Psyllid ID: psy9709

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500
Protein Sequence
MPSLVYNTPPEPSSNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEEcccccccEEEEEcccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccEEEEccccccccccEEEcccccccccccccccccccccccccccEEEEEEccccccccEEEEcccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccEEEEccccccccccEEEccccccHHHHHHHHHccccccccccccccccccccccccccHHHHccccHHHHHHHHccccccccccHHHHHcccccccccccccHHHHHHHcccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEHHHHHcHHHHHHHHHccccccccHHHHHHHHHccccccEEEEccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEEEEccccccEEEEEEcccccEEEHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEccccEEEEEccccEEEEEEEEEEcccHHHHHHHHHHcccHHHHHHcccEEEEEEccccccEEEEEEcccccEEEHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEccccEEEEEccccEEEEEEEcccccccHHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHcccEEEcHHHHHHHHHccccccEEcHHHHcccccEEccccEEcHHHHHHHccccccccEEcccEEEEEEEccccccEEEEEEEccccccEEEEEEEEEcccHHHHHHHHHcccccccccHHHHHHcccccccccEEEccccccEcccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mpslvyntppepssnnnsiqtqvpligvidegTRTVRFAIISALTQEEvvshsmdistispqegwaeqdpMEILQAVQTTMDRAIEKLSahglsrddivTLGITNQRETTVVWdlntgeplynaidkmpslvyntppepssntnnnsiqtqvpligvidegTRTVRFAIISALTQEEvvshsmdistispqegwaeqdpMEILQAVQTTMDRAIEKLSahglsrddivTLGITNQRETTVVWdlntgeplynaivwsdtradniVDQVlakfpdqdkdylkpicglpvspyfsALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWnltgrtchvtdVTNASRTMLMNIdslqwdpllckyfavpptilpeirssseiygkvhsnnglVTTVAYqfgpdatpiyalEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTgdvyfvpafgglyapywrkdargvicgmtqfttkGHIIRAALEAICFQTRDILELY
Flexible Loop (DISEMBL)
mpslvyntppepssnnnsiqTQVPLIGVIDEGTRTVRFAIISALtqeevvshsmDISTIspqegwaeqDPMEILQAVQTTMDRAIEKLsahglsrddivtlgitnqrettvvWDLNTGEPLYNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALtqeevvshsmDISTIspqegwaeqDPMEILQAVQTTMDRAIEKLsahglsrddivtlgitnqRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY
Low Complexity Region (SEG)
MPSLVYNTppepssnnnsIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIDKMPSLVYntppepssntnnnsIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY
Disordered region (IsUnstruct)
*********************QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDI***************EILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIDKMPSLVY****************TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDI***************EILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDIL***
Disordered Region (DISOPRED)
************************LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY
Disordered Region (DISEMBL)
***************NNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY
Disordered Region (DISPRO)
********************TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSLVYNTPPEPSSNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	500	2.2.26 [Sep-21-2011]
Q63060	524	Glycerol kinase OS=Rattus	yes	N/A	0.69	0.658	0.47	1e-105
Q14409	553	Putative glycerol kinase	yes	N/A	0.69	0.623	0.467	1e-104
Q4R4D5	553	Glycerol kinase 2 OS=Maca	N/A	N/A	0.69	0.623	0.457	1e-101
Q14410	553	Glycerol kinase 2 OS=Homo	no	N/A	0.69	0.623	0.455	1e-101
Q64516	559	Glycerol kinase OS=Mus mu	yes	N/A	0.69	0.617	0.455	1e-100
Q0IID9	559	Glycerol kinase OS=Bos ta	no	N/A	0.69	0.617	0.453	1e-100
Q9WU65	554	Glycerol kinase 2 OS=Mus	no	N/A	0.69	0.622	0.445	1e-100
P32189	559	Glycerol kinase OS=Homo s	yes	N/A	0.69	0.617	0.450	2e-99
Q21944	502	Probable glycerol kinase	yes	N/A	0.684	0.681	0.420	2e-93
A5CS23	505	Glycerol kinase OS=Clavib	yes	N/A	0.672	0.665	0.443	8e-92

>sp|Q63060|GLPK_RAT Glycerol kinase OS=Rattus norvegicus GN=Gk PE=2 SV=1

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/400 (47%), Positives = 251/400 (62%), Gaps = 55/400 (13%)

Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
           PL+G +D+GT + RF + ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++
Sbjct: 11  PLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEK 70

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
             EKL    +   +I  +G++NQRETTVVWD  TGEPLYNA+VW D R  + V+++  + 
Sbjct: 71  TCEKLGQLNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDLRTQSTVEKLSKRI 130

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
           P  + +++K   GLP+S YFSA+KL WL+ NV  V+ A++ENR LFGT+D+WL+W+LTG 
Sbjct: 131 PGNN-NFVKSKTGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGTIDSWLIWSLTGG 189

Query: 333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG-------- 381
                H TDVTNASRTML NI SL+WD  LC++F +P  ILP +RSSSEIYG        
Sbjct: 190 INGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEILPNVRSSSEIYGLMKAGALE 249

Query: 382 -------------------------------------------KVHSNNGLVTTVAYQFG 398
                                                       V S +GL+TTVAY+ G
Sbjct: 250 GVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNTGHKCVFSEHGLLTTVAYKLG 309

Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
            D    YALEGS+A+AGA ++WLRDNL ++ +  E E LA++V T+   YFVPAF  LYA
Sbjct: 310 RDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKEVGTSYGCYFVPAFSALYA 369

Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           PYW   ARG+ICG+TQFT K HI  AALEA+CFQTR+IL+
Sbjct: 370 PYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILD 409

Key enzyme in the regulation of glycerol uptake and metabolism (By similarity). Increases the binding of activated glucocorticoid-receptor to nuclei in the presence of ATP.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 0

>sp|Q14409|GLPK3_HUMAN Putative glycerol kinase 3 OS=Homo sapiens GN=GK3P PE=5 SV=2

 Score =  380 bits (977), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/400 (46%), Positives = 250/400 (62%), Gaps = 55/400 (13%)

Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
           PL+G +D+GT + RF + ++ T E +  H ++I    P+EGW EQDP EIL +V   +++
Sbjct: 11  PLVGAVDQGTSSTRFLVFNSRTAELLSHHQVEIKQEFPREGWVEQDPKEILHSVYECIEK 70

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
             EKL    +   +I  +G++NQRETTVVWD  TGEPLYNA+VW D R  + V+ +  + 
Sbjct: 71  TCEKLGQLNIGISNIKAIGVSNQRETTVVWDKITGEPLYNAVVWLDLRTQSTVESLSKRI 130

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
           P  + +++K   GLP+S YFSA+KL WL+ NV  V++A++E R LFGT+D+WL+W+LTG 
Sbjct: 131 PGNN-NFVKSKTGLPLSTYFSAVKLRWLLDNVRKVQKAVEEKRALFGTIDSWLIWSLTGG 189

Query: 333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG-------- 381
                H TDVTNASRTML NI SL+WD  LC++F +P  ILP +RSSSEIYG        
Sbjct: 190 VNGGVHCTDVTNASRTMLFNIHSLEWDKQLCEFFGIPMEILPHVRSSSEIYGLMKAGALE 249

Query: 382 -------------------------------------------KVHSNNGLVTTVAYQFG 398
                                                       V S++GL+TTVAY+ G
Sbjct: 250 GVPISGCLGDQSAALVGQMCFQIGQAKNTYGTGCFLLCNTGHKCVFSDHGLLTTVAYKLG 309

Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
            D    YALEGS+A+AGA ++WLRDNL ++    E E LA++V T+   YFVPAF GLYA
Sbjct: 310 RDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVGTSYGCYFVPAFSGLYA 369

Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           PYW   ARG+ICG+TQFT K HI  AALEA+CFQTR+IL+
Sbjct: 370 PYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILD 409

Key enzyme in the regulation of glycerol uptake and metabolism.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q4R4D5|GLPK2_MACFA Glycerol kinase 2 OS=Macaca fascicularis GN=GK2 PE=2 SV=1

 Score =  370 bits (949), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/400 (45%), Positives = 247/400 (61%), Gaps = 55/400 (13%)

Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
           PL+G + +GT + RF + S+ T E +  H ++++   P+EGW EQDP EILQ+V   + R
Sbjct: 11  PLVGAVVQGTDSTRFLVFSSKTAELLSHHKVELTQEFPKEGWVEQDPKEILQSVYECIAR 70

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
             EKL    +   +I  +GI+NQRETTV+WD  TGEPLYNA+VW D R    V+ +  K 
Sbjct: 71  TCEKLDEMNIDISNIKAVGISNQRETTVIWDKLTGEPLYNAVVWLDLRTQTTVEDLSKKI 130

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
           P  + +++K   GLP+S YFSA+KL W++ NV  V++A++E R LFGT+D+WL+W+LTG 
Sbjct: 131 PG-NSNFVKSKTGLPLSTYFSAVKLRWMLDNVRHVQKAVEEGRALFGTIDSWLIWSLTGG 189

Query: 333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG-------- 381
                H TDVTNASRTML NI SL+WD  LC +F +P  +LP + SSSEIYG        
Sbjct: 190 VNGGVHCTDVTNASRTMLFNIHSLEWDKELCDFFEIPMDLLPNVFSSSEIYGLIKTGALE 249

Query: 382 -------------------------------------------KVHSNNGLVTTVAYQFG 398
                                                       V S +GL+TT+AY+ G
Sbjct: 250 GVPISGCLGDQCAALVGQMCFQEGQAKNTYGTGCFLLCNTGRKCVFSEHGLLTTIAYKLG 309

Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
            +    YALEGS+A+AGA ++WLRDNL +++   + E LA++V T+   YFVPAF GLYA
Sbjct: 310 KEKPAYYALEGSVAIAGAVIRWLRDNLGIIETSGDIEKLAKEVGTSYGCYFVPAFSGLYA 369

Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           PYW   ARG++CG+TQFT K HI  AALEA+CFQTR+ILE
Sbjct: 370 PYWEPSARGILCGLTQFTNKCHIAFAALEAVCFQTREILE 409

Key enzyme in the regulation of glycerol uptake and metabolism.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q14410|GLPK2_HUMAN Glycerol kinase 2 OS=Homo sapiens GN=GK2 PE=2 SV=2

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/400 (45%), Positives = 248/400 (62%), Gaps = 55/400 (13%)

Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
           PL+G + +GT + RF + ++ T E +  H ++++   P+EGW EQDP EILQ+V   + R
Sbjct: 11  PLVGAVVQGTNSTRFLVFNSKTAELLSHHKVELTQEFPKEGWVEQDPKEILQSVYECIAR 70

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
             EKL    +   +I  +G++NQRETTV+WD  TGEPLYNA+VW D R    V+ +  K 
Sbjct: 71  TCEKLDELNIDISNIKAVGVSNQRETTVIWDKLTGEPLYNAVVWLDLRTQTTVEDLSKKI 130

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
           P  + +++K   GLP+S YFSA+KL W++ NV +V++A++E R LFGT+D+WL+W+LTG 
Sbjct: 131 PG-NSNFVKSKTGLPLSTYFSAVKLRWMLDNVRNVQKAVEEGRALFGTIDSWLIWSLTGG 189

Query: 333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG-------- 381
                H TDVTNASRTML NI SL+WD  LC +F +P  +LP + SSSEIYG        
Sbjct: 190 VNGGVHCTDVTNASRTMLFNIHSLEWDKELCDFFEIPMDLLPNVFSSSEIYGLIKTGALE 249

Query: 382 -------------------------------------------KVHSNNGLVTTVAYQFG 398
                                                       V S +GL+TTVAY+ G
Sbjct: 250 GVPISGCLGDQCAALVGQMCFQEGQAKNTYGTGCFLLCNTGRKCVFSEHGLLTTVAYKLG 309

Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
            +    YALEGS+A+AGA ++WLRDNL +++   + E LA++V T+   YFVPAF GLYA
Sbjct: 310 REKPAYYALEGSVAIAGAVIRWLRDNLGIIETSGDIERLAKEVGTSYGCYFVPAFSGLYA 369

Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           PYW   ARG++CG+TQFT K HI  AALEA+CFQTR+ILE
Sbjct: 370 PYWEPSARGILCGLTQFTNKCHIAFAALEAVCFQTREILE 409

Key enzyme in the regulation of glycerol uptake and metabolism.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q64516|GLPK_MOUSE Glycerol kinase OS=Mus musculus GN=Gk PE=2 SV=2

 Score =  366 bits (939), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/406 (45%), Positives = 248/406 (61%), Gaps = 61/406 (15%)

Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
           PL+G +D+GT + RF + ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++
Sbjct: 11  PLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEK 70

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
             EKL    +   +I  +G++NQRETTVVWD  TGEPLYNA+VW D R  + V+ +  + 
Sbjct: 71  TCEKLGQLNIDISNIKAIGVSNQRETTVVWDKVTGEPLYNAVVWLDLRTQSTVENLSKRI 130

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
           P  + +++K   GLP+S YFSA+KL WL+ NV  V+ A++ENR LFGT+D+WL+W+LTG 
Sbjct: 131 PGNN-NFVKSKTGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGTIDSWLIWSLTGG 189

Query: 333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV---HS- 385
                H TDVTNASRTML NI SL+WD  LC++F +P  ILP +RSSSEIYG +   HS 
Sbjct: 190 IHGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEILPNVRSSSEIYGLMKISHSL 249

Query: 386 -----------------NNGLVTTVAYQ-------------------------------- 396
                            +  LV  + +Q                                
Sbjct: 250 KAGALEGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNTGHKCVFSEHGLLTT 309

Query: 397 ----FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPA 452
                G D    YALEGS+A+AGA ++WLRDNL ++ +  E E LA++V T+   YFVPA
Sbjct: 310 VAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKEVGTSYGCYFVPA 369

Query: 453 FGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           F GLYAPYW   ARG+ICG+TQFT K HI  AALEA+CFQTR+IL+
Sbjct: 370 FSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILD 415

Key enzyme in the regulation of glycerol uptake and metabolism.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q0IID9|GLPK_BOVIN Glycerol kinase OS=Bos taurus GN=GK PE=2 SV=1

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/406 (45%), Positives = 249/406 (61%), Gaps = 61/406 (15%)

Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
           PL+G +D+GT + RF + ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++
Sbjct: 11  PLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEK 70

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
             EKL    +   +I  +G++NQRETTVVWD  TGEPLYNA+VW D R  + V+ +  + 
Sbjct: 71  TCEKLGQLNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDLRTQSTVESLSKRI 130

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
           P  + +++K   GLP+S YFSA+KL WL+ NV  V++A++E+R LFGT+D+WL+W+LTG 
Sbjct: 131 PGNN-NFVKSKTGLPLSTYFSAVKLRWLLDNVRKVQKAVEEDRALFGTIDSWLIWSLTGG 189

Query: 333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV---HS- 385
                H TDVTNASRTML NI SL+WD  LC++F +P  ILP +RSSSEIYG +   HS 
Sbjct: 190 ASGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFEIPMKILPNVRSSSEIYGLMKISHSP 249

Query: 386 -----------------NNGLVTTVAYQ-------------------------------- 396
                            +  LV  + +Q                                
Sbjct: 250 KAGALEGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNTGRKCVFSEHGLLTT 309

Query: 397 ----FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPA 452
                G D    YALEGS+A+AGA ++WLRDNL ++ +  E E LA++V T+   YFVPA
Sbjct: 310 VAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKEVGTSYGCYFVPA 369

Query: 453 FGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           F GLYAPYW   ARG+ICG+TQFT K HI  AALEA+CFQTR+IL+
Sbjct: 370 FSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILD 415

Key enzyme in the regulation of glycerol uptake and metabolism.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q9WU65|GLPK2_MOUSE Glycerol kinase 2 OS=Mus musculus GN=Gk2 PE=2 SV=1

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/400 (44%), Positives = 248/400 (62%), Gaps = 55/400 (13%)

Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
           PL+G + +GT + RF + ++ T E V SH ++++   P+EGW EQDP EIL++V   + +
Sbjct: 11  PLVGAVVQGTNSTRFLVFNSKTAELVCSHQVELTQEYPKEGWVEQDPKEILKSVYECIAK 70

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
           A EKL+   +   +I  +G++NQRETTVVWD  TG+PLYNA+VW D R  + V+ +  K 
Sbjct: 71  ACEKLAEVNIDISNIKAIGVSNQRETTVVWDKFTGDPLYNAVVWLDLRTQSTVETLTKKI 130

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
           P  + +++K   GLP+S YFSA+KL W++ N+  +++A++E R +FGT+D+WL+W +TG 
Sbjct: 131 PG-NSNFVKSKTGLPLSTYFSAVKLRWMLDNLRPIQKAVEEGRAMFGTIDSWLIWCMTGG 189

Query: 333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG-------- 381
                H TDVTNA RTML NI SL+WD  LC +F +P +ILP + SSSEIYG        
Sbjct: 190 VNGGIHCTDVTNACRTMLFNIHSLEWDKDLCDFFEIPMSILPNVCSSSEIYGLMTSGALE 249

Query: 382 -------------------------------------------KVHSNNGLVTTVAYQFG 398
                                                       V S +GL+TT+AY+ G
Sbjct: 250 GVPISGCLGDQSAALVGQMCFHEGQAKNTYGTGCFLLCNTGQKCVFSEHGLLTTLAYKLG 309

Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
            +    YALEGS+A+AGA ++WLRDN  ++    E E+LA +V T+   YFVPAF GLYA
Sbjct: 310 KNKPVFYALEGSVAIAGAVIRWLRDNFEIITTSGEVENLAREVGTSYGCYFVPAFSGLYA 369

Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           PYW   ARG+ICG+TQFT K HI  AALEA+CFQTR+IL+
Sbjct: 370 PYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILD 409

Key enzyme in the regulation of glycerol uptake and metabolism.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|P32189|GLPK_HUMAN Glycerol kinase OS=Homo sapiens GN=GK PE=1 SV=3

 Score =  363 bits (931), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 183/406 (45%), Positives = 246/406 (60%), Gaps = 61/406 (15%)

Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
           PL+G +D+GT + RF + ++ T E +  H ++I    P+EGW EQDP EIL +V   +++
Sbjct: 11  PLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILHSVYECIEK 70

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
             EKL    +   +I  +G++NQRETTVVWD  TGEPLYNA+VW D R  + V+ +  + 
Sbjct: 71  TCEKLGQLNIDISNIKAIGVSNQRETTVVWDKITGEPLYNAVVWLDLRTQSTVESLSKRI 130

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
           P  + +++K   GLP+S YFSA+KL WL+ NV  V++A++E R LFGT+D+WL+W+LTG 
Sbjct: 131 PGNN-NFVKSKTGLPLSTYFSAVKLRWLLDNVRKVQKAVEEKRALFGTIDSWLIWSLTGG 189

Query: 333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV---HS- 385
                H TDVTNASRTML NI SL+WD  LC++F +P  ILP +RSSSEIYG +   HS 
Sbjct: 190 VNGGVHCTDVTNASRTMLFNIHSLEWDKQLCEFFGIPMEILPNVRSSSEIYGLMKISHSV 249

Query: 386 -----------------NNGLVTTVAYQ-------------------------------- 396
                            +  LV  + +Q                                
Sbjct: 250 KAGALEGVPISGCLGDQSAALVGQMCFQIGQAKNTYGTGCFLLCNTGHKCVFSDHGLLTT 309

Query: 397 ----FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPA 452
                G D    YALEGS+A+AGA ++WLRDNL ++    E E LA++V T+   YFVPA
Sbjct: 310 VAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVGTSYGCYFVPA 369

Query: 453 FGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           F GLYAPYW   ARG+ICG+TQFT K HI  AALEA+CFQTR+IL+
Sbjct: 370 FSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILD 415

Key enzyme in the regulation of glycerol uptake and metabolism.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q21944|GLPK_CAEEL Probable glycerol kinase OS=Caenorhabditis elegans GN=R11F4.1 PE=3 SV=1

 Score =  343 bits (879), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 166/395 (42%), Positives = 232/395 (58%), Gaps = 53/395 (13%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           L+  ID+GT + RF +  A T E V SH +++  + P  GW E DPME+   V + + + 
Sbjct: 3   LLAAIDQGTSSSRFLVFEADTGELVTSHQIEVRQLFPHGGWVEMDPMELYDTVVSCISKT 62

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
           IEKL   G+S D+I ++G+ NQRET++VWD  TG+PLYNAIVW DTR  ++ D+ +++  
Sbjct: 63  IEKLENLGISADEIKSVGVANQRETSIVWDKETGKPLYNAIVWLDTRTSSLADEAISRTA 122

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
            + KD  +   GLP+ PYFSALKL WL QNV  V++A  +   +FGTVDTWL+W LTG  
Sbjct: 123 SKSKDEFRAKTGLPIHPYFSALKLKWLFQNVPEVKKAYADGNLMFGTVDTWLIWKLTG-- 180

Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK----------- 382
            +VTDV+NASRT+L+++   +W   LC++F +P  ILPEIRSS+E+YG            
Sbjct: 181 AYVTDVSNASRTLLLDLHKRKWSTQLCEFFDLPIEILPEIRSSAEVYGHFDKGPLEGVPL 240

Query: 383 ----------------------------------------VHSNNGLVTTVAYQFGPDAT 402
                                                   + S NGL+TTV +QFG D+ 
Sbjct: 241 SGCLGDQQAAMVGHQCLNAGQTKNTYGTGTFMLCNIGTRPIISKNGLLTTVGFQFGADSP 300

Query: 403 PIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWR 462
            +YALEGS ++ G  V++LRDN   + + +E E L   V  T   YFVP+F GLY PYW 
Sbjct: 301 VVYALEGSGSIGGNVVRFLRDNFKFISDAKEMEGLCRSVEDTSGAYFVPSFTGLYTPYWD 360

Query: 463 KDARGVICGMTQFTTKGHIIRAALEAICFQTRDIL 497
             ARG I G+TQ T + HI  AAL A+ FQ+ +++
Sbjct: 361 STARGTILGLTQVTQREHICLAALRAVAFQSAEMI 395

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|A5CS23|GLPK_CLAM3 Glycerol kinase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=glpK PE=3 SV=1

 Score =  338 bits (866), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 177/399 (44%), Positives = 237/399 (59%), Gaps = 63/399 (15%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           I  ID+GT + R AI+   +   V +  ++   I P+ GW E DPMEI +  +  + +A+
Sbjct: 6   IVAIDQGTTSTR-AIVFDHSGSIVSTGQLEHEQIFPRAGWVEHDPMEIWRNTREVIGQAL 64

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
            K     ++R D+  +GITNQRET VVWD  TG+P+YNAIVW DTR   IVD++ A   D
Sbjct: 65  SKAD---ITRHDVEAVGITNQRETAVVWDRTTGKPVYNAIVWQDTRTQKIVDRLAA---D 118

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT- 333
              +  KP  GLP++ YFS  K+ W+++NV   R   +    +FGT DTW++WNLTG T 
Sbjct: 119 GGVERFKPTVGLPLATYFSGTKIVWILENVDGAREKAEAGELMFGTTDTWVLWNLTGGTD 178

Query: 334 --CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV-------- 383
              HVTDVTNASRT+ M++++LQWD  + K F VP ++LPEI+SSSE+YG+V        
Sbjct: 179 GGVHVTDVTNASRTLFMDLETLQWDDEILKAFDVPRSMLPEIKSSSEVYGQVESSSLLRE 238

Query: 384 --------------------------------------------HSNNGLVTTVAYQFGP 399
                                                       HS NGL+TT+ Y+ G 
Sbjct: 239 VPIAGILGDQQAATFGQAAFDQGESKNTYGTGNFLIFNTGTDIIHSQNGLLTTLGYKLG- 297

Query: 400 DATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAP 459
           D  P YALEGSIAV G+ V+W+RDNL L+ +  E E+LA  V   G VYFVPAF GL+AP
Sbjct: 298 DQEPHYALEGSIAVTGSLVQWMRDNLGLVSSAAEIETLAATVEDNGGVYFVPAFSGLFAP 357

Query: 460 YWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           YWR DARG + G+T++  KGHI RAALEA  FQTR++L+
Sbjct: 358 YWRSDARGALVGLTRYVNKGHIARAALEATAFQTREVLD 396

Key enzyme in the regulation of glycerol uptake and metabolism.

Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) (taxid: 443906)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	500
307184082	606	Putative glycerol kinase 3 [Camponotus f	0.718	0.592	0.593	1e-138
380028540	615	PREDICTED: putative glycerol kinase 3-li	0.716	0.582	0.587	1e-138
322803073	611	hypothetical protein SINV_04309 [Solenop	0.706	0.577	0.593	1e-138
328791677	616	PREDICTED: putative glycerol kinase 3-li	0.706	0.573	0.592	1e-138
307192511	619	Putative glycerol kinase 3 [Harpegnathos	0.718	0.579	0.566	1e-136
242015995	549	glycerol kinase, testis specific, putati	0.678	0.617	0.597	1e-136
340709010	615	PREDICTED: putative glycerol kinase 3-li	0.718	0.583	0.573	1e-136
350419420	615	PREDICTED: putative glycerol kinase 3-li	0.718	0.583	0.576	1e-136
383865082	617	PREDICTED: putative glycerol kinase 3-li	0.692	0.560	0.577	1e-134
156555173	582	PREDICTED: glycerol kinase-like [Nasonia	0.744	0.639	0.542	1e-133

>gi|307184082|gb|EFN70617.1| Putative glycerol kinase 3 [Camponotus floridanus]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/413 (59%), Positives = 295/413 (71%), Gaps = 54/413 (13%)

Query: 140 SSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDP 199
           +++T  NSI+   PL+GVID GTRTVRF + +A    EV SH +DI  IS QEGW EQDP
Sbjct: 48  NTDTMPNSIRKIGPLVGVIDVGTRTVRFVVFNAKHVAEVASHQIDIEHISLQEGWMEQDP 107

Query: 200 MEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDT 259
             IL AV+T +D    KL+  G+  D+IVT+GITNQRETTV+WD  TGEPLYNAIVWSD 
Sbjct: 108 KNILMAVKTCVDNVNHKLNILGMKIDEIVTVGITNQRETTVIWDAITGEPLYNAIVWSDI 167

Query: 260 RADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFG 319
           R D IVDQ++AKFPDQ+K++LKP+CGLPVSPYFSALK+ WL  N+ SV++AI E RC  G
Sbjct: 168 RTDAIVDQIIAKFPDQNKNHLKPLCGLPVSPYFSALKIRWLKDNLPSVKKAIHERRCKVG 227

Query: 320 TVDTWLVWNLTGRT---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSS 376
           T+DTW+VWNLTG      ++TDVTNASRTMLMNI++L WDP LC+YF +P  +LPEIRSS
Sbjct: 228 TMDTWIVWNLTGGIDGGLYITDVTNASRTMLMNIETLSWDPTLCRYFDIPMQMLPEIRSS 287

Query: 377 SEIYGK---------------------------------------------------VHS 385
           SEIYGK                                                   V+S
Sbjct: 288 SEIYGKISIPPLSGIPISGILGNQQAALVGQNCLKKGQAKNTYRSGCFLLCNTGHTRVYS 347

Query: 386 NNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTG 445
           ++GLVTTVAYQ GP + P+YALEGS+AVAGAA+KWLRDN+ L+ +V E+E LA+ V  TG
Sbjct: 348 SHGLVTTVAYQLGPKSPPVYALEGSVAVAGAAIKWLRDNMKLIKDVHESEHLAQSVFNTG 407

Query: 446 DVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           DVYFVPAF GLYAPYWRKDARG+ICG+T FTTK HIIRA+LEA+CFQTRDILE
Sbjct: 408 DVYFVPAFTGLYAPYWRKDARGIICGLTAFTTKQHIIRASLEAVCFQTRDILE 460

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028540|ref|XP_003697956.1| PREDICTED: putative glycerol kinase 3-like [Apis florea]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/412 (58%), Positives = 294/412 (71%), Gaps = 54/412 (13%)

Query: 141 SNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPM 200
            +T  +S++   PLIGVID GTRTVRF + +A    EV SH +DI  ISPQEGW EQDP 
Sbjct: 60  KDTMPSSVKKPGPLIGVIDVGTRTVRFVVFNAKHVAEVASHQIDIEQISPQEGWMEQDPK 119

Query: 201 EILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTR 260
           EIL AV+  +   I KL   GL  D+IVT+GITNQRETTV WD  TGEPLYNAIVWSD R
Sbjct: 120 EILFAVKACIKDVIRKLDVLGLKMDEIVTIGITNQRETTVAWDAMTGEPLYNAIVWSDIR 179

Query: 261 ADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGT 320
            ++IVDQ++AKFPDQ K+++KP+CGLPVSPYFSALK+ W+  NV +VR+A+++ RC  GT
Sbjct: 180 TNSIVDQIIAKFPDQSKNHIKPLCGLPVSPYFSALKIRWMKDNVPTVRKAMRDRRCKVGT 239

Query: 321 VDTWLVWNLTGRT---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSS 377
           +DTW+VWNLTG      ++TDVTNASRTMLMNI++L WDP LC+YF +P  ILPEIRSS+
Sbjct: 240 MDTWIVWNLTGGKDGGLYITDVTNASRTMLMNIETLSWDPTLCRYFDIPMQILPEIRSSA 299

Query: 378 EIYGK---------------------------------------------------VHSN 386
           EIYGK                                                   V+S+
Sbjct: 300 EIYGKIAIGPLKGITISGILGNQQSALVGQNCLKKGQAKNTYRSGCFLLCNTGTTRVYSS 359

Query: 387 NGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGD 446
           +GLVTTVAYQ GP ++ +YALEGSIAVAGAA+KWLRDN+ L+ +V E+E LA+ V +TGD
Sbjct: 360 HGLVTTVAYQLGPKSSAVYALEGSIAVAGAAIKWLRDNMKLIKDVHESEHLAQSVFSTGD 419

Query: 447 VYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           VYFVPAF GLYAPYWRKDARG+ICG+T FTTK HIIRA+LEA+CFQTRDILE
Sbjct: 420 VYFVPAFTGLYAPYWRKDARGIICGLTAFTTKQHIIRASLEAVCFQTRDILE 471

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322803073|gb|EFZ23161.1| hypothetical protein SINV_04309 [Solenopsis invicta]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/406 (59%), Positives = 290/406 (71%), Gaps = 53/406 (13%)

Query: 146 NSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQA 205
           N+++   PL+GV+D GTRTVRF + +A    EV SH +DI  ISPQEGW EQDP EIL A
Sbjct: 67  NTVKKTGPLVGVVDVGTRTVRFVVFNAKHVAEVASHQIDIEQISPQEGWVEQDPKEILFA 126

Query: 206 VQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIV 265
           V+  +   I KL   G+  D+IVT+GITNQRETTVVWD  TG+PLYNAIVWSD R D  V
Sbjct: 127 VKACIKDVIRKLDVLGMKIDEIVTVGITNQRETTVVWDAITGDPLYNAIVWSDIRTDATV 186

Query: 266 DQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWL 325
           DQV+AKFPDQ K++LKP+CGLPVSPYFSALK+ WL  +V +VR+AI++ RC  GT+DTW+
Sbjct: 187 DQVIAKFPDQSKNHLKPLCGLPVSPYFSALKIRWLKDHVRAVRKAIRDRRCKVGTMDTWV 246

Query: 326 VWNLTGRT---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK 382
           +WNLTG      ++TDVTNASRTMLMNI++L WDP LC+YF +P  +LPEIRSSSEIYGK
Sbjct: 247 IWNLTGGKDGGLYITDVTNASRTMLMNIETLSWDPTLCRYFDIPMQMLPEIRSSSEIYGK 306

Query: 383 --------------------------------------------------VHSNNGLVTT 392
                                                             V+S++GLVTT
Sbjct: 307 ILIGPLSGIPISGVRNQQSALVGQNCLKKGQAKNTYRSGCFLLCNTGYTRVYSSHGLVTT 366

Query: 393 VAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPA 452
           VAYQ GP   P+YALEGSIAVAGAA+KWLRDN+ L+ +V E+E LA+ V +TGDVYFVPA
Sbjct: 367 VAYQLGPKNPPVYALEGSIAVAGAAIKWLRDNMKLIKDVHESEHLAQSVFSTGDVYFVPA 426

Query: 453 FGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           F GLYAPYWRKDARG+ICG+T FTTK HIIRA+LEA+CFQTRDILE
Sbjct: 427 FTGLYAPYWRKDARGIICGLTAFTTKQHIIRASLEAVCFQTRDILE 472

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791677|ref|XP_392782.4| PREDICTED: putative glycerol kinase 3-like [Apis mellifera]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/407 (59%), Positives = 291/407 (71%), Gaps = 54/407 (13%)

Query: 146 NSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQA 205
           +SI+   PLIGVID GTRTVRF + +A    EV SH +DI  ISPQEGW EQDP EIL A
Sbjct: 64  SSIKKPGPLIGVIDVGTRTVRFVVFNAKHVAEVASHQIDIEQISPQEGWMEQDPKEILFA 123

Query: 206 VQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIV 265
           V+  +   I KL   GL  D+IVT+GITNQRETTV WD  TGEPLYNAIVWSD R  +IV
Sbjct: 124 VKACIKDVIRKLDVLGLKMDEIVTIGITNQRETTVAWDAMTGEPLYNAIVWSDIRTSSIV 183

Query: 266 DQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWL 325
           DQ++AKFPDQ K+++KP+CGLPVSPYFSALK+ W+  NV +VR+A+++ RC  GT+DTW+
Sbjct: 184 DQIIAKFPDQSKNHIKPLCGLPVSPYFSALKIRWMKDNVPTVRKAMRDRRCKVGTMDTWI 243

Query: 326 VWNLTGRT---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK 382
           VWNLTG      ++TDVTNASRTMLMNI++L WDP LC+YF +P  +LPEIRSS+EIYGK
Sbjct: 244 VWNLTGGKDGGLYITDVTNASRTMLMNIETLSWDPTLCRYFDIPMQMLPEIRSSAEIYGK 303

Query: 383 ---------------------------------------------------VHSNNGLVT 391
                                                              V+S++GLVT
Sbjct: 304 IAIGPLKGITISGILGNQQSALVGQNCLKKGQAKNTYRSGCFLLCNTGTTRVYSSHGLVT 363

