-||||+.+++.+++.     .|++
T Consensus       187 vivGGGIrs~e~a~~~l~-----~GAD  208 (232)
T PRK04169        187 LIYGGGIRSPEQARELMA-----AGAD  208 (232)
T ss_pred             EEEECCCCCHHHHHHHHH-----hCCC
Confidence            445899999999999888     6886

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=81.10  E-value=7.3  Score=31.82  Aligned_cols=59  Identities=20%  Similarity=0.197  Sum_probs=41.8

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.++++|||- . -     .+-+     |++++...+.+       ++++-+=+|||| |++.+.+|..     .|.|  
T Consensus       211 ~~a~~agaDiIm-L-----Dnms-----pe~l~~av~~~-------~~~~~leaSGGI-~~~ni~~yA~-----tGVD--  264 (290)
T PRK06559        211 EEAAAAGADIIM-L-----DNMS-----LEQIEQAITLI-------AGRSRIECSGNI-DMTTISRFRG-----LAID--  264 (290)
T ss_pred             HHHHHcCCCEEE-E-----CCCC-----HHHHHHHHHHh-------cCceEEEEECCC-CHHHHHHHHh-----cCCC--
Confidence            4567778877 4 1     3344     77766666544       457899999999 5888899988     7997  


Q ss_pred             CCCceeEeccc
Q psy969           84 NKDLFRIGASS   94 (106)
Q Consensus        84 ~~~~~RiGtSs   94 (106)
                           .|-+|+
T Consensus       265 -----~Is~ga  270 (290)
T PRK06559        265 -----YVSSGS  270 (290)
T ss_pred             -----EEEeCc
Confidence                 665554

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=81.00  E-value=4.4  Score=33.78  Aligned_cols=61  Identities=11%  Similarity=0.116  Sum_probs=38.5

Q ss_pred             hhhHHHhhCCCc-cc-----CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHh
Q psy969            3 RPRKVAFKGSNF-RT-----LHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLI   76 (106)
Q Consensus         3 ~~~iai~aGadF-KT-----STG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~   76 (106)
                      .++.++++|+|+ -+     ++.|+.....     +++   +.+.++++      .+-|=+ |+|.|.++|+++++    
T Consensus       146 ~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~-----~~~---i~~~ik~~------~ipVIa-G~V~t~e~A~~l~~----  206 (368)
T PRK08649        146 LAPTVVEAGVDLFVIQGTVVSAEHVSKEGE-----PLN---LKEFIYEL------DVPVIV-GGCVTYTTALHLMR----  206 (368)
T ss_pred             HHHHHHHCCCCEEEEeccchhhhccCCcCC-----HHH---HHHHHHHC------CCCEEE-eCCCCHHHHHHHHH----
Confidence            357788999999 54     4444322223     443   34444321      233433 89999999999998    


Q ss_pred             hCCCCcc
Q psy969           77 MLGPDWL   83 (106)
Q Consensus        77 ~lGa~w~   83 (106)
                       +|+|-+
T Consensus       207 -aGAD~V  212 (368)
T PRK08649        207 -TGAAGV  212 (368)
T ss_pred             -cCCCEE
Confidence             799754

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=80.98  E-value=6.1  Score=30.99  Aligned_cols=27  Identities=37%  Similarity=0.395  Sum_probs=22.1

Q ss_pred             ecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969           57 PAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS   93 (106)
Q Consensus        57 aaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS   93 (106)
                      +-|||.|.+++.++.+     +|++     .+-+|++
T Consensus       216 aegGI~t~ed~~~~~~-----~Gad-----~vlVGsa  242 (260)
T PRK00278        216 SESGIFTPEDLKRLAK-----AGAD-----AVLVGES  242 (260)
T ss_pred             EEeCCCCHHHHHHHHH-----cCCC-----EEEECHH
Confidence            4489999999999999     6874     5677776

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=80.94  E-value=7.8  Score=29.13  Aligned_cols=63  Identities=17%  Similarity=0.130  Sum_probs=35.9

Q ss_pred             hHHHhhCCCcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNFRTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadFKTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.+.|+|+-+-|+....+.. ..   .+.+++.+..+    .  -.+-|=++|||++++++.+.+..    .|++
T Consensus       160 ~~~~~~G~d~i~i~~i~~~g~~-~g---~~~~~~~~i~~----~--~~ipvia~GGi~s~~di~~~l~~----~gad  222 (232)
T TIGR03572       160 REAEQLGAGEILLNSIDRDGTM-KG---YDLELIKTVSD----A--VSIPVIALGGAGSLDDLVEVALE----AGAS  222 (232)
T ss_pred             HHHHHcCCCEEEEeCCCccCCc-CC---CCHHHHHHHHh----h--CCCCEEEECCCCCHHHHHHHHHH----cCCC
Confidence            4566789998333443332221 11   13333333221    1  24668899999999999994442    5774

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=80.82  E-value=4.3  Score=31.68  Aligned_cols=24  Identities=13%  Similarity=-0.033  Sum_probs=21.4

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +-|=..|||||.+++..+++     +|++
T Consensus        75 ~~v~vgGGIrs~e~~~~~l~-----~Ga~   98 (243)
T TIGR01919        75 VVEELSGGRRDDSSLRAALT-----GGRA   98 (243)
T ss_pred             CCEEEcCCCCCHHHHHHHHH-----cCCC
Confidence            56778899999999999999     7986

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=80.74  E-value=7.6  Score=31.82  Aligned_cols=53  Identities=15%  Similarity=0.156  Sum_probs=38.2

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.++++|||. .=      .+-+     |++++...+.+       ++++-+=+|||| |++.+.+|.+     .|.|
T Consensus       219 ~eA~~aGaDiImL------Dnms-----pe~l~~av~~~-------~~~~~lEaSGGI-t~~ni~~yA~-----tGVD  272 (294)
T PRK06978        219 ETALAHGAQSVLL------DNFT-----LDMMREAVRVT-------AGRAVLEVSGGV-NFDTVRAFAE-----TGVD  272 (294)
T ss_pred             HHHHHcCCCEEEE------CCCC-----HHHHHHHHHhh-------cCCeEEEEECCC-CHHHHHHHHh-----cCCC
Confidence            4567788887 41      2334     67666655443       457899999999 5888999988     7997

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=80.49  E-value=7.2  Score=30.09  Aligned_cols=61  Identities=15%  Similarity=0.055  Sum_probs=39.3

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++..+++|...  -|-|.            +...+.+.+..++|     +++-|= +|.|-|.+|+.+.++     +|++
T Consensus        22 a~al~~gGi~~iEit~~t------------p~a~~~I~~l~~~~-----~~~~vG-AGTVl~~e~a~~ai~-----aGA~   78 (201)
T PRK06015         22 ARALAAGGLPAIEITLRT------------PAALDAIRAVAAEV-----EEAIVG-AGTILNAKQFEDAAK-----AGSR   78 (201)
T ss_pred             HHHHHHCCCCEEEEeCCC------------ccHHHHHHHHHHHC-----CCCEEe-eEeCcCHHHHHHHHH-----cCCC
Confidence            46677788877  66652            33444443332232     345444 499999999999999     7998


Q ss_pred             cc-CCCc
Q psy969           82 WL-NKDL   87 (106)
Q Consensus        82 w~-~~~~   87 (106)
                      ++ +|+.
T Consensus        79 FivSP~~   85 (201)
T PRK06015         79 FIVSPGT   85 (201)
T ss_pred             EEECCCC
Confidence            63 5543

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=80.14  E-value=5.1  Score=29.82  Aligned_cols=61  Identities=13%  Similarity=-0.132  Sum_probs=40.4

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      ++...++||+. --.|=-...+-.     +++++.+++.+       .-.|.+|  |+|++.+++..+++     +|+++
T Consensus        37 A~~~~~~GA~~l~v~~~~~~~~g~-----~~~~~~i~~~v-------~iPi~~~--~~i~~~~~v~~~~~-----~Gad~   97 (217)
T cd00331          37 AKAYEKAGAAAISVLTEPKYFQGS-----LEDLRAVREAV-------SLPVLRK--DFIIDPYQIYEARA-----AGADA   97 (217)
T ss_pred             HHHHHHcCCCEEEEEeCccccCCC-----HHHHHHHHHhc-------CCCEEEC--CeecCHHHHHHHHH-----cCCCE
Confidence            35566778887 433321122334     66777776653       4567776  79999999999999     79974


Q ss_pred             c
Q psy969           83 L   83 (106)
Q Consensus        83 ~   83 (106)
                      +
T Consensus        98 v   98 (217)
T cd00331          98 V   98 (217)
T ss_pred             E
Confidence            3

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=80.04  E-value=9.2  Score=28.56  Aligned_cols=25  Identities=24%  Similarity=0.445  Sum_probs=21.6

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+-|=++|||++.+++.++.+     .|++
T Consensus       189 ~ipvia~GGi~~~~di~~~~~-----~Gad  213 (230)
T TIGR00007       189 NVPVIASGGVSSIDDLIALKK-----LGVY  213 (230)
T ss_pred             CCCEEEeCCCCCHHHHHHHHH-----CCCC
Confidence            466889999999999999887     6875

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
1jcl_A	260	Observation Of Covalent Intermediates In An Enzyme		2e-04
1ktn_A	250	Structural Genomics, Protein Ec1535 Length = 250		3e-04

>pdb|1JCL|A Chain A, Observation Of Covalent Intermediates In An Enzyme Mechanism At Atomic Resolution Length = 260

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 51  KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91
           K +G KPAGG+ T ED+ +++ +   + G DW +   +R G
Sbjct: 197 KTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFG 237

>pdb|1KTN|A Chain A, Structural Genomics, Protein Ec1535 Length = 250

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 51  KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIG 91
           K +G KPAGG+ T ED+ +++ +   + G DW +   +R G
Sbjct: 196 KTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFG 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	5e-23
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	2e-22
4eiv_A	297	Deoxyribose-phosphate aldolase; chemotherapy, brai	1e-18
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	3e-11
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	6e-11
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	9e-09
3oa3_A	288	Aldolase; structural genomics, seattle structural	3e-08
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	4e-08
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	7e-08
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	2e-07
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	9e-07

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 Length = 281

 Score = 89.0 bits (221), Expect = 5e-23
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 37  IMCSAIKHF---HKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93
            +  AIK +   +     KIGLK +GGIS    +  +I L    L     + D FRIG+S
Sbjct: 207 YIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRFLSSLACHPDNFRIGSS 266

Query: 94  SLLNNILQELE 104
           SL+  + + + 
Sbjct: 267 SLVIKLRKVIS 277

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A Length = 260

 Score = 87.0 bits (216), Expect = 2e-22
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 37  IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 96
           IM   I+       K +G KPAGG+ T ED+ +++ +   + G DW +   +R GASSLL
Sbjct: 185 IMMEVIRDMG--VEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGASSLL 242

Query: 97  NNILQELE 104
            ++L+ L 
Sbjct: 243 ASLLKALG 250

>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* Length = 297

 Score = 77.5 bits (191), Expect = 1e-18
 Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 15/82 (18%)

Query: 37  IMCSAIKHFHKLSGKKI---------------GLKPAGGISTFEDSVRWIYLVLIMLGPD 81
           ++  A++ +     ++I               G+K   G     ++  ++  ++   GP 
Sbjct: 201 LISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQMIFENGPR 260

Query: 82  WLNKDLFRIGASSLLNNILQEL 103
            + +D FR+G    L   L++ 
Sbjct: 261 SIVRDKFRVGGGFNLLKELRDC 282

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 Length = 226

 Score = 56.5 bits (137), Expect = 3e-11
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 38  MCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLN 97
             +AI  + K  G ++G+K AGGI T E +       ++       +    R+G S+   
Sbjct: 170 RAAAIARYIKEKGYRLGVKMAGGIRTREQAKA-----IVDAIGWGEDPARVRLGTSTPEA 224

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A Length = 231

 Score = 55.7 bits (135), Expect = 6e-11
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 41  AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS 93
           A++   +  G+++G+K +GGI T E +   +      LG       L   G++
Sbjct: 179 AVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGATRLGLSGSRAVLDGFGSA 231

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 Length = 225

 Score = 49.9 bits (120), Expect = 9e-09
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 13/65 (20%)

Query: 41  AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
            ++     +  +I +K +GGI   E ++      +I  G D       RIG SS + +I 
Sbjct: 164 EVRLIKSSAKGRIKVKASGGIRDLETAIS-----MIEAGAD-------RIGTSSGI-SIA 210

Query: 101 QELEA 105
           +E   
Sbjct: 211 EEFLK 215

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} Length = 288

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 17/69 (24%)

Query: 37  IMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLL 96
           +M +           +  +K +GGI T ED V+     ++  G +       R+GAS+ +
Sbjct: 223 LMSAVCDSL----QSETRVKASGGIRTIEDCVK-----MVRAGAE-------RLGASAGV 266

Query: 97  NNILQELEA 105
             I+ E   
Sbjct: 267 -KIVNETRL 274

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} Length = 239

 Score = 48.0 bits (115), Expect = 4e-08
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 13/64 (20%)

Query: 41  AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
            +K      G K  +K AGGI TF+D+++     +I  G         RIGAS+ +  IL
Sbjct: 189 DVKLMKDTVGDKALVKAAGGIRTFDDAMK-----MINNGAS-------RIGASAGI-AIL 235

Query: 101 QELE 104
             + 
Sbjct: 236 NGIH 239

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} PDB: 1o0y_A* 3r13_A* Length = 260

 Score = 47.7 bits (114), Expect = 7e-08
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 41  AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
            +     + G ++G+K +GGI TFED+V+     +IM G D       RIG SS +  I+
Sbjct: 205 DVHLMKWIVGDEMGVKASGGIRTFEDAVK-----MIMYGAD-------RIGTSSGV-KIV 251

Query: 101 QELEA 105
           Q  E 
Sbjct: 252 QGGEE 256

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 Length = 234

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 19/71 (26%)

Query: 36  IIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL 95
             + S  K         +G+K +GGI +  D+V       +  G D        IG SS 
Sbjct: 182 FRLASLAK------PLGMGVKASGGIRSGIDAVL-----AVGAGAD-------IIGTSSA 223

Query: 96  LNNILQELEAL 106
           +  +L+  ++L
Sbjct: 224 V-KVLESFKSL 233

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* Length = 220

 Score = 44.1 bits (105), Expect = 9e-07
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 13/65 (20%)

Query: 41  AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNIL 100
            +    +++  +  +K AGGI   E ++R     ++  G         R+G SS +  ++
Sbjct: 165 DVALLVRVAQGRAQVKAAGGIRDRETALR-----MLKAGAS-------RLGTSSGV-ALV 211

Query: 101 QELEA 105
                
Sbjct: 212 AGEGG 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	100.0
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	100.0
4eiv_A	297	Deoxyribose-phosphate aldolase; chemotherapy, brai	100.0
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	99.94
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	99.92
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	99.92
3oa3_A	288	Aldolase; structural genomics, seattle structural	99.91
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	99.91
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	99.9
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	99.87
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	99.67
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	98.83
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	98.01
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	97.77
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	97.7
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	97.44
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	97.42
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	97.27
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	97.15
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	96.83
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	96.69
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	96.54
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	96.41
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	96.32
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	96.22
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	96.22
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	96.21
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	96.11
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	96.08
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	96.02
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	95.95
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	95.74
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	95.71
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	95.59
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	95.42
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	95.3
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	95.22
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	95.14
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	95.09
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	95.05
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	95.03
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	94.96
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	94.94
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	94.62
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	94.51
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	94.48
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	94.44
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	94.39
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	94.27
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	94.16
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	94.06
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	93.93
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	93.8
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	93.72
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	93.54
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	93.25
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	93.1
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	92.65
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	92.37
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	92.29
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	92.26
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	91.54
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	91.48
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	91.26
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	91.03
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	91.01
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	90.77
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	90.63
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	90.5
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	90.2
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	90.16
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	90.01
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	89.94
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	89.93
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	89.88
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	89.85
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	89.71
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	89.52
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	88.74
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	88.65
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	88.59
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	88.15
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	88.11
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	87.61
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	87.08
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	87.0
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	86.87
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	86.54
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	86.46
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	86.33
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	86.32
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	86.28
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	86.11
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	86.0
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	85.74
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	85.72
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	85.71
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	85.63
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	85.42
1rvk_A	382	Isomerase/lactonizing enzyme; enolase superfamily,	85.15
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	85.08
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	84.96
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	84.86
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	84.78
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	84.57
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	84.5
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	84.49
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	84.34
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	84.24
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	84.19
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	83.59
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	83.51
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	83.34
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	82.79
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	82.78
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	82.72
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	81.45
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	81.3
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	81.04
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	80.89
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	80.87
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	80.69
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	80.62

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=100.00  E-value=2.7e-33  Score=219.48  Aligned_cols=96  Identities=30%  Similarity=0.548  Sum_probs=91.4

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +|++|+++|||| ||||||.++|||     +++|++|++.|++|+  ++.+++||+||||||++||++|+++..+++|++
T Consensus       155 a~~ia~eaGADfVKTSTGf~~~gAt-----~e~v~lm~~~I~~~~--~g~~v~VKaaGGIrt~~~al~~i~aga~~lG~~  227 (260)
T 1p1x_A          155 ASEISIKAGADFIKTSTGKVAVNAT-----PESARIMMEVIRDMG--VEKTVGFKPAGGVRTAEDAQKYLAIADELFGAD  227 (260)
T ss_dssp             HHHHHHHTTCSEEECCCSCSSCCCC-----HHHHHHHHHHHHHHT--CTTTCEEECBSSCCSHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhCCCEEEeCCCCCCCCCC-----HHHHHHHHHHHHHhc--CCCCceEEEeCCCCCHHHHHHHHHhhhhhcccc
Confidence            799999999999 999999999999     999999999999885  578999999999999999999999999999999


Q ss_pred             ccCCCceeEeccchHHHHHHHHhh
Q psy969           82 WLNKDLFRIGASSLLNNILQELEA  105 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~~~l~~  105 (106)
                      |++|++||||+|+++++|+++|+.
T Consensus       228 w~~~~~~RiGtS~~~~~i~~~~~~  251 (260)
T 1p1x_A          228 WADARHYRFGASSLLASLLKALGH  251 (260)
T ss_dssp             SCSTTTBCEEESTHHHHHHHHHTC
T ss_pred             ccccCceEeecchhHHHHHHHhcc
Confidence            999999999999999988888753

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=100.00  E-value=2.8e-33  Score=221.95  Aligned_cols=98  Identities=28%  Similarity=0.371  Sum_probs=87.3

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHH---hhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHF---HKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML   78 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~---~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l   78 (106)
                      +|++|+++|||| ||||||.++|||     ++++++|+++++++   |...+.+++||+||||||++||++|+++..+++
T Consensus       177 A~~ia~eaGADfVKTSTGf~~~gAT-----~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~~l  251 (281)
T 2a4a_A          177 TTLAVLNGNADFIKTSTGKVQINAT-----PSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRFL  251 (281)
T ss_dssp             HHHHHHTTTCSEEECCCSCSSCCCC-----HHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCEEEeCCCCCCCCCC-----HHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHHhhhhc
Confidence            689999999999 999999999999     99999999999877   666789999999999999999999999999999


Q ss_pred             CCCccCCCceeEeccchHHHHHHHHhh
Q psy969           79 GPDWLNKDLFRIGASSLLNNILQELEA  105 (106)
Q Consensus        79 Ga~w~~~~~~RiGtSs~~~~l~~~l~~  105 (106)
                      |++|++|++||||+|+++++|+++|+.
T Consensus       252 G~~w~~~~~~RiGtSs~~~~l~~~~~~  278 (281)
T 2a4a_A          252 SSLACHPDNFRIGSSSLVIKLRKVISQ  278 (281)
T ss_dssp             C------CCEEEEESSHHHHHHHHHC-
T ss_pred             cccccccCceEEecCccHHHHHHHHHh
Confidence            999999999999999999999999863

>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*

Probab=100.00  E-value=4.4e-33  Score=222.81  Aligned_cols=96  Identities=21%  Similarity=0.325  Sum_probs=84.8

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHh---------------hhcCCceeEeec-CCCCCHH
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFH---------------KLSGKKIGLKPA-GGISTFE   65 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~---------------~~~~~~vgiKaa-GGIrt~~   65 (106)
                      +|++|+++|||| ||||||+++|||     +++|++|++++++|+               ...++++||||| |||||++
T Consensus       171 A~~ia~~AGADFVKTSTGf~~~gAT-----~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e  245 (297)
T 4eiv_A          171 AAVAALEGGADFLQTSSGLGATHAT-----MFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAE  245 (297)
T ss_dssp             HHHHHHHHTCSEEECCCSSSSCCCC-----HHHHHHHHHHHHHHHCC------------------CCEEEEECTTCCHHH
T ss_pred             HHHHHHHhCCCEEEcCCCCCCCCCC-----HHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCCCHH
Confidence            789999999999 999999999999     999999999998875               233789999999 9999999


Q ss_pred             HHHHHHHHHHhhCCCCccCCCceeEeccc-hHHHHHHHHh
Q psy969           66 DSVRWIYLVLIMLGPDWLNKDLFRIGASS-LLNNILQELE  104 (106)
Q Consensus        66 ~a~~~i~l~~~~lGa~w~~~~~~RiGtSs-~~~~l~~~l~  104 (106)
                      ||++|++++++ +|.+|++|++||||+|+ +++.|+..++
T Consensus       246 ~A~~~i~~~~e-lG~~wl~~~~fRiGaSs~ll~el~~~~~  284 (297)
T 4eiv_A          246 TADFLMQMIFE-NGPRSIVRDKFRVGGGFNLLKELRDCYE  284 (297)
T ss_dssp             HHHHHHHHHHH-HCGGGCSTTTEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hCccccCCCceEecccHHHHHHHHHHHh
Confidence            99999999999 99999999999999999 6666655554

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=99.94  E-value=3.4e-27  Score=181.63  Aligned_cols=82  Identities=26%  Similarity=0.316  Sum_probs=76.0

Q ss_pred             hhhHHHhhCCCc-ccCCCCC----------CCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHH
Q psy969            3 RPRKVAFKGSNF-RTLHGRG----------PDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWI   71 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~----------~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i   71 (106)
                      +|++++++|||| ||||||.          ++|||     ++++++|++.+++.    +++++||+||||||++||++|+
T Consensus       133 a~~ia~eaGADfVKTSTGf~~~~~~~~~~~~~gAt-----~~dv~lm~~~i~~~----g~~v~vKaaGGirt~~~al~~i  203 (226)
T 1vcv_A          133 LYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHST-----PERAAAIARYIKEK----GYRLGVKMAGGIRTREQAKAIV  203 (226)
T ss_dssp             HHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCC-----HHHHHHHHHHHHHH----TCCCEEEEESSCCSHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEeCCCCCccccccccCCCCCCC-----HHHHHHHHHHHHHh----CCCceEEEeCCCCCHHHHHHHH
Confidence            689999999999 9999999          89999     99999999998753    7899999999999999999999


Q ss_pred             HHHHhhCCCCccCCCceeEeccchHHH
Q psy969           72 YLVLIMLGPDWLNKDLFRIGASSLLNN   98 (106)
Q Consensus        72 ~l~~~~lGa~w~~~~~~RiGtSs~~~~   98 (106)
                      +++ + +|++   |++||||+|+++++
T Consensus       204 ~a~-~-~Ga~---~~~fRiGtS~~~~i  225 (226)
T 1vcv_A          204 DAI-G-WGED---PARVRLGTSTPEAL  225 (226)
T ss_dssp             HHH-C-SCSC---TTTEEEEESCGGGG
T ss_pred             HHH-H-CCCC---cCCceEecCchhhh
Confidence            987 3 7986   99999999999875

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=99.92  E-value=1.8e-25  Score=175.76  Aligned_cols=75  Identities=33%  Similarity=0.509  Sum_probs=70.9

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +|++|+++|||| ||||||++.|||     +++|++|++.+       +++++||+||||||++||++|++     +|++
T Consensus       178 A~~ia~eaGADfVKTSTGf~~~GAT-----~edV~lm~~~v-------g~~v~VKaAGGIrt~~~al~mi~-----aGA~  240 (260)
T 3r12_A          178 ACVISKLAGAHFVKTSTGFGTGGAT-----AEDVHLMKWIV-------GDEMGVKASGGIRTFEDAVKMIM-----YGAD  240 (260)
T ss_dssp             HHHHHHHTTCSEEECCCSSSSCCCC-----HHHHHHHHHHH-------CTTSEEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHHhCcCEEEcCCCCCCCCCC-----HHHHHHHHHHh-------CCCceEEEeCCCCCHHHHHHHHH-----cCCc
Confidence            799999999999 999999999999     99999999875       78999999999999999999999     7995


Q ss_pred             ccCCCceeEeccchHHHHHH
Q psy969           82 WLNKDLFRIGASSLLNNILQ  101 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~~  101 (106)
                             |||||++++++.+
T Consensus       241 -------RiGtS~g~~I~~~  253 (260)
T 3r12_A          241 -------RIGTSSGVKIVQG  253 (260)
T ss_dssp             -------EEEESCHHHHHHH
T ss_pred             -------eeecchHHHHHHH
Confidence                   9999999998865

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=99.92  E-value=3.6e-25  Score=171.17  Aligned_cols=75  Identities=27%  Similarity=0.367  Sum_probs=70.4

Q ss_pred             hhhHHHhhCCCc-ccCCCCC-CCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRG-PDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP   80 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~-~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa   80 (106)
                      +|++++++|||| ||||||. +.|||     +++|++|++.+       +++++||+||||||++||++|++     +|+
T Consensus       151 a~~ia~~aGADfVKTSTGf~~~~gAt-----~edv~lm~~~v-------~~~v~VKaaGGIrt~~~a~~~i~-----aGa  213 (231)
T 3ndo_A          151 VCRVARDAGADFVKTSTGFHPSGGAS-----VQAVEIMARTV-------GERLGVKASGGIRTAEQAAAMLD-----AGA  213 (231)
T ss_dssp             HHHHHHHTTCSEEECCCSCCTTCSCC-----HHHHHHHHHHH-------TTTSEEEEESSCCSHHHHHHHHH-----TTC
T ss_pred             HHHHHHHHCcCEEEcCCCCCCCCCCC-----HHHHHHHHHHh-------CCCceEEEeCCCCCHHHHHHHHH-----hcc
Confidence            689999999999 9999998 89999     99999999885       68999999999999999999999     799


Q ss_pred             CccCCCceeEeccchHHHHHH
Q psy969           81 DWLNKDLFRIGASSLLNNILQ  101 (106)
Q Consensus        81 ~w~~~~~~RiGtSs~~~~l~~  101 (106)
                      +       |||+|++++++.+
T Consensus       214 ~-------RiGtS~g~~I~~~  227 (231)
T 3ndo_A          214 T-------RLGLSGSRAVLDG  227 (231)
T ss_dssp             S-------EEEESSHHHHHHH
T ss_pred             h-------hcccchHHHHHhh
Confidence            5       9999999998764

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=99.91  E-value=1.1e-24  Score=173.31  Aligned_cols=79  Identities=23%  Similarity=0.300  Sum_probs=73.0

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +|++|+++|||| ||||||.+.|||     ++++++|++.++.    .+.+++||+||||||++||++|++     +|+ 
T Consensus       193 A~~ia~eaGADfVKTSTGf~~~GAT-----~edv~lmr~~v~~----~g~~v~VKAAGGIrt~edAl~mi~-----aGA-  257 (288)
T 3oa3_A          193 GCVLSSLAGADYVKTSTGFNGPGAS-----IENVSLMSAVCDS----LQSETRVKASGGIRTIEDCVKMVR-----AGA-  257 (288)
T ss_dssp             HHHHHHHTTCSEEECCCSSSSCCCC-----HHHHHHHHHHHHH----SSSCCEEEEESSCCSHHHHHHHHH-----TTC-
T ss_pred             HHHHHHHcCCCEEEcCCCCCCCCCC-----HHHHHHHHHHHHH----hCCCceEEEeCCCCCHHHHHHHHH-----cCC-
Confidence            689999999999 999999999999     9999999998753    368899999999999999999999     799 


Q ss_pred             ccCCCceeEeccchHHHHHHH
Q psy969           82 WLNKDLFRIGASSLLNNILQE  102 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~~~  102 (106)
                            +|||+|++++++.+.
T Consensus       258 ------~RiGtS~g~~I~~~~  272 (288)
T 3oa3_A          258 ------ERLGASAGVKIVNET  272 (288)
T ss_dssp             ------SEEEESCHHHHHHHH
T ss_pred             ------ceeehhhHHHHHHHH
Confidence                  599999999988763

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=99.91  E-value=6.4e-25  Score=170.71  Aligned_cols=75  Identities=29%  Similarity=0.428  Sum_probs=70.5

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +|++|+++|||| ||||||+++|||     +++|++|++.+       +++++||+||||||++||++|++     +|+ 
T Consensus       162 a~~ia~~aGADfVKTSTGf~~ggAt-----~~dv~lmr~~v-------g~~v~VKasGGIrt~~da~~~i~-----aGA-  223 (239)
T 3ngj_A          162 VCKRCVAAGAEYVKTSTGFGTHGAT-----PEDVKLMKDTV-------GDKALVKAAGGIRTFDDAMKMIN-----NGA-  223 (239)
T ss_dssp             HHHHHHHHTCSEEECCCSSSSCCCC-----HHHHHHHHHHH-------GGGSEEEEESSCCSHHHHHHHHH-----TTE-
T ss_pred             HHHHHHHHCcCEEECCCCCCCCCCC-----HHHHHHHHHhh-------CCCceEEEeCCCCCHHHHHHHHH-----hcc-
Confidence            689999999999 999999999999     99999999885       68999999999999999999999     799 


Q ss_pred             ccCCCceeEeccchHHHHHH
Q psy969           82 WLNKDLFRIGASSLLNNILQ  101 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~~  101 (106)
                            .|||+|++++++..
T Consensus       224 ------~riGtS~~~~I~~~  237 (239)
T 3ngj_A          224 ------SRIGASAGIAILNG  237 (239)
T ss_dssp             ------EEEEESCHHHHHHT
T ss_pred             ------cceecccHHHHHhc
Confidence                  59999999998853

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=99.90  E-value=5.7e-24  Score=162.52  Aligned_cols=74  Identities=26%  Similarity=0.362  Sum_probs=69.1

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +||+++++|||| ||||||.++|||     ++++++|++.+       +.+++||+||||||++|+++|++     +|++
T Consensus       138 a~~ia~eaGADfVKTsTGf~~~gat-----~~dv~~m~~~v-------g~~v~VkaaGGirt~~~al~~i~-----aGa~  200 (220)
T 1ub3_A          138 LAEAAIRGGADFLKTSTGFGPRGAS-----LEDVALLVRVA-------QGRAQVKAAGGIRDRETALRMLK-----AGAS  200 (220)
T ss_dssp             HHHHHHHHTCSEEECCCSSSSCCCC-----HHHHHHHHHHH-------TTSSEEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHHhCCCEEEeCCCCCCCCCC-----HHHHHHHHHhh-------CCCCeEEEECCCCCHHHHHHHHH-----CCCc
Confidence            689999999999 999999999999     99999999874       68999999999999999999999     7995


Q ss_pred             ccCCCceeEeccchHHHHH
Q psy969           82 WLNKDLFRIGASSLLNNIL  100 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~  100 (106)
                             |||+|++++++.
T Consensus       201 -------RiG~S~g~~I~~  212 (220)
T 1ub3_A          201 -------RLGTSSGVALVA  212 (220)
T ss_dssp             -------EEEETTHHHHHC
T ss_pred             -------ccchhHHHHHHH
Confidence                   999999999653

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=99.87  E-value=1.2e-22  Score=157.00  Aligned_cols=76  Identities=24%  Similarity=0.310  Sum_probs=68.7

Q ss_pred             hhhHHHhhCCCc-ccCCCCCC-CCCCCCCCCchHHHH--HHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGP-DSTSYGNVCNTCGII--MCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML   78 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~-~gat~~~~~~~~v~l--m~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l   78 (106)
                      +|++++++|||| ||||||.+ .|||     ++++++  |++.+       +  ++||+||||||++|+++|++     +
T Consensus       153 a~ria~eaGADfVKTsTG~~~~~gAt-----~~dv~l~~m~~~v-------~--v~VKaaGGirt~~~al~~i~-----a  213 (234)
T 1n7k_A          153 LVDSSRRAGADIVKTSTGVYTKGGDP-----VTVFRLASLAKPL-------G--MGVKASGGIRSGIDAVLAVG-----A  213 (234)
T ss_dssp             HHHHHHHTTCSEEESCCSSSCCCCSH-----HHHHHHHHHHGGG-------T--CEEEEESSCCSHHHHHHHHH-----T
T ss_pred             HHHHHHHhCCCEEEeCCCCCCCCCCC-----HHHHHHHHHHHHH-------C--CCEEEecCCCCHHHHHHHHH-----c
Confidence            689999999999 99999998 9999     999999  98763       4  99999999999999999998     7


Q ss_pred             CCCccCCCceeEeccchHHHHHHHHhh
Q psy969           79 GPDWLNKDLFRIGASSLLNNILQELEA  105 (106)
Q Consensus        79 Ga~w~~~~~~RiGtSs~~~~l~~~l~~  105 (106)
                      |++       |||+|++++++. +++.
T Consensus       214 Ga~-------RiG~S~g~~I~~-~~~~  232 (234)
T 1n7k_A          214 GAD-------IIGTSSAVKVLE-SFKS  232 (234)
T ss_dssp             TCS-------EEEETTHHHHHH-HHHC
T ss_pred             Ccc-------ccchHHHHHHHH-hhhh
Confidence            995       999999998765 4544

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=99.67  E-value=2.1e-16  Score=119.20  Aligned_cols=75  Identities=28%  Similarity=0.363  Sum_probs=67.7

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .++++.++|||| ||||||.++|++     .++++.|++.+       ++++.||++|||+|.+||+++++     +|++
T Consensus       137 ~a~~a~eaGad~I~tstg~~~gga~-----~~~i~~v~~~v-------~~~ipVia~GGI~t~~da~~~l~-----aGA~  199 (225)
T 1mzh_A          137 AVEICIEAGADFIKTSTGFAPRGTT-----LEEVRLIKSSA-------KGRIKVKASGGIRDLETAISMIE-----AGAD  199 (225)
T ss_dssp             HHHHHHHHTCSEEECCCSCSSSCCC-----HHHHHHHHHHH-------TTSSEEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHHhCCCEEEECCCCCCCCCC-----HHHHHHHHHHh-------CCCCcEEEECCCCCHHHHHHHHH-----hCch
Confidence            478999999999 999999888999     99999998774       57899999999999999999998     7996


Q ss_pred             ccCCCceeEeccchHHHHHH
Q psy969           82 WLNKDLFRIGASSLLNNILQ  101 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~~  101 (106)
                             |||+|++++++.+
T Consensus       200 -------~iG~s~~~~i~~~  212 (225)
T 1mzh_A          200 -------RIGTSSGISIAEE  212 (225)
T ss_dssp             -------EEEESCHHHHHHH
T ss_pred             -------HHHHccHHHHHHH
Confidence                   9999999986543

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=98.83  E-value=6e-09  Score=80.17  Aligned_cols=70  Identities=19%  Similarity=0.037  Sum_probs=55.6

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCC--CHHHHHHHHHHHHhhCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIS--TFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIr--t~~~a~~~i~l~~~~lG   79 (106)
                      +|+++.++|||| |||+   |  .+     ++.++.|++..        +.+.||++|||+  |.+++++++..+.+ +|
T Consensus       164 a~~~a~~~GAD~vkt~~---~--~~-----~e~~~~~~~~~--------~~~pV~asGGi~~~~~~~~l~~i~~~~~-aG  224 (263)
T 1w8s_A          164 AARIALELGADAMKIKY---T--GD-----PKTFSWAVKVA--------GKVPVLMSGGPKTKTEEDFLKQVEGVLE-AG  224 (263)
T ss_dssp             HHHHHHHHTCSEEEEEC---C--SS-----HHHHHHHHHHT--------TTSCEEEECCSCCSSHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHcCCCEEEEcC---C--CC-----HHHHHHHHHhC--------CCCeEEEEeCCCCCCHHHHHHHHHHHHH-cC
Confidence            478999999999 9995   2  36     88888888652        445899999999  99999999965554 78


Q ss_pred             CCccCCCceeEeccchHHHHH
Q psy969           80 PDWLNKDLFRIGASSLLNNIL  100 (106)
Q Consensus        80 a~w~~~~~~RiGtSs~~~~l~  100 (106)
                      ++         |+|.+.+++.
T Consensus       225 A~---------GvsvgraI~~  236 (263)
T 1w8s_A          225 AL---------GIAVGRNVWQ  236 (263)
T ss_dssp             CC---------EEEESHHHHT
T ss_pred             Ce---------EEEEehhhcC
Confidence            82         7877776653

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=98.01  E-value=9.7e-06  Score=64.01  Aligned_cols=61  Identities=15%  Similarity=0.079  Sum_probs=50.7

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.++++|+|| ++.+      .+     +++++.+.+.       .++++.|++|||| |++.+.+|.+     .|++  
T Consensus       222 ~eA~~aGaD~I~ld~------~~-----~e~l~~~v~~-------~~~~~~I~ASGGI-t~~~i~~~a~-----~GvD--  275 (296)
T 1qap_A          222 DDALKAGADIIMLDN------FN-----TDQMREAVKR-------VNGQARLEVSGNV-TAETLREFAE-----TGVD--  275 (296)
T ss_dssp             HHHHHTTCSEEEESS------CC-----HHHHHHHHHT-------TCTTCCEEECCCS-CHHHHHHHHH-----TTCS--
T ss_pred             HHHHHcCCCEEEECC------CC-----HHHHHHHHHH-------hCCCCeEEEECCC-CHHHHHHHHH-----cCCC--
Confidence            4567899999 9987      45     7788777654       3568999999999 9999999999     7996  


Q ss_pred             CCCceeEeccchH
Q psy969           84 NKDLFRIGASSLL   96 (106)
Q Consensus        84 ~~~~~RiGtSs~~   96 (106)
                           +||++++.
T Consensus       276 -----~isvGsli  283 (296)
T 1qap_A          276 -----FISVGALT  283 (296)
T ss_dssp             -----EEECSHHH
T ss_pred             -----EEEEeHHH
Confidence                 99998854

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=97.77  E-value=3.4e-05  Score=59.80  Aligned_cols=64  Identities=16%  Similarity=0.116  Sum_probs=51.1

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.++++|+|| ++.|.      +     ++.++.+.+.++.    .-+++.|++|||| |.+.+.+|.+     .|++  
T Consensus       196 ~~A~~aGaD~I~ld~~------~-----~~~l~~~v~~l~~----~~~~~~i~AsGGI-~~~ni~~~~~-----aGaD--  252 (273)
T 2b7n_A          196 KNAMNAGADIVMCDNL------S-----VLETKEIAAYRDA----HYPFVLLEASGNI-SLESINAYAK-----SGVD--  252 (273)
T ss_dssp             HHHHHHTCSEEEEETC------C-----HHHHHHHHHHHHH----HCTTCEEEEESSC-CTTTHHHHHT-----TTCS--
T ss_pred             HHHHHcCCCEEEECCC------C-----HHHHHHHHHHhhc----cCCCcEEEEECCC-CHHHHHHHHH-----cCCc--
Confidence            4567899999 99882      3     7788877766542    1246999999999 9999999999     7996  


Q ss_pred             CCCceeEeccchH
Q psy969           84 NKDLFRIGASSLL   96 (106)
Q Consensus        84 ~~~~~RiGtSs~~   96 (106)
                           +||+++..
T Consensus       253 -----~i~vGs~i  260 (273)
T 2b7n_A          253 -----AISVGALI  260 (273)
T ss_dssp             -----EEECTHHH
T ss_pred             -----EEEEcHHh
Confidence                 99998864

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=97.70  E-value=3.1e-05  Score=60.94  Aligned_cols=64  Identities=16%  Similarity=0.100  Sum_probs=51.3

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.++++|+|| +++|.      +     +++++.+.+.++.    ..+++.|++|||| |.+.+.+|.+     .|++  
T Consensus       211 ~~A~~aGaD~I~ld~~------~-----~~~l~~~v~~l~~----~~~~~~I~ASGGI-t~~ni~~~~~-----aGaD--  267 (299)
T 2jbm_A          211 VQAAEAGADLVLLDNF------K-----PEELHPTATVLKA----QFPSVAVEASGGI-TLDNLPQFCG-----PHID--  267 (299)
T ss_dssp             HHHHHTTCSEEEEESC------C-----HHHHHHHHHHHHH----HCTTSEEEEESSC-CTTTHHHHCC-----TTCC--
T ss_pred             HHHHHcCCCEEEECCC------C-----HHHHHHHHHHhhc----cCCCeeEEEECCC-CHHHHHHHHH-----CCCC--
Confidence            3567899999 99883      4     7788877776542    1356999999999 9999999999     7996  


Q ss_pred             CCCceeEeccchH
Q psy969           84 NKDLFRIGASSLL   96 (106)
Q Consensus        84 ~~~~~RiGtSs~~   96 (106)
                           +||++++.
T Consensus       268 -----~i~vGs~i  275 (299)
T 2jbm_A          268 -----VISMGMLT  275 (299)
T ss_dssp             -----EEECTHHH
T ss_pred             -----EEEEChhh
Confidence                 99999854

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=97.44  E-value=5.2e-05  Score=59.54  Aligned_cols=66  Identities=14%  Similarity=0.137  Sum_probs=33.9

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.++++|+|| ++.|+      +     +++++.+.+.++.... --+++.|++|||| |.+.+.+|.+     .|++  
T Consensus       213 ~~A~~aGaD~I~ld~~------~-----~~~l~~~v~~l~~~~~-g~~~v~I~ASGGI-t~~ni~~~~~-----~GvD--  272 (294)
T 3c2e_A          213 TEAIEAGADVIMLDNF------K-----GDGLKMCAQSLKNKWN-GKKHFLLECSGGL-NLDNLEEYLC-----DDID--  272 (294)
T ss_dssp             HHHHHHTCSEEECCC---------------------------------CCEEEEECCC-CC------CC-----CSCS--
T ss_pred             HHHHHcCCCEEEECCC------C-----HHHHHHHHHHhccccc-CCCCeEEEEECCC-CHHHHHHHHH-----cCCC--
Confidence            3567899999 99883      3     6666666655421000 0024999999999 9999999999     7996  


Q ss_pred             CCCceeEeccch
Q psy969           84 NKDLFRIGASSL   95 (106)
Q Consensus        84 ~~~~~RiGtSs~   95 (106)
                           +||++++
T Consensus       273 -----~i~vGs~  279 (294)
T 3c2e_A          273 -----IYSTSSI  279 (294)
T ss_dssp             -----EEECGGG
T ss_pred             -----EEEEech
Confidence                 9999876

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=97.42  E-value=0.00051  Score=50.24  Aligned_cols=61  Identities=23%  Similarity=0.223  Sum_probs=44.6

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCC--CCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDS--TSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~g--at~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG   79 (106)
                      ++.+.++|+||  +|..|+.+..  ..     ..++.++.+..+      . .+-|.++|||+|.+++.++++     +|
T Consensus       146 a~~a~~~Gad~i~~~v~g~~~~~~~~~-----~~~~~~i~~~~~------~-~ipvia~GGI~s~~~~~~~~~-----~G  208 (234)
T 1yxy_A          146 GLVAHQAGIDFVGTTLSGYTPYSRQEA-----GPDVALIEALCK------A-GIAVIAEGKIHSPEEAKKIND-----LG  208 (234)
T ss_dssp             HHHHHHTTCSEEECTTTTSSTTSCCSS-----SCCHHHHHHHHH------T-TCCEEEESCCCSHHHHHHHHT-----TC
T ss_pred             HHHHHHcCCCEEeeeccccCCCCcCCC-----CCCHHHHHHHHh------C-CCCEEEECCCCCHHHHHHHHH-----CC
Confidence            35678899999  4888876532  12     335555554432      2 688999999999999999999     79


Q ss_pred             CC
Q psy969           80 PD   81 (106)
Q Consensus        80 a~   81 (106)
                      ++
T Consensus       209 ad  210 (234)
T 1yxy_A          209 VA  210 (234)
T ss_dssp             CS
T ss_pred             CC
Confidence            86

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=97.27  E-value=0.00048  Score=54.31  Aligned_cols=57  Identities=16%  Similarity=0.204  Sum_probs=39.8

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCC-CHHHHHHHHHHHHhhCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIS-TFEDSVRWIYLVLIMLGP   80 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIr-t~~~a~~~i~l~~~~lGa   80 (106)
                      ++++|.+.|||| ||+  |.  +.+           |.+..+      ..++.|+++||++ +.+++++++..+.+ +|+
T Consensus       194 aariA~elGAD~VKt~--~t--~e~-----------~~~vv~------~~~vPVv~~GG~~~~~~~~l~~v~~ai~-aGA  251 (295)
T 3glc_A          194 ATRIAAEMGAQIIKTY--YV--EKG-----------FERIVA------GCPVPIVIAGGKKLPEREALEMCWQAID-QGA  251 (295)
T ss_dssp             HHHHHHHTTCSEEEEE--CC--TTT-----------HHHHHH------TCSSCEEEECCSCCCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHHhCCCEEEeC--CC--HHH-----------HHHHHH------hCCCcEEEEECCCCCHHHHHHHHHHHHH-hCC
Confidence            688999999999 998  32  122           222221      2458899999999 67788888755544 587


Q ss_pred             C
Q psy969           81 D   81 (106)
Q Consensus        81 ~   81 (106)
                      .
T Consensus       252 ~  252 (295)
T 3glc_A          252 S  252 (295)
T ss_dssp             S
T ss_pred             e
Confidence            3

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=97.15  E-value=0.0016  Score=50.42  Aligned_cols=35  Identities=17%  Similarity=0.238  Sum_probs=28.2

Q ss_pred             HHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           42 IKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        42 i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +++.++.+++++-|.++|||+|.++|.++++     +|++
T Consensus       279 i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~-----~GAd  313 (336)
T 1f76_A          279 IRRLSLELNGRLPIIGVGGIDSVIAAREKIA-----AGAS  313 (336)
T ss_dssp             HHHHHHHHTTSSCEEEESSCCSHHHHHHHHH-----HTCS
T ss_pred             HHHHHHHhCCCCCEEEECCCCCHHHHHHHHH-----CCCC
Confidence            3333444566899999999999999999999     5986

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=96.83  E-value=0.0021  Score=47.97  Aligned_cols=58  Identities=19%  Similarity=0.058  Sum_probs=39.4

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCC--HHHHHHHHHHHHhhCCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGIST--FEDSVRWIYLVLIMLGP   80 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt--~~~a~~~i~l~~~~lGa   80 (106)
                      ++.+.++|+|| +|+.     +..     ++.++.+++.         -++.|+++|||++  .+++++++..+.+ +|+
T Consensus       172 a~~a~~~Gad~i~~~~-----~~~-----~~~l~~i~~~---------~~ipvva~GGi~~~~~~~~~~~~~~~~~-~Ga  231 (273)
T 2qjg_A          172 ARLGAELGADIVKTSY-----TGD-----IDSFRDVVKG---------CPAPVVVAGGPKTNTDEEFLQMIKDAME-AGA  231 (273)
T ss_dssp             HHHHHHTTCSEEEECC-----CSS-----HHHHHHHHHH---------CSSCEEEECCSCCSSHHHHHHHHHHHHH-HTC
T ss_pred             HHHHHHcCCCEEEECC-----CCC-----HHHHHHHHHh---------CCCCEEEEeCCCCCCHHHHHHHHHHHHH-cCC
Confidence            47788999999 9982     133     4444433322         2589999999995  8898777654332 587


Q ss_pred             C
Q psy969           81 D   81 (106)
Q Consensus        81 ~   81 (106)
                      +
T Consensus       232 ~  232 (273)
T 2qjg_A          232 A  232 (273)
T ss_dssp             S
T ss_pred             c
Confidence            5

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=96.69  E-value=0.0036  Score=50.32  Aligned_cols=73  Identities=16%  Similarity=0.141  Sum_probs=44.3

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCCC-------CCCCCCchHH-HHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDST-------SYGNVCNTCG-IIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL   73 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~ga-------t~~~~~~~~v-~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l   73 (106)
                      ++.+.++|+|+  -|.|..+-...       ..+-..-..+ .+-.+.+++.++.+++++-|-++|||+|.+||.+++. 
T Consensus       240 a~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~-  318 (367)
T 3zwt_A          240 ASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIR-  318 (367)
T ss_dssp             HHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH-
T ss_pred             HHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHH-
Confidence            56788999999  45554321100       0000001111 1112333444455677899999999999999999999 


Q ss_pred             HHhhCCCC
Q psy969           74 VLIMLGPD   81 (106)
Q Consensus        74 ~~~~lGa~   81 (106)
                          +|++
T Consensus       319 ----~GAd  322 (367)
T 3zwt_A          319 ----AGAS  322 (367)
T ss_dssp             ----HTCS
T ss_pred             ----cCCC
Confidence                5986

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=96.54  E-value=0.0069  Score=46.12  Aligned_cols=37  Identities=22%  Similarity=0.350  Sum_probs=29.8

Q ss_pred             HHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        40 ~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+++.++.+++++-|-++|||+|.+||.+++.     +|++
T Consensus       230 ~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~-----~GAd  266 (311)
T 1jub_A          230 ANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLL-----CGAT  266 (311)
T ss_dssp             HHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHH-----HTCS
T ss_pred             HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence            344455555666899999999999999999998     5986

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=96.41  E-value=0.019  Score=46.27  Aligned_cols=64  Identities=16%  Similarity=0.091  Sum_probs=44.1

Q ss_pred             hhHHHhhCCCc-c-cCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-R-TLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-K-TSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++.+.++|+|+ . +.+|.......     +..++.+.+..+.    +++++-|=++|||++.+|+.+.+.     +|++
T Consensus       231 A~~a~~~GaD~I~vsn~GG~~~d~~-----~~~~~~L~~i~~a----v~~~ipVia~GGI~~g~Dv~kaLa-----lGA~  296 (352)
T 3sgz_A          231 AELAMKHNVQGIVVSNHGGRQLDEV-----SASIDALREVVAA----VKGKIEVYMDGGVRTGTDVLKALA-----LGAR  296 (352)
T ss_dssp             HHHHHHTTCSEEEECCGGGTSSCSS-----CCHHHHHHHHHHH----HTTSSEEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHcCCCEEEEeCCCCCccCCC-----ccHHHHHHHHHHH----hCCCCeEEEECCCCCHHHHHHHHH-----cCCC
Confidence            46789999999 4 33432111112     4455555544332    356899999999999999999999     7996

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=96.32  E-value=0.0087  Score=47.87  Aligned_cols=67  Identities=19%  Similarity=0.130  Sum_probs=41.5

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCC-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTS-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++.++++|||| +.+.|-+....|     .+.|-++.+..+.+..++      ..+-|-++|||++.+++.+++.     
T Consensus       159 A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~------~~iPVIA~GGI~~~~di~kala-----  227 (361)
T 3khj_A          159 TKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASK------FGIPIIADGGIRYSGDIGKALA-----  227 (361)
T ss_dssp             HHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHH------HTCCEEEESCCCSHHHHHHHHH-----
T ss_pred             HHHHHHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhh------cCCeEEEECCCCCHHHHHHHHH-----
Confidence            56788999999 984332211011     011113334444333322      2478999999999999999999     


Q ss_pred             CCCC
Q psy969           78 LGPD   81 (106)
Q Consensus        78 lGa~   81 (106)
                      +|++
T Consensus       228 ~GAd  231 (361)
T 3khj_A          228 VGAS  231 (361)
T ss_dssp             HTCS
T ss_pred             cCCC
Confidence            5886

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=96.22  E-value=0.004  Score=51.34  Aligned_cols=69  Identities=17%  Similarity=0.076  Sum_probs=44.9

Q ss_pred             hhHHHhhCCCc--ccCCCCCC----------CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHH
Q psy969            4 PRKVAFKGSNF--RTLHGRGP----------DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWI   71 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~----------~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i   71 (106)
                      ++.+.++|+|.  -|.|....          .|-+ |.+   .-..-.+.|+++++.+++++-|=+.|||+|.+||.+++
T Consensus       289 A~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlS-G~a---~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l  364 (415)
T 3i65_A          289 ADVLLETNIDGMIISNTTTQINDIKSFENKKGGVS-GAK---LKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKI  364 (415)
T ss_dssp             HHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEE-EGG---GHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHH
T ss_pred             HHHHHHcCCcEEEEeCCCcccccccccccccCCcC-Ccc---chHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHH
Confidence            57788999999  55554321          1111 111   11122233444455567789999999999999999999


Q ss_pred             HHHHhhCCCC
Q psy969           72 YLVLIMLGPD   81 (106)
Q Consensus        72 ~l~~~~lGa~   81 (106)
                      .     +|++
T Consensus       365 ~-----aGAd  369 (415)
T 3i65_A          365 E-----AGAS  369 (415)
T ss_dssp             H-----HTEE
T ss_pred             H-----cCCC
Confidence            9     5985

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=96.22  E-value=0.015  Score=46.91  Aligned_cols=64  Identities=16%  Similarity=0.133  Sum_probs=43.3

Q ss_pred             hhHHHhhCCCc-ccCC-CCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-RTLH-GRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-KTST-G~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++.+.++|+|+ ..|. |-......     +..+..+.+..+    .+++++-|=++|||++.+|+.+++.     +|++
T Consensus       266 A~~a~~aGad~I~vs~~ggr~~~~g-----~~~~~~l~~v~~----av~~~ipVia~GGI~~g~Dv~kala-----lGAd  331 (392)
T 2nzl_A          266 AREAVKHGLNGILVSNHGARQLDGV-----PATIDVLPEIVE----AVEGKVEVFLDGGVRKGTDVLKALA-----LGAK  331 (392)
T ss_dssp             HHHHHHTTCCEEEECCGGGTSSTTC-----CCHHHHHHHHHH----HHTTSSEEEECSSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHcCCCEEEeCCCCCCcCCCC-----cChHHHHHHHHH----HcCCCCEEEEECCCCCHHHHHHHHH-----hCCC
Confidence            46788999999 5543 21111122     334444443332    2356799999999999999999999     7996

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=96.21  E-value=0.0052  Score=46.86  Aligned_cols=35  Identities=20%  Similarity=0.253  Sum_probs=27.9

Q ss_pred             HHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        41 ~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+++.++.+ +++-|-++|||+|.+++.+++.     +|++
T Consensus       234 ~i~~v~~~~-~~ipvi~~GGI~~~~da~~~l~-----~GAd  268 (314)
T 2e6f_A          234 NVNAFYRRC-PDKLVFGCGGVYSGEDAFLHIL-----AGAS  268 (314)
T ss_dssp             HHHHHHHHC-TTSEEEEESSCCSHHHHHHHHH-----HTCS
T ss_pred             HHHHHHHhc-CCCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence            334444445 6799999999999999999998     5986

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=96.11  E-value=0.011  Score=48.74  Aligned_cols=73  Identities=23%  Similarity=0.279  Sum_probs=47.8