Query: 392 TVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVP 451
           TVAYQ GP ++ +YALEGSIAVAGAA+KWLRDN+ L+ +V E+E LA+ V +TGDVYFVP
Sbjct: 364 TVAYQLGPKSSAVYALEGSIAVAGAAIKWLRDNMKLIKDVHESEHLAQSVFSTGDVYFVP 423

Query: 452 AFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           AF GLYAPYWRKDARG+ICG+T FTTK HIIRA+LEA+CFQTRDILE
Sbjct: 424 AFTGLYAPYWRKDARGIICGLTAFTTKQHIIRASLEAVCFQTRDILE 470

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192511|gb|EFN75699.1| Putative glycerol kinase 3 [Harpegnathos saltator]

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/413 (56%), Positives = 298/413 (72%), Gaps = 54/413 (13%)

Query: 140 SSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDP 199
           +++T +++++   P +GVID GTRTVRF + +A    E+ SH +DI  I+P+EGW EQDP
Sbjct: 65  NADTMSSTVKKTGPSVGVIDVGTRTVRFVVFNAKHVAEIASHQIDIEQINPKEGWMEQDP 124

Query: 200 MEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDT 259
            EIL AV+T +   I K    G+  D+IVT+GITNQRETT+ WD +TG+PLYNAIVWSD 
Sbjct: 125 KEILFAVKTCVKEVIRKFDVLGMKIDEIVTVGITNQRETTIAWDASTGDPLYNAIVWSDI 184

Query: 260 RADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFG 319
           R D++VDQ++AKFPD+ K++LKP+CGLPVSPYFSALK+ WL ++V +V++AI+E RC  G
Sbjct: 185 RTDSMVDQIIAKFPDKSKNHLKPLCGLPVSPYFSALKIRWLKEHVPAVKKAIREKRCKVG 244

Query: 320 TVDTWLVWNLTGRT---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSS 376
           TVDTW+VWNLTG      ++TDVTNASRTMLMNI++L WDP LC+YF +P  +LPEIRSS
Sbjct: 245 TVDTWIVWNLTGGKDGGLYITDVTNASRTMLMNIETLSWDPTLCRYFDIPMQMLPEIRSS 304

Query: 377 SEIYGK---------------------------------------------------VHS 385
           SEIYGK                                                   V+S
Sbjct: 305 SEIYGKVSTGPLADIPISGILGNQQSALVGQNCLKKGQAKNTYRSGCFLLCNTGHTRVYS 364

Query: 386 NNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTG 445
           ++GLVTTVAYQ GP++  +YALEGS+AVAGAA+KWLRDN+ L+ +V E+E LA+ V +TG
Sbjct: 365 SHGLVTTVAYQLGPNSPAVYALEGSVAVAGAAIKWLRDNMKLIKDVHESEHLAQSVFSTG 424

Query: 446 DVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           DVYFVPAF GLYAPYWRKDARG+ICG+T FTTK HIIRA+LEA+CFQTRDILE
Sbjct: 425 DVYFVPAFTGLYAPYWRKDARGIICGLTAFTTKQHIIRASLEAVCFQTRDILE 477

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015995|ref|XP_002428624.1| glycerol kinase, testis specific, putative [Pediculus humanus corporis] gi|212513287|gb|EEB15886.1| glycerol kinase, testis specific, putative [Pediculus humanus corporis]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/398 (59%), Positives = 288/398 (72%), Gaps = 59/398 (14%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           IGVIDEGT TVRF +  A+T++EV SH +DI T +P+EGW EQDP+EIL AV+  +  A+
Sbjct: 4   IGVIDEGTSTVRFILFDAVTRKEVNSHEIDIKTYTPKEGWVEQDPLEILGAVKLCIT-AV 62

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
            K     +++DDI T+GITNQRETTV+WD +TG P+YNAIVWSD R D IVDQVLAK PD
Sbjct: 63  LKF----VNKDDIATIGITNQRETTVLWDCSTGLPIYNAIVWSDIRTDGIVDQVLAKLPD 118

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTG--- 331
             K+YLKPICGLPV+PYFSA K+ WLI NV  V++A+KE +CLFGT+DTWL+WNLTG   
Sbjct: 119 NSKNYLKPICGLPVNPYFSAFKIQWLIDNVPLVKKAVKEKKCLFGTIDTWLLWNLTGGPV 178

Query: 332 RTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG---------- 381
              H TDVTNASRTMLMN+D+L WDP+L KYF +P  +LP+IRSSSEIYG          
Sbjct: 179 GGIHATDVTNASRTMLMNLDTLNWDPILLKYFKIPSRMLPDIRSSSEIYGYIKEKLLEGI 238

Query: 382 -----------------------------------------KVHSNNGLVTTVAYQFGPD 400
                                                    +V+SN+GLVTTVAY+ G  
Sbjct: 239 PVSGILGNQQAALVGLNCLKRGMTKNTYRSGCFLLCNTGFQRVNSNHGLVTTVAYKMGKS 298

Query: 401 ATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPY 460
           + P+YALEGS+AVAG A+KWLRD LNL+ N  ETE+LAE+VMTTGDVYFVPAF GL+APY
Sbjct: 299 SPPVYALEGSVAVAGTAIKWLRDKLNLLKNYEETETLAEEVMTTGDVYFVPAFKGLFAPY 358

Query: 461 WRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           WRKDARG++CG+T FTTKGHIIRA LEA+CFQTRD+LE
Sbjct: 359 WRKDARGILCGLTHFTTKGHIIRATLEAVCFQTRDVLE 396

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709010|ref|XP_003393109.1| PREDICTED: putative glycerol kinase 3-like isoform 1 [Bombus terrestris] gi|340709012|ref|XP_003393110.1| PREDICTED: putative glycerol kinase 3-like isoform 2 [Bombus terrestris] gi|340709014|ref|XP_003393111.1| PREDICTED: putative glycerol kinase 3-like isoform 3 [Bombus terrestris]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/413 (57%), Positives = 292/413 (70%), Gaps = 54/413 (13%)

Query: 140 SSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDP 199
             +T  N  +   PLIGVID GTRTVRF + +A    EV SH +DI  ISPQEGW EQDP
Sbjct: 57  KKDTMQNLTKKSGPLIGVIDVGTRTVRFVVFNAKHIAEVASHQIDIEQISPQEGWMEQDP 116

Query: 200 MEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDT 259
            EIL AV+T +   + KL   GL  ++I+T+GITNQRETT+ WD  TGEPLYNAIVWSD 
Sbjct: 117 REILFAVKTCIKDVVRKLDVLGLKINEIITIGITNQRETTLAWDSTTGEPLYNAIVWSDI 176

Query: 260 RADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFG 319
           R + IVDQ++AKFPDQ K+++KP+CGLPVSPYFSALK+ W+  NV +VR+A+++ RC  G
Sbjct: 177 RTNPIVDQIIAKFPDQSKNHIKPLCGLPVSPYFSALKIRWMKDNVPTVRKAMRDKRCKVG 236

Query: 320 TVDTWLVWNLTGRT---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSS 376
           T+DTW+VWNLTG      ++TDVTNASRTMLMNI++L WDP LC+YF +P  ILPEI+SS
Sbjct: 237 TMDTWIVWNLTGGKDGGLYITDVTNASRTMLMNIETLSWDPTLCRYFDIPMQILPEIKSS 296

Query: 377 SEIYG---------------------------------------------------KVHS 385
           +EIYG                                                   +VHS
Sbjct: 297 AEIYGSIAIGPLKGITISGILGNQQSALVGQNCLKKGQAKNTYRGGCFLLCNTGTTRVHS 356

Query: 386 NNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTG 445
           ++GLVTTVAYQ GP++  +YALEGS+AVAGAA+KWLRDN+ L+ +V E+E LA+ V +TG
Sbjct: 357 SHGLVTTVAYQLGPNSPAVYALEGSVAVAGAAIKWLRDNMKLIKDVHESEHLAQSVFSTG 416

Query: 446 DVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           DVYFVPAF GLYAPYWRKDARG+ICG+T FTTK HIIRA+LEA+CFQTRDILE
Sbjct: 417 DVYFVPAFTGLYAPYWRKDARGIICGLTAFTTKQHIIRASLEAVCFQTRDILE 469

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419420|ref|XP_003492175.1| PREDICTED: putative glycerol kinase 3-like isoform 1 [Bombus impatiens] gi|350419422|ref|XP_003492176.1| PREDICTED: putative glycerol kinase 3-like isoform 2 [Bombus impatiens]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/413 (57%), Positives = 292/413 (70%), Gaps = 54/413 (13%)

Query: 140 SSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDP 199
             +T  N  +   PLIGVID GTRTVRF + +A    EV SH +DI  ISPQEGW EQDP
Sbjct: 57  KKDTMPNLTKKSGPLIGVIDVGTRTVRFVVFNAKHIAEVASHQIDIEQISPQEGWMEQDP 116

Query: 200 MEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDT 259
            EIL AV+T +   + KL   GL  ++I+T+GITNQRETT+ WD  TGEPLYNAIVWSD 
Sbjct: 117 REILFAVKTCIKDVVRKLDVLGLKINEIITIGITNQRETTLAWDSTTGEPLYNAIVWSDI 176

Query: 260 RADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFG 319
           R + IVDQ++AKFPDQ K+++KP+CGLPVSPYFSALK+ W+  NV +VR+A+++ RC  G
Sbjct: 177 RTNPIVDQIIAKFPDQSKNHIKPLCGLPVSPYFSALKIRWMKDNVPTVRKAMRDKRCKVG 236

Query: 320 TVDTWLVWNLTGRT---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSS 376
           T+DTW+VWNLTG      ++TDVTNASRTMLMNI++L WDP LC+YF +P  ILPEI+SS
Sbjct: 237 TMDTWIVWNLTGGKDGGLYITDVTNASRTMLMNIETLSWDPTLCRYFDIPMQILPEIKSS 296

Query: 377 SEIYG---------------------------------------------------KVHS 385
           +EIYG                                                   +VHS
Sbjct: 297 AEIYGSIAIGPLKGITISGILGNQQSALVGQNCLKKGQAKNTYRGGCFLLCNTGTTRVHS 356

Query: 386 NNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTG 445
           ++GLVTTVAYQ GP++  IYALEGS+AVAGAA+KWLRDN+ L+ +V E+E LA+ V +TG
Sbjct: 357 SHGLVTTVAYQLGPNSPAIYALEGSVAVAGAAIKWLRDNMKLIKDVHESEHLAQSVFSTG 416

Query: 446 DVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           DVYFVPAF GLYAPYWRKDARG+ICG+T FTTK HIIRA+LEA+CFQTRDILE
Sbjct: 417 DVYFVPAFTGLYAPYWRKDARGIICGLTAFTTKQHIIRASLEAVCFQTRDILE 469

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865082|ref|XP_003708004.1| PREDICTED: putative glycerol kinase 3-like [Megachile rotundata]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/400 (57%), Positives = 285/400 (71%), Gaps = 54/400 (13%)

Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
           PLIGVID GTRTVRF + +A    EV SH +D+  I PQEGW EQDP EIL AV+  +  
Sbjct: 72  PLIGVIDVGTRTVRFVVFTAKHVAEVASHQIDVEQICPQEGWVEQDPKEILFAVKACIKD 131

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
            I +    GL  D+IVT+GITNQRETT+VWD  TGEPLYNAIVWSD R  +IVD+++AKF
Sbjct: 132 VIRRFDILGLKVDEIVTIGITNQRETTIVWDATTGEPLYNAIVWSDVRTSSIVDKIIAKF 191

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
           PDQ K+++KP+CGLPV+PYFSALK+ W+I NV +VR+A+++ +C  GT+DTW+VWNLTG 
Sbjct: 192 PDQSKNHIKPLCGLPVNPYFSALKIRWIIDNVPTVRKAMRDKQCKVGTMDTWIVWNLTGG 251

Query: 333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG-------- 381
                ++TDVTNASRTMLMNI++L WDP LC+YF +P  +LPEIRSS+EIYG        
Sbjct: 252 KDGGLYITDVTNASRTMLMNIETLSWDPTLCRYFDIPMQMLPEIRSSAEIYGHIKIDPLK 311

Query: 382 -------------------------------------------KVHSNNGLVTTVAYQFG 398
                                                      +V+S++GLVTTVAYQ G
Sbjct: 312 GIPISGILGNQQSALVGQNCLKKGQAKNTYRSGCFLLCNTGTTRVYSSHGLVTTVAYQLG 371

Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
           P +  +YALEGS+AVAGAA+KWLRDN+ L+ +V + E LAE V +TGDVYFVPAF GLYA
Sbjct: 372 PTSPAVYALEGSVAVAGAAIKWLRDNMKLIKDVSDCEHLAESVFSTGDVYFVPAFKGLYA 431

Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           PYWRKDARG+ICG+T FTTK HIIRA+LEA+CFQTRDILE
Sbjct: 432 PYWRKDARGIICGITAFTTKQHIIRASLEAVCFQTRDILE 471

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156555173|ref|XP_001603371.1| PREDICTED: glycerol kinase-like [Nasonia vitripennis]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/448 (54%), Positives = 298/448 (66%), Gaps = 76/448 (16%)

Query: 105 NQRETTVVWDLNTGEPLYNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRT 164
           N++E T  +D  T    YN+ D MP+L    P +P             P IGVID GTRT
Sbjct: 11  NKKEKTA-YDYYT----YNSTD-MPTL----PSKPG------------PFIGVIDVGTRT 48

Query: 165 VRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR 224
           VRF I +A    EV SH +DI  ++PQEGW EQDP EI  A+ T +   + K+   GL  
Sbjct: 49  VRFVIFNAKHVTEVHSHQIDIEQLTPQEGWVEQDPKEIQSAISTCISNVLRKMEEKGLDA 108

Query: 225 DDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPIC 284
             IVT+GI N RETT+VWD  TGEPLYNAI+WSD R D +VDQ++A+FPD +K++L+PIC
Sbjct: 109 SSIVTIGICNSRETTLVWDSKTGEPLYNAILWSDIRTDKLVDQIIARFPDNNKNHLRPIC 168

Query: 285 GLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT---CHVTDVTN 341
           GLPVS YFSALK+ WL+ NV  VR+AI+E RC+FGT+DTWLVWN TG      ++TDVTN
Sbjct: 169 GLPVSSYFSALKIRWLMDNVPGVRKAIRERRCMFGTLDTWLVWNFTGGKDGGLYITDVTN 228

Query: 342 ASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG-------------------- 381
           ASRTMLMNI+++ WD  LC+YF +P  ILP+IRSSSEIYG                    
Sbjct: 229 ASRTMLMNIETVTWDITLCRYFNIPMHILPKIRSSSEIYGNIKVGQLKGIPISGILGNQQ 288

Query: 382 -------------------------------KVHSNNGLVTTVAYQFGPDATPIYALEGS 410
                                          +V S++GLVTTVAYQ GP++  +YALEGS
Sbjct: 289 AALVGQNCLKQGQAKNTYRSGCFLLCNTGTQRVFSSHGLVTTVAYQLGPNSPVVYALEGS 348

Query: 411 IAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVIC 470
           IAVAG A+KWLRDN+ +M +V E+E LA+KV  TGDVYFVPAF GLYAPYWRKDARGVIC
Sbjct: 349 IAVAGLAIKWLRDNMKMMKDVHESEHLAQKVFNTGDVYFVPAFSGLYAPYWRKDARGVIC 408

Query: 471 GMTQFTTKGHIIRAALEAICFQTRDILE 498
           G+T F+TK HIIRA+LEA+CFQTRDILE
Sbjct: 409 GLTAFSTKDHIIRASLEAVCFQTRDILE 436

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	500
FB|FBgn0035266	576	Gk "Glycerol kinase" [Drosophi	0.46	0.399	0.521	5.7e-107
FB|FBgn0025592	538	Gyk "Glycerol kinase" [Drosoph	0.462	0.429	0.529	2.8e-105
UNIPROTKB|F1NRQ6	552	GK "Uncharacterized protein" [	0.478	0.432	0.512	7.4e-103
ZFIN|ZDB-GENE-080204-72	534	zgc:172295 "zgc:172295" [Danio	0.466	0.436	0.525	2.5e-102
UNIPROTKB|D4A354	559	Gk "Glycerol kinase" [Rattus n	0.472	0.422	0.495	1.1e-101
MGI|MGI:106594	559	Gyk "glycerol kinase" [Mus mus	0.472	0.422	0.495	1.4e-101
UNIPROTKB|F6UV44	559	GK "Uncharacterized protein" [	0.472	0.422	0.491	4.6e-101
UNIPROTKB|Q0IID9	559	GK "Glycerol kinase" [Bos taur	0.456	0.407	0.504	5.9e-101
RGD|70893	524	Gk "glycerol kinase" [Rattus n	0.456	0.435	0.508	7.5e-101
UNIPROTKB|Q63060	524	Gk "Glycerol kinase" [Rattus n	0.456	0.435	0.508	7.5e-101

FB|FBgn0035266 Gk "Glycerol kinase" [Drosophila melanogaster (taxid:7227)]

 Score = 675 (242.7 bits), Expect = 5.7e-107, Sum P(2) = 5.7e-107
 Identities = 121/232 (52%), Positives = 169/232 (72%)