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCC--CCC-----CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHH
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDS--TSY-----GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVL   75 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~g--at~-----~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~   75 (106)
                      ++.++++|+|| +.  |.++.+  .+-     +-|=.+.+..+.++.+++.+..+..+-|=++|||++..|+...+.   
T Consensus       298 a~~l~~aGad~I~V--g~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAla---  372 (503)
T 1me8_A          298 FRYLADAGADFIKI--GIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA---  372 (503)
T ss_dssp             HHHHHHHTCSEEEE--CSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH---
T ss_pred             HHHHHHhCCCeEEe--cccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHH---
Confidence            56788999999 87  443322  110     111133444555554544444555688999999999999999999   


Q ss_pred             hhCCCCcc
Q psy969           76 IMLGPDWL   83 (106)
Q Consensus        76 ~~lGa~w~   83 (106)
                        +||+.+
T Consensus       373 --lGA~~V  378 (503)
T 1me8_A          373 --MGADFI  378 (503)
T ss_dssp             --TTCSEE
T ss_pred             --cCCCEE
Confidence              799743

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=96.08  E-value=0.013  Score=47.66  Aligned_cols=70  Identities=17%  Similarity=0.159  Sum_probs=44.3

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCC-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTS-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++.+.++|+|| +.|.|-+....+     .+.|-.+.+..+.+..+      ..++-|=++|||++.+++.+.+.     
T Consensus       292 a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~------~~~ipvia~GGI~~~~di~kala-----  360 (494)
T 1vrd_A          292 TEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVAR------KYDVPIIADGGIRYSGDIVKALA-----  360 (494)
T ss_dssp             HHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHH------TTTCCEEEESCCCSHHHHHHHHH-----
T ss_pred             HHHHHHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHh------hcCCCEEEECCcCCHHHHHHHHH-----
Confidence            35678899999 886653211100     00111333444443332      23688999999999999999999     


Q ss_pred             CCCCccC
Q psy969           78 LGPDWLN   84 (106)
Q Consensus        78 lGa~w~~   84 (106)
                      +|++.+.
T Consensus       361 ~GAd~V~  367 (494)
T 1vrd_A          361 AGAESVM  367 (494)
T ss_dssp             TTCSEEE
T ss_pred             cCCCEEE
Confidence            7997543

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=96.02  E-value=0.021  Score=45.66  Aligned_cols=64  Identities=11%  Similarity=0.031  Sum_probs=42.7

Q ss_pred             hhHHHhhCCCc-ccCC-CCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-RTLH-GRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-KTST-G~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++.+.++|+|+ .-|. |.......     +..+..+.+..+    .+++++-|=++|||++.+|+.+++.     +|++
T Consensus       243 a~~a~~~Gad~I~vs~~ggr~~~~g-----~~~~~~l~~v~~----~v~~~ipVia~GGI~~g~D~~kala-----lGAd  308 (368)
T 2nli_A          243 ADMAIKRGASGIWVSNHGARQLYEA-----PGSFDTLPAIAE----RVNKRVPIVFDSGVRRGEHVAKALA-----SGAD  308 (368)
T ss_dssp             HHHHHHTTCSEEEECCGGGTSCSSC-----CCHHHHHHHHHH----HHTTSSCEEECSSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHcCCCEEEEcCCCcCCCCCC-----CChHHHHHHHHH----HhCCCCeEEEECCCCCHHHHHHHHH-----cCCC
Confidence            46788999999 5543 32111111     334444443322    2356799999999999999999999     7986

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=95.95  E-value=0.017  Score=45.82  Aligned_cols=73  Identities=16%  Similarity=0.118  Sum_probs=44.1

Q ss_pred             hhHHHhhCCCc-ccCCCCCC----CCCCCCCCCchHHHHHHHHHHHHhhhcCCc-eeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RTLHGRGP----DSTSYGNVCNTCGIIMCSAIKHFHKLSGKK-IGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~----~gat~~~~~~~~v~lm~~~i~~~~~~~~~~-vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++.++++|+|+ +-++|-..    .+..  -|-.+.+..+.++..++...++++ +-|=++|||++.+|+.+++.     
T Consensus       225 a~~~~~~Gad~i~vg~Gg~~~~~~~~~g--~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kala-----  297 (393)
T 2qr6_A          225 ALHMMRTGAVGIIVGGGENTNSLALGME--VSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIA-----  297 (393)
T ss_dssp             HHHHHTTTCSEEEESCCSCCHHHHTSCC--CCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHH-----
T ss_pred             HHHHHHcCCCEEEECCCcccccccCCCC--CChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHH-----
Confidence            45678899999 87774210    0111  111333444344321111113444 88999999999999999999     


Q ss_pred             CCCCcc
Q psy969           78 LGPDWL   83 (106)
Q Consensus        78 lGa~w~   83 (106)
                      +|++.+
T Consensus       298 lGA~~V  303 (393)
T 2qr6_A          298 CGADAV  303 (393)
T ss_dssp             HTCSEE
T ss_pred             cCCCEE
Confidence            698754

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=95.74  E-value=0.018  Score=44.78  Aligned_cols=25  Identities=32%  Similarity=0.502  Sum_probs=23.0

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++-|=++|||++.+|+.+++.     +|++
T Consensus       256 ~ipvia~GGI~~~~d~~kal~-----~GAd  280 (332)
T 1vcf_A          256 HLPLVASGGVYTGTDGAKALA-----LGAD  280 (332)
T ss_dssp             SSCEEEESSCCSHHHHHHHHH-----HTCS
T ss_pred             CCeEEEECCCCCHHHHHHHHH-----hCCC
Confidence            588999999999999999999     5986

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=95.71  E-value=0.024  Score=46.87  Aligned_cols=73  Identities=18%  Similarity=0.095  Sum_probs=45.8

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCCC-C----CCCCCchH-HHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHH
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDST-S----YGNVCNTC-GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVL   75 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~ga-t----~~~~~~~~-v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~   75 (106)
                      ++.+.++|+|+  -|.|....... +    .+-..-.. -..-.+.++++++.+++++-|=++|||+|.+||.+++.   
T Consensus       317 A~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~---  393 (443)
T 1tv5_A          317 ADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIE---  393 (443)
T ss_dssp             HHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH---
T ss_pred             HHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHH---
Confidence            56788999999  66665421111 0    00000111 11223444555555677899999999999999999999   


Q ss_pred             hhCCCC
Q psy969           76 IMLGPD   81 (106)
Q Consensus        76 ~~lGa~   81 (106)
                        +|++
T Consensus       394 --aGAd  397 (443)
T 1tv5_A          394 --AGAS  397 (443)
T ss_dssp             --TTEE
T ss_pred             --cCCC
Confidence              7985

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=95.59  E-value=0.031  Score=45.65  Aligned_cols=68  Identities=19%  Similarity=0.134  Sum_probs=41.0

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCC--CCC--CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDS--TSY--GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML   78 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~g--at~--~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l   78 (106)
                      ++.++++|||+ +.+  .++..  .+.  ...-...+.++.+..+..   ....+-|-++|||++.+++.+++.     +
T Consensus       198 A~~a~~aGAD~I~vG--~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~---~~~~IPVIA~GGI~~~~di~kala-----l  267 (400)
T 3ffs_A          198 TKELIENGADGIKVG--IGPGSICTTRIVAGVGVPQITAIEKCSSVA---SKFGIPIIADGGIRYSGDIGKALA-----V  267 (400)
T ss_dssp             HHHHHHTTCSEEEEC--C---------CCSCBCCCHHHHHHHHHHHH---TTTTCCEEEESCCCSHHHHHHHHT-----T
T ss_pred             HHHHHHcCCCEEEEe--CCCCcCcccccccccchhHHHHHHHHHHHH---HhcCCCEEecCCCCCHHHHHHHHH-----c
Confidence            46788999999 973  32211  110  000023444444333221   123688999999999999999999     7


Q ss_pred             CCC
Q psy969           79 GPD   81 (106)
Q Consensus        79 Ga~   81 (106)
                      |++
T Consensus       268 GAd  270 (400)
T 3ffs_A          268 GAS  270 (400)
T ss_dssp             TCS
T ss_pred             CCC
Confidence            986

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=95.42  E-value=0.032  Score=44.33  Aligned_cols=64  Identities=14%  Similarity=0.117  Sum_probs=42.9

Q ss_pred             hhHHHhhCCCc-ccCCCCCCC-CCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPD-STSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~-gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++.+.++|+|+ +-|+..+.. ...     +..+..+.+..    +..++++-|=++|||++.+|+.+++.     +|++
T Consensus       239 a~~a~~~Gad~I~vs~~ggr~~~~~-----~~~~~~l~~v~----~~~~~~ipvia~GGI~~~~D~~k~l~-----~GAd  304 (370)
T 1gox_A          239 ARLAVQHGAAGIIVSNHGARQLDYV-----PATIMALEEVV----KAAQGRIPVFLDGGVRRGTDVFKALA-----LGAA  304 (370)
T ss_dssp             HHHHHHTTCSEEEECCGGGTSSTTC-----CCHHHHHHHHH----HHTTTSSCEEEESSCCSHHHHHHHHH-----HTCS
T ss_pred             HHHHHHcCCCEEEECCCCCccCCCc-----ccHHHHHHHHH----HHhCCCCEEEEECCCCCHHHHHHHHH-----cCCC
Confidence            46788999999 765432211 011     33444443332    22456799999999999999999999     6986

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=95.30  E-value=0.027  Score=42.33  Aligned_cols=25  Identities=20%  Similarity=0.385  Sum_probs=22.7

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++-|-++|||+|.+++.++++     +|++
T Consensus       241 ~ipvia~GGI~~~~d~~~~l~-----~GAd  265 (311)
T 1ep3_A          241 DIPIIGMGGVANAQDVLEMYM-----AGAS  265 (311)
T ss_dssp             SSCEEECSSCCSHHHHHHHHH-----HTCS
T ss_pred             CCCEEEECCcCCHHHHHHHHH-----cCCC
Confidence            678999999999999999998     5886

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=95.22  E-value=0.042  Score=43.62  Aligned_cols=69  Identities=20%  Similarity=0.238  Sum_probs=42.5

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCC-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTS-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++.++++|+|| +.+.|-+....+     .+.|-++.+..+.++.+      ..++-|=++|||+|..|+.+.+.     
T Consensus       175 A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~------~~~ipvIa~GGI~~g~di~kAla-----  243 (351)
T 2c6q_A          175 VEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAH------GLKGHIISDGGCSCPGDVAKAFG-----  243 (351)
T ss_dssp             HHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHH------HTTCEEEEESCCCSHHHHHHHHH-----
T ss_pred             HHHHHHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHh------hcCCcEEEeCCCCCHHHHHHHHH-----
Confidence            46789999999 887542110000     00011233333333322      12588899999999999999999     


Q ss_pred             CCCCcc
Q psy969           78 LGPDWL   83 (106)
Q Consensus        78 lGa~w~   83 (106)
                      +|++.+
T Consensus       244 lGA~~V  249 (351)
T 2c6q_A          244 AGADFV  249 (351)
T ss_dssp             TTCSEE
T ss_pred             cCCCce
Confidence            799754

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=95.14  E-value=0.035  Score=44.71  Aligned_cols=68  Identities=22%  Similarity=0.194  Sum_probs=41.0

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCC----CCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYG----NVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML   78 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~----~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l   78 (106)
                      ++.++++|||| +.  |++|.+....    .+-...+..+.+..+ ..+  ...+-|=++|||++.+++.+.+.     +
T Consensus       163 A~~a~~aGAD~I~v--G~gpGs~~~tr~~~g~g~p~~~~l~~v~~-~~~--~~~iPVIA~GGI~~~~di~kala-----~  232 (366)
T 4fo4_A          163 ARALIEAGVSAVKV--GIGPGSICTTRIVTGVGVPQITAIADAAG-VAN--EYGIPVIADGGIRFSGDISKAIA-----A  232 (366)
T ss_dssp             HHHHHHHTCSEEEE--CSSCSTTBCHHHHHCCCCCHHHHHHHHHH-HHG--GGTCCEEEESCCCSHHHHHHHHH-----T
T ss_pred             HHHHHHcCCCEEEE--ecCCCCCCCcccccCcccchHHHHHHHHH-HHh--hcCCeEEEeCCCCCHHHHHHHHH-----c
Confidence            46788999999 87  4444321100    000223444443322 111  12477889999999999999999     7


Q ss_pred             CCC
Q psy969           79 GPD   81 (106)
Q Consensus        79 Ga~   81 (106)
                      |++
T Consensus       233 GAd  235 (366)
T 4fo4_A          233 GAS  235 (366)
T ss_dssp             TCS
T ss_pred             CCC
Confidence            886

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=95.09  E-value=0.12  Score=36.93  Aligned_cols=65  Identities=14%  Similarity=0.089  Sum_probs=40.6

Q ss_pred             hHHHhhCCCc-ccCC-CCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-RTLH-GRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-KTST-G~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.+.|+|| .++. ||...... ...-...++.+.+..+    ..  ++-|=++|||+|.+++.++++     +|++
T Consensus       133 ~~~~~~G~d~i~~~~~g~t~~~~~-~~~~~~~~~~~~~~~~----~~--~ipvia~GGI~~~~~~~~~~~-----~Gad  199 (223)
T 1y0e_A          133 KNAARLGFDYIGTTLHGYTSYTQG-QLLYQNDFQFLKDVLQ----SV--DAKVIAEGNVITPDMYKRVMD-----LGVH  199 (223)
T ss_dssp             HHHHHTTCSEEECTTTTSSTTSTT-CCTTHHHHHHHHHHHH----HC--CSEEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHcCCCEEEeCCCcCcCCCCC-CCCCcccHHHHHHHHh----hC--CCCEEEecCCCCHHHHHHHHH-----cCCC
Confidence            3467889999 8754 44321111 0001334454443322    22  477889999999999999999     7985

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=95.05  E-value=0.0089  Score=42.70  Aligned_cols=59  Identities=25%  Similarity=0.334  Sum_probs=41.1

Q ss_pred             hhHHHhhCCCc-ccCCCCCCC---CCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPD---STSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~---gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG   79 (106)
                      .+.+.+.|+|| .+.+||...   ..+     ++.++.+++.       . +++-|-+.|||+ .+++.++++     +|
T Consensus       120 ~~~~~~~g~d~i~v~~g~~g~~~~~~~-----~~~i~~l~~~-------~-~~~~i~~~gGI~-~~~~~~~~~-----~G  180 (211)
T 3f4w_A          120 VRLLEEAGADMLAVHTGTDQQAAGRKP-----IDDLITMLKV-------R-RKARIAVAGGIS-SQTVKDYAL-----LG  180 (211)
T ss_dssp             HHHHHHHTCCEEEEECCHHHHHTTCCS-----HHHHHHHHHH-------C-SSCEEEEESSCC-TTTHHHHHT-----TC
T ss_pred             HHHHHHcCCCEEEEcCCCcccccCCCC-----HHHHHHHHHH-------c-CCCcEEEECCCC-HHHHHHHHH-----cC
Confidence            46778899999 988875311   112     4444444332       2 357888999997 999999998     79


Q ss_pred             CC
Q psy969           80 PD   81 (106)
Q Consensus        80 a~   81 (106)
                      ++
T Consensus       181 ad  182 (211)
T 3f4w_A          181 PD  182 (211)
T ss_dssp             CS
T ss_pred             CC
Confidence            86

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=95.03  E-value=0.051  Score=43.92  Aligned_cols=68  Identities=19%  Similarity=0.126  Sum_probs=44.2

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCC-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTS-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML   78 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l   78 (106)
                      +.++++|+|+ +.+.|.+....|     .+.|-++.++.+.++.+      ..++-|=++|||++.+|+.+.+.     +
T Consensus       289 ~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~------~~~ipvia~GGi~~~~di~kal~-----~  357 (491)
T 1zfj_A          289 RALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAR------EYGKTIIADGGIKYSGDIVKALA-----A  357 (491)
T ss_dssp             HHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHH------HTTCEEEEESCCCSHHHHHHHHH-----T
T ss_pred             HHHHHcCCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHh------hcCCCEEeeCCCCCHHHHHHHHH-----c
Confidence            4678899999 998775421111     12232444444443322      13467789999999999999998     7


Q ss_pred             CCCcc
Q psy969           79 GPDWL   83 (106)
Q Consensus        79 Ga~w~   83 (106)
                      |++.+
T Consensus       358 GA~~v  362 (491)
T 1zfj_A          358 GGNAV  362 (491)
T ss_dssp             TCSEE
T ss_pred             CCcce
Confidence            88743

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=94.96  E-value=0.068  Score=41.74  Aligned_cols=68  Identities=19%  Similarity=0.192  Sum_probs=41.3

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCC-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTS-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++.++++|||+ ..|++-+..-.+     .+.|.. ....+.+..    +..  ++-|=++|||++..|+.+++.     
T Consensus       163 A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~-~~~~l~~v~----~~~--~ipVIa~GGI~~g~Dv~kala-----  230 (336)
T 1ypf_A          163 VRELENAGADATKVGIGPGKVCITKIKTGFGTGGW-QLAALRWCA----KAA--SKPIIADGGIRTNGDVAKSIR-----  230 (336)
T ss_dssp             HHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTC-HHHHHHHHH----HTC--SSCEEEESCCCSTHHHHHHHH-----
T ss_pred             HHHHHHcCCCEEEEecCCCceeecccccCcCCchh-HHHHHHHHH----HHc--CCcEEEeCCCCCHHHHHHHHH-----
Confidence            46789999999 765531110000     000000 233333332    222  677889999999999999999     


Q ss_pred             CCCCcc
Q psy969           78 LGPDWL   83 (106)
Q Consensus        78 lGa~w~   83 (106)
                      +|++.+
T Consensus       231 lGAdaV  236 (336)
T 1ypf_A          231 FGATMV  236 (336)
T ss_dssp             TTCSEE
T ss_pred             cCCCEE
Confidence            798754

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=94.94  E-value=0.089  Score=41.75  Aligned_cols=57  Identities=11%  Similarity=0.052  Sum_probs=39.7

Q ss_pred             HHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            6 KVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         6 iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.+.|.++ -.-.+.  ...+     ++.|+.+++.       +++.+-|-+-|||||.+|+.++++     +|++
T Consensus       194 ~gad~G~~lV~LD~~~--~~v~-----~e~V~~I~~~-------~~~~iPV~vGGGIrs~Eda~~ll~-----aGAD  251 (286)
T 3vk5_A          194 VARAFGFHMVYLYSRN--EHVP-----PEVVRHFRKG-------LGPDQVLFVSGNVRSGRQVTEYLD-----SGAD  251 (286)
T ss_dssp             HHHHTTCSEEEEECSS--SCCC-----HHHHHHHHHH-------SCTTCEEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHcCCCEEEEcCCC--CcCC-----HHHHHHHHHh-------cCCCCCEEEEeCCCCHHHHHHHHH-----cCCC
Confidence            345566677 554332  3455     5666666554       333688999999999999999999     7996

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=94.62  E-value=0.11  Score=38.85  Aligned_cols=68  Identities=12%  Similarity=0.050  Sum_probs=44.4

Q ss_pred             hhHHHhhCCCc-c-cCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-R-TLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-K-TSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.+.++|+|| - |..||.+..-+ .   ..+..++.+..+      . ++-|=++|||+|.+++.++++     +|++
T Consensus       142 a~~a~~~Gad~Ig~~~~g~t~~~~~-~---~~~~~~i~~l~~------~-~ipvIA~GGI~t~~d~~~~~~-----~Gad  205 (232)
T 3igs_A          142 GLACQRLGADIIGTTMSGYTTPDTP-E---EPDLPLVKALHD------A-GCRVIAEGRYNSPALAAEAIR-----YGAW  205 (232)
T ss_dssp             HHHHHHTTCSEEECTTTTSSSSSCC-S---SCCHHHHHHHHH------T-TCCEEEESCCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHhCCCCEEEEcCccCCCCCCC-C---CCCHHHHHHHHh------c-CCcEEEECCCCCHHHHHHHHH-----cCCC
Confidence            35678899999 6 45666432211 0   224455443321      1 566779999999999999999     7985


Q ss_pred             ccCCCceeEec
Q psy969           82 WLNKDLFRIGA   92 (106)
Q Consensus        82 w~~~~~~RiGt   92 (106)
                           ..-+|+
T Consensus       206 -----gV~VGs  211 (232)
T 3igs_A          206 -----AVTVGS  211 (232)
T ss_dssp             -----EEEECH
T ss_pred             -----EEEEeh
Confidence                 555664

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=94.51  E-value=0.064  Score=42.68  Aligned_cols=69  Identities=23%  Similarity=0.184  Sum_probs=40.6

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCC-----CCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDST-----SYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~ga-----t~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++.+.++|+|| .-+.|-+....     ..+.|-.+.+..+.+..+      ..++-|=++|||+|.+++.+++.     
T Consensus       208 a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~------~~~ipVia~GGI~~~~d~~~ala-----  276 (404)
T 1eep_A          208 ALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACN------NTNICIIADGGIRFSGDVVKAIA-----  276 (404)
T ss_dssp             HHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHT------TSSCEEEEESCCCSHHHHHHHHH-----
T ss_pred             HHHHHhcCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHh------hcCceEEEECCCCCHHHHHHHHH-----
Confidence            46788999999 77322111000     001111223333333221      23688889999999999999999     


Q ss_pred             CCCCcc
Q psy969           78 LGPDWL   83 (106)
Q Consensus        78 lGa~w~   83 (106)
                      +|++.+
T Consensus       277 ~GAd~V  282 (404)
T 1eep_A          277 AGADSV  282 (404)
T ss_dssp             HTCSEE
T ss_pred             cCCCHH
Confidence            588743

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=94.48  E-value=0.03  Score=44.65  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=30.1

Q ss_pred             HHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        40 ~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+++.++.+++++-|-+.|||+|.+||.+++.     +|++
T Consensus       263 ~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~-----aGAd  299 (345)
T 3oix_A          263 ANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHIL-----CGAS  299 (345)
T ss_dssp             HHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHH-----HTCS
T ss_pred             HHHHHHHHHcCCCCcEEEECCCCChHHHHHHHH-----hCCC
Confidence            344455555677899999999999999999998     5986

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=94.44  E-value=0.067  Score=44.09  Aligned_cols=66  Identities=20%  Similarity=0.240  Sum_probs=41.2

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCC--C-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHH
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDST--S-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVL   75 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~ga--t-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~   75 (106)
                      ++.++++|||| +-+-|  +.+.  +     .+   ..++..+.+..+...   ...+-|=++|||++.+++.+++.   
T Consensus       284 a~~l~~aGaD~I~vg~g--~Gs~~~t~~~~g~g---~p~~~~l~~v~~~~~---~~~iPVIa~GGI~~~~di~kal~---  352 (490)
T 4avf_A          284 AKALAEAGADAVKVGIG--PGSICTTRIVAGVG---VPQISAIANVAAALE---GTGVPLIADGGIRFSGDLAKAMV---  352 (490)
T ss_dssp             HHHHHHTTCSEEEECSS--CSTTCHHHHHTCBC---CCHHHHHHHHHHHHT---TTTCCEEEESCCCSHHHHHHHHH---
T ss_pred             HHHHHHcCCCEEEECCC--CCcCCCccccCCCC---ccHHHHHHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHHH---
Confidence            46788999999 86322  2110  0     01   223444444332211   23577889999999999999999   


Q ss_pred             hhCCCCc
Q psy969           76 IMLGPDW   82 (106)
Q Consensus        76 ~~lGa~w   82 (106)
                        +|++.
T Consensus       353 --~GAd~  357 (490)
T 4avf_A          353 --AGAYC  357 (490)
T ss_dssp             --HTCSE
T ss_pred             --cCCCe
Confidence              58763

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=94.39  E-value=0.12  Score=38.62  Aligned_cols=67  Identities=18%  Similarity=0.073  Sum_probs=44.3

Q ss_pred             hHHHhhCCCc-c-cCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969            5 RKVAFKGSNF-R-TLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus         5 ~iai~aGadF-K-TSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      +.+.++|+|| - |..||.+...+ .   ..+..++.+..    +   .++-|=++|||+|.+++.++++     +|++ 
T Consensus       143 ~~a~~~Gad~Ig~~~~g~t~~~~~-~---~~~~~li~~l~----~---~~ipvIA~GGI~t~~d~~~~~~-----~Gad-  205 (229)
T 3q58_A          143 ISCHQKGIEFIGTTLSGYTGPITP-V---EPDLAMVTQLS----H---AGCRVIAEGRYNTPALAANAIE-----HGAW-  205 (229)
T ss_dssp             HHHHHTTCSEEECTTTTSSSSCCC-S---SCCHHHHHHHH----T---TTCCEEEESSCCSHHHHHHHHH-----TTCS-
T ss_pred             HHHHhCCCCEEEecCccCCCCCcC-C---CCCHHHHHHHH----H---cCCCEEEECCCCCHHHHHHHHH-----cCCC-
Confidence            5678899999 6 45676432211 0   22444444332    1   1577789999999999999999     7985 


Q ss_pred             cCCCceeEec
Q psy969           83 LNKDLFRIGA   92 (106)
Q Consensus        83 ~~~~~~RiGt   92 (106)
                          ..-+|+
T Consensus       206 ----gV~VGs  211 (229)
T 3q58_A          206 ----AVTVGS  211 (229)
T ss_dssp             ----EEEECH
T ss_pred             ----EEEEch
Confidence                555664

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=94.27  E-value=0.15  Score=41.04  Aligned_cols=61  Identities=20%  Similarity=0.225  Sum_probs=40.2

Q ss_pred             hhHHHhhCCCc-ccCCCCCCC-------CCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHH
Q psy969            4 PRKVAFKGSNF-RTLHGRGPD-------STSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVL   75 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~-------gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~   75 (106)
                      ++.++++|||+ +.|.|-+..       +..     ...+..+.+..+    ...   -|=+.|||++..++.+.+.   
T Consensus       155 A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g-----~p~l~aI~~~~~----~~~---PVIAdGGI~~~~di~kALa---  219 (361)
T 3r2g_A          155 ADYLASCGADIIKAGIGGGSVCSTRIKTGFG-----VPMLTCIQDCSR----ADR---SIVADGGIKTSGDIVKALA---  219 (361)
T ss_dssp             HHHHHHTTCSEEEECCSSSSCHHHHHHHCCC-----CCHHHHHHHHTT----SSS---EEEEESCCCSHHHHHHHHH---
T ss_pred             HHHHHHcCCCEEEEcCCCCcCccccccCCcc-----HHHHHHHHHHHH----hCC---CEEEECCCCCHHHHHHHHH---
Confidence            56789999999 875441111       111     224444444321    111   6889999999999999999   


Q ss_pred             hhCCCC
Q psy969           76 IMLGPD   81 (106)
Q Consensus        76 ~~lGa~   81 (106)
                        +|++
T Consensus       220 --~GAd  223 (361)
T 3r2g_A          220 --FGAD  223 (361)
T ss_dssp             --TTCS
T ss_pred             --cCCC
Confidence              7986

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=94.16  E-value=0.16  Score=42.32  Aligned_cols=68  Identities=16%  Similarity=0.093  Sum_probs=42.3

Q ss_pred             hhHHHhhCCCc-ccCCCCCC-CCCCCCCCCchHHHHHHHHHHHHhh-hcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGP-DSTSYGNVCNTCGIIMCSAIKHFHK-LSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP   80 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~-~gat~~~~~~~~v~lm~~~i~~~~~-~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa   80 (106)
                      ++.+.++|+|+ -.|..-+. ....     +..+..+.+..+.+.+ ...+++-|=++||||+.+|+.+++.     +|+
T Consensus       357 A~~a~~aGad~I~vs~hgG~~~d~~-----~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLa-----lGA  426 (511)
T 1kbi_A          357 VIKAAEIGVSGVVLSNHGGRQLDFS-----RAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALC-----LGA  426 (511)
T ss_dssp             HHHHHHTTCSEEEECCTTTTSSTTC-----CCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHH-----HTC
T ss_pred             HHHHHHcCCCEEEEcCCCCccCCCC-----CchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHH-----cCC
Confidence            46788999999 55432111 1111     2334444333222210 1235788999999999999999999     698