Query:   154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
             L+GVIDEGT+T+ F+I +    +E+ +H +++S I+PQ+GW EQDP+E++ ++    + A
Sbjct:    32 LVGVIDEGTKTIGFSIYTTPDFKEIAAHRVELSVITPQDGWYEQDPLEMMASINKCAEEA 91

Query:   214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
             I++L   G S  DIVT+GITNQRETT+VWD  TG+PLYNA++W D R    V+Q++AK  
Sbjct:    92 IKQLPEQGFSASDIVTVGITNQRETTIVWDAVTGKPLYNALLWKDIRTSTTVEQIVAKV- 150

Query:   274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
              QD ++ +   GLP+S YFSALK+ WL  NV  VR+AI+E RC  GTVD+W+VWNLT   
Sbjct:   151 -QDPNHFRSSTGLPISTYFSALKIRWLRDNVPEVRQAIRERRCKAGTVDSWIVWNLTNGA 209

Query:   334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS 385
              H+TDVTNASRT+LMN+++  WDP+L K F +   +LP I S SEI+GK+ S
Sbjct:   210 LHITDVTNASRTLLMNLETQAWDPVLLKTFGIREEMLPTIHSCSEIFGKITS 261

GO:0005575 "cellular_component" evidence=ND

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0046167 "glycerol-3-phosphate biosynthetic process" evidence=ISS;IMP

GO:0004370 "glycerol kinase activity" evidence=ISS;IMP

FB|FBgn0025592 Gyk "Glycerol kinase" [Drosophila melanogaster (taxid:7227)]

 Score = 657 (236.3 bits), Expect = 2.8e-105, Sum P(2) = 2.8e-105
 Identities = 125/236 (52%), Positives = 168/236 (71%)

Query:   153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
             P +G IDEGT + RF I  A T E V  H +++ +I  +EGW EQDPM I+  V   +  
Sbjct:    18 PFVGAIDEGTTSARFIIFRAGTDEIVCFHQIEVESIFQKEGWCEQDPMAIVNTVNECITG 77

Query:   213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
             A +KL A G   ++I+T+GITNQRE+TVVWD N+G+PL NAI+W D R  + V+++L   
Sbjct:    78 ACKKLVAVGGKVEEIITIGITNQRESTVVWDRNSGQPLVNAIIWLDNRTTSTVEELLETI 137

Query:   273 PDQDKD--YLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLT 330
             P+  ++  YL+P+CGLP+SPYFS +KL WL  NV  V +A+++   +FGT+DTWL++NLT
Sbjct:   138 PNNARNINYLRPLCGLPLSPYFSGVKLRWLRDNVPVVSQAMEKGTAMFGTIDTWLMYNLT 197

Query:   331 G-RTC--HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV 383
             G + C  H TDVTNASRTMLMNI++LQWD  L K+F +P TILPEI SSSE YG +
Sbjct:   198 GGKDCGVHKTDVTNASRTMLMNIETLQWDANLLKFFGLPKTILPEICSSSEFYGSI 253

GO:0005575 "cellular_component" evidence=ND

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=ISS;IMP

GO:0046167 "glycerol-3-phosphate biosynthetic process" evidence=ISS;IMP

UNIPROTKB|F1NRQ6 GK "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 658 (236.7 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
 Identities = 125/244 (51%), Positives = 168/244 (68%)

Query:   153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
             PL+G ID+GT + RF + +A T E +  H ++I    P+EGW EQDP EIL++V   ++R
Sbjct:    11 PLVGSIDQGTSSSRFLVFNAKTAELLSHHQVEIQQKFPKEGWVEQDPKEILRSVHECVER 70

Query:   213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
               EKL    +   +I  +G++NQRETTVVWD  TGEPLYNAIVW D R  + V+++L + 
Sbjct:    71 TCEKLQQLNIDITNIKAIGVSNQRETTVVWDKTTGEPLYNAIVWLDLRTQSTVERLLKRI 130

Query:   273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
             P  +K + K   GLP+S YFSA+KL WL+ NV  +R+A+ + R +FGT+D+WL+W LTG 
Sbjct:   131 PGNNKSFFKFRTGLPLSTYFSAVKLRWLLDNVEEIRQAVDDGRAMFGTIDSWLIWCLTGG 190

Query:   333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGL 389
                  H TDVTNASRTML NI SL WDP LC++F +P  ILP++RSSSEIYG + S  G 
Sbjct:   191 KNGGVHCTDVTNASRTMLFNIHSLDWDPELCQFFDIPMEILPKVRSSSEIYGLMKS--GA 248

Query:   390 VTTV 393
             +T V
Sbjct:   249 LTGV 252

GO:0004370 "glycerol kinase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

ZFIN|ZDB-GENE-080204-72 zgc:172295 "zgc:172295" [Danio rerio (taxid:7955)]

 Score = 660 (237.4 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
 Identities = 124/236 (52%), Positives = 164/236 (69%)

Query:   153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
             PL+  ID+GT + RF + +A T E +  H ++I    P+EGW E+DP EILQ+V   MDR
Sbjct:    16 PLVAAIDQGTSSTRFLVFNAKTAELLSHHQVEIKQSFPKEGWVEEDPKEILQSVYECMDR 75

Query:   213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
               EKL+   +   +I  +G+TNQRETT+VWD  TGEPLYNAIVW D R  + V++++ K 
Sbjct:    76 TCEKLTQLNIDVSNIKAVGVTNQRETTLVWDKQTGEPLYNAIVWLDLRTQSTVERLINKT 135

Query:   273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
             P ++K++LK   GLP+S YFSA+KL WL+ NV  V  A+  +R +FGTVD+WL+W LTG 
Sbjct:   136 PGKNKNHLKDKTGLPISTYFSAVKLRWLMDNVEKVHEAVLSHRAMFGTVDSWLIWCLTGG 195

Query:   333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS 385
                  H TDVTNASRTML NI ++ WDP LC YF +P  ILP++RSSSEIYG + S
Sbjct:   196 KNGGVHCTDVTNASRTMLFNIHTMDWDPELCIYFDIPMGILPKVRSSSEIYGLMKS 251

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

UNIPROTKB|D4A354 Gk "Glycerol kinase" [Rattus norvegicus (taxid:10116)]

 Score = 646 (232.5 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
 Identities = 119/240 (49%), Positives = 167/240 (69%)

Query:   153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
             PL+G +D+GT + RF + ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++
Sbjct:    11 PLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEK 70

Query:   213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
               EKL    +   +I  +G++NQRETTVVWD  TGEPLYNA+VW D R  + V+++  + 
Sbjct:    71 TCEKLGQLNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDLRTQSTVEKLSKRI 130

Query:   273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
             P  + +++K   GLP+S YFSA+KL WL+ NV  V+ A++ENR LFGT+D+WL+W+LTG 
Sbjct:   131 PGNN-NFVKSKTGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGTIDSWLIWSLTGG 189

Query:   333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGL 389
                  H TDVTNASRTML NI SL+WD  LC++F +P  ILP +RSSSEIYG +  ++ L
Sbjct:   190 INGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEILPNVRSSSEIYGLMKISHSL 249

GO:0004370 "glycerol kinase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

MGI|MGI:106594 Gyk "glycerol kinase" [Mus musculus (taxid:10090)]

 Score = 645 (232.1 bits), Expect = 1.4e-101, Sum P(2) = 1.4e-101
 Identities = 119/240 (49%), Positives = 166/240 (69%)

Query:   153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
             PL+G +D+GT + RF + ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++
Sbjct:    11 PLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEK 70

Query:   213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
               EKL    +   +I  +G++NQRETTVVWD  TGEPLYNA+VW D R  + V+ +  + 
Sbjct:    71 TCEKLGQLNIDISNIKAIGVSNQRETTVVWDKVTGEPLYNAVVWLDLRTQSTVENLSKRI 130

Query:   273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
             P  + +++K   GLP+S YFSA+KL WL+ NV  V+ A++ENR LFGT+D+WL+W+LTG 
Sbjct:   131 PGNN-NFVKSKTGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGTIDSWLIWSLTGG 189

Query:   333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGL 389
                  H TDVTNASRTML NI SL+WD  LC++F +P  ILP +RSSSEIYG +  ++ L
Sbjct:   190 IHGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEILPNVRSSSEIYGLMKISHSL 249

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006071 "glycerol metabolic process" evidence=ISO;IMP

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0042393 "histone binding" evidence=ISO

GO:0045471 "response to ethanol" evidence=ISO

GO:0046167 "glycerol-3-phosphate biosynthetic process" evidence=ISO

UNIPROTKB|F6UV44 GK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 641 (230.7 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
 Identities = 118/240 (49%), Positives = 167/240 (69%)

Query:   153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
             PL+G +D+GT + RF + ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++
Sbjct:    11 PLVGAVDQGTSSTRFLVFNSRTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEK 70

Query:   213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
               EKL    +   +I  +G++NQRETTVVWD  TGEPLYNA+VW D R  + V+ +  + 
Sbjct:    71 TCEKLGQLNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDLRTQSTVENLSKRI 130

Query:   273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
             P  + +++K   GLP+S YFSA+KL WL+ NV  V++A++E+R LFGT+D+WL+W+LTG 
Sbjct:   131 PGNN-NFVKSKTGLPLSTYFSAVKLRWLLDNVRKVQKAVEEDRALFGTIDSWLIWSLTGG 189

Query:   333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGL 389
                  H TDVTNASRTML NI SL+WD  LC++F +P  ILP +RSSSEIYG +  ++ L
Sbjct:   190 ANGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFEIPMKILPNVRSSSEIYGLMKISHSL 249

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=IEA

UNIPROTKB|Q0IID9 GK "Glycerol kinase" [Bos taurus (taxid:9913)]

 Score = 639 (230.0 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
 Identities = 117/232 (50%), Positives = 163/232 (70%)

Query:   153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
             PL+G +D+GT + RF + ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++
Sbjct:    11 PLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEK 70

Query:   213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
               EKL    +   +I  +G++NQRETTVVWD  TGEPLYNA+VW D R  + V+ +  + 
Sbjct:    71 TCEKLGQLNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDLRTQSTVESLSKRI 130

Query:   273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
             P  + +++K   GLP+S YFSA+KL WL+ NV  V++A++E+R LFGT+D+WL+W+LTG 
Sbjct:   131 PGNN-NFVKSKTGLPLSTYFSAVKLRWLLDNVRKVQKAVEEDRALFGTIDSWLIWSLTGG 189

Query:   333 TC---HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG 381
                  H TDVTNASRTML NI SL+WD  LC++F +P  ILP +RSSSEIYG
Sbjct:   190 ASGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFEIPMKILPNVRSSSEIYG 241

GO:0019563 "glycerol catabolic process" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

RGD|70893 Gk "glycerol kinase" [Rattus norvegicus (taxid:10116)]

 Score = 644 (231.8 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
 Identities = 118/232 (50%), Positives = 163/232 (70%)

Query:   153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
             PL+G +D+GT + RF + ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++
Sbjct:    11 PLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEK 70

Query:   213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
               EKL    +   +I  +G++NQRETTVVWD  TGEPLYNA+VW D R  + V+++  + 
Sbjct:    71 TCEKLGQLNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDLRTQSTVEKLSKRI 130

Query:   273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
             P  + +++K   GLP+S YFSA+KL WL+ NV  V+ A++ENR LFGT+D+WL+W+LTG 
Sbjct:   131 PGNN-NFVKSKTGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGTIDSWLIWSLTGG 189

Query:   333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG 381
                  H TDVTNASRTML NI SL+WD  LC++F +P  ILP +RSSSEIYG
Sbjct:   190 INGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEILPNVRSSSEIYG 241

GO:0004370 "glycerol kinase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006071 "glycerol metabolic process" evidence=IEA;ISO

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=ISO

GO:0009409 "response to cold" evidence=IEP

GO:0010033 "response to organic substance" evidence=IEP

GO:0016310 "phosphorylation" evidence=ISO

GO:0019563 "glycerol catabolic process" evidence=IEA

GO:0042393 "histone binding" evidence=IDA

GO:0042493 "response to drug" evidence=IEP

GO:0045471 "response to ethanol" evidence=IDA

GO:0046167 "glycerol-3-phosphate biosynthetic process" evidence=ISO

UNIPROTKB|Q63060 Gk "Glycerol kinase" [Rattus norvegicus (taxid:10116)]

 Score = 644 (231.8 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
 Identities = 118/232 (50%), Positives = 163/232 (70%)

Query:   153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
             PL+G +D+GT + RF + ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++
Sbjct:    11 PLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEK 70

Query:   213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
               EKL    +   +I  +G++NQRETTVVWD  TGEPLYNA+VW D R  + V+++  + 
Sbjct:    71 TCEKLGQLNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDLRTQSTVEKLSKRI 130

Query:   273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
             P  + +++K   GLP+S YFSA+KL WL+ NV  V+ A++ENR LFGT+D+WL+W+LTG 
Sbjct:   131 PGNN-NFVKSKTGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGTIDSWLIWSLTGG 189

Query:   333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG 381
                  H TDVTNASRTML NI SL+WD  LC++F +P  ILP +RSSSEIYG
Sbjct:   190 INGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEILPNVRSSSEIYG 241

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q826J2	GLPK3_STRAW	2, ., 7, ., 1, ., 3, 0	0.4232	0.672	0.6653	yes	N/A
A3QIN4	GLPK_SHELP	2, ., 7, ., 1, ., 3, 0	0.4060	0.652	0.6546	yes	N/A
A8I8V7	GLPK_AZOC5	2, ., 7, ., 1, ., 3, 0	0.4433	0.672	0.6746	yes	N/A
A4FNR2	GLPK_SACEN	2, ., 7, ., 1, ., 3, 0	0.4185	0.672	0.672	yes	N/A
Q6AGR0	GLPK_LEIXX	2, ., 7, ., 1, ., 3, 0	0.4368	0.666	0.6581	yes	N/A
A5VZG7	GLPK_PSEP1	2, ., 7, ., 1, ., 3, 0	0.4113	0.666	0.6673	yes	N/A
C5C1C4	GLPK_BEUC1	2, ., 7, ., 1, ., 3, 0	0.4217	0.666	0.6594	yes	N/A
A1R6X6	GLPK_ARTAT	2, ., 7, ., 1, ., 3, 0	0.4419	0.666	0.6607	yes	N/A
Q8DBM6	GLPK_VIBVU	2, ., 7, ., 1, ., 3, 0	0.3970	0.678	0.6712	yes	N/A
A8H995	GLPK_SHEPA	2, ., 7, ., 1, ., 3, 0	0.4223	0.664	0.6734	yes	N/A
Q9RJM2	GLPK2_STRCO	2, ., 7, ., 1, ., 3, 0	0.4179	0.672	0.6627	yes	N/A
Q9CB81	GLPK_MYCLE	2, ., 7, ., 1, ., 3, 0	0.4367	0.674	0.6633	yes	N/A
A9WS93	GLPK_RENSM	2, ., 7, ., 1, ., 3, 0	0.4214	0.656	0.6507	yes	N/A
C3KBM0	GLPK_PSEFS	2, ., 7, ., 1, ., 3, 0	0.4087	0.666	0.6646	yes	N/A
A5EZR2	GLPK_VIBC3	2, ., 7, ., 1, ., 3, 0	0.3995	0.678	0.6712	yes	N/A
A8FQ89	GLPK_SHESH	2, ., 7, ., 1, ., 3, 0	0.4071	0.664	0.6707	yes	N/A
B8H8T1	GLPK_ARTCA	2, ., 7, ., 1, ., 3, 0	0.4444	0.666	0.6607	yes	N/A
Q4K734	GLPK_PSEF5	2, ., 7, ., 1, ., 3, 0	0.4087	0.666	0.6646	yes	N/A
A6TKR6	GLPK_ALKMQ	2, ., 7, ., 1, ., 3, 0	0.4130	0.67	0.67	yes	N/A
B7KN92	GLPK_METC4	2, ., 7, ., 1, ., 3, 0	0.4307	0.672	0.6706	yes	N/A
Q88NX8	GLPK_PSEPK	2, ., 7, ., 1, ., 3, 0	0.4164	0.666	0.6673	yes	N/A
B1MFT1	GLPK_MYCA9	2, ., 7, ., 1, ., 3, 0	0.4267	0.674	0.6686	yes	N/A
Q7MI93	GLPK_VIBVY	2, ., 7, ., 1, ., 3, 0	0.3970	0.678	0.6712	yes	N/A
A9W8T7	GLPK_METEP	2, ., 7, ., 1, ., 3, 0	0.4282	0.672	0.6706	yes	N/A
Q64516	GLPK_MOUSE	2, ., 7, ., 1, ., 3, 0	0.4556	0.69	0.6171	yes	N/A
B0TQM6	GLPK_SHEHH	2, ., 7, ., 1, ., 3, 0	0.4060	0.666	0.6754	yes	N/A
Q9KLJ9	GLPK_VIBCH	2, ., 7, ., 1, ., 3, 0	0.3970	0.678	0.6712	yes	N/A
A5VE44	GLPK_SPHWW	2, ., 7, ., 1, ., 3, 0	0.4232	0.66	0.6483	yes	N/A
C3LW10	GLPK_VIBCM	2, ., 7, ., 1, ., 3, 0	0.4019	0.678	0.6712	yes	N/A
B0KUG0	GLPK_PSEPG	2, ., 7, ., 1, ., 3, 0	0.4087	0.666	0.6673	yes	N/A
Q3K7I5	GLPK_PSEPF	2, ., 7, ., 1, ., 3, 0	0.4061	0.666	0.666	yes	N/A
A5CS23	GLPK_CLAM3	2, ., 7, ., 1, ., 3, 0	0.4436	0.672	0.6653	yes	N/A
Q01V13	GLPK_SOLUE	2, ., 7, ., 1, ., 3, 0	0.4253	0.67	0.6781	yes	N/A
B7VQ85	GLPK_VIBSL	2, ., 7, ., 1, ., 3, 0	0.3930	0.68	0.6706	yes	N/A
P32189	GLPK_HUMAN	2, ., 7, ., 1, ., 3, 0	0.4507	0.69	0.6171	yes	N/A
Q63060	GLPK_RAT	2, ., 7, ., 1, ., 3, 0	0.47	0.69	0.6583	yes	N/A
Q21944	GLPK_CAEEL	2, ., 7, ., 1, ., 3, 0	0.4202	0.684	0.6812	yes	N/A
B1ZGW7	GLPK_METPB	2, ., 7, ., 1, ., 3, 0	0.4342	0.66	0.6586	yes	N/A
A5UU55	GLPK_ROSS1	2, ., 7, ., 1, ., 3, 0	0.4105	0.672	0.6746	yes	N/A
B1LWN6	GLPK_METRJ	2, ., 7, ., 1, ., 3, 0	0.4257	0.658	0.6566	yes	N/A
Q14409	GLPK3_HUMAN	2, ., 7, ., 1, ., 3, 0	0.4675	0.69	0.6238	yes	N/A
A6WXV2	GLPK_OCHA4	2, ., 7, ., 1, ., 3, 0	0.4511	0.674	0.6753	yes	N/A
Q87M72	GLPK_VIBPA	2, ., 7, ., 1, ., 3, 0	0.3945	0.678	0.6712	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1.30	LOW CONFIDENCE prediction!
3rd Layer	2.7.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	500
cd07792	504	cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kin	0.0
TIGR01311	493	TIGR01311, glycerol_kin, glycerol kinase	1e-179
cd07769	484	cd07769, FGGY_GK, Glycerol kinases; a subfamily of	1e-173
PTZ00294	504	PTZ00294, PTZ00294, glycerol kinase-like protein;	1e-167
PLN02295	512	PLN02295, PLN02295, glycerol kinase	1e-153
PRK00047	498	PRK00047, glpK, glycerol kinase; Provisional	1e-153
cd07786	486	cd07786, FGGY_EcGK_like, Escherichia coli glycerol	1e-152
cd07795	496	cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisi	1e-151
COG0554	499	COG0554, GlpK, Glycerol kinase [Energy production	1e-151
cd07789	495	cd07789, FGGY_CsGK_like, Cellulomonas sp	1e-142
cd07796	503	cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and rel	1e-129
cd10427	487	cd10427, FGGY_GK_1, Uncharacterized subgroup; belo	1e-108
cd07791	484	cd07791, FGGY_GK2_bacteria, bacterial glycerol kin	7e-86
cd07793	504	cd07793, FGGY_GK5_metazoa, metazoan glycerol kinas	1e-68
cd07794	470	cd07794, FGGY_GK_like_proteobact, Proteobacterial	2e-67
pfam00370	245	pfam00370, FGGY_N, FGGY family of carbohydrate kin	2e-66
cd00366	435	cd00366, FGGY, FGGY family of carbohydrate kinases	2e-64
cd07804	492	cd07804, FGGY_XK_like_1, uncharacterized xylulose	2e-51
COG1070	502	COG1070, XylB, Sugar (pentulose and hexulose) kina	9e-48
cd07792	504	cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kin	5e-45
cd07803	482	cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup	4e-44
cd07808	482	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl	1e-39
cd07770	440	cd07770, FGGY_GntK, Gluconate kinases; a subfamily	3e-35
TIGR01312	481	TIGR01312, XylB, D-xylulose kinase	3e-34
cd07805	514	cd07805, FGGY_XK_like_2, uncharacterized xylulose	5e-33
TIGR01311	493	TIGR01311, glycerol_kin, glycerol kinase	3e-32
cd07769	484	cd07769, FGGY_GK, Glycerol kinases; a subfamily of	1e-31
cd07802	447	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamil	7e-31
cd07795	496	cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisi	7e-30
cd07774	430	cd07774, FGGY_1, uncharacterized subgroup; belongs	9e-29
PTZ00294	504	PTZ00294, PTZ00294, glycerol kinase-like protein;	3e-27
PRK00047	498	PRK00047, glpK, glycerol kinase; Provisional	6e-27
COG0554	499	COG0554, GlpK, Glycerol kinase [Energy production	7e-27
PLN02295	512	PLN02295, PLN02295, glycerol kinase	1e-26
cd07786	486	cd07786, FGGY_EcGK_like, Escherichia coli glycerol	1e-26
cd07796	503	cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and rel	5e-25
pfam02782	193	pfam02782, FGGY_C, FGGY family of carbohydrate kin	2e-24
cd07789	495	cd07789, FGGY_CsGK_like, Cellulomonas sp	4e-22
pfam00370	245	pfam00370, FGGY_N, FGGY family of carbohydrate kin	2e-20
cd10427	487	cd10427, FGGY_GK_1, Uncharacterized subgroup; belo	2e-18
cd07811	493	cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup	2e-17
cd07809	487	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup	2e-17
cd07779	488	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like	4e-17
TIGR01314	505	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	5e-17
cd07810	490	cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup	5e-15
cd07791	484	cd07791, FGGY_GK2_bacteria, bacterial glycerol kin	2e-14
cd07777	448	cd07777, FGGY_SHK_like, sedoheptulokinase-like pro	2e-14
cd00366	435	cd00366, FGGY, FGGY family of carbohydrate kinases	6e-14
cd07768	465	cd07768, FGGY_RBK_like, Ribulokinase-like carbohyd	5e-13
cd07793	504	cd07793, FGGY_GK5_metazoa, metazoan glycerol kinas	2e-12
cd07775	452	cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subf	2e-12
COG1070	502	COG1070, XylB, Sugar (pentulose and hexulose) kina	2e-11
cd07794	470	cd07794, FGGY_GK_like_proteobact, Proteobacterial	5e-11
PRK15027	484	PRK15027, PRK15027, xylulokinase; Provisional	2e-10
cd07771	440	cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfam	3e-10
cd07783	484	cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase	7e-10
cd07779	488	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like	3e-09
cd07808	482	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl	6e-09
TIGR01312	481	TIGR01312, XylB, D-xylulose kinase	1e-08
cd07810	490	cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup	2e-08
cd07802	447	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamil	7e-08
cd07798	437	cd07798, FGGY_AI-2K_like, Autoinducer-2 kinase-lik	8e-08
cd07803	482	cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup	1e-07
cd07804	492	cd07804, FGGY_XK_like_1, uncharacterized xylulose	6e-07
cd07783	484	cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase	8e-07
cd07805	514	cd07805, FGGY_XK_like_2, uncharacterized xylulose	1e-06
cd07782	536	cd07782, FGGY_YpCarbK_like, Yersinia Pseudotubercu	6e-06
cd07768	465	cd07768, FGGY_RBK_like, Ribulokinase-like carbohyd	7e-06
cd07779	488	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like	8e-06
cd07770	440	cd07770, FGGY_GntK, Gluconate kinases; a subfamily	1e-05
COG1069	544	COG1069, AraB, Ribulose kinase [Energy production	2e-05
cd07783	484	cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase	8e-05
cd07781	498	cd07781, FGGY_RBK, Ribulokinases; belongs to the F	9e-05
TIGR02628	465	TIGR02628, fuculo_kin_coli, L-fuculokinase	1e-04
PRK10939	520	PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; P	1e-04
cd07781	498	cd07781, FGGY_RBK, Ribulokinases; belongs to the F	3e-04
TIGR01315	541	TIGR01315, 5C_CHO_kinase, FGGY-family pentulose ki	3e-04
cd07768	465	cd07768, FGGY_RBK_like, Ribulokinase-like carbohyd	4e-04
TIGR01315	541	TIGR01315, 5C_CHO_kinase, FGGY-family pentulose ki	4e-04
cd07782	536	cd07782, FGGY_YpCarbK_like, Yersinia Pseudotubercu	0.002
COG1069	544	COG1069, AraB, Ribulose kinase [Energy production	0.002
cd07781	498	cd07781, FGGY_RBK, Ribulokinases; belongs to the F	0.002
cd07777	448	cd07777, FGGY_SHK_like, sedoheptulokinase-like pro	0.003
PRK15027	484	PRK15027, PRK15027, xylulokinase; Provisional	0.004
cd07773	448	cd07773, FGGY_FK, L-fuculose kinases; a subfamily	0.004

>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  604 bits (1560), Expect = 0.0
 Identities = 223/400 (55%), Positives = 275/400 (68%), Gaps = 54/400 (13%)

Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
           PL+G ID+GT + RF + +A T E + SH ++I  I P+EGW EQDP EIL +V   +++
Sbjct: 1   PLVGAIDQGTSSTRFLVFNAKTAELLSSHQVEIKQIFPKEGWVEQDPKEILNSVYECIEK 60

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
             +KL    +   DI  +GITNQRETTVVWD  TGEPLYNAIVW D R  + VD++LAK 
Sbjct: 61  TCKKLKELNIDVSDIKAIGITNQRETTVVWDKYTGEPLYNAIVWLDIRTQSTVDKLLAKI 120

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
           PD++K+YLK ICGLP+S YFSA+KL WL+ NV  VR+A++E RCLFGTVD+WL+WNLTG 
Sbjct: 121 PDKNKNYLKSICGLPISTYFSAVKLRWLLDNVPEVRKAVEEKRCLFGTVDSWLIWNLTGG 180

Query: 333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------- 382
                H+TDVTNASRTMLMNI++L+WDP LCK+F +P  ILPEIRSSSEIYG        
Sbjct: 181 PNGGVHITDVTNASRTMLMNIETLEWDPELCKFFGIPMEILPEIRSSSEIYGYIKEGPLE 240

Query: 383 --------------------------------------------VHSNNGLVTTVAYQFG 398
                                                       V S +GL+TTVAY+ G
Sbjct: 241 GIPISGILGDQQAALVGQMCFKKGQAKNTYGTGCFLLYNTGTKPVFSTHGLLTTVAYKLG 300

Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
           PD   IYALEGS+A+AGAA++WLRDNL ++    + E LA +V T+GDVYFVPAF GLYA
Sbjct: 301 PDKPTIYALEGSVAIAGAAIRWLRDNLGIIKTSSDIEKLASEVGTSGDVYFVPAFSGLYA 360

Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           PYWRKDARG+ICG+TQFTTK HI RAALEA+CFQTR+ILE
Sbjct: 361 PYWRKDARGIICGLTQFTTKNHIARAALEAVCFQTREILE 400

This subgroup corresponds to a group of metazoan glycerol kinases (GKs), coded by X chromosome-linked GK genes, and glycerol kinase (GK)-like proteins, coded by autosomal testis-specific GK-like genes (GK-like genes, GK1 and GK3). Sequence comparison shows that metazoan GKs and GK-like proteins in this family are closely related to the bacterial GKs, which catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). The metazoan GKs do have GK enzymatic activity. However, the GK-like metazoan proteins do not exhibit GK activity and their biological functions are not yet clear. Some of them lack important functional residues involved in the binding of ADP and Mg2+, which may result in the loss of GK catalytic function. Others that have conserved catalytic residues have lost their GK activity as well; the reason remains unclear. It has been suggested the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase

 Score =  511 bits (1319), Expect = e-179
 Identities = 191/398 (47%), Positives = 236/398 (59%), Gaps = 60/398 (15%)

Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
           P I  ID+GT + R  +        V  H  + + I P+ GW E DPMEI ++V + +  
Sbjct: 1   PYILAIDQGTTSSRAIVFDK-DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAE 59

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
           A+ K    G+  DDI  +GITNQRETTVVWD  TG+PLYNAIVW D R  +I +++ A+ 
Sbjct: 60  ALAKA---GIKPDDIAAIGITNQRETTVVWDKATGKPLYNAIVWQDRRTASICEELKAEG 116

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
                ++++   GLP+ PYFSA KL WL+ NV  VR A +    LFGT+DTWL+WNLTG 
Sbjct: 117 YG---EFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAERGELLFGTIDTWLIWNLTGG 173

Query: 333 TCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK---------- 382
             HVTDVTNASRTML NI +L WD  L + F +P  ILPE+RSSSE+YG           
Sbjct: 174 KVHVTDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGYTDPGLLGAEI 233

Query: 383 ------------------------------------------VHSNNGLVTTVAYQFGPD 400
                                                     V S +GL+TTVAYQ G  
Sbjct: 234 PITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGGK 293

Query: 401 ATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPY 460
             P+YALEGS+ VAGAAV+WLRDNL L+ +  E+E+LA  V   G VYFVPAF GL APY
Sbjct: 294 K-PVYALEGSVFVAGAAVQWLRDNLKLIKHAAESEALARSVEDNGGVYFVPAFTGLGAPY 352

Query: 461 WRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           W  DARG I G+T+ TTK HI RAALEAI FQTRD+LE
Sbjct: 353 WDPDARGAIFGLTRGTTKAHIARAALEAIAFQTRDVLE 390

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases [Energy metabolism, Other]. Length = 493

>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score =  497 bits (1282), Expect = e-173
 Identities = 201/398 (50%), Positives = 246/398 (61%), Gaps = 61/398 (15%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
            I  ID+GT + RF II     E V SH ++   I PQ GW E DP EI   V   ++ A
Sbjct: 1   YILAIDQGTTSTRF-IIFDRDGEVVSSHQVEHEQIYPQPGWVEHDPEEIWANVVQCIEEA 59

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
           ++KL    +S + I  +GITNQRETTV WD  TG+PLYNAIVW DTR   IV+++ A   
Sbjct: 60  LKKL---RISPEQIKAIGITNQRETTVAWDKETGKPLYNAIVWQDTRTSEIVEELKA--- 113

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
           D + DY +   GLP+SPYFSALKL WL++NV  VR AI+E   LFGT+DTWL+WNLTG  
Sbjct: 114 DGNADYFREKTGLPISPYFSALKLRWLLENVPEVREAIEEGTLLFGTIDTWLIWNLTGGK 173

Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG------------ 381
            HVTDVTNASRTMLMN+ +LQWD  L + F +P   LPEIRSSSE+YG            
Sbjct: 174 VHVTDVTNASRTMLMNLHTLQWDEELLELFGIPSECLPEIRSSSEVYGYTNEGGLLGEGI 233

Query: 382 -----------------------------------------KVHSNNGLVTTVAYQFGPD 400
                                                     V S +GL+TT+AY+ GP 
Sbjct: 234 PIAGCLGDQQAALFGQGCFEAGDAKCTYGTGCFLLMNTGEKPVISEHGLLTTIAYKLGP- 292

Query: 401 ATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPY 460
             P+YALEGSIAVAG+AV+WLRDNL ++ +  E E LA  V  TG VYFVPAF GL+APY
Sbjct: 293 GKPVYALEGSIAVAGSAVQWLRDNLKIISSASEVEELAASVEDTGGVYFVPAFSGLFAPY 352

Query: 461 WRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           W  DARG I G+T+ TT+ HI+RAALEAI FQTRD+L+
Sbjct: 353 WDPDARGTILGLTRGTTRAHIVRAALEAIAFQTRDVLD 390

This subfamily includes glycerol kinases (GK; EC 2.7.1.30) and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Human GK deficiency, called hyperglycerolemia, is an X-linked recessive trait associated with psychomotor retardation, osteoporosis, spasticity, esotropia, and bone fractures. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of GKs is created only by a substrate-induced conformational change. Based on sequence similarity, some GK-like proteins from metazoa, which have lost their GK enzymatic activity, are also included in this CD. Members in this subfamily belong to the FGGY family of carbohydrate kinases. Length = 484

>gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional

 Score =  482 bits (1244), Expect = e-167
 Identities = 193/401 (48%), Positives = 238/401 (59%), Gaps = 58/401 (14%)

Query: 152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 211
           +  IG ID+GT + RF II       V SH +    I+P  GW E DP EIL+ V   M+
Sbjct: 1   MKYIGSIDQGTTSTRF-IIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMN 59

Query: 212 RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAK 271
            AI+KL   G S   I  +GITNQRET V WD  TG+PLYNAIVW DTR  +IV+++  K
Sbjct: 60  EAIKKLREKGPSFK-IKAIGITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNELTKK 118

Query: 272 FPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTG 331
           +     ++ + I GLP+S YFSA K+ W+++NV +V+ A+KE   LFGT+DTWL+WNLTG
Sbjct: 119 YGG--SNFFQKITGLPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTIDTWLIWNLTG 176

Query: 332 RTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEI------------ 379
              HVTDVTNASRT LMNI +L+WD  L   F +P   LPEI+SSSE             
Sbjct: 177 GKSHVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEIKSSSENFGTISGEAVPLL 236

Query: 380 ------------------------------YG------------KVHSNNGLVTTVAYQF 397
                                         YG             V S +GL+TTV YQ 
Sbjct: 237 EGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQL 296