Q ss_pred             C
Q psy969           81 D   81 (106)
Q Consensus        81 ~   81 (106)
                      +
T Consensus       427 d  427 (511)
T 1kbi_A          427 K  427 (511)
T ss_dssp             S
T ss_pred             C
Confidence            6

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=94.06  E-value=0.097  Score=43.27  Aligned_cols=67  Identities=21%  Similarity=0.125  Sum_probs=40.6

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCC-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTS-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++.++++|||+ +-+-|-+....+     .+.|-.+.+..+.+++++      ..+-|=++|||++.+|+.+.+.     
T Consensus       286 a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~------~~iPVIa~GGI~~~~di~kala-----  354 (496)
T 4fxs_A          286 ARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANE------YGIPVIADGGIRFSGDISKAIA-----  354 (496)
T ss_dssp             HHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGG------GTCCEEEESCCCSHHHHHHHHH-----
T ss_pred             HHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhcc------CCCeEEEeCCCCCHHHHHHHHH-----
Confidence            46788999999 965442211110     011112333333333321      2366789999999999999999     


Q ss_pred             CCCC
Q psy969           78 LGPD   81 (106)
Q Consensus        78 lGa~   81 (106)
                      +|++
T Consensus       355 ~GAd  358 (496)
T 4fxs_A          355 AGAS  358 (496)
T ss_dssp             TTCS
T ss_pred             cCCC
Confidence            6886

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=93.93  E-value=0.095  Score=42.86  Aligned_cols=68  Identities=19%  Similarity=0.198  Sum_probs=43.0

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCC-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTS-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      ++.++++|+|+ +-+.|.+....|     .+.|-...+..+.+..++    .  .+-|=++|||++.+++.+++.     
T Consensus       310 a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~----~--~ipVia~GGI~~~~di~kala-----  378 (514)
T 1jcn_A          310 AKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARR----F--GVPIIADGGIQTVGHVVKALA-----  378 (514)
T ss_dssp             HHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGG----G--TCCEEEESCCCSHHHHHHHHH-----
T ss_pred             HHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhh----C--CCCEEEECCCCCHHHHHHHHH-----
Confidence            46788999999 885532211111     111223345555444321    1  477889999999999999999     


Q ss_pred             CCCCc
Q psy969           78 LGPDW   82 (106)
Q Consensus        78 lGa~w   82 (106)
                      +|++.
T Consensus       379 ~GAd~  383 (514)
T 1jcn_A          379 LGAST  383 (514)
T ss_dssp             TTCSE
T ss_pred             cCCCe
Confidence            68863

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=93.80  E-value=0.19  Score=38.97  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=23.5

Q ss_pred             CceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +++-|=++|||+|.+|+.+++.     +|++
T Consensus       250 ~~ipvia~GGI~~~~d~~k~l~-----~GAd  275 (349)
T 1p0k_A          250 PASTMIASGGLQDALDVAKAIA-----LGAS  275 (349)
T ss_dssp             TTSEEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             CCCeEEEECCCCCHHHHHHHHH-----cCCC
Confidence            4688889999999999999999     7986

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=93.72  E-value=0.15  Score=42.30  Aligned_cols=67  Identities=24%  Similarity=0.291  Sum_probs=41.8

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCC--CC-----CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHH
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDS--TS-----YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVL   75 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~g--at-----~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~   75 (106)
                      ++.++++|+|+ +-  |.++.+  .+     .+.|-.+.+..+.+..++      -.+-|=++|||++.+|+.+.+.   
T Consensus       311 a~~~~~aGad~i~v--g~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~------~~iPVIa~GGI~~~~di~kala---  379 (511)
T 3usb_A          311 TKALIEAGANVVKV--GIGPGSICTTRVVAGVGVPQLTAVYDCATEARK------HGIPVIADGGIKYSGDMVKALA---  379 (511)
T ss_dssp             HHHHHHHTCSEEEE--CSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHT------TTCCEEEESCCCSHHHHHHHHH---
T ss_pred             HHHHHHhCCCEEEE--CCCCccccccccccCCCCCcHHHHHHHHHHHHh------CCCcEEEeCCCCCHHHHHHHHH---
Confidence            56789999999 85  333221  00     011113333333333322      2477889999999999999999   


Q ss_pred             hhCCCCcc
Q psy969           76 IMLGPDWL   83 (106)
Q Consensus        76 ~~lGa~w~   83 (106)
                        +|++.+
T Consensus       380 --~GA~~V  385 (511)
T 3usb_A          380 --AGAHVV  385 (511)
T ss_dssp             --TTCSEE
T ss_pred             --hCchhh
Confidence              788743

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=93.54  E-value=0.19  Score=40.25  Aligned_cols=25  Identities=36%  Similarity=0.377  Sum_probs=22.9

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++-|=++|||++..|+.+.+.     +|++
T Consensus       267 ~ipvia~GGI~~~~d~~kal~-----lGA~  291 (368)
T 3vkj_A          267 DSFLVGSGGIRSGLDAAKAIA-----LGAD  291 (368)
T ss_dssp             TCEEEEESSCCSHHHHHHHHH-----HTCS
T ss_pred             CCcEEEECCCCCHHHHHHHHH-----cCCC
Confidence            588999999999999999999     6996

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=93.25  E-value=0.53  Score=36.58  Aligned_cols=79  Identities=14%  Similarity=0.221  Sum_probs=53.7

Q ss_pred             hhhHHHhhCCCc-c--cCCCCC------CC----CCCCCCCCch-HHHHHHHHHHHHhhhcCCceeEeecC------CCC
Q psy969            3 RPRKVAFKGSNF-R--TLHGRG------PD----STSYGNVCNT-CGIIMCSAIKHFHKLSGKKIGLKPAG------GIS   62 (106)
Q Consensus         3 ~~~iai~aGadF-K--TSTG~~------~~----gat~~~~~~~-~v~lm~~~i~~~~~~~~~~vgiKaaG------GIr   62 (106)
                      +++.+.++|.|. +  -+.||-      |.    .-.||.. ++ ..+++.+.+++.++....+|+||.+.      |. 
T Consensus       149 aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGs-lenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~-  226 (338)
T 1z41_A          149 AAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGS-PENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGL-  226 (338)
T ss_dssp             HHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSS-HHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSC-
T ss_pred             HHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcc-hhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCC-
Confidence            467788999999 5  455541      21    1112221 33 57778888887777777899999987      44 


Q ss_pred             CHHHHHHHHHHHHhhCCCCccC
Q psy969           63 TFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        63 t~~~a~~~i~l~~~~lGa~w~~   84 (106)
                      +.+++.++....++ +|.+|++
T Consensus       227 ~~~~~~~~a~~l~~-~Gvd~i~  247 (338)
T 1z41_A          227 DIADHIGFAKWMKE-QGVDLID  247 (338)
T ss_dssp             CHHHHHHHHHHHHH-TTCCEEE
T ss_pred             CHHHHHHHHHHHHH-cCCCEEE
Confidence            67888888776654 7999874

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=93.10  E-value=0.21  Score=39.78  Aligned_cols=59  Identities=15%  Similarity=0.118  Sum_probs=40.0

Q ss_pred             hhHHHhhCCCc-ccCCCCCC----CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969            4 PRKVAFKGSNF-RTLHGRGP----DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIML   78 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~----~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l   78 (106)
                      ++.+.++|+|+ +-|...++    ..++     .+.+..+++.+       +.  -|=++|||++.+|+.+++.     +
T Consensus       239 a~~a~~aGad~I~vs~~gg~~~d~~~~~-----~~~l~~v~~~~-------~~--pVia~GGI~~~~dv~kal~-----~  299 (380)
T 1p4c_A          239 ADRCIAEGADGVILSNHGGRQLDCAISP-----MEVLAQSVAKT-------GK--PVLIDSGFRRGSDIVKALA-----L  299 (380)
T ss_dssp             HHHHHHTTCSEEEECCGGGTSCTTCCCG-----GGTHHHHHHHH-------CS--CEEECSSCCSHHHHHHHHH-----T
T ss_pred             HHHHHHcCCCEEEEcCCCCCcCCCCcCH-----HHHHHHHHHHc-------CC--eEEEECCCCCHHHHHHHHH-----h
Confidence            46788999999 76542121    1123     44454444432       22  5789999999999999998     7


Q ss_pred             CCC
Q psy969           79 GPD   81 (106)
Q Consensus        79 Ga~   81 (106)
                      |++
T Consensus       300 GAd  302 (380)
T 1p4c_A          300 GAE  302 (380)
T ss_dssp             TCS
T ss_pred             CCc
Confidence            986

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=92.65  E-value=0.35  Score=34.34  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=21.8

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+-|=++|||++.+++.++++     +|++
T Consensus       198 ~~pvia~GGi~~~~~~~~~~~-----~Ga~  222 (253)
T 1h5y_A          198 RIPVIASGGAGRVEHFYEAAA-----AGAD  222 (253)
T ss_dssp             SSCEEEESCCCSHHHHHHHHH-----TTCS
T ss_pred             CCCEEEeCCCCCHHHHHHHHH-----cCCc
Confidence            466788999999999999997     7885

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=92.37  E-value=0.19  Score=38.44  Aligned_cols=20  Identities=40%  Similarity=0.632  Sum_probs=18.4

Q ss_pred             ecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           57 PAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        57 aaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++|||+|.+++.++++     +|++
T Consensus       214 a~GGI~~~~d~~~~~~-----~Gad  233 (305)
T 2nv1_A          214 AAGGVATPADAALMMQ-----LGAD  233 (305)
T ss_dssp             BCSCCCSHHHHHHHHH-----TTCS
T ss_pred             eccCCCCHHHHHHHHH-----cCCC
Confidence            8899999999999998     7886

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=92.29  E-value=0.15  Score=40.06  Aligned_cols=22  Identities=18%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             CceeEeecCCCCCHHHHHHHHH
Q psy969           51 KKIGLKPAGGISTFEDSVRWIY   72 (106)
Q Consensus        51 ~~vgiKaaGGIrt~~~a~~~i~   72 (106)
                      +++-|-++|||+|.+++.++++
T Consensus       196 ~~iPVianGgI~s~eda~~~l~  217 (350)
T 3b0p_A          196 PQLTFVTNGGIRSLEEALFHLK  217 (350)
T ss_dssp             TTSEEEEESSCCSHHHHHHHHT
T ss_pred             CCCeEEEECCcCCHHHHHHHHh
Confidence            3688999999999999999985

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=92.26  E-value=0.34  Score=38.94  Aligned_cols=27  Identities=26%  Similarity=0.407  Sum_probs=24.5

Q ss_pred             CCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        50 ~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+++-|=++||||+..|+.+.+.     +|++
T Consensus       276 ~~~ipvia~GGI~~g~Dv~KaLa-----lGAd  302 (365)
T 3sr7_A          276 MDKVEILASGGIRHPLDIIKALV-----LGAK  302 (365)
T ss_dssp             TTTSEEEECSSCCSHHHHHHHHH-----HTCS
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHH-----cCCC
Confidence            45789999999999999999999     6996

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=91.54  E-value=0.83  Score=36.23  Aligned_cols=78  Identities=22%  Similarity=0.120  Sum_probs=44.0

Q ss_pred             hHHHhhCCCc-ccCCCC---CCCC----CCCCCCCchH-HHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHH
Q psy969            5 RKVAFKGSNF-RTLHGR---GPDS----TSYGNVCNTC-GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVL   75 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~---~~~g----at~~~~~~~~-v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~   75 (106)
                      +...++|+|+ --=-|+   +-.|    .+     .++ .+++.+..+..++..++-+-+=-+|||.+.+|+...+++. 
T Consensus       177 ~amA~agpDiI~~h~glT~gglIG~~~avs-----~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t-  250 (286)
T 2p10_A          177 VAMAKAGADILVCHMGLTTGGAIGARSGKS-----MDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSC-  250 (286)
T ss_dssp             HHHHHHTCSEEEEECSCC---------CCC-----HHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHC-
T ss_pred             HHHHHcCCCEEEECCCCCCCCcccCCCccc-----HHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcC-
Confidence            4567889998 322221   1111    23     333 4444444443333344444444556999999999999931 


Q ss_pred             hhCCCCccCCCceeEeccchH
Q psy969           76 IMLGPDWLNKDLFRIGASSLL   96 (106)
Q Consensus        76 ~~lGa~w~~~~~~RiGtSs~~   96 (106)
                        -|++      --+|+|+..
T Consensus       251 --~G~~------G~~gASsie  263 (286)
T 2p10_A          251 --QGCH------GFYGASSME  263 (286)
T ss_dssp             --TTCC------EEEESHHHH
T ss_pred             --CCcc------EEEeehhhh
Confidence              1665      568888754

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=91.48  E-value=0.68  Score=36.64  Aligned_cols=81  Identities=15%  Similarity=0.230  Sum_probs=51.4

Q ss_pred             hhhHHHhhCCCc-c--cCCCC------CCC----CCCCCCCCchHHHHHHHHHHHHhhhcCC-ceeEeecCC--CC----
Q psy969            3 RPRKVAFKGSNF-R--TLHGR------GPD----STSYGNVCNTCGIIMCSAIKHFHKLSGK-KIGLKPAGG--IS----   62 (106)
Q Consensus         3 ~~~iai~aGadF-K--TSTG~------~~~----gat~~~~~~~~v~lm~~~i~~~~~~~~~-~vgiKaaGG--Ir----   62 (106)
                      +++.|.++|.|. .  -+.||      .|.    .-.||..=....+++.+.+++.++.+++ .|+||.+.+  ..    
T Consensus       166 aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~  245 (364)
T 1vyr_A          166 AVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDN  245 (364)
T ss_dssp             HHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCC
T ss_pred             HHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccC
Confidence            466788999999 5  34554      121    1112221133567777777777777764 899999976  32    


Q ss_pred             ---CHHHHHHHHHHHHhhCCCCccC
Q psy969           63 ---TFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        63 ---t~~~a~~~i~l~~~~lGa~w~~   84 (106)
                         +.+++.++.+..++ +|++|++
T Consensus       246 ~~~~~~~~~~~a~~l~~-~G~d~i~  269 (364)
T 1vyr_A          246 GPNEEADALYLIEELAK-RGIAYLH  269 (364)
T ss_dssp             CTTHHHHHHHHHHHHHH-TTCSEEE
T ss_pred             CCCCHHHHHHHHHHHHH-hCCCEEE
Confidence               56677777665543 6998863

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=91.26  E-value=0.81  Score=36.42  Aligned_cols=80  Identities=11%  Similarity=0.087  Sum_probs=51.6

Q ss_pred             hhhHHHhhCCCc-c--cCCCC------CCC----CCCCCCCCchHHHHHHHHHHHHhhhcCC-ceeEeecCC-----C--
Q psy969            3 RPRKVAFKGSNF-R--TLHGR------GPD----STSYGNVCNTCGIIMCSAIKHFHKLSGK-KIGLKPAGG-----I--   61 (106)
Q Consensus         3 ~~~iai~aGadF-K--TSTG~------~~~----gat~~~~~~~~v~lm~~~i~~~~~~~~~-~vgiKaaGG-----I--   61 (106)
                      +++.|.++|.|. +  -+.||      .|.    .-.||..=....+++++.+++.++.++. .|+||.+..     +  
T Consensus       172 AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~  251 (376)
T 1icp_A          172 AARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGD  251 (376)
T ss_dssp             HHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCC
T ss_pred             HHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCC
Confidence            567888999999 5  44554      121    1112221133578888888888887874 899999853     2  


Q ss_pred             -CCHHHHHHHHHHHHhhCCCCcc
Q psy969           62 -STFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus        62 -rt~~~a~~~i~l~~~~lGa~w~   83 (106)
                       .+.+++.++.+..++ +|.+|+
T Consensus       252 ~~~~~~~~~la~~le~-~Gvd~i  273 (376)
T 1icp_A          252 TNPTALGLYMVESLNK-YDLAYC  273 (376)
T ss_dssp             SCHHHHHHHHHHHHGG-GCCSEE
T ss_pred             CCCHHHHHHHHHHHHH-cCCCEE
Confidence             245677777766544 589886

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=91.03  E-value=0.44  Score=36.59  Aligned_cols=66  Identities=12%  Similarity=0.123  Sum_probs=41.4

Q ss_pred             hHHHhhCCCc-ccCCCCC--CCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-RTLHGRG--PDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~--~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.+.|+|+ .+. +..  .....     ++..+-+.       +..+..+-+=+.|||+|.+++.++.+     +|++
T Consensus       176 ~~A~~~Gad~IGv~-~r~l~~~~~d-----l~~~~~l~-------~~v~~~~pvVaegGI~t~edv~~l~~-----~Gad  237 (272)
T 3qja_A          176 DRALKAGAKVIGVN-ARDLMTLDVD-----RDCFARIA-------PGLPSSVIRIAESGVRGTADLLAYAG-----AGAD  237 (272)
T ss_dssp             HHHHHHTCSEEEEE-SBCTTTCCBC-----TTHHHHHG-------GGSCTTSEEEEESCCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHCCCCEEEEC-CCcccccccC-----HHHHHHHH-------HhCcccCEEEEECCCCCHHHHHHHHH-----cCCC
Confidence            4567889999 543 221  11222     34333332       22444566778999999999999999     7884


Q ss_pred             ccCCCceeEecc
Q psy969           82 WLNKDLFRIGAS   93 (106)
Q Consensus        82 w~~~~~~RiGtS   93 (106)
                           .+-+|++
T Consensus       238 -----gvlVGsa  244 (272)
T 3qja_A          238 -----AVLVGEG  244 (272)
T ss_dssp             -----EEEECHH
T ss_pred             -----EEEEcHH
Confidence                 5556653

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=91.01  E-value=0.57  Score=35.38  Aligned_cols=59  Identities=17%  Similarity=0.101  Sum_probs=36.4

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCC---CCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDS---TSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~g---at~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG   79 (106)
                      .+.+.+.|+|| -...|....+   .+     ++.++.+++.       .  ++-|=+.|||+|.+++.++++     +|
T Consensus       140 a~~~~~~gad~v~~~~~~~Gt~~~~~~-----~~~l~~i~~~-------~--~iPviv~gGI~t~eda~~~~~-----~G  200 (264)
T 1xm3_A          140 ARKLEELGVHAIMPGASPIGSGQGILN-----PLNLSFIIEQ-------A--KVPVIVDAGIGSPKDAAYAME-----LG  200 (264)
T ss_dssp             HHHHHHHTCSCBEECSSSTTCCCCCSC-----HHHHHHHHHH-------C--SSCBEEESCCCSHHHHHHHHH-----TT
T ss_pred             HHHHHHhCCCEEEECCcccCCCCCCCC-----HHHHHHHHhc-------C--CCCEEEEeCCCCHHHHHHHHH-----cC
Confidence            45677889999 5433321111   12     4444444332       2  344445689999999999999     79


Q ss_pred             CC
Q psy969           80 PD   81 (106)
Q Consensus        80 a~   81 (106)
                      ++
T Consensus       201 Ad  202 (264)
T 1xm3_A          201 AD  202 (264)
T ss_dssp             CS
T ss_pred             CC
Confidence            86

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=90.77  E-value=0.14  Score=40.92  Aligned_cols=27  Identities=22%  Similarity=0.196  Sum_probs=24.0

Q ss_pred             CCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        50 ~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+++-|-+.|||+|.+||.+++.     +|++
T Consensus       275 ~~~ipII~~GGI~s~~da~~~l~-----aGAd  301 (354)
T 4ef8_A          275 CPGKLIFGCGGVYTGEDAFLHVL-----AGAS  301 (354)
T ss_dssp             CTTSEEEEESCCCSHHHHHHHHH-----HTEE
T ss_pred             CCCCCEEEECCcCCHHHHHHHHH-----cCCC
Confidence            35789999999999999999998     5885

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=90.63  E-value=0.4  Score=42.44  Aligned_cols=35  Identities=17%  Similarity=0.367  Sum_probs=27.1

Q ss_pred             HHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        41 ~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .++++++.. +++-|=++|||+|.+||.+++.     +|++
T Consensus       777 ~v~~v~~~~-~~ipvi~~GGI~s~~da~~~l~-----~Ga~  811 (1025)
T 1gte_A          777 AVTTIARAL-PGFPILATGGIDSAESGLQFLH-----SGAS  811 (1025)
T ss_dssp             HHHHHHHHS-TTCCEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHHHc-CCCCEEEecCcCCHHHHHHHHH-----cCCC
Confidence            333444444 4588999999999999999999     7985

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=90.50  E-value=1.3  Score=34.56  Aligned_cols=79  Identities=18%  Similarity=0.235  Sum_probs=52.9

Q ss_pred             hhhHHHhhCCCc-c--cCCCCC------CC----CCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeecC------C
Q psy969            3 RPRKVAFKGSNF-R--TLHGRG------PD----STSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPAG------G   60 (106)
Q Consensus         3 ~~~iai~aGadF-K--TSTG~~------~~----gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaaG------G   60 (106)
                      +++.|.++|.|. .  -+.||-      |.    .-.||.. ++ ..+++++.+++.++.+++  .|+||.+.      |
T Consensus       157 aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGs-lenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g  235 (349)
T 3hgj_A          157 GARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGS-LENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGG  235 (349)
T ss_dssp             HHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSS-HHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTS
T ss_pred             HHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcC-HHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCC
Confidence            567888999998 3  455542      21    1112221 44 578888888888888864  49999995      4


Q ss_pred             CCCHHHHHHHHHHHHhhCCCCccC
Q psy969           61 ISTFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        61 Irt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                       -+.+++.++.+..++ +|.+|++
T Consensus       236 -~~~~~~~~la~~L~~-~Gvd~i~  257 (349)
T 3hgj_A          236 -WSLEDTLAFARRLKE-LGVDLLD  257 (349)
T ss_dssp             -CCHHHHHHHHHHHHH-TTCCEEE
T ss_pred             -CCHHHHHHHHHHHHH-cCCCEEE
Confidence             467888877776544 6999874

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=90.20  E-value=1.1  Score=36.42  Aligned_cols=79  Identities=11%  Similarity=0.151  Sum_probs=53.0

Q ss_pred             hhhHHHhhCCCc-c--cCCCCC------C----CCCCCCCCCc-h-HHHHHHHHHHHHhhhc----CC--ceeEeecC--
Q psy969            3 RPRKVAFKGSNF-R--TLHGRG------P----DSTSYGNVCN-T-CGIIMCSAIKHFHKLS----GK--KIGLKPAG--   59 (106)
Q Consensus         3 ~~~iai~aGadF-K--TSTG~~------~----~gat~~~~~~-~-~v~lm~~~i~~~~~~~----~~--~vgiKaaG--   59 (106)
                      |++.|.++|.|. -  -..||-      |    ..-.||.. + + ..+++++.+++.++.+    ++  .|+||.+.  
T Consensus       175 AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs-~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~  253 (419)
T 3l5a_A          175 ATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGAD-SLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPEE  253 (419)
T ss_dssp             HHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTT-CHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSCE
T ss_pred             HHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCc-hhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEeccccc
Confidence            577899999998 3  344431      2    11112211 4 4 4677777777776666    22  69999987  


Q ss_pred             ------CCCCHHHHHHHHHHHHhhCCCCcc
Q psy969           60 ------GISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus        60 ------GIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                            |+ +.++..++++..++.+|.+++
T Consensus       254 ~~~~~~G~-~~ed~~~la~~L~~~~Gvd~I  282 (419)
T 3l5a_A          254 TRGSDLGY-TIDEFNQLIDWVMDVSNIQYL  282 (419)
T ss_dssp             EETTEEEE-CHHHHHHHHHHHHHHSCCCCE
T ss_pred             ccCCCCCC-CHHHHHHHHHHHHhhcCCcEE
Confidence                  55 589999999988876899986

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=90.16  E-value=1.1  Score=33.62  Aligned_cols=20  Identities=45%  Similarity=0.594  Sum_probs=18.7

Q ss_pred             ecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           57 PAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        57 aaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++|||+|.+++.++++     +|++
T Consensus       214 a~GGI~~~e~i~~~~~-----aGad  233 (297)
T 2zbt_A          214 AAGGIATPADAALMMH-----LGMD  233 (297)
T ss_dssp             BCSSCCSHHHHHHHHH-----TTCS
T ss_pred             eeCCCCCHHHHHHHHH-----cCCC
Confidence            8999999999999999     7986

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=90.01  E-value=0.41  Score=37.74  Aligned_cols=60  Identities=18%  Similarity=0.097  Sum_probs=44.0

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.|+++|+|+ .=-+      -+     +++++...+.+       ++++.|=+|||| |++.+.+|.+     .|+|  
T Consensus       212 ~eAl~aGaD~I~LDn------~~-----~~~l~~av~~~-------~~~v~ieaSGGI-t~~~i~~~a~-----tGVD--  265 (287)
T 3tqv_A          212 NQAIAAKADIVMLDN------FS-----GEDIDIAVSIA-------RGKVALEVSGNI-DRNSIVAIAK-----TGVD--  265 (287)
T ss_dssp             HHHHHTTCSEEEEES------CC-----HHHHHHHHHHH-------TTTCEEEEESSC-CTTTHHHHHT-----TTCS--
T ss_pred             HHHHHcCCCEEEEcC------CC-----HHHHHHHHHhh-------cCCceEEEECCC-CHHHHHHHHH-----cCCC--
Confidence            4678899999 5322      34     66655554443       478999999999 7888999998     7997  


Q ss_pred             CCCceeEeccch
Q psy969           84 NKDLFRIGASSL   95 (106)
Q Consensus        84 ~~~~~RiGtSs~   95 (106)
                           .|+.+++
T Consensus       266 -----~IsvGal  272 (287)
T 3tqv_A          266 -----FISVGAI  272 (287)
T ss_dssp             -----EEECSHH
T ss_pred             -----EEEEChh
Confidence                 7777654

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=89.94  E-value=0.65  Score=35.97  Aligned_cols=67  Identities=19%  Similarity=0.100  Sum_probs=44.5

Q ss_pred             hHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969            5 RKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus         5 ~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      +.|.+.|+|+  -|......-...     ++...-+.+.       .+..+-+=+-|||+|.+|+.++.+     +|++ 
T Consensus       183 ~~A~~~ga~iIGinnr~l~t~~~d-----l~~~~~L~~~-------ip~~~~vIaesGI~t~edv~~l~~-----~Ga~-  244 (272)
T 3tsm_A          183 ERALKLSSRLLGVNNRNLRSFEVN-----LAVSERLAKM-------APSDRLLVGESGIFTHEDCLRLEK-----SGIG-  244 (272)
T ss_dssp             HHHTTSCCSEEEEECBCTTTCCBC-----THHHHHHHHH-------SCTTSEEEEESSCCSHHHHHHHHT-----TTCC-
T ss_pred             HHHHhcCCCEEEECCCCCccCCCC-----hHHHHHHHHh-------CCCCCcEEEECCCCCHHHHHHHHH-----cCCC-
Confidence            4567889999  554443332334     4444444443       345566667789999999999999     7884 


Q ss_pred             cCCCceeEecc
Q psy969           83 LNKDLFRIGAS   93 (106)
Q Consensus        83 ~~~~~~RiGtS   93 (106)
                          .+-+|++
T Consensus       245 ----gvLVG~a  251 (272)
T 3tsm_A          245 ----TFLIGES  251 (272)
T ss_dssp             ----EEEECHH
T ss_pred             ----EEEEcHH
Confidence                6777764

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=89.93  E-value=1.2  Score=34.94  Aligned_cols=80  Identities=16%  Similarity=0.176  Sum_probs=52.4

Q ss_pred             hhhHHHhhCCCc-c--cCCCC------CCC----CCCCCCCCch-HHHHHHHHHHHHhhhcCCceeEeecCC-----CCC
Q psy969            3 RPRKVAFKGSNF-R--TLHGR------GPD----STSYGNVCNT-CGIIMCSAIKHFHKLSGKKIGLKPAGG-----IST   63 (106)
Q Consensus         3 ~~~iai~aGadF-K--TSTG~------~~~----gat~~~~~~~-~v~lm~~~i~~~~~~~~~~vgiKaaGG-----Irt   63 (106)
                      +++.|.++|.|. .  -+.||      .|.    .-.||. +++ ..+++++.+++.++.+...|+||.+..     =-+
T Consensus       149 aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGG-slenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~  227 (340)
T 3gr7_A          149 GARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGG-SPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLT  227 (340)
T ss_dssp             HHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSS-SHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCC
T ss_pred             HHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccC-CHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCC
Confidence            567888999998 3  44443      121    111222 155 578888888888887877899999953     135


Q ss_pred             HHHHHHHHHHHHhhCCCCccC
Q psy969           64 FEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        64 ~~~a~~~i~l~~~~lGa~w~~   84 (106)
                      .++..++.+..++ +|.+|++
T Consensus       228 ~~~~~~la~~L~~-~Gvd~i~  247 (340)
T 3gr7_A          228 AKDYVPYAKRMKE-QGVDLVD  247 (340)
T ss_dssp             GGGHHHHHHHHHH-TTCCEEE
T ss_pred             HHHHHHHHHHHHH-cCCCEEE
Confidence            6777777665544 6998864

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=89.88  E-value=0.56  Score=33.62  Aligned_cols=60  Identities=12%  Similarity=0.046  Sum_probs=37.3

Q ss_pred             hHHHhhCCCc-ccCCCCCC---CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969            5 RKVAFKGSNF-RTLHGRGP---DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP   80 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~---~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa   80 (106)
                      +.+.+.|+|| -.++.|..   .+..     +.....+.+..    +..  ++-|=++||| +.+++.++++     +|+
T Consensus       124 ~~a~~~gaD~i~~~~~f~~~~~~g~~-----~~~~~~l~~~~----~~~--~~pvia~GGI-~~~nv~~~~~-----~Ga  186 (221)
T 1yad_A          124 VQAEKEDADYVLFGHVFETDCKKGLE-----GRGVSLLSDIK----QRI--SIPVIAIGGM-TPDRLRDVKQ-----AGA  186 (221)
T ss_dssp             HHHHHTTCSEEEEECCC---------------CHHHHHHHHH----HHC--CSCEEEESSC-CGGGHHHHHH-----TTC
T ss_pred             HHHHhCCCCEEEECCccccCCCCCCC-----CCCHHHHHHHH----HhC--CCCEEEECCC-CHHHHHHHHH-----cCC
Confidence            4567889999 77665532   1112     33444443322    112  4668889999 9999999999     798


Q ss_pred             C
Q psy969           81 D   81 (106)
Q Consensus        81 ~   81 (106)
                      +
T Consensus       187 ~  187 (221)
T 1yad_A          187 D  187 (221)
T ss_dssp             S
T ss_pred             C
Confidence            6

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=89.85  E-value=0.6  Score=36.64  Aligned_cols=64  Identities=13%  Similarity=0.106  Sum_probs=37.3

Q ss_pred             hhHHHhhCCCc-ccCCCC-CCCCCCCCCCC-chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC-
Q psy969            4 PRKVAFKGSNF-RTLHGR-GPDSTSYGNVC-NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG-   79 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~-~~~gat~~~~~-~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG-   79 (106)
                      ++...++|+|| --+.|. .+.....+... .+.++.+++.       +  ++-|=+.|||+|.++|.++++     .| 
T Consensus       235 a~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~-------~--~iPVi~~GgI~s~e~a~~~L~-----~G~  300 (340)
T 3gr7_A          235 AKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRRE-------A--DIPTGAVGLITSGWQAEEILQ-----NGR  300 (340)
T ss_dssp             HHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH-------T--TCCEEEESSCCCHHHHHHHHH-----TTS
T ss_pred             HHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHH-------c--CCcEEeeCCCCCHHHHHHHHH-----CCC
Confidence            45667889999 666553 22100000000 2223333332       2  355678899999999999999     57 


Q ss_pred             CC
Q psy969           80 PD   81 (106)
Q Consensus        80 a~   81 (106)
                      +|
T Consensus       301 aD  302 (340)
T 3gr7_A          301 AD  302 (340)
T ss_dssp             CS
T ss_pred             ee
Confidence            64

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=89.71  E-value=0.67  Score=33.84  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=21.0

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+-|=+.|||+|.+++.++++     .|++
T Consensus        79 ~ipvi~~Ggi~~~~~~~~~l~-----~Gad  103 (247)
T 3tdn_A           79 TLPIIASGGAGKMEHFLEAFL-----RGAD  103 (247)
T ss_dssp             CSCEEEESCCCSHHHHHHHHH-----TTCS
T ss_pred             CCCEEEeCCCCCHHHHHHHHH-----cCCC
Confidence            355667899999999999998     6886

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=89.52  E-value=0.49  Score=37.61  Aligned_cols=60  Identities=12%  Similarity=0.038  Sum_probs=42.9

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.|+++|+|. .==      +-+     +++++...+.+       ++++.|=+|||| |++.+.+|.+     .|+|  
T Consensus       221 ~eAl~aGaDiImLD------n~s-----~~~l~~av~~~-------~~~v~leaSGGI-t~~~i~~~A~-----tGVD--  274 (300)
T 3l0g_A          221 EESLSNNVDMILLD------NMS-----ISEIKKAVDIV-------NGKSVLEVSGCV-NIRNVRNIAL-----TGVD--  274 (300)
T ss_dssp             HHHHHTTCSEEEEE------SCC-----HHHHHHHHHHH-------TTSSEEEEESSC-CTTTHHHHHT-----TTCS--
T ss_pred             HHHHHcCCCEEEEC------CCC-----HHHHHHHHHhh-------cCceEEEEECCC-CHHHHHHHHH-----cCCC--
Confidence            4678889998 532      234     65555444433       468999999999 7889999998     7997  


Q ss_pred             CCCceeEeccch
Q psy969           84 NKDLFRIGASSL   95 (106)
Q Consensus        84 ~~~~~RiGtSs~   95 (106)
                           .|+++++
T Consensus       275 -----~IsvGal  281 (300)
T 3l0g_A          275 -----YISIGCI  281 (300)
T ss_dssp             -----EEECGGG
T ss_pred             -----EEEeCcc
Confidence                 7766553

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=88.74  E-value=1.8  Score=34.43  Aligned_cols=81  Identities=9%  Similarity=0.096  Sum_probs=51.7

Q ss_pred             hhhHHHhhCCCc-cc--CCCCC------CC----CCCCCCCCchHHHHHHHHHHHHhhhcCC-ceeEeecCCC-------
Q psy969            3 RPRKVAFKGSNF-RT--LHGRG------PD----STSYGNVCNTCGIIMCSAIKHFHKLSGK-KIGLKPAGGI-------   61 (106)
Q Consensus         3 ~~~iai~aGadF-KT--STG~~------~~----gat~~~~~~~~v~lm~~~i~~~~~~~~~-~vgiKaaGGI-------   61 (106)
                      +++.|.++|.|. .-  +.||-      |.    .-.||..-....+++++.+++.++.++. .|+||.+..-       
T Consensus       171 aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~  250 (377)
T 2r14_A          171 AAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTD  250 (377)
T ss_dssp             HHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCC
T ss_pred             HHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCC
Confidence            467788999998 53  44431      11    1122221133577888888877777764 8999987531       


Q ss_pred             -CCHHHHHHHHHHHHhhCCCCccC
Q psy969           62 -STFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        62 -rt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                       -+.+++.++.+..++ +|++|++
T Consensus       251 ~~~~~~~~~la~~le~-~Gvd~i~  273 (377)
T 2r14_A          251 DEPEAMAFYLAGELDR-RGLAYLH  273 (377)
T ss_dssp             SCHHHHHHHHHHHHHH-TTCSEEE
T ss_pred             CCCHHHHHHHHHHHHH-cCCCEEE
Confidence             246777777766554 6998863

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=88.65  E-value=1.1  Score=32.33  Aligned_cols=59  Identities=15%  Similarity=0.113  Sum_probs=37.3

Q ss_pred             hhHHHhhCCCc--ccCCCCCC--CCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969            4 PRKVAFKGSNF--RTLHGRGP--DSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~--~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG   79 (106)
                      .+.+.+.|++.  -|+++...  .+..     .+.++.+++.       .  ++-|=++|||++.+++.++++     .|
T Consensus       158 ~~~~~~~G~~~i~~~~~~~~g~~~g~~-----~~~i~~l~~~-------~--~ipvia~GGI~~~~d~~~~~~-----~G  218 (252)
T 1ka9_F          158 AVKGVELGAGEILLTSMDRDGTKEGYD-----LRLTRMVAEA-------V--GVPVIASGGAGRMEHFLEAFQ-----AG  218 (252)
T ss_dssp             HHHHHHHTCCEEEEEETTTTTTCSCCC-----HHHHHHHHHH-------C--SSCEEEESCCCSHHHHHHHHH-----TT
T ss_pred             HHHHHHcCCCEEEEecccCCCCcCCCC-----HHHHHHHHHH-------c--CCCEEEeCCCCCHHHHHHHHH-----CC
Confidence            35566789994  67654321  1122     3333333322       2  466778999999999999997     68


Q ss_pred             CC
Q psy969           80 PD   81 (106)
Q Consensus        80 a~   81 (106)
                      ++
T Consensus       219 ad  220 (252)
T 1ka9_F          219 AE  220 (252)
T ss_dssp             CS
T ss_pred             CH
Confidence            75

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=88.59  E-value=0.3  Score=35.42  Aligned_cols=54  Identities=15%  Similarity=0.105  Sum_probs=33.1

Q ss_pred             hHHHhhCCCc--ccCCC--CCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHH
Q psy969            5 RKVAFKGSNF--RTLHG--RGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIY   72 (106)
Q Consensus         5 ~iai~aGadF--KTSTG--~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~   72 (106)
                      +.+.+.|+|.  -|+.-  +...+..     .+.++.+++.         -.+-|=++|||++.+++.++++
T Consensus       153 ~~~~~~G~~~i~~~~~~~~~~~~g~~-----~~~~~~i~~~---------~~ipvia~GGI~~~~d~~~~~~  210 (244)
T 1vzw_A          153 DRLNKEGCARYVVTDIAKDGTLQGPN-----LELLKNVCAA---------TDRPVVASGGVSSLDDLRAIAG  210 (244)
T ss_dssp             HHHHHTTCCCEEEEEC-------CCC-----HHHHHHHHHT---------CSSCEEEESCCCSHHHHHHHHT
T ss_pred             HHHHhCCCCEEEEeccCcccccCCCC-----HHHHHHHHHh---------cCCCEEEECCCCCHHHHHHHHh
Confidence            4566789996  55532  1112223     3333333321         2467889999999999999998

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=88.15  E-value=1.1  Score=34.80  Aligned_cols=63  Identities=11%  Similarity=0.108  Sum_probs=43.7

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.++++|+|+ -=-+      -+     +++++...+.++..    .+++.|=+|||| |++...+|.+     .|+|  
T Consensus       208 ~eal~aGaD~I~LDn------~~-----~~~~~~~v~~l~~~----~~~v~ieaSGGI-t~~~i~~~a~-----tGVD--  264 (284)
T 1qpo_A          208 DAVLPEKPELILLDN------FA-----VWQTQTAVQRRDSR----APTVMLESSGGL-SLQTAATYAE-----TGVD--  264 (284)
T ss_dssp             HHHGGGCCSEEEEET------CC-----HHHHHHHHHHHHHH----CTTCEEEEESSC-CTTTHHHHHH-----TTCS--
T ss_pred             HHHHHcCCCEEEECC------CC-----HHHHHHHHHHhhcc----CCCeEEEEECCC-CHHHHHHHHh-----cCCC--
Confidence            4567789998 4322      34     66665555544321    357899999999 6899999999     7996  


Q ss_pred             CCCceeEeccch
Q psy969           84 NKDLFRIGASSL   95 (106)
Q Consensus        84 ~~~~~RiGtSs~   95 (106)
                           .|+++++
T Consensus       265 -----~isvG~l  271 (284)
T 1qpo_A          265 -----YLAVGAL  271 (284)
T ss_dssp             -----EEECGGG
T ss_pred             -----EEEECHH
Confidence                 7776664

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=88.11  E-value=1.2  Score=34.66  Aligned_cols=61  Identities=13%  Similarity=0.156  Sum_probs=43.3

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.|.++|||| --.+      -+     ++.++...+.+       ++++.+=+||||. ++.+.+|.+     .|++  
T Consensus       210 ~eA~~aGaD~I~ld~------~~-----~~~~k~av~~v-------~~~ipi~AsGGIt-~eni~~~a~-----tGvD--  263 (286)
T 1x1o_A          210 EEALEAGADLILLDN------FP-----LEALREAVRRV-------GGRVPLEASGNMT-LERAKAAAE-----AGVD--  263 (286)
T ss_dssp             HHHHHHTCSEEEEES------CC-----HHHHHHHHHHH-------TTSSCEEEESSCC-HHHHHHHHH-----HTCS--
T ss_pred             HHHHHcCCCEEEECC------CC-----HHHHHHHHHHh-------CCCCeEEEEcCCC-HHHHHHHHH-----cCCC--
Confidence            4677899999 5443      23     55655444332       3578899999995 999999999     6996  


Q ss_pred             CCCceeEeccchH
Q psy969           84 NKDLFRIGASSLL   96 (106)
Q Consensus        84 ~~~~~RiGtSs~~   96 (106)
                           .|+.+++.
T Consensus       264 -----~IsVgs~~  271 (286)
T 1x1o_A          264 -----YVSVGALT  271 (286)
T ss_dssp             -----EEECTHHH
T ss_pred             -----EEEEcHHH
Confidence                 77776643

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=87.61  E-value=0.36  Score=37.66  Aligned_cols=37  Identities=22%  Similarity=0.230  Sum_probs=26.8

Q ss_pred             HHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           39 CSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        39 ~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.+++.++..+ .+-|=..|||+|.+||.++|.     +||+
T Consensus       265 ~~~v~~~~~~~~-~~pIIg~GGI~s~~Da~e~i~-----aGAs  301 (354)
T 3tjx_A          265 LANINAFYRRCP-GKLIFGCGGVYTGEDAFLHVL-----AGAS  301 (354)
T ss_dssp             HHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHH-----HTEE
T ss_pred             HHHHHHHHHhcC-CCcEEEeCCcCCHHHHHHHHH-----cCCC
Confidence            344444444443 445668899999999999998     6986

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=87.08  E-value=3.2  Score=32.42  Aligned_cols=31  Identities=32%  Similarity=0.354  Sum_probs=23.6

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEec
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA   92 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGt   92 (106)
                      ++-+=+.|||+|.+++.++++     +|++     .+-+|+
T Consensus       209 PVivvA~GGI~t~~dv~~~~~-----~GAd-----gVlVGs  239 (297)
T 4adt_A          209 PVVNFAAGGIATPADAAMCMQ-----LGMD-----GVFVGS  239 (297)
T ss_dssp             SSEEEEESCCCSHHHHHHHHH-----TTCS-----CEEESH
T ss_pred             CeEEEecCCCCCHHHHHHHHH-----cCCC-----EEEEhH
Confidence            343338999999999999999     7985     455564

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=87.00  E-value=1  Score=42.60  Aligned_cols=71  Identities=18%  Similarity=0.131  Sum_probs=42.1

Q ss_pred             hHHHhhCCCcccCCCCCC-CCCCC-------CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHh
Q psy969            5 RKVAFKGSNFRTLHGRGP-DSTSY-------GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLI   76 (106)
Q Consensus         5 ~iai~aGadFKTSTG~~~-~gat~-------~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~   76 (106)
                      +.+.++|||+-+-.|... .+++.       +-|-...+..+.+++++.  ....+|-|=++|||+|..|+.+.+.    
T Consensus      1011 ~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~al~~~--glr~~VpVIAdGGIrtG~DVakALa---- 1084 (1479)
T 1ea0_A         1011 AGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLN--RLRHRVRLRTDGGLKTGRDIVIAAM---- 1084 (1479)
T ss_dssp             HHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTT--TCTTTSEEEEESSCCSHHHHHHHHH----
T ss_pred             HHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHHHHHHHc--CCCCCceEEEECCCCCHHHHHHHHH----
Confidence            457789999933445432 12220       111122233333322110  1235799999999999999999999    


Q ss_pred             hCCCCc
Q psy969           77 MLGPDW   82 (106)
Q Consensus        77 ~lGa~w   82 (106)
                       |||++
T Consensus      1085 -LGAda 1089 (1479)
T 1ea0_A         1085 -LGAEE 1089 (1479)
T ss_dssp             -TTCSE
T ss_pred             -cCCCe
Confidence             79973

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=86.87  E-value=1.2  Score=34.52  Aligned_cols=63  Identities=10%  Similarity=0.010  Sum_probs=36.9

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCC-CCC-C-chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSY-GNV-C-NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~-~~~-~-~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG   79 (106)
                      ++...++|+|| --+.|... .... ..+ . .+.++.+++.       +  ++-|=+.|||+|.++|.++++     .|
T Consensus       235 a~~l~~~Gvd~i~v~~~~~~-~~~~~~~~~~~~~~~~~ir~~-------~--~iPVi~~Ggi~s~~~a~~~l~-----~G  299 (338)
T 1z41_A          235 AKWMKEQGVDLIDCSSGALV-HADINVFPGYQVSFAEKIREQ-------A--DMATGAVGMITDGSMAEEILQ-----NG  299 (338)
T ss_dssp             HHHHHHTTCCEEEEECCCSS-CCCCCCCTTTTHHHHHHHHHH-------H--CCEEEECSSCCSHHHHHHHHH-----TT
T ss_pred             HHHHHHcCCCEEEEecCccc-cCCCCCCccchHHHHHHHHHH-------C--CCCEEEECCCCCHHHHHHHHH-----cC
Confidence            45567889999 65555211 1100 000 0 2223333332       2  355668999999999999999     67


Q ss_pred             -CC
Q psy969           80 -PD   81 (106)
Q Consensus        80 -a~   81 (106)
                       +|
T Consensus       300 ~aD  302 (338)
T 1z41_A          300 RAD  302 (338)
T ss_dssp             SCS
T ss_pred             Cce
Confidence             65

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=86.54  E-value=2.6  Score=35.07  Aligned_cols=79  Identities=15%  Similarity=0.138  Sum_probs=52.7

Q ss_pred             hhhHHHhhCCCc-cc--CCCC------CCC----CCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeecC------C
Q psy969            3 RPRKVAFKGSNF-RT--LHGR------GPD----STSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPAG------G   60 (106)
Q Consensus         3 ~~~iai~aGadF-KT--STG~------~~~----gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaaG------G   60 (106)
                      +++.+.++|.|. +-  +.||      .|.    .-.||.. ++ ..+++.+.+++.++..++  .++||.+.      |
T Consensus       146 aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs-~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g  224 (671)
T 1ps9_A          146 CAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGD-YRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDG  224 (671)
T ss_dssp             HHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSS-HHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTC
T ss_pred             HHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCc-HHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCC
Confidence            467788999999 54  4555      121    1112221 44 578888888888887854  57889983      4


Q ss_pred             CCCHHHHHHHHHHHHhhCCCCccC
Q psy969           61 ISTFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        61 Irt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                       -+.+++.++.+..++ +|.+|++
T Consensus       225 -~~~~~~~~~a~~l~~-~g~d~i~  246 (671)
T 1ps9_A          225 -GTFAETVELAQAIEA-AGATIIN  246 (671)
T ss_dssp             -CCHHHHHHHHHHHHH-HTCSEEE
T ss_pred             -CCHHHHHHHHHHHHh-cCCCEEE
Confidence             378888888776554 6899874

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=86.46  E-value=2.3  Score=32.85  Aligned_cols=62  Identities=21%  Similarity=0.232  Sum_probs=38.8

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.++|+|+ .-. |....|.+ +.  .....++.+..+.    .  ++-|=++|||+|.+++.+++.     +|++
T Consensus       138 ~~a~~~GaD~i~v~-g~~~GG~~-G~--~~~~~ll~~i~~~----~--~iPviaaGGI~~~~dv~~al~-----~GA~  200 (326)
T 3bo9_A          138 RMVERAGADAVIAE-GMESGGHI-GE--VTTFVLVNKVSRS----V--NIPVIAAGGIADGRGMAAAFA-----LGAE  200 (326)
T ss_dssp             HHHHHTTCSCEEEE-CTTSSEEC-CS--SCHHHHHHHHHHH----C--SSCEEEESSCCSHHHHHHHHH-----HTCS
T ss_pred             HHHHHcCCCEEEEE-CCCCCccC-CC--ccHHHHHHHHHHH----c--CCCEEEECCCCCHHHHHHHHH-----hCCC
Confidence            4677889999 432 22222211 10  3355555544321    2  466789999999999999999     5886

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=86.33  E-value=0.98  Score=35.59  Aligned_cols=80  Identities=15%  Similarity=0.156  Sum_probs=52.3

Q ss_pred             hhhHHHhhCCCc-c--cCCCCC------C----CCCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeecC------C
Q psy969            3 RPRKVAFKGSNF-R--TLHGRG------P----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPAG------G   60 (106)
Q Consensus         3 ~~~iai~aGadF-K--TSTG~~------~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaaG------G   60 (106)
                      +++.|.++|.|. .  -..||-      |    ..-.||.. ++ ..+++++.+++.++.+++  .|+||.+.      |
T Consensus       163 aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGs-lenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G  241 (363)
T 3l5l_A          163 AARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGS-FDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRD  241 (363)
T ss_dssp             HHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSS-HHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCH
T ss_pred             HHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcC-HHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCC
Confidence            567889999998 3  344432      1    11112221 44 478888888888888864  49999985      2


Q ss_pred             CCCHHHHHHHHHHHHhhCCCCccC
Q psy969           61 ISTFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        61 Irt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                      --+.+++.++++..++ +|.+|++
T Consensus       242 ~~~~~~~~~la~~L~~-~Gvd~i~  264 (363)
T 3l5l_A          242 EQTLEESIELARRFKA-GGLDLLS  264 (363)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCCEEE
T ss_pred             CCCHHHHHHHHHHHHH-cCCCEEE
Confidence            1456777777766544 6898864

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=86.32  E-value=1.3  Score=34.97  Aligned_cols=20  Identities=15%  Similarity=0.042  Sum_probs=17.8

Q ss_pred             eeEeecCCCCCHHHHHHHHH
Q psy969           53 IGLKPAGGISTFEDSVRWIY   72 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~   72 (106)
                      +-|=+.|||+|.++|.++++
T Consensus       296 iPVi~~GgI~s~e~a~~~l~  315 (363)
T 3l5l_A          296 LPVTSAWGFGTPQLAEAALQ  315 (363)
T ss_dssp             CCEEECSSTTSHHHHHHHHH
T ss_pred             CcEEEeCCCCCHHHHHHHHH
Confidence            45668899999999999999

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=86.28  E-value=1.5  Score=34.25  Aligned_cols=20  Identities=20%  Similarity=0.170  Sum_probs=18.0

Q ss_pred             eeEeecCCCCCHHHHHHHHH
Q psy969           53 IGLKPAGGISTFEDSVRWIY   72 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~   72 (106)
                      +-|=+.|||+|.++|.++++
T Consensus       289 iPVi~~Ggi~t~e~a~~~l~  308 (349)
T 3hgj_A          289 LRTGAVGLITTPEQAETLLQ  308 (349)
T ss_dssp             CEEEECSSCCCHHHHHHHHH
T ss_pred             ceEEEECCCCCHHHHHHHHH
Confidence            55678899999999999999

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=86.11  E-value=2.1  Score=34.12  Aligned_cols=80  Identities=9%  Similarity=0.013  Sum_probs=50.9

Q ss_pred             hhhHHHhhCCCc-c--cCCCCC------CC----CCCCCCCCch-HHHHHHHHHHHHhhhcCC-ceeEeecC-----CCC
Q psy969            3 RPRKVAFKGSNF-R--TLHGRG------PD----STSYGNVCNT-CGIIMCSAIKHFHKLSGK-KIGLKPAG-----GIS   62 (106)
Q Consensus         3 ~~~iai~aGadF-K--TSTG~~------~~----gat~~~~~~~-~v~lm~~~i~~~~~~~~~-~vgiKaaG-----GIr   62 (106)
                      +++.|.++|.|. .  -+.||-      |.    .-.||. +++ ..+++++.+++.++.++. .|+||.+.     |+.
T Consensus       166 AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGG-slenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~  244 (361)
T 3gka_A          166 GAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGG-SIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMG  244 (361)
T ss_dssp             HHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSS-SHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCC
T ss_pred             HHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCC-ChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCC
Confidence            567889999998 4  344431      21    111222 144 477777777777777765 89999997     332


Q ss_pred             ---CHHHHHHHHHHHHhhCCCCccC
Q psy969           63 ---TFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        63 ---t~~~a~~~i~l~~~~lGa~w~~   84 (106)
                         +.+++.++.+..++ +|.+|++
T Consensus       245 ~~~~~~~~~~la~~l~~-~Gvd~i~  268 (361)
T 3gka_A          245 DSDPAATFGHVARELGR-RRIAFLF  268 (361)
T ss_dssp             CSCHHHHHHHHHHHHHH-TTCSEEE
T ss_pred             CCCcHHHHHHHHHHHHH-cCCCEEE
Confidence               35667777665544 6998864

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=86.00  E-value=1.2  Score=31.21  Aligned_cols=59  Identities=15%  Similarity=0.124  Sum_probs=36.4

Q ss_pred             HHHhhCCCc-ccCCCCC---CCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            6 KVAFKGSNF-RTLHGRG---PDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         6 iai~aGadF-KTSTG~~---~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.+.|+|| ..++-|.   ..+..     +.....+.+..+    ..  ++-|=++|||+ .+++.++++     +|++
T Consensus       123 ~~~~~g~d~i~~~~~~~~~~~~~~~-----~~~~~~l~~l~~----~~--~~pvia~GGI~-~~nv~~~~~-----~Ga~  185 (215)
T 1xi3_A          123 EAEKKGADYLGAGSVFPTKTKEDAR-----VIGLEGLRKIVE----SV--KIPVVAIGGIN-KDNAREVLK-----TGVD  185 (215)
T ss_dssp             HHHHHTCSEEEEECSSCC----CCC-----CCHHHHHHHHHH----HC--SSCEEEESSCC-TTTHHHHHT-----TTCS
T ss_pred             HHHhcCCCEEEEcCCccCCCCCCCC-----CcCHHHHHHHHH----hC--CCCEEEECCcC-HHHHHHHHH-----cCCC
Confidence            456789999 8654332   11222     334444443221    12  45677899999 999999888     6886

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=85.74  E-value=2.9  Score=33.31  Aligned_cols=80  Identities=11%  Similarity=0.069  Sum_probs=51.6