Query: 398 GPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLY 457
           GP+   +YALEGSIAVAGA V+WLRDN+ L+ +  E E LA  V  TG V FVPAF GL+
Sbjct: 297 GPNGPTVYALEGSIAVAGAGVEWLRDNMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLF 356

Query: 458 APYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           APYWR DARG I GMT  TT+ HI+RAALEAI  QT D++E
Sbjct: 357 APYWRPDARGTIVGMTLKTTRAHIVRAALEAIALQTNDVIE 397

Length = 504

>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase

 Score =  447 bits (1151), Expect = e-153
 Identities = 186/400 (46%), Positives = 241/400 (60%), Gaps = 57/400 (14%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
            +G ID+GT + RF II       V SH ++ + I PQ GW E DPMEIL++V T + +A
Sbjct: 1   FVGAIDQGTTSTRF-IIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKA 59

Query: 214 IEKLSAHGLSRDD-IVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
           +EK +A G + D  +  +GITNQRETTV W  +TG PLYNAIVW D+R  +I  ++  + 
Sbjct: 60  LEKAAAKGHNVDSGLKAIGITNQRETTVAWSKSTGRPLYNAIVWMDSRTSSICRRLEKEL 119

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTG- 331
               K      CGLP+S YFSA KL WL++NV +V+ A+K    LFGT+D+WL+WNLTG 
Sbjct: 120 SGGRKH-FVETCGLPISTYFSATKLLWLLENVDAVKEAVKSGDALFGTIDSWLIWNLTGG 178

Query: 332 --RTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------- 382
                HVTDVTNASRTMLMN+ +L WD    +   +P  ILP+I S+SE+ G        
Sbjct: 179 ASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSNSEVIGTIAKGWPL 238

Query: 383 --------------------------------------------VHSNNGLVTTVAYQFG 398
                                                       V S +GL+TTVAY+ G
Sbjct: 239 AGVPIAGCLGDQHAAMLGQRCRPGEAKSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLG 298

Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
           PDA   YALEGS+A+AGAAV+WLRDNL ++ +  E E+LA  V  TG VYFVPAF GL+A
Sbjct: 299 PDAPTNYALEGSVAIAGAAVQWLRDNLGIIKSASEIEALAATVDDTGGVYFVPAFSGLFA 358

Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           P WR DARGV  G+T+FT K HI RA LE++CFQ +D+L+
Sbjct: 359 PRWRDDARGVCVGITRFTNKAHIARAVLESMCFQVKDVLD 398

Length = 512

>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional

 Score =  445 bits (1146), Expect = e-153
 Identities = 171/397 (43%), Positives = 223/397 (56%), Gaps = 62/397 (15%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           I  +D+GT + R AII       V     + + I PQ GW E DP EI  +  + +  A 
Sbjct: 7   ILALDQGTTSSR-AIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEA- 64

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
             L+  G+S D I  +GITNQRETTVVWD  TG P+YNAIVW D R  +I +++     D
Sbjct: 65  --LAKAGISPDQIAAIGITNQRETTVVWDKETGRPIYNAIVWQDRRTADICEELKR---D 119

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
             +DY++   GL + PYFS  K+ W++ NV   R   ++   LFGT+DTWLVW LTG   
Sbjct: 120 GYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARERAEKGELLFGTIDTWLVWKLTGGKV 179

Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------------ 382
           HVTD TNASRTML NI +L WD  L +   +P ++LPE+R SSE+YGK            
Sbjct: 180 HVTDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPSSEVYGKTNPYGFFGGEVP 239

Query: 383 -----------------------------------------VHSNNGLVTTVAYQFGPDA 401
                                                    V S NGL+TT+A+    D 
Sbjct: 240 IAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWGI--DG 297

Query: 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYW 461
             +YALEGSI VAG+A++WLRD L ++ +  ++E+LA KV     VY VPAF GL APYW
Sbjct: 298 KVVYALEGSIFVAGSAIQWLRDGLKIISDASDSEALARKVEDNDGVYVVPAFTGLGAPYW 357

Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
             DARG I G+T+ TTK HIIRA LE+I +QTRD+L+
Sbjct: 358 DSDARGAIFGLTRGTTKEHIIRATLESIAYQTRDVLD 394

Length = 498

>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  443 bits (1142), Expect = e-152
 Identities = 168/400 (42%), Positives = 222/400 (55%), Gaps = 67/400 (16%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
            I  ID+GT + R AI+       V     + + I P+ GW E DP EI ++       A
Sbjct: 1   YILAIDQGTTSSR-AILFDHDGNIVAVAQREFTQIYPKPGWVEHDPEEIWESQLAVAREA 59

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
           + K    G+   DI  +GITNQRETTVVWD  TG+P+YNAIVW D R  +I +++     
Sbjct: 60  LAK---AGIRASDIAAIGITNQRETTVVWDRETGKPVYNAIVWQDRRTADICEEL----- 111

Query: 274 DQDKDYLKPIC---GLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLT 330
            + + + + I    GL + PYFSA K+ W++ NV   R   +     FGT+D+WL+W LT
Sbjct: 112 -KAEGHEEMIREKTGLVLDPYFSATKIRWILDNVPGARERAERGELAFGTIDSWLIWKLT 170

Query: 331 GRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK-------- 382
           G   H TDVTNASRTML NI +L+WD  L + F +P ++LPE++ SSE++G         
Sbjct: 171 GGKVHATDVTNASRTMLFNIHTLEWDDELLELFGIPASMLPEVKPSSEVFGYTDPDLLGA 230

Query: 383 --------------------------------------------VHSNNGLVTTVAYQFG 398
                                                       V S NGL+TT+A+Q  
Sbjct: 231 EIPIAGIAGDQQAALFGQACFEPGMAKNTYGTGCFMLMNTGEKPVRSKNGLLTTIAWQ-- 288

Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
                 YALEGSI +AGAAV+WLRD L L+++  ETE+LA  V   G VYFVPAF GL A
Sbjct: 289 LGGKVTYALEGSIFIAGAAVQWLRDGLGLIESAAETEALARSVPDNGGVYFVPAFTGLGA 348

Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           PYW  DARG I G+T+ TT+ HI RAALE+I +QTRD+LE
Sbjct: 349 PYWDPDARGAIFGLTRGTTRAHIARAALESIAYQTRDLLE 388

This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 486

>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  439 bits (1132), Expect = e-151
 Identities = 191/402 (47%), Positives = 245/402 (60%), Gaps = 57/402 (14%)

Query: 152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 211
            PL+G ID+GT + RF + +   Q  V SH ++ S I P  GW E DP EI+ +V   + 
Sbjct: 1   TPLVGSIDQGTTSTRFILFNRDGQP-VASHQIEFSQIYPHPGWHEHDPEEIVSSVVQCIA 59

Query: 212 RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAK 271
            A++ L   G S+ D+  +GITNQRETTVVWD  TG+PLYNAIVW+DTR  + V ++ +K
Sbjct: 60  SALKSLETSGFSKYDVKVIGITNQRETTVVWDRETGKPLYNAIVWNDTRTTSTVRELESK 119

Query: 272 FPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTG 331
                 + L+ ICGLP+S YFS++KL W++ NV  V++A  +    FGTVD+WL++NLTG
Sbjct: 120 LKKG-AEALREICGLPLSTYFSSVKLRWMLDNVPEVKKAYDDGDLAFGTVDSWLIYNLTG 178

Query: 332 RTC---HVTDVTNASRTMLMNIDSLQWDPLLCKYFAV-PPTILPEIRSSSEIYGK----- 382
                 HVTDVTNASRTM MN+ +L++D  L  +F +    ILPEI SSSE+YG      
Sbjct: 179 GPKTKVHVTDVTNASRTMFMNLATLKYDQKLLDFFGIDKKIILPEIVSSSEVYGNIAYGP 238

Query: 383 ----------------------------------------------VHSNNGLVTTVAYQ 396
                                                         V S +GL+TTVAYQ
Sbjct: 239 LEGVPIAGCLGDQSAALVGQKAFTPGEAKNTYGTGCFLLYNTGEKPVISKHGLLTTVAYQ 298

Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
           FGP A P+YALEGSIAVAG+AVKWLRDNL L+    +   LA +V  +G V FV AF GL
Sbjct: 299 FGPGAKPVYALEGSIAVAGSAVKWLRDNLGLISKAEDIGELASQVPDSGGVVFVTAFSGL 358

Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           +APYW  DARG I G+TQ+TTK HI RAALEA+CFQTR IL+
Sbjct: 359 FAPYWDDDARGTIFGITQYTTKSHIARAALEAVCFQTRAILD 400

This subgroup corresponds to a small group of fungal glycerol kinases (GK), including Saccharomyces cerevisiae Gut1p/YHL032Cp, which phosphorylates glycerol to glycerol-3-phosphate in the cytosol. Glycerol utilization has been considered as the sole source of carbon and energy in S. cerevisiae, and is mediated by glycerol kinase and glycerol 3-phosphate dehydrogenase, which is encoded by the GUT2 gene. Members in this family show high similarity to their prokaryotic and eukaryotic homologs. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 496

>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion]

 Score =  439 bits (1132), Expect = e-151
 Identities = 172/402 (42%), Positives = 224/402 (55%), Gaps = 61/402 (15%)

Query: 149 QTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQT 208
                 I  ID+GT + R  +        V     + + I PQ GW E DP+EI  +V++
Sbjct: 1   MLADKYILAIDQGTTSSRAIVFDE-DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRS 59

Query: 209 TMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQV 268
            +  A+ K    G+   +I  +GITNQRETTVVWD  TG+P+YNAIVW D R  +I +++
Sbjct: 60  VLKEALAKA---GIKPGEIAAIGITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEEL 116

Query: 269 LAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWN 328
            A   D  ++ ++   GL + PYFSA K+ W++ NV   R   ++   LFGT+DTWL+W 
Sbjct: 117 KA---DGYEERIREKTGLVLDPYFSATKIKWILDNVPGARERAEKGELLFGTIDTWLIWK 173

Query: 329 LTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH---- 384
           LTG   HVTD +NASRTML NI SL+WD  L +   +P ++LPE+R SSEIYG       
Sbjct: 174 LTGGKVHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEVRPSSEIYGVTGIGFL 233

Query: 385 ------------------------------------------------SNNGLVTTVAYQ 396
                                                           S NGL+TT+A+ 
Sbjct: 234 GAEVPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWG 293

Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
              D    YALEGSI VAGAAV+WLRD L L+D+  ++E LAE V   G VYFVPAF GL
Sbjct: 294 L--DGKVTYALEGSIFVAGAAVQWLRDGLGLIDDASDSEELAESVEDNGGVYFVPAFTGL 351

Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
            APYW  DARG I G+T+ TTK HI RA LE+I +QTRD+LE
Sbjct: 352 GAPYWDSDARGAIFGLTRGTTKAHIARATLESIAYQTRDVLE 393

Length = 499

>gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp

 Score =  417 bits (1075), Expect = e-142
 Identities = 176/399 (44%), Positives = 227/399 (56%), Gaps = 63/399 (15%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           +  ID+GT + R  +        V     +   I P+ GW E DP EI +  +  +  A 
Sbjct: 2   VAAIDQGTTSTRCIVFDH-HGRIVSVAQKEHRQIFPRPGWVEHDPEEIWENTRRVISGA- 59

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
             L+  GL+ +DI  +GITNQRETTVVWD  TG P+YNAIVW DTR D I  ++ A   D
Sbjct: 60  --LAKAGLTPEDIAAVGITNQRETTVVWDRATGRPVYNAIVWQDTRTDEICRELAA---D 114

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT- 333
           + +   +   GLP++ YFS  K+ W++ NV   R   ++   LFGT+DTWL+WNLTG   
Sbjct: 115 EGQQRFRARTGLPLATYFSGPKIRWILDNVPGARERAEKGDLLFGTMDTWLLWNLTGGPR 174

Query: 334 --CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK--------- 382
              HVTDVTNASRTMLM++++L WDP L   F +P ++LPEIR SSE+YG          
Sbjct: 175 GGVHVTDVTNASRTMLMDLETLDWDPELLAAFGIPRSMLPEIRPSSEVYGTVRGRGILAG 234

Query: 383 -------------------------------------------VHSNNGLVTTVAYQFGP 399
                                                      V S +GL+TTVAYQFG 
Sbjct: 235 VPIAGVLGDQQAALFGQTCFEAGEAKNTYGTGCFLLLNTGTEPVRSKHGLLTTVAYQFG- 293

Query: 400 DATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAP 459
               +YALEGSIAV G+ V+WLRDNL L+    E E+LA  V   G VYFVPAF GL+AP
Sbjct: 294 GQPAVYALEGSIAVTGSLVQWLRDNLGLIKTAAEIETLARTVEDNGGVYFVPAFSGLFAP 353

Query: 460 YWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           YWR DARGVI G+T++  KGHI RA LEA  FQTR++++
Sbjct: 354 YWRSDARGVIVGLTRYVNKGHIARAVLEATAFQTREVVD 392

glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup corresponds to a small group of bacterial glycerol kinases (GK) with similarity to Cellulomonas sp. glycerol kinase (CsGK). CsGK might exist as a dimer. Its monomer is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The regulation of the catalytic activity of this group has not yet been examined. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 495

>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  383 bits (986), Expect = e-129
 Identities = 183/401 (45%), Positives = 245/401 (61%), Gaps = 59/401 (14%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
            IG ID+GT + RF II     + V SH ++ + I PQ GW E DPMEIL+ V+  M+ A
Sbjct: 1   YIGSIDQGTTSTRF-IIYDTAAKVVASHQVEFTQIYPQAGWVEHDPMEILETVKKCMEGA 59

Query: 214 IEKLSAHGLSRDD-IVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
           + K  A GL   D +  +GITNQRETTVVW  +TG PLYNAIVW D R  +I  ++  + 
Sbjct: 60  LAKAKAKGLDVLDGLKAIGITNQRETTVVWSRSTGLPLYNAIVWMDARTSSICRRLEKEL 119

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTG- 331
           P+  + +++  CGLP+S YFSA KL WL+++V  V+ A+K    LFGT+DTWL+WNLTG 
Sbjct: 120 PEGGRHFVET-CGLPISTYFSATKLLWLMEHVDEVKAAVKSGDALFGTIDTWLIWNLTGG 178

Query: 332 ----RTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV---- 383
                  HVTD TNA+RTMLM++ +LQW     K   +P +ILP+I S+ E+ G++    
Sbjct: 179 INGEEGVHVTDCTNAARTMLMDLKTLQWHEPTLKDLGIPRSILPKIISNVEVIGEISEGW 238

Query: 384 -----------------------------------------------HSNNGLVTTVAYQ 396
                                                           SN+GL+TT+AY+
Sbjct: 239 PFAGIQLAGCLGDQHAAMLGQQCRKGEAKSTYGTGCFILLNTGEQIIPSNHGLLTTIAYK 298

Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
            GPDA   YALEGSIA+AGAAV+WLRD+L ++ +  E ESLA+ V  TG VYFVPAF GL
Sbjct: 299 LGPDAPTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIESLAKTVNNTGGVYFVPAFNGL 358

Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDIL 497
           +AP+WR DARGV  G+T++T K HI RA LE++CFQ +++L
Sbjct: 359 FAPWWRDDARGVCIGITRYTNKAHIARAVLESMCFQVKEVL 399

This subgroup includes Arabidopsis NHO1 (also known as NONHOST1, or noh-host resistant 1) and other putative plant glycerol kinases, which share strong homology with glycerol kinases from bacteria, fungi, and animals. Nonhost resistance of plants refers to the phenomenon observed when all members of a plant species are typically resistant to a specific parasite. NHO1 is required for nonspecific resistance to nonhost Pseudomonas bacteria, it is also required for resistance to the fungal pathogen Botrytis cinerea. This subgroup belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 503

>gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the glycerol kinases subfamily of the FGGY family of carbohydrate kinases

 Score =  329 bits (846), Expect = e-108
 Identities = 138/364 (37%), Positives = 187/364 (51%), Gaps = 61/364 (16%)

Query: 188 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 247
           I P+ GW E DP EI +     +   +E+    G+   +I  LGITNQRETTV WD  TG
Sbjct: 34  IYPENGWVEHDPEEIYENTLQAVKDLLEE---FGIDPAEIEGLGITNQRETTVAWDKRTG 90

Query: 248 EPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSV 307
           +PLYNAIVW   R   I ++ L +    +   +K   GL + PYFSA K++WL++NV  V
Sbjct: 91  KPLYNAIVWQCQRGKAICER-LKEEGYAEL--IKQKTGLKIDPYFSASKMAWLLENVEGV 147

Query: 308 RRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPP 367
           R A  +    FGT+D+WL++ LT      TD +NASRT L NI +L WD  LC+ F +P 
Sbjct: 148 REAASKGDLAFGTIDSWLIYKLTNGKSFKTDYSNASRTQLFNIHTLDWDEELCELFGIPR 207

Query: 368 TILPEIRSSSEI-----------------------------------------YGK---- 382
            ILPE+  S  +                                         YG     
Sbjct: 208 KILPEVLDSDSVFGYTDLNGILPHPIPIHGVLGDSHAALFGQGCFEPGMIKVTYGTGSSV 267