Q ss_pred             hhhHHHhhCCCc-c--cCCCCC------C----CCCCCCCCCch-HHHHHHHHHHHHhhhcCC-ceeEeecCC-----CC
Q psy969            3 RPRKVAFKGSNF-R--TLHGRG------P----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK-KIGLKPAGG-----IS   62 (106)
Q Consensus         3 ~~~iai~aGadF-K--TSTG~~------~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~-~vgiKaaGG-----Ir   62 (106)
                      +++.|.++|.|. .  -+.||-      |    ..-.||.. ++ ..+++++.+++.++.++. .|+||.++.     +.
T Consensus       158 AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGs-lenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~  236 (362)
T 4ab4_A          158 GAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGS-LENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMG  236 (362)
T ss_dssp             HHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSS-HHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCC
T ss_pred             HHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCc-hhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccC
Confidence            567889999998 4  344431      2    11112221 44 588888888888887765 899999974     21


Q ss_pred             ---CHHHHHHHHHHHHhhCCCCccC
Q psy969           63 ---TFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        63 ---t~~~a~~~i~l~~~~lGa~w~~   84 (106)
                         +.+++.++....++ +|.+|++
T Consensus       237 ~~~~~~~~~~la~~l~~-~Gvd~i~  260 (362)
T 4ab4_A          237 DADRAETFTYVARELGK-RGIAFIC  260 (362)
T ss_dssp             CTTHHHHHHHHHHHHHH-TTCSEEE
T ss_pred             CCCcHHHHHHHHHHHHH-hCCCEEE
Confidence               25667777665544 6999864

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=85.72  E-value=2.7  Score=32.77  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=22.1

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++-|=++|||+|.+++.++++     +|++
T Consensus       208 ~iPViaaGGI~~~~~~~~~l~-----~GAd  232 (369)
T 3bw2_A          208 DIPVVAAGGIMRGGQIAAVLA-----AGAD  232 (369)
T ss_dssp             SSCEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             CceEEEECCCCCHHHHHHHHH-----cCCC
Confidence            466789999999999999999     7986

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=85.71  E-value=2.3  Score=32.49  Aligned_cols=64  Identities=17%  Similarity=0.147  Sum_probs=39.1

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.++|+|+ .- +|+.+.|.+ +..-+....++.+..+    .  -++-|=++|||++.+++.+++.     +|++
T Consensus       132 ~~~~~~GaD~i~v-~g~~~GG~~-G~~~~~~~~~l~~v~~----~--~~iPviaaGGI~~~~~v~~al~-----~GAd  196 (328)
T 2gjl_A          132 LKAERLGVDAVSI-DGFECAGHP-GEDDIPGLVLLPAAAN----R--LRVPIIASGGFADGRGLVAALA-----LGAD  196 (328)
T ss_dssp             HHHHHTTCSEEEE-ECTTCSBCC-CSSCCCHHHHHHHHHT----T--CCSCEEEESSCCSHHHHHHHHH-----HTCS
T ss_pred             HHHHHcCCCEEEE-ECCCCCcCC-CCccccHHHHHHHHHH----h--cCCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence            4577899999 53 343322221 0000234555544321    1  2567889999999999999998     5886

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=85.63  E-value=4.2  Score=31.25  Aligned_cols=63  Identities=19%  Similarity=0.136  Sum_probs=34.4

Q ss_pred             hHHHhhCCCc-c--cCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-R--TLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-K--TSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +...+.+.+| -  +.+|..  |....  -++++.-+.+.++++   ++.++  =+-+||+|.+++.+.+.     .|+|
T Consensus       167 ~~i~~~~~gfiY~vs~~GvT--G~~~~--~~~~~~~~v~~vr~~---~~~Pv--~vGfGIst~e~~~~~~~-----~gAD  232 (271)
T 3nav_A          167 RAVAQLGKGYTYLLSRAGVT--GAETK--ANMPVHALLERLQQF---DAPPA--LLGFGISEPAQVKQAIE-----AGAA  232 (271)
T ss_dssp             HHHHHHCCSCEEECCCC------------CCHHHHHHHHHHHHT---TCCCE--EECSSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHCCCeEEEEeccCCC--CcccC--CchhHHHHHHHHHHh---cCCCE--EEECCCCCHHHHHHHHH-----cCCC
Confidence            3445567777 4  454532  22200  134555555555543   33334  34789999999997777     5876

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=85.42  E-value=0.84  Score=32.85  Aligned_cols=59  Identities=10%  Similarity=0.053  Sum_probs=35.3

Q ss_pred             hhHHHhhCCCc-ccC--CCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969            4 PRKVAFKGSNF-RTL--HGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP   80 (106)
Q Consensus         4 ~~iai~aGadF-KTS--TG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa   80 (106)
                      ++...++|+|+ --.  +|....+.+     .+.++.+++.       ++  +-|=+-|||++.+++..+++     +|+
T Consensus        37 a~~~~~~Gad~i~v~~~d~~~~~~~~-----~~~i~~i~~~-------~~--ipv~v~ggi~~~~~~~~~l~-----~Ga   97 (244)
T 2y88_A           37 ALGWQRDGAEWIHLVDLDAAFGRGSN-----HELLAEVVGK-------LD--VQVELSGGIRDDESLAAALA-----TGC   97 (244)
T ss_dssp             HHHHHHTTCSEEEEEEHHHHTTSCCC-----HHHHHHHHHH-------CS--SEEEEESSCCSHHHHHHHHH-----TTC
T ss_pred             HHHHHHcCCCEEEEEcCcccccCCCh-----HHHHHHHHHh-------cC--CcEEEECCCCCHHHHHHHHH-----cCC
Confidence            45667889998 432  342222223     2223333322       23  44555699999999999999     798


Q ss_pred             C
Q psy969           81 D   81 (106)
Q Consensus        81 ~   81 (106)
                      +
T Consensus        98 d   98 (244)
T 2y88_A           98 A   98 (244)
T ss_dssp             S
T ss_pred             C
Confidence            6

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1

Probab=85.15  E-value=3.7  Score=31.82  Aligned_cols=73  Identities=14%  Similarity=0.045  Sum_probs=44.9

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCC--ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGK--KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~--~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.+.|.+. |---|..+.+ +     .++.+...+.+++.++..++  .+.|++-||- |.++|+++++..++ +|.+
T Consensus       158 ~~~~~~Gf~~iKik~g~~~~~-~-----~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~-~~~~a~~~~~~l~~-~~i~  229 (382)
T 1rvk_A          158 ETLVKRGYKGIKLHTWMPPVS-W-----APDVKMDLKACAAVREAVGPDIRLMIDAFHWY-SRTDALALGRGLEK-LGFD  229 (382)
T ss_dssp             HHHHHHTCSEEEEECCCTTST-T-----CCCHHHHHHHHHHHHHHHCTTSEEEEECCTTC-CHHHHHHHHHHHHT-TTCS
T ss_pred             HHHHHCCCCEEEEcCCcCccc-c-----ccchHHHHHHHHHHHHHhCCCCeEEEECCCCC-CHHHHHHHHHHHHh-cCCC
Confidence            4456778887 7544422111 2     33344444444444444544  5888998876 68999999887665 6888


Q ss_pred             cc-CC
Q psy969           82 WL-NK   85 (106)
Q Consensus        82 w~-~~   85 (106)
                      |+ +|
T Consensus       230 ~iE~P  234 (382)
T 1rvk_A          230 WIEEP  234 (382)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            87 44

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=85.08  E-value=2.5  Score=33.33  Aligned_cols=80  Identities=13%  Similarity=0.027  Sum_probs=49.6

Q ss_pred             hhhHHHhhCCCc-cc--CCCCC------C----CCCCCCCCCch-HHHHHHHHHHHHhhhcCC-ceeEeecCC-------
Q psy969            3 RPRKVAFKGSNF-RT--LHGRG------P----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK-KIGLKPAGG-------   60 (106)
Q Consensus         3 ~~~iai~aGadF-KT--STG~~------~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~-~vgiKaaGG-------   60 (106)
                      +++.|.++|+|. .-  ..||-      |    ..-.||.. ++ ..+++++.+++.++.++. .|+||.+.-       
T Consensus       166 aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGs-lenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~  244 (365)
T 2gou_A          166 AALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGS-LENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTV  244 (365)
T ss_dssp             HHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSS-HHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCC
T ss_pred             HHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcc-hhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCC
Confidence            456788999998 53  44432      1    11112211 33 466777777777676764 899999962       


Q ss_pred             -CCCHHHHHHHHHHHHhhCCCCccC
Q psy969           61 -ISTFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        61 -Irt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                       =.+.+++.++.+..++ +|++|++
T Consensus       245 ~~~~~~~~~~~a~~l~~-~G~d~i~  268 (365)
T 2gou_A          245 DADPILTYTAAAALLNK-HRIVYLH  268 (365)
T ss_dssp             CSSHHHHHHHHHHHHHH-TTCSEEE
T ss_pred             CCCCHHHHHHHHHHHHH-cCCCEEE
Confidence             1367787777776554 6998863

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=84.96  E-value=0.64  Score=35.32  Aligned_cols=56  Identities=14%  Similarity=0.125  Sum_probs=36.0

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ..|.++|+|+ |.   | |.. .     ..-...++ .+   .... +.+-+=+.|||. .+.+.+|++     +|+.
T Consensus       141 ~~A~~~Gad~vK~---F-Pa~-~-----~gG~~~lk-al---~~p~-p~ip~~ptGGI~-~~n~~~~l~-----aGa~  197 (232)
T 4e38_A          141 EAALEMGLTTLKF---F-PAE-A-----SGGISMVK-SL---VGPY-GDIRLMPTGGIT-PSNIDNYLA-----IPQV  197 (232)
T ss_dssp             HHHHHTTCCEEEE---C-STT-T-----TTHHHHHH-HH---HTTC-TTCEEEEBSSCC-TTTHHHHHT-----STTB
T ss_pred             HHHHHcCCCEEEE---C-cCc-c-----ccCHHHHH-HH---HHHh-cCCCeeeEcCCC-HHHHHHHHH-----CCCe
Confidence            3578899999 97   3 322 1     11223332 22   2212 468888999995 899999999     7874

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=84.86  E-value=0.49  Score=36.96  Aligned_cols=63  Identities=21%  Similarity=0.173  Sum_probs=44.5

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.|+++|||+ ---+      -+     ++.++...+.++..    .+++.|=+|||| |++.+.+|.+     .|+|  
T Consensus       207 ~eA~~aGaD~I~LDn------~~-----~e~l~~av~~l~~~----~~~v~ieASGGI-t~eni~~~a~-----tGVD--  263 (285)
T 1o4u_A          207 LRAVEAGADIVMLDN------LS-----PEEVKDISRRIKDI----NPNVIVEVSGGI-TEENVSLYDF-----ETVD--  263 (285)
T ss_dssp             HHHHHTTCSEEEEES------CC-----HHHHHHHHHHHHHH----CTTSEEEEEECC-CTTTGGGGCC-----TTCC--
T ss_pred             HHHHHcCCCEEEECC------CC-----HHHHHHHHHHhhcc----CCCceEEEECCC-CHHHHHHHHH-----cCCC--
Confidence            4578889999 4333      34     67766665555421    247899999999 6788889988     7886  


Q ss_pred             CCCceeEeccch
Q psy969           84 NKDLFRIGASSL   95 (106)
Q Consensus        84 ~~~~~RiGtSs~   95 (106)
                           .|+.+++
T Consensus       264 -----~IsvGsl  270 (285)
T 1o4u_A          264 -----VISSSRL  270 (285)
T ss_dssp             -----EEEEGGG
T ss_pred             -----EEEEeHH
Confidence                 7766654

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=84.78  E-value=0.8  Score=33.43  Aligned_cols=55  Identities=13%  Similarity=0.059  Sum_probs=35.5

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCC-CCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF-RTLHGRGPDST-SYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~ga-t~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ..|.+.|+|| |-   |..... .     ++-++.++..       . +.+-|=+.|||. .+.+.+|++     +|++
T Consensus       118 ~~A~~~Gad~v~~---fpa~~~gG-----~~~lk~l~~~-------~-~~ipvvaiGGI~-~~n~~~~l~-----aGa~  174 (207)
T 2yw3_A          118 ERALALGLSALKF---FPAEPFQG-----VRVLRAYAEV-------F-PEVRFLPTGGIK-EEHLPHYAA-----LPNL  174 (207)
T ss_dssp             HHHHHTTCCEEEE---TTTTTTTH-----HHHHHHHHHH-------C-TTCEEEEBSSCC-GGGHHHHHT-----CSSB
T ss_pred             HHHHHCCCCEEEE---ecCccccC-----HHHHHHHHhh-------C-CCCcEEEeCCCC-HHHHHHHHh-----CCCc
Confidence            4567889999 86   421111 1     2333333322       2 367888999997 699999999     7885

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=84.57  E-value=2.4  Score=32.62  Aligned_cols=63  Identities=19%  Similarity=0.221  Sum_probs=38.7

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.+.++|+|| .-. |....+-+ +.  .....++.+..+    ..  ++-|=++|||+|.+++.+++.     +|++
T Consensus       123 a~~~~~~GaD~i~v~-g~~~GG~~-g~--~~~~~ll~~i~~----~~--~iPViaaGGI~~~~~~~~al~-----~GAd  186 (332)
T 2z6i_A          123 AKRMEKIGADAVIAE-GMEAGGHI-GK--LTTMTLVRQVAT----AI--SIPVIAAGGIADGEGAAAGFM-----LGAE  186 (332)
T ss_dssp             HHHHHHTTCSCEEEE-CTTSSEEC-CS--SCHHHHHHHHHH----HC--SSCEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHcCCCEEEEE-CCCCCCCC-CC--ccHHHHHHHHHH----hc--CCCEEEECCCCCHHHHHHHHH-----cCCC
Confidence            35677899999 542 33222111 00  234444443322    12  466789999999999999999     7986

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=84.50  E-value=2  Score=30.42  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=19.7

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +-|=++|||+ .+++.++++     +|++
T Consensus       173 ~pvia~GGI~-~~nv~~~~~-----~Ga~  195 (227)
T 2tps_A          173 IPIVGIGGIT-IDNAAPVIQ-----AGAD  195 (227)
T ss_dssp             CCEEEESSCC-TTTSHHHHH-----TTCS
T ss_pred             CCEEEEcCCC-HHHHHHHHH-----cCCC
Confidence            6678899999 999999888     6885

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=84.49  E-value=1.7  Score=34.36  Aligned_cols=60  Identities=18%  Similarity=0.147  Sum_probs=41.6

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.|+++|+|. .=-+      -+     +++++...+.+       .+++.|=+|||| |.+...+|.+     .|+|  
T Consensus       223 ~eAl~aGaD~I~LDn------~~-----~~~l~~av~~i-------~~~v~ieaSGGI-~~~~i~~~a~-----tGVD--  276 (298)
T 3gnn_A          223 RTALAHGARSVLLDN------FT-----LDMMRDAVRVT-------EGRAVLEVSGGV-NFDTVRAIAE-----TGVD--  276 (298)
T ss_dssp             HHHHHTTCEEEEEES------CC-----HHHHHHHHHHH-------TTSEEEEEESSC-STTTHHHHHH-----TTCS--
T ss_pred             HHHHHcCCCEEEECC------CC-----HHHHHHHHHHh-------CCCCeEEEEcCC-CHHHHHHHHH-----cCCC--
Confidence            4577788888 5433      23     55544443332       578999999999 7888899998     7997  


Q ss_pred             CCCceeEeccch
Q psy969           84 NKDLFRIGASSL   95 (106)
Q Consensus        84 ~~~~~RiGtSs~   95 (106)
                           .|+.+++
T Consensus       277 -----~isvG~l  283 (298)
T 3gnn_A          277 -----RISIGAL  283 (298)
T ss_dssp             -----EEECGGG
T ss_pred             -----EEEECCe
Confidence                 6666554

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=84.34  E-value=1.4  Score=32.08  Aligned_cols=60  Identities=20%  Similarity=0.222  Sum_probs=36.2

Q ss_pred             hHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.+.|+++  -|+...  .+...    ..+..++.+. +   +.  -++-|=++|||++.+++.++++     +|++
T Consensus       163 ~~~~~~G~~~i~~t~~~~--~g~~~----g~~~~~i~~l-~---~~--~~ipvia~GGI~~~ed~~~~~~-----~Gad  224 (266)
T 2w6r_A          163 VEVEKRGAGEILLTSIDR--DGTKS----GYDTEMIRFV-R---PL--TTLPIIASGGAGKMEHFLEAFL-----AGAD  224 (266)
T ss_dssp             HHHHHTTCSEEEEEETTT--TTTCS----CCCHHHHHHH-G---GG--CCSCEEEESCCCSHHHHHHHHH-----HTCS
T ss_pred             HHHHHcCCCEEEEEeecC--CCCcC----CCCHHHHHHH-H---HH--cCCCEEEeCCCCCHHHHHHHHH-----cCCH
Confidence            4567789998  554332  22210    1123333322 1   11  2466778999999999999997     5875

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=84.24  E-value=1.3  Score=32.96  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             CceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ..+.|=.-|||||.+++..+++     +|++
T Consensus        74 ~~~pl~vGGGIrs~e~~~~~l~-----~Gad   99 (243)
T 4gj1_A           74 VSVNLQVGGGIRSKEEVKALLD-----CGVK   99 (243)
T ss_dssp             CCSEEEEESSCCCHHHHHHHHH-----TTCS
T ss_pred             cCCCeEeccccccHHHHHHHHH-----cCCC
Confidence            3467778899999999999999     7996

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=84.19  E-value=1.9  Score=40.95  Aligned_cols=71  Identities=17%  Similarity=0.137  Sum_probs=42.1

Q ss_pred             hHHHhhCCCcccCCCCCC-CCCC-------CCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHh
Q psy969            5 RKVAFKGSNFRTLHGRGP-DSTS-------YGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLI   76 (106)
Q Consensus         5 ~iai~aGadFKTSTG~~~-~gat-------~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~   76 (106)
                      +.+.++|||+-+-.|+.. .+++       .+-|-...+..+.+++.+.  ....+|-|=++|||+|..|+.+.+.    
T Consensus      1046 ~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~~~--glr~~IpVIAdGGIrtG~DVakALa---- 1119 (1520)
T 1ofd_A         1046 AGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMEN--QLRDRVLLRADGGLKTGWDVVMAAL---- 1119 (1520)
T ss_dssp             HHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHT--TCGGGCEEEEESSCCSHHHHHHHHH----
T ss_pred             HHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHHHHHHHhc--CCCCCceEEEECCCCCHHHHHHHHH----
Confidence            457789999933445431 2222       0111122233333322211  0134799999999999999999999    


Q ss_pred             hCCCCc
Q psy969           77 MLGPDW   82 (106)
Q Consensus        77 ~lGa~w   82 (106)
                       |||++
T Consensus      1120 -LGAda 1124 (1520)
T 1ofd_A         1120 -MGAEE 1124 (1520)
T ss_dssp             -TTCSE
T ss_pred             -cCCCe
Confidence             79973

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=83.59  E-value=1.2  Score=32.01  Aligned_cols=21  Identities=19%  Similarity=0.309  Sum_probs=19.1

Q ss_pred             ceeEeecCCCCCHHHHHHHHH
Q psy969           52 KIGLKPAGGISTFEDSVRWIY   72 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~   72 (106)
                      ++-|=++|||++.+++.++++
T Consensus       193 ~ipvia~GGI~~~~d~~~~~~  213 (244)
T 2y88_A          193 DAPVIASGGVSSLDDLRAIAT  213 (244)
T ss_dssp             SSCEEEESCCCSHHHHHHHHT
T ss_pred             CCCEEEECCCCCHHHHHHHHh
Confidence            567889999999999999998

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=83.51  E-value=2.9  Score=33.34  Aligned_cols=60  Identities=15%  Similarity=0.119  Sum_probs=43.4

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      +.|+++|+|+ .=-+      -+     +++++...+.+       ++++.|=+||||. .+...+|.+     .|+|  
T Consensus       245 ~eAl~aGaD~I~LDn------~~-----~~~l~~av~~l-------~~~v~ieaSGGIt-~~~I~~~a~-----tGVD--  298 (320)
T 3paj_A          245 EEAISAGADIIMLDN------FS-----LEMMREAVKIN-------AGRAALENSGNIT-LDNLKECAE-----TGVD--  298 (320)
T ss_dssp             HHHHHTTCSEEEEES------CC-----HHHHHHHHHHH-------TTSSEEEEESSCC-HHHHHHHHT-----TTCS--
T ss_pred             HHHHHcCCCEEEECC------CC-----HHHHHHHHHHh-------CCCCeEEEECCCC-HHHHHHHHH-----cCCC--
Confidence            4577889998 5433      24     66655554433       4789999999995 888888988     7996  


Q ss_pred             CCCceeEeccch
Q psy969           84 NKDLFRIGASSL   95 (106)
Q Consensus        84 ~~~~~RiGtSs~   95 (106)
                           .|+++++
T Consensus       299 -----~isvGal  305 (320)
T 3paj_A          299 -----YISVGAL  305 (320)
T ss_dssp             -----EEECTHH
T ss_pred             -----EEEECce
Confidence                 7777664

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=83.34  E-value=2.6  Score=30.34  Aligned_cols=60  Identities=18%  Similarity=0.205  Sum_probs=36.7

Q ss_pred             hHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            5 RKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         5 ~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.+.|++.  -|++...  +...    -.+...+.+. +   +..  .+-|=++|||++.+++.++++     .|++
T Consensus       158 ~~~~~~G~~~i~~~~~~~~--g~~~----g~~~~~~~~l-~---~~~--~ipvia~GGI~~~~d~~~~~~-----~Gad  219 (253)
T 1thf_D          158 VEVEKRGAGEILLTSIDRD--GTKS----GYDTEMIRFV-R---PLT--TLPIIASGGAGKMEHFLEAFL-----AGAD  219 (253)
T ss_dssp             HHHHHTTCSEEEEEETTTT--TSCS----CCCHHHHHHH-G---GGC--CSCEEEESCCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHCCCCEEEEEeccCC--CCCC----CCCHHHHHHH-H---Hhc--CCCEEEECCCCCHHHHHHHHH-----cCCh
Confidence            5567889995  5655422  2110    1123333322 2   112  466789999999999999998     6885

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=82.79  E-value=4.3  Score=33.96  Aligned_cols=76  Identities=17%  Similarity=0.124  Sum_probs=52.2

Q ss_pred             hhhHHHhhCCCc---ccCCCC-----------CCCCCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeecC------
Q psy969            3 RPRKVAFKGSNF---RTLHGR-----------GPDSTSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPAG------   59 (106)
Q Consensus         3 ~~~iai~aGadF---KTSTG~-----------~~~gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaaG------   59 (106)
                      +++.|.++|.|.   --..||           ....-.||.. ++ ..+++++.+++.++.++.  .|+||.|.      
T Consensus       161 aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs-~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~  239 (690)
T 3k30_A          161 AVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGS-LENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDG  239 (690)
T ss_dssp             HHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSS-HHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTT
T ss_pred             HHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCC-HHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCC
Confidence            567889999999   567888           2222223222 44 577888888887777765  59999964      


Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCc
Q psy969           60 GISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus        60 GIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      |+ +.+++.++..+.++  |.++
T Consensus       240 g~-~~~~~~~~~~~l~~--~~d~  259 (690)
T 3k30_A          240 GI-TREDIEGVLRELGE--LPDL  259 (690)
T ss_dssp             SC-CHHHHHHHHHHHTT--SSSE
T ss_pred             CC-CHHHHHHHHHHHHh--hcCE
Confidence            43 46888888888776  4553

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=82.78  E-value=4.6  Score=31.80  Aligned_cols=79  Identities=16%  Similarity=0.234  Sum_probs=52.1

Q ss_pred             hhhHHHhhCCCc-c--cCCCCC------C----CCCCCCCCCch-HHHHHHHHHHHHhhhcCC--ceeEeecCC-----C
Q psy969            3 RPRKVAFKGSNF-R--TLHGRG------P----DSTSYGNVCNT-CGIIMCSAIKHFHKLSGK--KIGLKPAGG-----I   61 (106)
Q Consensus         3 ~~~iai~aGadF-K--TSTG~~------~----~gat~~~~~~~-~v~lm~~~i~~~~~~~~~--~vgiKaaGG-----I   61 (106)
                      +++.|.++|.|. .  -..||-      |    ..-.||.. ++ ..+++++.+++.++.+++  .|+||.+..     =
T Consensus       148 AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGs-lenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g  226 (343)
T 3kru_A          148 AAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNS-IENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGG  226 (343)
T ss_dssp             HHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSS-HHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTS
T ss_pred             HHhhccccCCceEEEecccchhHHHhhcccccccchhhccc-hHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccC
Confidence            567888999997 3  233321      1    11112211 44 577888888888888864  699999951     2


Q ss_pred             CCHHHHHHHHHHHHhhCCCCccC
Q psy969           62 STFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        62 rt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                      -+.+++.++.+..++.  .+|++
T Consensus       227 ~~~~~~~~~a~~l~~~--vd~i~  247 (343)
T 3kru_A          227 INIDMMVEYINMIKDK--VDLID  247 (343)
T ss_dssp             CCHHHHHHHHHHHTTT--CSEEE
T ss_pred             ccHHHHHHHHHHhhcc--ccEEe
Confidence            4689999998887776  77764

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=81.45  E-value=2.7  Score=32.96  Aligned_cols=59  Identities=19%  Similarity=0.112  Sum_probs=38.1

Q ss_pred             hhHHHhhCCCcccCCC----CCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969            4 PRKVAFKGSNFRTLHG----RGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         4 ~~iai~aGadFKTSTG----~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG   79 (106)
                      ++...++|+++--.-|    =+.+-.+     ++-++.+++.         .++-|=+.|||.|.+||...++     +|
T Consensus       149 akrl~~~G~~aVmPlg~pIGsG~Gi~~-----~~lI~~I~e~---------~~vPVI~eGGI~TPsDAa~Ame-----LG  209 (265)
T 1wv2_A          149 ARQLAEIGCIAVMPLAGLIGSGLGICN-----PYNLRIILEE---------AKVPVLVDAGVGTASDAAIAME-----LG  209 (265)
T ss_dssp             HHHHHHSCCSEEEECSSSTTCCCCCSC-----HHHHHHHHHH---------CSSCBEEESCCCSHHHHHHHHH-----HT
T ss_pred             HHHHHHhCCCEEEeCCccCCCCCCcCC-----HHHHHHHHhc---------CCCCEEEeCCCCCHHHHHHHHH-----cC
Confidence            4566788999822222    1111134     5555555543         3455666899999999999999     69


Q ss_pred             CC
Q psy969           80 PD   81 (106)
Q Consensus        80 a~   81 (106)
                      ++
T Consensus       210 Ad  211 (265)
T 1wv2_A          210 CE  211 (265)
T ss_dssp             CS
T ss_pred             CC
Confidence            96

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=81.30  E-value=3.6  Score=35.31  Aligned_cols=59  Identities=27%  Similarity=0.286  Sum_probs=41.4

Q ss_pred             hhhHHHhhCCCc---ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969            3 RPRKVAFKGSNF---RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         3 ~~~iai~aGadF---KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG   79 (106)
                      +.+..+++|+|+   -|++|..           +.+..+.+.|++.   . +.+-|= +|.|-|.+.|+++++     +|
T Consensus       285 R~~aLv~AGvD~iviD~ahGhs-----------~~v~~~i~~ik~~---~-p~~~vi-aGNVaT~e~a~~Li~-----aG  343 (556)
T 4af0_A          285 RLKLLAEAGLDVVVLDSSQGNS-----------VYQIEFIKWIKQT---Y-PKIDVI-AGNVVTREQAAQLIA-----AG  343 (556)
T ss_dssp             HHHHHHHTTCCEEEECCSCCCS-----------HHHHHHHHHHHHH---C-TTSEEE-EEEECSHHHHHHHHH-----HT
T ss_pred             HHHHHHhcCCcEEEEecccccc-----------HHHHHHHHHHHhh---C-CcceEE-eccccCHHHHHHHHH-----cC
Confidence            456778999998   7888763           2333344444432   2 567774 499999999999999     59


Q ss_pred             CCc
Q psy969           80 PDW   82 (106)
Q Consensus        80 a~w   82 (106)
                      +|-
T Consensus       344 AD~  346 (556)
T 4af0_A          344 ADG  346 (556)
T ss_dssp             CSE
T ss_pred             CCE
Confidence            863

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=81.04  E-value=0.86  Score=33.07  Aligned_cols=55  Identities=13%  Similarity=0.060  Sum_probs=35.4

Q ss_pred             hHHHhhCCCc--ccCCCCC--CCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969            5 RKVAFKGSNF--RTLHGRG--PDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL   73 (106)
Q Consensus         5 ~iai~aGadF--KTSTG~~--~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l   73 (106)
                      +.+.+.|+++  -|++...  ..+.+     .+.++.+++.       +  ++-|=++|||++.+++.++.++
T Consensus       151 ~~~~~~G~~~i~~t~~~~~g~~~g~~-----~~~i~~l~~~-------~--~iPvia~GGI~~~~d~~~~~~~  209 (241)
T 1qo2_A          151 KRLKEYGLEEIVHTEIEKDGTLQEHD-----FSLTKKIAIE-------A--EVKVLAAGGISSENSLKTAQKV  209 (241)
T ss_dssp             HHHHTTTCCEEEEEETTHHHHTCCCC-----HHHHHHHHHH-------H--TCEEEEESSCCSHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEEeecccccCCcCC-----HHHHHHHHHh-------c--CCcEEEECCCCCHHHHHHHHhc
Confidence            3466789997  6665321  12233     4444444433       2  4667789999999999999983

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=80.89  E-value=1.7  Score=33.70  Aligned_cols=66  Identities=6%  Similarity=0.042  Sum_probs=38.1

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCcee-EeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIG-LKPAGGISTFEDSVRWIYLVLIMLGP   80 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vg-iKaaGGIrt~~~a~~~i~l~~~~lGa   80 (106)
                      +.+.+.+.|||| |+..+..+.+ +     ++..+-+.+....   .  -.+. |=++||| +.++.++.+..+.+ .|+
T Consensus       182 aa~~a~~lGaD~iKv~~~~~~~g-~-----~~~~~~vv~~~~~---~--~~~P~Vv~aGG~-~~~~~~~~~~~a~~-aGa  248 (304)
T 1to3_A          182 AAKELGDSGADLYKVEMPLYGKG-A-----RSDLLTASQRLNG---H--INMPWVILSSGV-DEKLFPRAVRVAME-AGA  248 (304)
T ss_dssp             HHHHHTTSSCSEEEECCGGGGCS-C-----HHHHHHHHHHHHH---T--CCSCEEECCTTS-CTTTHHHHHHHHHH-TTC
T ss_pred             HHHHHHHcCCCEEEeCCCcCCCC-C-----HHHHHHHHHhccc---c--CCCCeEEEecCC-CHHHHHHHHHHHHH-cCC
Confidence            467778889999 9988522111 4     5554444333211   1  1344 6679999 66665555555544 476


Q ss_pred             C
Q psy969           81 D   81 (106)
Q Consensus        81 ~   81 (106)
                      .
T Consensus       249 ~  249 (304)
T 1to3_A          249 S  249 (304)
T ss_dssp             C
T ss_pred             e
Confidence            3

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=80.87  E-value=2.1  Score=30.60  Aligned_cols=63  Identities=11%  Similarity=-0.110  Sum_probs=40.3

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCH-HHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTF-EDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~-~~a~~~i~l~~~~lGa~   81 (106)
                      .+++.+.|++. +.+      +.+     ++.++.+++.       .+...-+ +.|||+.- .++.+.++     +|++
T Consensus       125 ~~~a~~~G~~G~~~~------~~~-----~~~i~~lr~~-------~~~~~~i-v~gGI~~~g~~~~~~~~-----aGad  180 (208)
T 2czd_A          125 IEVANEIEPFGVIAP------GTR-----PERIGYIRDR-------LKEGIKI-LAPGIGAQGGKAKDAVK-----AGAD  180 (208)
T ss_dssp             HHHHHHHCCSEEECC------CSS-----THHHHHHHHH-------SCTTCEE-EECCCCSSTTHHHHHHH-----HTCS
T ss_pred             HHHHHHhCCcEEEEC------CCC-----hHHHHHHHHh-------CCCCeEE-EECCCCCCCCCHHHHHH-----cCCC
Confidence            45677888888 654      234     7777776654       3444557 99999963 25777777     5987


Q ss_pred             ccCCCceeE
Q psy969           82 WLNKDLFRI   90 (106)
Q Consensus        82 w~~~~~~Ri   90 (106)
                      ++--+..-+
T Consensus       181 ~vvvGr~I~  189 (208)
T 2czd_A          181 YIIVGRAIY  189 (208)
T ss_dssp             EEEECHHHH
T ss_pred             EEEEChHHh
Confidence            544433333

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=80.69  E-value=2.1  Score=31.80  Aligned_cols=53  Identities=15%  Similarity=0.080  Sum_probs=34.5

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ..++|+++|||| -++ +     .+     ++.++.-++        .+..+-  +  |+.|.+++.+..+     +|++
T Consensus        81 ~~~~A~~aGAd~v~~p-~-----~d-----~~v~~~ar~--------~g~~~i--~--Gv~t~~e~~~A~~-----~Gad  132 (224)
T 1vhc_A           81 QVVLAKSSGADFVVTP-G-----LN-----PKIVKLCQD--------LNFPIT--P--GVNNPMAIEIALE-----MGIS  132 (224)
T ss_dssp             HHHHHHHHTCSEEECS-S-----CC-----HHHHHHHHH--------TTCCEE--C--EECSHHHHHHHHH-----TTCC
T ss_pred             HHHHHHHCCCCEEEEC-C-----CC-----HHHHHHHHH--------hCCCEE--e--ccCCHHHHHHHHH-----CCCC
Confidence            467899999999 755 2     23     333333221        133322  2  5999999999888     7998


Q ss_pred             cc
Q psy969           82 WL   83 (106)
Q Consensus        82 w~   83 (106)
                      ++
T Consensus       133 ~v  134 (224)
T 1vhc_A          133 AV  134 (224)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d2a4aa1	256	c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldol	2e-20
d1p1xa_	250	c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC	5e-19
d1vcva1	226	c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase	2e-13
d1mzha_	225	c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC	2e-11
d1o0ya_	251	c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC	3e-10
d1n7ka_	234	c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC	4e-10
d1ub3a_	211	c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC	5e-07

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 256

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 80.2 bits (197), Expect = 2e-20
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 5   RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHF---HKLSGKKIGLKPAGG 60
             V    ++F +T  G+   + +  +V       +  AIK +   +     KIGLK +GG
Sbjct: 158 LAVLNGNADFIKTSTGKVQINATPSSV-----EYIIKAIKEYIKNNPEKNNKIGLKVSGG 212

Query: 61  ISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSLLNNILQEL 103
           IS    +  +I L    L     + D FRIG+SSL+  + + +
Sbjct: 213 ISDLNTASHYILLARRFLSSLACHPDNFRIGSSSLVIKLRKVI 255

>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} Length = 250

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Escherichia coli [TaxId: 562]

 Score = 76.7 bits (188), Expect = 5e-19
 Identities = 26/81 (32%), Positives = 39/81 (48%)

Query: 24  STSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL 83
           ST    V  T                 K +G KPAGG+ T ED+ +++ +   + G DW 
Sbjct: 169 STGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWA 228

Query: 84  NKDLFRIGASSLLNNILQELE 104
           +   +R GASSLL ++L+ L 
Sbjct: 229 DARHYRFGASSLLASLLKALG 249

>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 226

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 61.6 bits (149), Expect = 2e-13
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 16  TLHGRGPDSTSYGNVCNT-CGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLV 74
           +  G   ++ +              +AI  + K  G ++G+K AGGI T E +       
Sbjct: 147 SSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAI---- 202

Query: 75  LIMLGPDWLNKDLFRIGASSLLN 97
            +       +    R+G S+   
Sbjct: 203 -VDAIGWGEDPARVRLGTSTPEA 224

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} Length = 225

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

 Score = 56.1 bits (135), Expect = 2e-11
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 13/71 (18%)

Query: 35  GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94
                  ++     +  +I +K +GGI   E ++       I  G D       RIG SS
Sbjct: 158 RGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISM-----IEAGAD-------RIGTSS 205

Query: 95  LLNNILQELEA 105
            + +I +E   
Sbjct: 206 GI-SIAEEFLK 215

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

 Score = 53.1 bits (127), Expect = 3e-10
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 35  GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG----PDWLNKDLFRI 90
           G      +     + G ++G+K +GGI TFED+V+ I      +G       +     R 
Sbjct: 191 GGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSSGVKIVQGGEERY 250

Query: 91  G 91
           G
Sbjct: 251 G 251

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 234

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 52.3 bits (125), Expect = 4e-10
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 13/72 (18%)

Query: 35  GIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94
           G    +  +         +G+K +GGI +  D+V       +  G D        IG SS
Sbjct: 175 GGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVL-----AVGAGAD-------IIGTSS 222

Query: 95  LLNNILQELEAL 106
            +  +L+  ++L
Sbjct: 223 AV-KVLESFKSL 233

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} Length = 211

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

 Score = 43.8 bits (103), Expect = 5e-07
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 12/54 (22%)

Query: 41  AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS 94
            +    +++  +  +K AGGI   E ++R      +  G         R+G SS
Sbjct: 164 DVALLVRVAQGRAQVKAAGGIRDRETALRM-----LKAGAS-------RLGTSS 205

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1p1xa_	250	Deoxyribose-phosphate aldolase DeoC {Escherichia c	100.0
d2a4aa1	256	Fructose-1,6-bisphosphate aldolase {Plasmodium yoe	100.0
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	99.93
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	99.93
d1vcva1	226	Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro	99.92
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	99.92
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	99.91
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	96.88
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	96.55
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	95.59
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	95.53
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	95.2
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	94.97
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	94.56
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	93.74
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	93.67
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	93.17
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	92.7
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	92.49
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	92.28
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	91.54
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	91.03
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	90.74
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	89.9
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	89.71
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	89.68
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	89.22
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	88.47
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	88.27
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	87.16
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	84.7
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	83.32
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	82.88
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	80.78
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	80.42

>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-33  Score=216.47  Aligned_cols=95  Identities=31%  Similarity=0.556  Sum_probs=90.7

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +|++|+++|||| ||||||.++++|     ++++++|+++++++.  .+.++|||+||||||++||++|+++..+.+|.+
T Consensus       154 a~~ia~~aGadFvKTSTG~~~~gat-----~~~v~~m~~~i~~~~--~~~~vgIKasGGIrt~~~a~~~i~~ga~~iG~~  226 (250)
T d1p1xa_         154 ASEISIKAGADFIKTSTGKVAVNAT-----PESARIMMEVIRDMG--VEKTVGFKPAGGVRTAEDAQKYLAIADELFGAD  226 (250)
T ss_dssp             HHHHHHHTTCSEEECCCSCSSCCCC-----HHHHHHHHHHHHHHT--CTTTCEEECBSSCCSHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHcCcCeEEecCCcCCCCCC-----HHHHHHHHHHhhhhc--cCcceeeEecCCCCCHHHHHHHHHHHHHHhCcc
Confidence            689999999999 999999999999     999999999998763  467999999999999999999999999999999


Q ss_pred             ccCCCceeEeccchHHHHHHHHh
Q psy969           82 WLNKDLFRIGASSLLNNILQELE  104 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~~~l~  104 (106)
                      |++|++||||+||++++|+++|+
T Consensus       227 ~~~~~~fRiGaSs~l~~l~~~l~  249 (250)
T d1p1xa_         227 WADARHYRFGASSLLASLLKALG  249 (250)
T ss_dssp             SCSTTTBCEEESTHHHHHHHHHT
T ss_pred             ccccCceeeeHHHHHHHHHHHhc
Confidence            99999999999999999999985

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=3.8e-33  Score=216.37  Aligned_cols=96  Identities=29%  Similarity=0.380  Sum_probs=84.1

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhh---hcCCceeEeecCCCCCHHHHHHHHHHHHhhC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHK---LSGKKIGLKPAGGISTFEDSVRWIYLVLIML   78 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~---~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~l   78 (106)
                      ++++++++|||| ||||||+++|+|     +++|++|+++++++.+   ..++++||||||||||++||++|++++.+.+
T Consensus       156 ~~~~~~~aGadFVKTSTG~~~~gat-----~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i~~g~~~l  230 (256)
T d2a4aa1         156 TTLAVLNGNADFIKTSTGKVQINAT-----PSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRFL  230 (256)
T ss_dssp             HHHHHHTTTCSEEECCCSCSSCCCC-----HHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcccHHHHhccCCCCCCCC-----HHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHHHHHHHhc
Confidence            356788999999 999999999999     9999999999988743   4589999999999999999999999999999


Q ss_pred             CCCccCCCceeEeccchHHHHHHHH
Q psy969           79 GPDWLNKDLFRIGASSLLNNILQEL  103 (106)
Q Consensus        79 Ga~w~~~~~~RiGtSs~~~~l~~~l  103 (106)
                      |.+|++|++|||||||++++|+++|
T Consensus       231 G~~~~~~~~fRIGtSsll~~l~~~~  255 (256)
T d2a4aa1         231 SSLACHPDNFRIGSSSLVIKLRKVI  255 (256)
T ss_dssp             C------CCEEEEESSHHHHHHHHH
T ss_pred             ccccccCCceeeeHHHHHHHHHHHh
Confidence            9999999999999999999999987

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.93  E-value=8.6e-27  Score=177.74  Aligned_cols=78  Identities=28%  Similarity=0.354  Sum_probs=72.4

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +|++|+++|||| ||||||++.|+|     +++|++|++.+       ++++|||+||||||++||++|++     +|++
T Consensus       137 a~~~a~~aGadfiKTSTG~~~~gat-----~e~v~~m~~~~-------~~~~~iKasGGIrt~~~a~~~i~-----~Ga~  199 (225)
T d1mzha_         137 AVEICIEAGADFIKTSTGFAPRGTT-----LEEVRLIKSSA-------KGRIKVKASGGIRDLETAISMIE-----AGAD  199 (225)
T ss_dssp             HHHHHHHHTCSEEECCCSCSSSCCC-----HHHHHHHHHHH-------TTSSEEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHHcccceEeecCCCCCCCCC-----HHHHHHHHHHh-------CCCceEECcCCCCCHHHHHHHHH-----hchh
Confidence            789999999999 999999999999     99999999875       68999999999999999999999     7995


Q ss_pred             ccCCCceeEeccchHHHHHHHHh
Q psy969           82 WLNKDLFRIGASSLLNNILQELE  104 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~~~l~  104 (106)
                             |||||+++.++.+.++
T Consensus       200 -------RiGtSs~~~i~~e~~~  215 (225)
T d1mzha_         200 -------RIGTSSGISIAEEFLK  215 (225)
T ss_dssp             -------EEEESCHHHHHHHHHH
T ss_pred             -------heecCcHHHHHHHHHh
Confidence                   9999999998877554

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.4e-26  Score=174.95  Aligned_cols=73  Identities=26%  Similarity=0.373  Sum_probs=69.2

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +|++|+++|||| ||||||++.|+|     +++|++|++.+       ++++|||+||||||++||++|++     +|++
T Consensus       137 a~~~a~~aGadfiKTSTG~~~~gat-----~e~v~~m~~~~-------~~~~~iKasGGIrt~~~a~~~l~-----aGa~  199 (211)
T d1ub3a_         137 LAEAAIRGGADFLKTSTGFGPRGAS-----LEDVALLVRVA-------QGRAQVKAAGGIRDRETALRMLK-----AGAS  199 (211)
T ss_dssp             HHHHHHHHTCSEEECCCSSSSCCCC-----HHHHHHHHHHH-------TTSSEEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHHhccceEEecCCCCCCCCC-----HHHHHHHHHHh-------CCCceEECcCCCCCHHHHHHHHH-----Hhhh
Confidence            689999999999 999999999999     99999999986       68999999999999999999999     7995


Q ss_pred             ccCCCceeEeccchHHHH
Q psy969           82 WLNKDLFRIGASSLLNNI   99 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l   99 (106)
                             |||||+++.+|
T Consensus       200 -------riGtSs~~~i~  210 (211)
T d1ub3a_         200 -------RLGTSSGVALV  210 (211)
T ss_dssp             -------EEEETTHHHHH
T ss_pred             -------HhccCcHHHHh
Confidence                   99999999876

>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.92  E-value=3.6e-26  Score=174.37  Aligned_cols=83  Identities=24%  Similarity=0.303  Sum_probs=72.4

Q ss_pred             hhhHHHhhCCCc-ccCCCCC----------CCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHH
Q psy969            3 RPRKVAFKGSNF-RTLHGRG----------PDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWI   71 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~----------~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i   71 (106)
                      +|++++++|||| ||||||+          |.++|     ++++++|++.+++    .++++|||+||||||++||.+|+
T Consensus       133 ~~~~~~~aGadFIKTSTGf~~~g~~~~~~~~~~at-----~~~~~~~~~~~~~----~g~~vgiKasGGIrt~~~A~~~i  203 (226)
T d1vcva1         133 LYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHST-----PERAAAIARYIKE----KGYRLGVKMAGGIRTREQAKAIV  203 (226)
T ss_dssp             HHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCC-----HHHHHHHHHHHHH----HTCCCEEEEESSCCSHHHHHHHH
T ss_pred             HHHHHHHcCcceeeecccccCCcccccccCcccCc-----HHHHHHHHHHHHH----hCCceeEECcCCCCCHHHHHHHH
Confidence            689999999999 9999997          45799     9999999988875    48899999999999999999999


Q ss_pred             HHHHhhCCCCccCCCceeEeccchHHHH
Q psy969           72 YLVLIMLGPDWLNKDLFRIGASSLLNNI   99 (106)
Q Consensus        72 ~l~~~~lGa~w~~~~~~RiGtSs~~~~l   99 (106)
                      ++.    +. +.+|+.|||||||++++|
T Consensus       204 ~a~----~~-~~~~ga~RiGtSs~~~il  226 (226)
T d1vcva1         204 DAI----GW-GEDPARVRLGTSTPEALL  226 (226)
T ss_dssp             HHH----CS-CSCTTTEEEEESCGGGGC
T ss_pred             Hhh----hc-CCCCCCEEEecCChhhhC
Confidence            863    22 257999999999998753

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.6e-25  Score=173.14  Aligned_cols=75  Identities=33%  Similarity=0.509  Sum_probs=70.3

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +|++|+++|||| ||||||++.|+|     +++|++|++.+       ++++|||+||||||++||++|++     +|++
T Consensus       170 a~~ia~~aGadfvKTSTGf~~~gat-----~e~V~~m~~~~-------~~~~giKasGGIrt~~~a~~~i~-----aGa~  232 (251)
T d1o0ya_         170 ACVISKLAGAHFVKTSTGFGTGGAT-----AEDVHLMKWIV-------GDEMGVKASGGIRTFEDAVKMIM-----YGAD  232 (251)
T ss_dssp             HHHHHHHTTCSEEECCCSSSSCCCC-----HHHHHHHHHHH-------CTTSEEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHHhCcceeeccCCCCCCCcC-----HHHHHHHHHHh-------CCCceEeccCCcCCHHHHHHHHH-----HhhH
Confidence            689999999999 999999999999     99999999875       78999999999999999999999     7995


Q ss_pred             ccCCCceeEeccchHHHHHH
Q psy969           82 WLNKDLFRIGASSLLNNILQ  101 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~~  101 (106)
                             |||||++++++.+
T Consensus       233 -------riGtSs~~~i~~~  245 (251)
T d1o0ya_         233 -------RIGTSSGVKIVQG  245 (251)
T ss_dssp             -------EEEESCHHHHHHH
T ss_pred             -------HhCCCcHHHHhhh
Confidence                   9999999997654

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.91  E-value=5.7e-25  Score=168.10  Aligned_cols=80  Identities=25%  Similarity=0.302  Sum_probs=70.3

Q ss_pred             hhhHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            3 RPRKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         3 ~~~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +|++|+++|||| ||||||.+.|+|     ++++..|++.++      +.++|||+||||||++||++|++     +|++
T Consensus       153 a~~~a~~aGadFVKTSTG~~~~gat-----~~~~~~l~~~~~------~~~vgIKasGGIrt~~~a~~~i~-----aGa~  216 (234)
T d1n7ka_         153 LVDSSRRAGADIVKTSTGVYTKGGD-----PVTVFRLASLAK------PLGMGVKASGGIRSGIDAVLAVG-----AGAD  216 (234)
T ss_dssp             HHHHHHHTTCSEEESCCSSSCCCCS-----HHHHHHHHHHHG------GGTCEEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHHhhhhheeecccccCCCCC-----HHHHHHHHHHhc------CCCCcEEeeCCcCCHHHHHHHHH-----ccCc
Confidence            689999999999 999999999999     998888877653      56799999999999999999999     7995


Q ss_pred             ccCCCceeEeccchHHHHHHHHhhC
Q psy969           82 WLNKDLFRIGASSLLNNILQELEAL  106 (106)
Q Consensus        82 w~~~~~~RiGtSs~~~~l~~~l~~~  106 (106)
                             |||||++++ |+++++.|
T Consensus       217 -------rIGtSs~~~-I~~e~~~~  233 (234)
T d1n7ka_         217 -------IIGTSSAVK-VLESFKSL  233 (234)
T ss_dssp             -------EEEETTHHH-HHHHHHCC
T ss_pred             -------eeecchHHH-HHHHHHhh
Confidence                   999999997 66666653

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.88  E-value=0.0022  Score=43.84  Aligned_cols=72  Identities=17%  Similarity=0.177  Sum_probs=46.5

Q ss_pred             hHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969            5 RKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus         5 ~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      ..+.+.|+|+  -+..|+.....+ .++=....+++.+..+      .-++-|-++|||+|.+|+.++++     +|++ 
T Consensus       133 ~~~~~~g~d~i~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~------~~~iPVia~GGI~t~~d~~~~~~-----~GAd-  199 (222)
T d1y0ea_         133 KNAARLGFDYIGTTLHGYTSYTQG-QLLYQNDFQFLKDVLQ------SVDAKVIAEGNVITPDMYKRVMD-----LGVH-  199 (222)
T ss_dssp             HHHHHTTCSEEECTTTTSSTTSTT-CCTTHHHHHHHHHHHH------HCCSEEEEESSCCSHHHHHHHHH-----TTCS-
T ss_pred             HHHHHcCCCeEEEeccCCcccccC-ccchhhHHHHHHHHHh------cCCCcEEEeCCCCCHHHHHHHHH-----cCCC-
Confidence            4577899999  444444433222 0000223455544432      24678889999999999999999     7985 


Q ss_pred             cCCCceeEecc
Q psy969           83 LNKDLFRIGAS   93 (106)
Q Consensus        83 ~~~~~~RiGtS   93 (106)
                          ..-||+.
T Consensus       200 ----gV~iGsA  206 (222)
T d1y0ea_         200 ----CSVVGGA  206 (222)
T ss_dssp             ----EEEECHH
T ss_pred             ----EEEEchh
Confidence                5667874

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.55  E-value=0.0098  Score=40.84  Aligned_cols=70  Identities=20%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             hhHHHhhCCCc-ccCC-CCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF-RTLH-GRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF-KTST-G~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+.+.++|+|| .++. |....... .+  .....+. +..+      ...+-|=++|||+|.+|+.++++     +|++
T Consensus       143 a~~a~~~Gad~i~~~~~~~~~~~~~-~~--~~~~~~~-~~~~------~~~ipvia~GGI~t~~d~~~al~-----~GAd  207 (230)
T d1yxya1         143 GLVAHQAGIDFVGTTLSGYTPYSRQ-EA--GPDVALI-EALC------KAGIAVIAEGKIHSPEEAKKIND-----LGVA  207 (230)
T ss_dssp             HHHHHHTTCSEEECTTTTSSTTSCC-SS--SCCHHHH-HHHH------HTTCCEEEESCCCSHHHHHHHHT-----TCCS
T ss_pred             HHHHHhcCCCEEEeecccccccccc-cc--hHHHHHH-HHHh------cCCCeEEEeCCCCCHHHHHHHHH-----cCCC
Confidence            45678999999 5433 22211111 11  2222222 2211      23567779999999999999999     7995


Q ss_pred             ccCCCceeEecc
Q psy969           82 WLNKDLFRIGAS   93 (106)
Q Consensus        82 w~~~~~~RiGtS   93 (106)
                           ..-+|+.
T Consensus       208 -----~V~vGsA  214 (230)
T d1yxya1         208 -----GIVVGGA  214 (230)
T ss_dssp             -----EEEECHH
T ss_pred             -----EEEEChh
Confidence                 5667874

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.01  Score=44.10  Aligned_cols=57  Identities=16%  Similarity=0.134  Sum_probs=41.4

Q ss_pred             HHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccc---hHHHHHHHHhhC
Q psy969           40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS---LLNNILQELEAL  106 (106)
Q Consensus        40 ~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs---~~~~l~~~l~~~  106 (106)
                      +.++++++..++++-|=.+|||.|.+||.+++.     +||+     ..-+||+-   +..++.+.++.|
T Consensus       277 ~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~-----aGAs-----aVQv~Tal~~~Gp~ii~~I~~eL  336 (336)
T d1f76a_         277 EIIRRLSLELNGRLPIIGVGGIDSVIAAREKIA-----AGAS-----LVQIYSGFIFKGPPLIKEIVTHI  336 (336)
T ss_dssp             HHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHH-----HTCS-----EEEESHHHHHHCHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHH-----cCCc-----HHHHHHHHHhcChHHHHHHHhhC
Confidence            445556666778899999999999999999999     6985     55567752   444555555443

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=95.53  E-value=0.0095  Score=43.32  Aligned_cols=37  Identities=22%  Similarity=0.350  Sum_probs=30.9

Q ss_pred             HHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           40 SAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        40 ~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+++.++..++++-|=++|||+|.+||.+++.     +||+
T Consensus       230 ~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~-----aGA~  266 (311)
T d1juba_         230 ANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLL-----CGAT  266 (311)
T ss_dssp             HHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHH-----HTCS
T ss_pred             HHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHH-----cCCC
Confidence            344555666788899999999999999999999     6996

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.20  E-value=0.028  Score=43.37  Aligned_cols=45  Identities=20%  Similarity=0.243  Sum_probs=35.8

Q ss_pred             HHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969           39 CSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS   93 (106)
Q Consensus        39 ~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS   93 (106)
                      .+.++++++..++++-|=.+|||.|.+||.+++.     +||+     ..-|+|+
T Consensus       329 l~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~-----AGAs-----~VQv~T~  373 (409)
T d1tv5a1         329 TKFICEMYNYTNKQIPIIASGGIFSGLDALEKIE-----AGAS-----VCQLYSC  373 (409)
T ss_dssp             HHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH-----TTEE-----EEEESHH
T ss_pred             HHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHH-----cCCC-----HHhhhhH
Confidence            3455666777888999999999999999999999     7995     3346664

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.97  E-value=0.043  Score=41.07  Aligned_cols=64  Identities=16%  Similarity=0.089  Sum_probs=44.2