Query: 383 --------VHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRET 434
                   V S++GLVT++A  +       Y LEG+I   GA + WL+D L L+ +  ET
Sbjct: 268 MMNIGEKPVLSDHGLVTSLA--WSVGGKVTYVLEGNINYTGATITWLKDKLGLIQDPAET 325

Query: 435 ESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTR 494
           E LA        VY VPAF GL APYW+ DA+  I GMT+ T K  ++RAALE+I +Q  
Sbjct: 326 EELALSANPNDGVYLVPAFTGLGAPYWKSDAKAAIVGMTRTTGKAELVRAALESIAYQIN 385

Query: 495 DILE 498
           D+++
Sbjct: 386 DVID 389

This subgroup contains uncharacterized bacterial proteins belonging to the glycerol kinase subfamily of the FGGY family of carbohydrate kinases. The glycerol kinase subfamily includes glycerol kinases (GK; EC 2.7.1.30), and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 487

>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  272 bits (697), Expect = 7e-86
 Identities = 138/397 (34%), Positives = 186/397 (46%), Gaps = 64/397 (16%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
            I  IDEGT   + A++       V S S  +    PQ GW EQD   I  AVQ    +A
Sbjct: 1   FILAIDEGTTNAK-AVLVDRDGTVVASGSAPVGIQYPQPGWVEQDAEAIWAAVQ----QA 55

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
           I    A G+   ++  + I+NQRE+ V+WD  TG PL   + W   R       + A+  
Sbjct: 56  IADCLA-GVLAAEVAAIAISNQRESVVIWDRQTGAPLGPVLSWQCRRTAAACAALRAE-- 112

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
              +  +    GLP+ P FSA K+ WL+  V        + R   GTVD+WL+WNLTG  
Sbjct: 113 -GHEPMVAARTGLPIDPMFSASKMRWLLDRVDDGPARAAQGRLCLGTVDSWLLWNLTGGA 171

Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIY------------- 380
              TD +NA+RT L+++   QWDP L   F +P   LP++ +S+  +             
Sbjct: 172 VFATDASNAARTQLLDLHGGQWDPQLLDLFGIPRAALPDVLASAGDFGHTRGLGGLPDGV 231

Query: 381 ------GKVH---------------------------------SNNGLVTTVAYQFGPDA 401
                 G  H                                  ++GL TT+A+  G   
Sbjct: 232 PILAMIGDSHAALFGHGAFAPGEVKATYGTGSSVMTPLRQAIAPSHGLSTTIAWHDG--G 289

Query: 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYW 461
            P YALEG+I V GAAV W+ D L L D       LA      G VYFVPA  GL AP+W
Sbjct: 290 EPTYALEGNITVTGAAVAWMADLLGLPD-PAALSELAATASDNGGVYFVPALTGLGAPWW 348

Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
            +DARG+I G+T  T + H+ RAALE+I FQ  D+ E
Sbjct: 349 DRDARGLISGLTLGTGRAHLARAALESIAFQIADVFE 385

This subgroup corresponds to a group of putative bacterial glycerol kinases (GK), which may be coded by the GK-like gene, GK2. Sequence comparison shows members in this CD are homologs of Escherichia coli GK. They retain all functionally important residues, and may catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  227 bits (581), Expect = 1e-68
 Identities = 117/412 (28%), Positives = 181/412 (43%), Gaps = 78/412 (18%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMD-ISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           +  +D GT T+R  I     Q EVV  S D I  + P+ G+ E DP ++   +   +  A
Sbjct: 2   VLALDVGTTTIRCFIYDR--QAEVVGSSYDKIELLYPEPGYVEIDPDKLWTQIVGVIKEA 59

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQ------ 267
           ++      L+   I  LGI+ QR + + W+ +TG+P +N I W D RAD +V +      
Sbjct: 60  VKD---ANLTAKQIAGLGISTQRGSFLTWNKSTGKPYHNFITWKDLRADELVKEWNNSLL 116

Query: 268 ---------VLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLF 318
                    VL       + +L     L        L+L W++QN   +++A+KE   LF
Sbjct: 117 MKAIRVASKVLHLLTRSKR-FLAASV-LKFMNQHVTLRLLWVLQNNPELKKALKEGNVLF 174

Query: 319 GTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSE 378
           GT+DTWL++ LTG   HVTDV+NAS T L +  +++W       F +P +ILP++  +S 
Sbjct: 175 GTIDTWLLYKLTGGKEHVTDVSNASATGLFDPFTMEWSSWALSLFGIPSSILPKVVDTSG 234

Query: 379 IYGKVH----------------------------------------------------SN 386
            +G                                                       S 
Sbjct: 235 DFGSTDPELFGVPIPIRASVGDQQAALFGSCCFERGDVKITMGTGAFVNINTGPKPHASV 294

Query: 387 NGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGD 446
            GL   V ++ G +    Y  EG+    G A+ W + ++ L  +  ET  +A  V  +  
Sbjct: 295 KGLYPLVGWKIGNEVV--YLAEGASNDTGTAIDWAQ-SIGLFTDPAETSDMANSVPDSEG 351

Query: 447 VYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           VYF+PAF GL  P     A     G+   TTK H++RA LE+I F+ + + E
Sbjct: 352 VYFIPAFSGLQPPINDPRACAGFIGLKPSTTKEHLVRALLESIAFRIKQLYE 403

This subgroup corresponds to a group of metazoan putative glycerol kinases (GK), which may be coded by the GK-like gene, GK5. Sequence comparison shows members of this group are homologs of bacterial GKs, and they retain all functionally important residues. However, GK-like proteins in this family do not have detectable GK activity. The reason remains unclear. It has been suggested tha the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  223 bits (571), Expect = 2e-67
 Identities = 121/390 (31%), Positives = 190/390 (48%), Gaps = 67/390 (17%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           I  ID+GT + R  +     +  ++  ++      P  GW E DP+E+L  ++       
Sbjct: 3   IAAIDQGTTSTRVLVAGEDGKAFIL-LALRHKQHYPNPGWVEHDPLELLANLRAC----- 56

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
             L A G     +  +G+ NQ E+ + WD  +GEPL   IVW D R +++++++ A   +
Sbjct: 57  --LEAAG----VVDAIGLANQGESCLAWDARSGEPLSPVIVWQDNRTESVLERLRA---E 107

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
             +  ++   GLP+  YFSA KL W+++N+ +VRRA +  R   GT D + +  LTG   
Sbjct: 108 GAEAMVRARTGLPLDAYFSASKLGWILRNLPAVRRAHRRGRLRLGTTDAFFLDRLTGT-- 165

Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV----------- 383
            VTDVT ASRT LMN+++LQWDP LC+ F VP   LPEIR +   +G +           
Sbjct: 166 FVTDVTTASRTSLMNLETLQWDPELCRLFGVPIECLPEIRPTVGDFGDIGCTPLTASIVD 225

Query: 384 -------HS-----------------------------NNGLVTTVAYQFGPDATPIYAL 407
                  H                               +GL+ TVA+Q G    P+YAL
Sbjct: 226 QQASLYGHGCRQPGDAKITFGTGAFALAITGEVIPRAPGSGLLPTVAWQIG--EPPVYAL 283

Query: 408 EGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARG 467
           +G +  A AAV+W +  L L  +  E  +          + FVPA  GL  P+W + A G
Sbjct: 284 DGGVYDAAAAVEWAK-RLGLFSDFEELAAFPAPPAIARGLAFVPALSGLACPHWDRSAAG 342

Query: 468 VICGMTQFTTKGHIIRAALEAICFQTRDIL 497
           +  GM+  TT+  + +A LE +  ++ +++
Sbjct: 343 LWLGMSLATTRQDMCQALLEGVAMRSAEVI 372

This subgroup corresponds to a small group of proteobacterial glycerol kinase (GK)-like proteins, including the glycerol kinase from Pseudomonas aeruginosa. Most bacteria, such as Escherichia coli, take up glycerol passively by facilitated diffusion. In contrast, P. aeruginosa may also utilize a binding protein-dependent active transport system to mediate glycerol transportation. The glycerol kinase subsequently phosphorylates the intracellular glycerol to glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 470

>gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal domain

 Score =  214 bits (546), Expect = 2e-66
 Identities = 89/255 (34%), Positives = 127/255 (49%), Gaps = 23/255 (9%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
            +  ID GT + +  + +    + V S S   + ISP+ GWAEQDP EI QA+     +A
Sbjct: 1   YVLGIDCGTTSTKAIVFNK-QGKVVASASAPYALISPKPGWAEQDPEEIWQALA----QA 55

Query: 214 IEK-LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
           I K L   G+S   I  +GI+ Q    V+ D N  +PLY AI+W+DTR   IV+ +  + 
Sbjct: 56  IRKILQQSGISPKQIKGIGISGQGHGLVLLDKN-DKPLYPAILWNDTRTAEIVENLKEEG 114

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
                D L  I G  + P F+  KL WL ++   +    +     F  +  +L W LTG+
Sbjct: 115 ---GADKLYEITGNTIWPGFTLSKLRWLKEHEPEIFERAR----KFLLIHDYLRWRLTGQ 167

Query: 333 TCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTT 392
               TD ++AS TM+ NI +L+WD  L     +PP +LP +  SSEIYG       L   
Sbjct: 168 --FTTDYSDASGTMMFNIKTLEWDEELLAILGIPPDLLPPLVESSEIYGT------LNPE 219

Query: 393 VAYQFGPDA-TPIYA 406
            A  FG D   P+  
Sbjct: 220 HAALFGLDEGIPVVG 234

This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain. Length = 245

>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases

 Score =  214 bits (548), Expect = 2e-64
 Identities = 105/398 (26%), Positives = 161/398 (40%), Gaps = 69/398 (17%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           I  +D GT +V+  +        +   S +     P+ GW EQDP EI QA+   +  A 
Sbjct: 2   ILGLDVGTTSVKAVLFD-EQGNILAEASREYEVSYPKPGWVEQDPEEIWQALCEVLREAA 60

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
            + S        I  +G+++Q E  ++ D N G PL  AI+W D+R     +++  +   
Sbjct: 61  AQASGG-----QIAAIGVSSQGEGVILVDAN-GRPLTPAILWQDSRTAEECERLEEQI-- 112

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
              D +    GL   P FS  KL WL ++   +            TV  +L + LTG   
Sbjct: 113 -GADEIYERTGLRPHPMFSGPKLLWLKEHRPEIYSKAD----KILTVADYLAYRLTGE-- 165

Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS--------- 385
            V D +NASRTML +I +  WDP L +   +P  +LPE+    E+ G + +         
Sbjct: 166 FVIDYSNASRTMLFDIQTRDWDPELLEAAGIPRELLPEVVPPGEVAGAISAEAAALLGLP 225

Query: 386 -----------------------------NNGLVTTVAYQFGPDATPIYAL--------- 407
                                        + G    +     P+      L         
Sbjct: 226 PGTPVVAGGHDQQCAALGAGAVDEGDAALSAGTSEVITAVSEPEPATDEGLLCYPAAIPG 285

Query: 408 ----EGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKV--MTTGDVYFVPAFGGLYAPYW 461
               E S    GA ++W RD   L ++  + E+ A++        +  +P F G   PYW
Sbjct: 286 KYVTEASFFTGGALLRWFRDEFGLREDGSDYEAAAQEAPNSGPNGLLILPHFSGSGTPYW 345

Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499
              ARG I G+T  TT+  I RA LE I ++ RD L+ 
Sbjct: 346 DPAARGAIFGLTLGTTRADIYRALLEGIAYELRDNLDA 383

This family is predominantly composed of glycerol kinase (GK) and similar carbohydrate kinases including rhamnulokinase (RhuK), xylulokinase (XK), gluconokinase (GntK), ribulokinase (RBK), and fuculokinase (FK). These enzymes catalyze the transfer of a phosphate group, usually from ATP, to their carbohydrate substrates. The monomer of FGGY proteins contains two large domains, which are separated by a deep cleft that forms the active site. One domain is primarily involved in sugar substrate binding, and the other is mainly responsible for ATP binding. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Substrate-induced conformational changes and a divalent cation may be required for the catalytic activity. Length = 435

>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases

 Score =  182 bits (463), Expect = 2e-51
 Identities = 105/405 (25%), Positives = 164/405 (40%), Gaps = 74/405 (18%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVV-SHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
           L+G ID GT + +  +       EV+   S +    +PQ GWAEQDP     AV   +  
Sbjct: 2   LLG-IDIGTSSTKAVLFD--LDGEVLAQASREYELSTPQPGWAEQDPEVWWDAVCEIIRE 58

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
            + K         +I  +G++ Q  T V  D + G PL  AI++ D RA   V+++  + 
Sbjct: 59  LVAKAGVDP---SEIKAIGVSGQGPTVVPVDKD-GRPLRPAIIYMDRRAKEEVEELKERI 114

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
            +++   +    G P+   + A K+ W  +N       + E    F   ++++V+ LTG 
Sbjct: 115 GEEE---IFERTGNPLDSQYVAPKILWFKRN----EPEVWERTRKFLQSNSYIVYKLTGE 167

Query: 333 TCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN----NG 388
                D ++AS + L +I   +W   L     +P  +LP++    +I G V        G
Sbjct: 168 L--AVDHSSASGSGLYDIRKGEWSEELLDLLGIPEDLLPKLVRPGDIVGTVTEEAAEETG 225

Query: 389 LV--TTVAY----------------------QFG-----------PDATP-----IYALE 408
           L   T V                          G           P   P      + + 
Sbjct: 226 LPAGTPVVAGGADAAAAALGAGVVEPGDAMEMLGTSGVIIVVTDRPKFDPRLISSPHVVP 285

Query: 409 GSIAVAG------AAVKWLRDNL------NLMDNVRETESLAEKVMT-TGDVYFVPAFGG 455
           G+  + G      AA++W RDN         +D   E E  AEKV      + F+P   G
Sbjct: 286 GTYLLNGGMSTGGAALRWFRDNFGPEETEGGLDAYDELEEEAEKVPPGADGLLFLPYLAG 345

Query: 456 LYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
              P W  DARGV  G+T   T+ H+ RA LE + +  R ILE+ 
Sbjct: 346 ERTPIWDPDARGVFFGLTLGHTRAHLYRAVLEGVAYALRHILEIA 390

This subgroup is composed of uncharacterized bacterial and archaeal xylulose kinases-like proteins with similarity to bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 492

>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

 Score =  172 bits (437), Expect = 9e-48
 Identities = 108/401 (26%), Positives = 164/401 (40%), Gaps = 71/401 (17%)

Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
            ID GT +V+  +      E V +   +    +PQ GWAEQDP E+ QA+   + + +E+
Sbjct: 8   GIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE 67

Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
                +  D I  +GI+ Q    V+ D N GEPL  AI+W+DTRA   V+++  +     
Sbjct: 68  ---SKIDPDAIAAIGISGQGHGLVLLDAN-GEPLRPAILWNDTRAAEEVEELEERLG--- 120

Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSV-RRAIKENRCLFGTVDTWLVWNLTGRTCH 335
            + L    GL   P F+A KL WL +N   +  +A K        +  +L + LTG    
Sbjct: 121 GEALYARTGLQAMPGFTAPKLLWLKENEPDLFAKAAK-----ILLIKDYLRYRLTG--EF 173

Query: 336 VTDVTNASRTMLMNIDSLQWDPLLCKYFAVPP-TILPEIRSSSEIYGKV----------- 383
            T++++AS T L++I + +WD  L     +P   +LP +    E+ G +           
Sbjct: 174 ATEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPVVEPGEVLGTLTPEAAEELGLP 233

Query: 384 ---------HSNN------GLV----------TTVAY----------QFGPDATPIYALE 408
                      N       G V          T+               G   T    L 
Sbjct: 234 AGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATDKPLDDPRGSIYTFCLGLP 293

Query: 409 GSIAVAGA------AVKWLRDNLNLMDNVRETESLAEKVMT---TGDVYFVPAFGGLYAP 459
           G   V GA       ++WLR+   L ++  E    A  V        + F+P   G   P
Sbjct: 294 GWFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGP 353

Query: 460 YWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
           +    ARG   G+T   T+ H+ RA LE + F   D LE  
Sbjct: 354 HADPAARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEAL 394

Length = 502

>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  164 bits (417), Expect = 5e-45
 Identities = 54/102 (52%), Positives = 70/102 (68%)

Query: 24  PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 83
           PL+G ID+GT + RF + +A T E + SH ++I  I P+EGW EQDP EIL +V   +++
Sbjct: 1   PLVGAIDQGTSSTRFLVFNAKTAELLSSHQVEIKQIFPKEGWVEQDPKEILNSVYECIEK 60

Query: 84  AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
             +KL    +   DI  +GITNQRETTVVWD  TGEPLYNAI
Sbjct: 61  TCKKLKELNIDVSDIKAIGITNQRETTVVWDKYTGEPLYNAI 102