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++.|.++|+|.  -+.+|...-...     +..+..+.+..    +..++++-|=++||||+-.|+...+.     |||+
T Consensus       231 a~~a~~~G~d~i~vsnhggr~~d~~-----~~~~~~l~~i~----~~~~~~~~iiadGGIR~G~Dv~KALA-----LGA~  296 (349)
T d1tb3a1         231 AELAMKHNVQGIVVSNHGGRQLDEV-----SASIDALREVV----AAVKGKIEVYMDGGVRTGTDVLKALA-----LGAR  296 (349)
T ss_dssp             HHHHHHTTCSEEEECCGGGTSSCSB-----CCHHHHHHHHH----HHHTTSSEEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHhhccceeeecccccccccc-----ccchhhcceee----eccCCCeeEEeccCcCcHHHHHHHHH-----cCCC
Confidence            56788999999  555553221122     33333333332    22478999999999999999999999     7996

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.018  Score=43.31  Aligned_cols=43  Identities=21%  Similarity=0.381  Sum_probs=33.5

Q ss_pred             HHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969           41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS   93 (106)
Q Consensus        41 ~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS   93 (106)
                      .++..++..+.++-|=++|||.|.+||.+|+.     +||+     ..-|+|+
T Consensus       287 ~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~-----aGAs-----~VQi~Ta  329 (367)
T d1d3ga_         287 TIREMYALTQGRVPIIGVGGVSSGQDALEKIR-----AGAS-----LVQLYTA  329 (367)
T ss_dssp             HHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH-----HTCS-----EEEESHH
T ss_pred             HHHHHHHHhCCCccEEEECCCCCHHHHHHHHH-----cCCC-----HHHhhHH
Confidence            34455555677899999999999999999999     6995     4445554

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=93.74  E-value=0.09  Score=38.19  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=27.3

Q ss_pred             CceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEecc
Q psy969           51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGAS   93 (106)
Q Consensus        51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtS   93 (106)
                      +++-|=+.||||+..|+.+.+.     +||+     ..-||..
T Consensus       230 ~~v~viadGGIr~g~Dv~KAla-----lGAd-----aV~iGr~  262 (329)
T d1p0ka_         230 PASTMIASGGLQDALDVAKAIA-----LGAS-----CTGMAGH  262 (329)
T ss_dssp             TTSEEEEESSCCSHHHHHHHHH-----TTCS-----EEEECHH
T ss_pred             CCceEEEcCCcccHHHHHHHHH-----cCCC-----chhccHH
Confidence            5688999999999999999999     8996     4445553

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=93.67  E-value=0.055  Score=41.39  Aligned_cols=75  Identities=21%  Similarity=0.231  Sum_probs=50.8

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCC-----CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSY-----GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~-----~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      .+..+++|||+ |=.-|=+..-+|.     +-|=+.+|....++.++|.+..+..+-|=+-||||+.-|...-+.     
T Consensus       166 ~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla-----  240 (362)
T d1pvna1         166 FRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA-----  240 (362)
T ss_dssp             HHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH-----
T ss_pred             HHHHHHhCCcEEEecccccccccchhhhccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEE-----
Confidence            45678999999 9765522111110     222244555556666666666677888999999999999988888     


Q ss_pred             CCCCcc
Q psy969           78 LGPDWL   83 (106)
Q Consensus        78 lGa~w~   83 (106)
                      +|+|+|
T Consensus       241 ~GAd~V  246 (362)
T d1pvna1         241 MGADFI  246 (362)
T ss_dssp             TTCSEE
T ss_pred             Eeccce
Confidence            799854

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=93.17  E-value=0.18  Score=35.65  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=28.0

Q ss_pred             CCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccc
Q psy969           50 GKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASS   94 (106)
Q Consensus        50 ~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs   94 (106)
                      .+++-|=+.||||+..|+.+.+.     |||+     ..-||+.-
T Consensus       232 ~~~i~Ii~dGGIr~g~Dv~KALa-----lGAd-----aV~iGr~~  266 (310)
T d1vcfa1         232 LPHLPLVASGGVYTGTDGAKALA-----LGAD-----LLAVARPL  266 (310)
T ss_dssp             CSSSCEEEESSCCSHHHHHHHHH-----HTCS-----EEEECGGG
T ss_pred             cCCCeEEeCCCCCchHHHHHHHH-----hCCC-----EeeEhHHH
Confidence            46788889999999999999999     6997     33455543

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.70  E-value=0.073  Score=38.73  Aligned_cols=35  Identities=17%  Similarity=0.367  Sum_probs=27.1

Q ss_pred             HHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           41 AIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        41 ~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      .+++.++.. +.+-|=++|||+|.+|+.+++.     +||+
T Consensus       245 ~v~~~~~~~-~~ipIi~~GGI~~~~d~~~~l~-----aGA~  279 (312)
T d1gtea2         245 AVTTIARAL-PGFPILATGGIDSAESGLQFLH-----SGAS  279 (312)
T ss_dssp             HHHHHHHHS-TTCCEEEESSCCSHHHHHHHHH-----TTCS
T ss_pred             HHHHHHHHc-CCCcEEEEcCCCCHHHHHHHHH-----cCCC
Confidence            333444444 3488999999999999999998     7996

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=92.49  E-value=0.041  Score=39.51  Aligned_cols=25  Identities=20%  Similarity=0.385  Sum_probs=22.7

Q ss_pred             ceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           52 KIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        52 ~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      ++-|=++|||+|.+||.+++.     +|++
T Consensus       241 ~ipIig~GGI~s~~Da~~~i~-----~GAd  265 (311)
T d1ep3a_         241 DIPIIGMGGVANAQDVLEMYM-----AGAS  265 (311)
T ss_dssp             SSCEEECSSCCSHHHHHHHHH-----HTCS
T ss_pred             ceeEEEeCCcCCHHHHHHHHH-----cCCC
Confidence            688899999999999999997     5986

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=92.28  E-value=0.17  Score=37.42  Aligned_cols=64  Identities=17%  Similarity=0.161  Sum_probs=43.0

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +..|.+.|+|.  -...|.-.-...     +.-+..+.+..+    ..++++-|=++||||+--|+..-|.     |||+
T Consensus       238 a~~a~~~g~~~~~vsnhggr~ld~~-----~~~~~~l~~i~~----~~~~~~~iiadGGIR~G~Di~KALa-----LGAd  303 (359)
T d1goxa_         238 ARLAVQHGAAGIIVSNHGARQLDYV-----PATIMALEEVVK----AAQGRIPVFLDGGVRRGTDVFKALA-----LGAA  303 (359)
T ss_dssp             HHHHHHTTCSEEEECCGGGTSSTTC-----CCHHHHHHHHHH----HTTTSSCEEEESSCCSHHHHHHHHH-----HTCS
T ss_pred             HHHHHHccccceecccccccccccc-----cchhhhchhhhh----ccCCccceeeccCcCcHHHHHHHHH-----cCCC
Confidence            45778889998  555654322222     222333333222    2578899999999999999999999     6996

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=91.54  E-value=0.15  Score=43.08  Aligned_cols=70  Identities=20%  Similarity=0.184  Sum_probs=44.6

Q ss_pred             HHHhhCCCcccCCCC-CCCCCCC-------CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhh
Q psy969            6 KVAFKGSNFRTLHGR-GPDSTSY-------GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIM   77 (106)
Q Consensus         6 iai~aGadFKTSTG~-~~~gat~-------~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~   77 (106)
                      .+.++|+||-|=.|. +..||+.       |-|=...+....+++.+  ....++|.|=++||++|..|+...+.     
T Consensus       590 ~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~~--~glr~~V~l~a~Ggl~t~~Dv~ka~a-----  662 (771)
T d1ea0a2         590 GVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTL--NRLRHRVRLRTDGGLKTGRDIVIAAM-----  662 (771)
T ss_dssp             HHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHT--TTCTTTSEEEEESSCCSHHHHHHHHH-----
T ss_pred             HHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHHHHHHHHH--cCCCCceEEEEeCCCCCHHHHHHHHH-----
Confidence            356789999555554 3344541       22222233333333322  12467899999999999999999998     


Q ss_pred             CCCCc
Q psy969           78 LGPDW   82 (106)
Q Consensus        78 lGa~w   82 (106)
                      |||||
T Consensus       663 LGAD~  667 (771)
T d1ea0a2         663 LGAEE  667 (771)
T ss_dssp             TTCSE
T ss_pred             hCCCc
Confidence            89974

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=91.03  E-value=0.26  Score=37.79  Aligned_cols=65  Identities=26%  Similarity=0.343  Sum_probs=44.4

Q ss_pred             hhhHHHhhCCCc---ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969            3 RPRKVAFKGSNF---RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         3 ~~~iai~aGadF---KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG   79 (106)
                      ++...+++|+|+   .+++|+.           +.+..+.+.+++.   . +.+-| .+|+|-|++.|+++++     .|
T Consensus       155 ra~~L~~aG~D~ivID~AhG~s-----------~~~~~~i~~ik~~---~-~~v~v-IaGNV~T~e~a~~L~~-----~G  213 (388)
T d1eepa_         155 RVEELVKAHVDILVIDSAHGHS-----------TRIIELIKKIKTK---Y-PNLDL-IAGNIVTKEAALDLIS-----VG  213 (388)
T ss_dssp             HHHHHHHTTCSEEEECCSCCSS-----------HHHHHHHHHHHHH---C-TTCEE-EEEEECSHHHHHHHHT-----TT
T ss_pred             HHHHHHhhccceeeeeccccch-----------HHHHHHHHHHHHH---C-CCCce-eeccccCHHHHHHHHh-----cC
Confidence            455678899999   7777753           3444444444432   2 44555 7799999999999999     79


Q ss_pred             CCccCCCceeEecc
Q psy969           80 PDWLNKDLFRIGAS   93 (106)
Q Consensus        80 a~w~~~~~~RiGtS   93 (106)
                      ++     ..++|-.
T Consensus       214 aD-----~VkVGiG  222 (388)
T d1eepa_         214 AD-----CLKVGIG  222 (388)
T ss_dssp             CS-----EEEECSS
T ss_pred             CC-----eeeeccc
Confidence            86     4555553

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.74  E-value=0.45  Score=36.09  Aligned_cols=68  Identities=18%  Similarity=0.140  Sum_probs=42.6

Q ss_pred             hhHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHH-hhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969            4 PRKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHF-HKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP   80 (106)
Q Consensus         4 ~~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~-~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa   80 (106)
                      +..+.++|+|+  ....|-......     +..+..+-+..... .+..++++-|=++||||+--|+..-|.     |||
T Consensus       260 a~~~~~~G~~~i~vsnhggr~~d~~-----~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALA-----LGA  329 (414)
T d1kbia1         260 VIKAAEIGVSGVVLSNHGGRQLDFS-----RAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALC-----LGA  329 (414)
T ss_dssp             HHHHHHTTCSEEEECCTTTTSSTTC-----CCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHH-----HTC
T ss_pred             HHHHHhcCCcceeeccccccccccc-----cccccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHH-----cCC
Confidence            45678899998  555543221122     22233332222111 122467899999999999999999999     699


Q ss_pred             C
Q psy969           81 D   81 (106)
Q Consensus        81 ~   81 (106)
                      +
T Consensus       330 d  330 (414)
T d1kbia1         330 K  330 (414)
T ss_dssp             S
T ss_pred             C
Confidence            6

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.90  E-value=0.23  Score=35.16  Aligned_cols=25  Identities=20%  Similarity=0.620  Sum_probs=21.4

Q ss_pred             CceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           51 KKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        51 ~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.+.+=++||| +.+...+|++     +|+.
T Consensus       148 p~i~~iptGGI-~~~n~~~~l~-----aga~  172 (202)
T d1wa3a1         148 PNVKFVPTGGV-NLDNVCEWFK-----AGVL  172 (202)
T ss_dssp             TTCEEEEBSSC-CTTTHHHHHH-----HTCS
T ss_pred             cCCcEEeeCCC-CHHHHHHHHH-----CCCe
Confidence            46889999999 7899999999     5873

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=89.71  E-value=0.38  Score=40.84  Aligned_cols=67  Identities=18%  Similarity=0.186  Sum_probs=45.5

Q ss_pred             HhhCCCcccCCCC-CCCCCCC-------CCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCC
Q psy969            8 AFKGSNFRTLHGR-GPDSTSY-------GNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLG   79 (106)
Q Consensus         8 i~aGadFKTSTG~-~~~gat~-------~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lG   79 (106)
                      .++|+||-|=.|+ +..||..       |-|....+....+++...  ....+|-+=++||++|..|+...+.     ||
T Consensus       619 aka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~a~~~L~~~--glR~~V~Lia~Ggl~t~~Dv~ka~a-----LG  691 (809)
T d1ofda2         619 AKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMEN--QLRDRVLLRADGGLKTGWDVVMAAL-----MG  691 (809)
T ss_dssp             HHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHT--TCGGGCEEEEESSCCSHHHHHHHHH-----TT
T ss_pred             hhcCCCEEEEeCCCCccccccHHHHhcCCccHHHHHHHHHHHHHHc--CCCCceEEEEeCCCCCHHHHHHHHH-----hC
Confidence            4789999555554 3345552       444444444444444322  2456899999999999999999998     89


Q ss_pred             CC
Q psy969           80 PD   81 (106)
Q Consensus        80 a~   81 (106)
                      ||
T Consensus       692 AD  693 (809)
T d1ofda2         692 AE  693 (809)
T ss_dssp             CS
T ss_pred             CC
Confidence            97

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.68  E-value=0.26  Score=34.02  Aligned_cols=62  Identities=13%  Similarity=0.178  Sum_probs=44.2

Q ss_pred             HHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccC
Q psy969            6 KVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus         6 iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                      .++++|+|. - --     +-+     |++++...+.++.    ..+++-|=+|||| +++...+|..     .|.|   
T Consensus        94 ~a~~~~~diIm-LD-----N~s-----p~~~k~~v~~~~~----~~~~i~lEaSGgI-~~~ni~~ya~-----~GvD---  149 (169)
T d1qpoa1          94 AVLPEKPELIL-LD-----NFA-----VWQTQTAVQRRDS----RAPTVMLESSGGL-SLQTAATYAE-----TGVD---  149 (169)
T ss_dssp             HHGGGCCSEEE-EE-----TCC-----HHHHHHHHHHHHH----HCTTCEEEEESSC-CTTTHHHHHH-----TTCS---
T ss_pred             hhhhcCCcEEE-ec-----CcC-----hHhHHHHHHHhhc----cCCeeEEEEeCCC-CHHHHHHHHH-----cCCC---
Confidence            455666666 3 11     234     7777766655543    3578999999999 8899999999     7997   


Q ss_pred             CCceeEeccch
Q psy969           85 KDLFRIGASSL   95 (106)
Q Consensus        85 ~~~~RiGtSs~   95 (106)
                          +|.+|++
T Consensus       150 ----~IS~gal  156 (169)
T d1qpoa1         150 ----YLAVGAL  156 (169)
T ss_dssp             ----EEECGGG
T ss_pred             ----EEECCcc
Confidence                8877764

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.22  E-value=0.081  Score=36.86  Aligned_cols=63  Identities=21%  Similarity=0.212  Sum_probs=46.0

Q ss_pred             hHHHhhCCCc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCcc
Q psy969            5 RKVAFKGSNF-RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWL   83 (106)
Q Consensus         5 ~iai~aGadF-KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~   83 (106)
                      ..++++|+|. .-      .+-+     |++++.+.+.++..    ++++-|=+||||. ++.+.+|.+     .|+|  
T Consensus        92 ~~a~~~g~d~i~L------Dn~~-----pe~~k~~~~~lk~~----~~~i~lEaSGGI~-~~ni~~~a~-----~GVD--  148 (170)
T d1o4ua1          92 LRAVEAGADIVML------DNLS-----PEEVKDISRRIKDI----NPNVIVEVSGGIT-EENVSLYDF-----ETVD--  148 (170)
T ss_dssp             HHHHHTTCSEEEE------ESCC-----HHHHHHHHHHHHHH----CTTSEEEEEECCC-TTTGGGGCC-----TTCC--
T ss_pred             HHHHhcCccEEEE------cCcC-----hhhHhHHHHHHHhh----CCcEEEEEECCCC-HHHHHHHHH-----cCCC--
Confidence            3567788888 52      2345     88888887777653    6889999999995 566667766     6876  


Q ss_pred             CCCceeEeccch
Q psy969           84 NKDLFRIGASSL   95 (106)
Q Consensus        84 ~~~~~RiGtSs~   95 (106)
                           +|.+|++
T Consensus       149 -----~Is~g~l  155 (170)
T d1o4ua1         149 -----VISSSRL  155 (170)
T ss_dssp             -----EEEEGGG
T ss_pred             -----EEEcCcc
Confidence                 8877765

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.47  E-value=0.18  Score=36.47  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=26.2

Q ss_pred             HHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           42 IKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        42 i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +.++++..+..+ |=+.|||.|.+||.+++.     +||+
T Consensus       233 v~~~~~~~~~~~-Iig~GGI~s~~Da~e~i~-----aGAs  266 (312)
T d2b4ga1         233 VNAFFRRCPDKL-VFGCGGVYSGEEAFLHIL-----AGAS  266 (312)
T ss_dssp             HHHHHHHCTTSE-EEEESSCCSHHHHHHHHH-----HTEE
T ss_pred             HHHHHHHcCCCc-eeecCCcCCHHHHHHHHH-----cCCC
Confidence            334455566666 559999999999999999     6985

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=88.27  E-value=0.81  Score=34.20  Aligned_cols=65  Identities=18%  Similarity=0.294  Sum_probs=40.9

Q ss_pred             hhHHHhhCCCc-ccCCCCCCCCCCCCCCCch---------HHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHH
Q psy969            4 PRKVAFKGSNF-RTLHGRGPDSTSYGNVCNT---------CGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYL   73 (106)
Q Consensus         4 ~~iai~aGadF-KTSTG~~~~gat~~~~~~~---------~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l   73 (106)
                      ++..+++|||. |=  |.+++     +.|..         .+-.|.+.-+..   ..-.+-|=|.|||++.-+..+-+. 
T Consensus       153 a~~l~~~GaD~v~V--Gig~G-----s~ctt~~~~G~g~p~~sai~~~~~~~---~~~~vpvIAdGGi~~~gdiakAla-  221 (330)
T d1vrda1         153 TEALIKAGADAVKV--GVGPG-----SICTTRVVAGVGVPQLTAVMECSEVA---RKYDVPIIADGGIRYSGDIVKALA-  221 (330)
T ss_dssp             HHHHHHTTCSEEEE--CSSCS-----TTCHHHHHHCCCCCHHHHHHHHHHHH---HTTTCCEEEESCCCSHHHHHHHHH-
T ss_pred             HHHHHHcCCCEEee--ccccC-----ccccccceeccccccchhHHHHHHHH---HhcCceEEecCCcccCCchheeee-
Confidence            45567899999 86  44333     22222         222333322111   134577889999999999999998 


Q ss_pred             HHhhCCCCcc
Q psy969           74 VLIMLGPDWL   83 (106)
Q Consensus        74 ~~~~lGa~w~   83 (106)
                          +|+|++
T Consensus       222 ----~GAd~V  227 (330)
T d1vrda1         222 ----AGAESV  227 (330)
T ss_dssp             ----TTCSEE
T ss_pred             ----ccCcee
Confidence                799854

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=87.16  E-value=0.73  Score=34.43  Aligned_cols=80  Identities=16%  Similarity=0.235  Sum_probs=54.2

Q ss_pred             hhhHHHhhCCCc---ccCCCCC------C----CCCCCCCCCchH-HHHHHHHHHHHhhhcCC-ceeEeecC--------
Q psy969            3 RPRKVAFKGSNF---RTLHGRG------P----DSTSYGNVCNTC-GIIMCSAIKHFHKLSGK-KIGLKPAG--------   59 (106)
Q Consensus         3 ~~~iai~aGadF---KTSTG~~------~----~gat~~~~~~~~-v~lm~~~i~~~~~~~~~-~vgiKaaG--------   59 (106)
                      +++.|.++|.|.   --.+||-      |    ..--||. ++|. .++++|.+++.++..++ .|+++.+.        
T Consensus       165 AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGG-s~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~  243 (363)
T d1vyra_         165 AVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGG-SVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVD  243 (363)
T ss_dssp             HHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSS-SHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBC
T ss_pred             HHHHHHHhccceeeecccCceeeeeeecCccccccccccc-chhhhhHhHHHHHhhhhhhcCCCCcceeecccccccchh
Confidence            577899999999   6677763      1    1111221 1554 78888888888777765 58888874        


Q ss_pred             -CCCCHHHHHHHHHHHHhhCCCCccC
Q psy969           60 -GISTFEDSVRWIYLVLIMLGPDWLN   84 (106)
Q Consensus        60 -GIrt~~~a~~~i~l~~~~lGa~w~~   84 (106)
                       |..+.++++++++..++ .|.+|++
T Consensus       244 ~gg~~~~e~~~~~~~l~~-~gvd~i~  268 (363)
T d1vyra_         244 NGPNEEADALYLIEELAK-RGIAYLH  268 (363)
T ss_dssp             CCTTHHHHHHHHHHHHHH-TTCSEEE
T ss_pred             hcccchHHHHHHHHHHHh-cCCeeee
Confidence             45678888888776543 6888753

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.70  E-value=0.5  Score=34.26  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=21.5

Q ss_pred             eeEeecCCCCCHHHHHHHHHHHHhhCCCC
Q psy969           53 IGLKPAGGISTFEDSVRWIYLVLIMLGPD   81 (106)
Q Consensus        53 vgiKaaGGIrt~~~a~~~i~l~~~~lGa~   81 (106)
                      +-|=++||||+--|+..-|.     |||+
T Consensus       276 ~~viasGGIR~G~Dv~KALa-----LGAd  299 (353)
T d1p4ca_         276 KPVLIDSGFRRGSDIVKALA-----LGAE  299 (353)
T ss_dssp             SCEEECSSCCSHHHHHHHHH-----TTCS
T ss_pred             cceeecCCcCchHHHHHHHH-----cCCC
Confidence            45677999999999999999     7996

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.32  E-value=1.7  Score=31.62  Aligned_cols=69  Identities=17%  Similarity=0.104  Sum_probs=45.7

Q ss_pred             hHHHhhCCCc--ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCc
Q psy969            5 RKVAFKGSNF--RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDW   82 (106)
Q Consensus         5 ~iai~aGadF--KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w   82 (106)
                      +.+.++|+++  -+.-....-...     ++...-+...       .+..+-+=+.+||+|.+|+..+.+     +|+  
T Consensus       166 ~~a~~~~a~iIGINnRnL~t~~vd-----~~~~~~L~~~-------ip~~~~~IaESGI~t~~dv~~l~~-----~G~--  226 (247)
T d1a53a_         166 DIALRIGARFIGINSRDLETLEIN-----KENQRKLISM-------IPSNVVKVAESGISERNEIEELRK-----LGV--  226 (247)
T ss_dssp             HHHHHTTCSEEEEESBCTTTCCBC-----HHHHHHHHHH-------SCTTSEEEEESCCCCHHHHHHHHH-----TTC--
T ss_pred             HHHHhCCCCeEeeeccChhhhhhh-----hhHHHHHHhh-------CCCCCeEEEecCCCCHHHHHHHHH-----CCC--
Confidence            3467778887  555554433344     4444444443       355555556689999999999988     788  


Q ss_pred             cCCCceeEeccch
Q psy969           83 LNKDLFRIGASSL   95 (106)
Q Consensus        83 ~~~~~~RiGtSs~   95 (106)
                         +.+-||+|=.
T Consensus       227 ---davLIGeaLm  236 (247)
T d1a53a_         227 ---NAFLIGSSLM  236 (247)
T ss_dssp             ---CEEEECHHHH
T ss_pred             ---CEEEECHHHc
Confidence               4788998743

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.88  E-value=1.2  Score=32.34  Aligned_cols=46  Identities=17%  Similarity=0.211  Sum_probs=29.6

Q ss_pred             chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEec
Q psy969           32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGA   92 (106)
Q Consensus        32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGt   92 (106)
                      ++.+.-+.+.+|++   +..++.+  =-||+|.||+.++++     .|+|     -.-+|+
T Consensus       176 ~~~~~~~v~~vk~~---t~~Pv~v--GFGI~~~e~v~~~~~-----~~AD-----GvIVGS  221 (248)
T d1geqa_         176 PKTAYDLLRRAKRI---CRNKVAV--GFGVSKREHVVSLLK-----EGAN-----GVVVGS  221 (248)
T ss_dssp             CHHHHHHHHHHHHH---CSSCEEE--ESCCCSHHHHHHHHH-----TTCS-----EEEECH
T ss_pred             hhhHHHHHHHHhhh---cccceee--ecccCCHHHHHHHHh-----cCCC-----EEEECH
Confidence            34566565556554   4455554  239999999999988     4664     345554

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=80.78  E-value=6.2  Score=26.84  Aligned_cols=53  Identities=17%  Similarity=0.137  Sum_probs=35.1

Q ss_pred             chHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCCCccCCCceeEeccch
Q psy969           32 NTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGPDWLNKDLFRIGASSL   95 (106)
Q Consensus        32 ~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa~w~~~~~~RiGtSs~   95 (106)
                      +++++.+.+.++... ...+.+.|=.-|||++.+++..+++     +|+|     -+-+|+.++
T Consensus       156 ~~~~~~i~~~i~~i~-~~~~~v~vlygGsV~~~n~~~~~~~-----~g~d-----GvLVGsAsl  208 (224)
T d1hg3a_         156 KAKPEVITNTVELVK-KVNPEVKVLCGAGISTGEDVKKAIE-----LGTV-----GVLLASGVT  208 (224)
T ss_dssp             TSCTHHHHHHHHHHH-HHCTTSEEEEESSCCSHHHHHHHHH-----TTCS-----EEEESHHHH
T ss_pred             chhhhhhhhhhhhhh-hhccccceEEeCCcCCHHHHHHHHh-----CCCC-----EEEEcceee
Confidence            334444444443332 2356777878899999999999998     6874     567777654

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.42  E-value=1.7  Score=32.95  Aligned_cols=63  Identities=21%  Similarity=0.223  Sum_probs=40.9

Q ss_pred             hhHHHhhCCCc---ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhcCCceeEeecCCCCCHHHHHHHHHHHHhhCCC
Q psy969            4 PRKVAFKGSNF---RTLHGRGPDSTSYGNVCNTCGIIMCSAIKHFHKLSGKKIGLKPAGGISTFEDSVRWIYLVLIMLGP   80 (106)
Q Consensus         4 ~~iai~aGadF---KTSTG~~~~gat~~~~~~~~v~lm~~~i~~~~~~~~~~vgiKaaGGIrt~~~a~~~i~l~~~~lGa   80 (106)
                      ....+++|+|+   -++.|+           .+.+..+++.+++.   . +.+ ...+|.|-|.+.++.+++     .|+
T Consensus       112 ~~~l~~agvd~ivID~A~G~-----------s~~~~~~i~~ik~~---~-~~~-~iIaGNV~T~e~a~~L~~-----aGa  170 (365)
T d1zfja1         112 AEALFEAGADAIVIDTAHGH-----------SAGVLRKIAEIRAH---F-PNR-TLIAGNIATAEGARALYD-----AGV  170 (365)
T ss_dssp             HHHHHHHTCSEEEECCSCTT-----------CHHHHHHHHHHHHH---C-SSS-CEEEEEECSHHHHHHHHH-----TTC
T ss_pred             HHHHHHcCCCEEEEECCccc-----------ccchhHHHHHHHhh---C-CCc-ceeecccccHHHHHHHHh-----cCC
Confidence            45668899998   445543           22333344444433   3 233 346899999999999999     798


Q ss_pred             CccCCCceeEec
Q psy969           81 DWLNKDLFRIGA   92 (106)
Q Consensus        81 ~w~~~~~~RiGt   92 (106)
                      |     ..|+|.
T Consensus       171 D-----~VkVGi  177 (365)
T d1zfja1         171 D-----VVKVGI  177 (365)
T ss_dssp             S-----EEEECS
T ss_pred             c-----eEEeee
Confidence            6     456664