This subgroup corresponds to a group of metazoan glycerol kinases (GKs), coded by X chromosome-linked GK genes, and glycerol kinase (GK)-like proteins, coded by autosomal testis-specific GK-like genes (GK-like genes, GK1 and GK3). Sequence comparison shows that metazoan GKs and GK-like proteins in this family are closely related to the bacterial GKs, which catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). The metazoan GKs do have GK enzymatic activity. However, the GK-like metazoan proteins do not exhibit GK activity and their biological functions are not yet clear. Some of them lack important functional residues involved in the binding of ADP and Mg2+, which may result in the loss of GK catalytic function. Others that have conserved catalytic residues have lost their GK activity as well; the reason remains unclear. It has been suggested the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score =  161 bits (410), Expect = 4e-44
 Identities = 114/400 (28%), Positives = 169/400 (42%), Gaps = 70/400 (17%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
            IG ID GT +V+ ++++ L  E V   S + +T SP  GW+EQDP +   AVQ  ++  
Sbjct: 2   YIG-IDIGTSSVKASLVN-LDGELVAFASREYTTSSPHPGWSEQDPADWWDAVQRALEAL 59

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
              L   G S +DI  +G+T Q    V+ D   G  L  AI+W+DTR+     +V     
Sbjct: 60  ---LDQAGDSAEDIAAIGVTGQMHGAVLLD-QQGRVLRPAILWNDTRS---APEVTELKA 112

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
               +    I G   +P ++  KL WL +N   V R I     +    D ++   LTG  
Sbjct: 113 RLGAEIFS-ITGNIPTPGWTLPKLLWLKENEPEVFRRI---ARVLLPKD-YIRLRLTGE- 166

Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS----NNGL 389
              TD ++AS T+L +  S +W   LC  + +P  +LP +   SEI G V        GL
Sbjct: 167 -LATDRSDASGTLLFDAASREWSDDLCALYGIPEDLLPPLHEPSEIAGAVTPEAARKTGL 225

Query: 390 VT-------------------------------TVAYQFGPDATPIYALEGSI------- 411
                                            T          P+   +G++       
Sbjct: 226 KAGTPVVAGAGDNAAAALGAGVVDPGQASLSLGTSGVVAVVSEGPVPDPKGAVITFAHAV 285

Query: 412 ----------AVAGAAVKWLRDNLNLMD-NVRETESLAEKVMTTGD-VYFVPAFGGLYAP 459
                       AG+A++W RD L   D +  E   LA +V    + + F+P   G   P
Sbjct: 286 PGRWYQVTCTNSAGSALRWARDLLGPADVSYAEMAELAAQVPVGANGLLFLPYLNGERTP 345

Query: 460 YWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499
           Y   +ARG   G+T   T+GH+ RA LE + F  RD LE+
Sbjct: 346 YNDPNARGAFFGLTLSHTRGHLARAVLEGVAFSLRDCLEV 385

This subfamily is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. XKs do not have any known allosteric regulators, and they may have weak but significant activity in the absence of substrate. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score =  149 bits (379), Expect = 1e-39
 Identities = 107/409 (26%), Positives = 168/409 (41%), Gaps = 87/409 (21%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVV-SHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
            +G ID GT  V+  ++      EVV S S +     P+ GW+EQDP +  +A +  +  
Sbjct: 2   YLG-IDLGTSGVKALLVDE--DGEVVASASAEYPLSQPKPGWSEQDPEDWWEATKAAIRE 58

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
            + K    G++  ++  +G++ Q    V+ D   G+ L  AI+W+D R     +++  + 
Sbjct: 59  LLAK---SGIAGGEVRGIGLSGQMHGLVLLD-KDGKVLRPAILWNDQRTTAECEEITERV 114

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENR-CLFGTVDT------WL 325
             +    L  I G P  P F+A KL WL           +E+    F  +        +L
Sbjct: 115 GGE----LIEITGNPALPGFTAPKLLWL-----------REHEPENFAKIAKVLLPKDYL 159

Query: 326 VWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK--- 382
            + LTG     TDV++AS T+L+++    W   L     +   ILPE+  SSE+ G    
Sbjct: 160 RYRLTG--EIATDVSDASGTLLLDVAKRDWSDELLDALGIDRAILPELYESSEVTGTLTA 217

Query: 383 ------------------------------VHSNNGLVT--TVAYQFGPDATPIYALEGS 410
                                         V   +  V+  T    F    +P    EG 
Sbjct: 218 EAAAELGLPAGTPVVAGGGDNAAGAVGNGVVRPGDAFVSLGTSGVVFAVSDSPAPDPEGR 277

Query: 411 I-----AV------------AGAAVKWLRDNLNLMDNVRETESLAEKVMTTGD--VYFVP 451
           +     AV            AG ++KW RD     D+  E  + AE+V   G   + F+P
Sbjct: 278 VHTFCHAVPGRWYLMGVTLSAGGSLKWFRDTFGPDDSYEELLAEAEQV-PPGSEGLLFLP 336

Query: 452 AFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
              G   P+   +ARG   G+T   T+ H+ RA LE + F  RD LE+ 
Sbjct: 337 YLSGERTPHNDPNARGAFIGLTLSHTRAHLTRAVLEGVAFSLRDSLEIL 385

This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score =  136 bits (344), Expect = 3e-35
 Identities = 99/404 (24%), Positives = 152/404 (37%), Gaps = 83/404 (20%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           ++GV D GT + + A++       V   S      +P +G AEQDP EI  AV   +D  
Sbjct: 2   ILGV-DIGTTSTK-AVLFDEDGRIVAGVSKRYPLETPPDGAAEQDPDEIFDAVLEILDEV 59

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
           + K          I  +  ++   + +  D + GEPL   I W+DTRA    +++  +  
Sbjct: 60  VAKALG-----GRIAAVSFSSAMHSLIALDED-GEPLTPVITWADTRAAEYAEELKERLD 113

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
            ++  Y +   G P+ P +   KL WL +     R  +      F ++  ++++ L G  
Sbjct: 114 GRE-LYQR--TGCPLHPMYPLAKLLWLKEE----RPELFAKAAKFVSIKEYVLYRLFGE- 165

Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTV 393
             V D + AS T L+NI +L WD    +   +    LPE+  ++E         GL    
Sbjct: 166 -LVVDYSIASGTGLLNIHTLDWDEEALEIAGISEEQLPELVPTTEQLR------GLKAER 218

Query: 394 AYQFG-PDATPIYA---------------LEGSIA------------------------- 412
           A + G P+ TP                    G  A                         
Sbjct: 219 APKLGLPEDTPFVLGASDGALSNLGVGAVDPGVAAITIGTSGAIRVVLDQPVTDPPGRLF 278

Query: 413 ---------VAGAAV-------KWLRDNLNLMDNVRETESLAEKVMTTGD--VYFVPAFG 454
                    V G AV       +WLRD L L     E E L           + F+PA  
Sbjct: 279 CYRLDKGRWVLGGAVNNGGIVLRWLRDTLAL-PEEEEAEELGIDPYDGLTRGLEFLPAGA 337

Query: 455 GLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           G   P W    R  + G+T+      I  AA+E +  + R ILE
Sbjct: 338 GERFPPWLSGERAPLWGLTRAARGSFIGLAAMEGVAHRLRAILE 381

This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain. Length = 440

>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase

 Score =  134 bits (339), Expect = 3e-34
 Identities = 107/396 (27%), Positives = 161/396 (40%), Gaps = 70/396 (17%)

Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217
           ID GT  V+  ++     E + S S   + ISP  GW+EQDP +   A     + AI++L
Sbjct: 3   IDLGTSGVKALLVDE-QGEVIASGSAPHTVISPHPGWSEQDPEDWWDAT----EEAIKEL 57

Query: 218 SA-HGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
                    DI  +GI+ Q    V+ D N GE L  AI+W+DTR     +++ A+  D+ 
Sbjct: 58  LEQASEMGQDIKGIGISGQMHGLVLLDAN-GEVLRPAILWNDTRTAQECEELEAELGDER 116

Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
              +  I G    P F+A KL W+ ++   V   I +          +L + LTG   +V
Sbjct: 117 ---VLEITGNLALPGFTAPKLLWVRKHEPEVFARIAK----VMLPKDYLRYRLTG--EYV 167

Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK----VHSNNGLVTT 392
           T+ ++AS T   ++    W   L     +P + LPE+  SSE  G     V +  GL   
Sbjct: 168 TEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLGLSAG 227

Query: 393 V-----------------------------------AYQFGPDATPIYALEG-------- 409
           V                                   A    P   P  A+ G        
Sbjct: 228 VPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHALPGG 287

Query: 410 --SIAV---AGAAVKWLRDNLNLMDNVRETESLAEKV-MTTGDVYFVPAFGGLYAPYWRK 463
              + V   A ++++W R+     D V     LAE+       V F+P   G   P+   
Sbjct: 288 WLPMGVTLSATSSLEWFRELFGKED-VEALNELAEQSPPGAEGVTFLPYLNGERTPHLDP 346

Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499
            ARG   G+T  TT+  + RA LE + F  RD L++
Sbjct: 347 QARGSFIGLTHNTTRADLTRAVLEGVTFALRDSLDI 382

This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481

>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases

 Score =  131 bits (331), Expect = 5e-33
 Identities = 89/418 (21%), Positives = 145/418 (34%), Gaps = 90/418 (21%)

Query: 158 IDEGTRTVRFAIISA---LTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           ID GT  V+ A++S    L      ++           G AEQDP +   AV     R +
Sbjct: 5   IDLGTSGVKAALVSPDGRLVASATEAYETHY----LPGGGAEQDPEDWWDAVVRATRRLL 60

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
           E     G++   +  +  + Q +  V  D   G PL  AI+W D RA    ++++     
Sbjct: 61  ED---SGVNPRRVAGISFSGQMQGVVPVD-EDGRPLRPAIIWMDQRAAPEAERLMEGLGK 116

Query: 275 QDK------DYLKPICGLPVSPYFSALKLSWLIQNVSSV-RRAIKENRCLFGTVDTWLVW 327
                     +L+   G P S      K+ WL  N   V  +  K     F     +L  
Sbjct: 117 VAGYGLKLLKWLRLTGGAPKSGKDPLAKILWLRDNEPDVYAKTYK-----FLDAKDYLNL 171

Query: 328 NLTGRTCHVTDVTNASRTMLMNI--DSLQWDPLLCKYFAVPP--------------TILP 371
            LTGR    TD  +AS T L +     ++W   L     +                T+LP
Sbjct: 172 RLTGR--FATDPDDASLTWLTDNRDGRIRWSEELLAAAGIDREKLPELVPSTDVVGTVLP 229

Query: 372 EIR------------------SSSEI----------YGKVHSNNGLVTTVAYQFGPD--- 400
           E                    S++ +          +  + +++ + T V +        
Sbjct: 230 EAARELGLPEGTPVVAGGGDASAAAVGAGAVADGDAHLYLGTSSWIATHVPFPKTDVRHR 289

Query: 401 ----ATPI---YALEGSIAVAGAAVKWLRDNL----------NLMDNVRETESLAEKVMT 443
                  I   Y +      AG A++WL+D L                   + LA     
Sbjct: 290 IFSLPHAIPGKYLVVAEQETAGGALEWLKDLLLQDEDGLADEEGRSVYERLDELAASAPP 349

Query: 444 -TGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
            +  + F+P   G  +P    +ARG    ++  TT+  ++RA LE +    R +LE  
Sbjct: 350 GSNGLIFLPWLHGERSPVEDPNARGGFFNLSLETTRADLLRAVLEGVALNLRWLLEAV 407

This subgroup is composed of uncharacterized proteins with similarity to bacterial D-Xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 514

>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase

 Score =  128 bits (324), Expect = 3e-32
 Identities = 47/102 (46%), Positives = 61/102 (59%), Gaps = 4/102 (3%)

Query: 24  PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 83
           P I  ID+GT + R  +        V  H  + + I P+ GW E DPMEI ++V + +  
Sbjct: 1   PYILAIDQGTTSSRAIVFDK-DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAE 59

Query: 84  AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
           A+ K    G+  DDI  +GITNQRETTVVWD  TG+PLYNAI
Sbjct: 60  ALAKA---GIKPDDIAAIGITNQRETTVVWDKATGKPLYNAI 98

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases [Energy metabolism, Other]. Length = 493

>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score =  126 bits (320), Expect = 1e-31
 Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
            I  ID+GT + RF II     E V SH ++   I PQ GW E DP EI   V   ++ A
Sbjct: 1   YILAIDQGTTSTRF-IIFDRDGEVVSSHQVEHEQIYPQPGWVEHDPEEIWANVVQCIEEA 59

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
           ++KL    +S + I  +GITNQRETTV WD  TG+PLYNAI
Sbjct: 60  LKKL---RISPEQIKAIGITNQRETTVAWDKETGKPLYNAI 97

This subfamily includes glycerol kinases (GK; EC 2.7.1.30) and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Human GK deficiency, called hyperglycerolemia, is an X-linked recessive trait associated with psychomotor retardation, osteoporosis, spasticity, esotropia, and bone fractures. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of GKs is created only by a substrate-induced conformational change. Based on sequence similarity, some GK-like proteins from metazoa, which have lost their GK enzymatic activity, are also included in this CD. Members in this subfamily belong to the FGGY family of carbohydrate kinases. Length = 484

>gnl|CDD|212666 cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score =  124 bits (313), Expect = 7e-31
 Identities = 91/409 (22%), Positives = 152/409 (37%), Gaps = 80/409 (19%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           L+G ID GT TV  A++  L   E+   S    T++PQ G+ EQD  E+ +AV   +   
Sbjct: 2   LLG-IDAGT-TVTKAVLFDLDGREIAVASRRNPTLTPQPGYVEQDMDELWEAVAAVIREL 59

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
           +EK    G+  +DI  +G+T Q +   + D   G+P+   I+  D+RA  +V++      
Sbjct: 60  LEKA---GVDAEDIAGIGVTGQGDGLWLVD-KEGKPVGPGILSLDSRAAELVERWQEDGT 115

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKEN-RCLFGTVDTWLVWNLTGR 332
           +     +  + G  +     +  L+WL ++              +    D W+ + LTG 
Sbjct: 116 EDA---IFELTGQGLWAGQPSSLLAWLKEH----EPERLARAGTVLFCKD-WIRFRLTGE 167

Query: 333 TCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTI--LPEIRSSSEIYGKVHSN---- 386
               TD T+AS + L+++ + Q+D  L     +      LP I  S++I G + +     
Sbjct: 168 AA--TDPTDASGSSLLDLRTGQYDDELLDLLGLEEIRDLLPPIVDSADIVGTLTAEAAAL 225

Query: 387 ----------NGLVTTVAYQFG---------------------------PDATP----IY 405
                      GL   VA   G                           P+A P    +Y
Sbjct: 226 TGLPAGTPVVGGLFDVVACALGSGLVDEGDLCSIAGTWSINEVLSDDPVPEAEPFGYSLY 285

Query: 406 ALEG-----SIAVAGAA-VKWLRDNL--------NLMDNVRETESLAEKVMTTGDVYFVP 451
              G       +   A+ + W    L        +          L          Y   
Sbjct: 286 LPPGYYLVEESSPTSASNLDWFLRTLLEDEAAKASGGSLYALLNRLVAAAPPEYHPYLFE 345

Query: 452 AFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
            F  L       +AR    G++ + T+  ++RA  E + F  RD LE  
Sbjct: 346 PF--LRGSNVDPNARAGFFGLSAWHTRADLVRAVYEGVAFAHRDHLEAL 392

This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 447

>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  121 bits (306), Expect = 7e-30
 Identities = 50/103 (48%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 23  VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 82
            PL+G ID+GT + RF + +   Q  V SH ++ S I P  GW E DP EI+ +V   + 
Sbjct: 1   TPLVGSIDQGTTSTRFILFNRDGQP-VASHQIEFSQIYPHPGWHEHDPEEIVSSVVQCIA 59

Query: 83  RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
            A++ L   G S+ D+  +GITNQRETTVVWD  TG+PLYNAI
Sbjct: 60  SALKSLETSGFSKYDVKVIGITNQRETTVVWDRETGKPLYNAI 102

This subgroup corresponds to a small group of fungal glycerol kinases (GK), including Saccharomyces cerevisiae Gut1p/YHL032Cp, which phosphorylates glycerol to glycerol-3-phosphate in the cytosol. Glycerol utilization has been considered as the sole source of carbon and energy in S. cerevisiae, and is mediated by glycerol kinase and glycerol 3-phosphate dehydrogenase, which is encoded by the GUT2 gene. Members in this family show high similarity to their prokaryotic and eukaryotic homologs. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 496

>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY family of carbohydrate kinases

 Score =  117 bits (296), Expect = 9e-29
 Identities = 93/404 (23%), Positives = 152/404 (37%), Gaps = 90/404 (22%)

Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
            ID GT   +  +        +             +G    DP E+ +A++  + +A+  
Sbjct: 4   GIDVGTTNTKVVVFD-DDGTIIAIRKFKTPKNV-SDGGPYFDPDELWRAIEKVICQALAA 61

Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
                 + D I  + IT+  E+ V+ D + GEPLY AI W D R +   +++  + P   
Sbjct: 62  ------APDPIAAISITSVGESGVLVDAD-GEPLYPAIAWYDRRTEEEAEELRKQDP--- 111

Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWL------VWNLT 330
              +  I GLP  P +S  K+ WL ++   V +              WL      ++ LT
Sbjct: 112 GLAIYEITGLPPDPIYSLFKILWLREHRPEVWKR----------AYKWLHIPDYILFRLT 161

Query: 331 GRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYF-----AVPP-----TILPEIRSSS--- 377
           GR   VTD T ASRT+L +I + +W   L + F     A+P      TI+ E+   +   
Sbjct: 162 GRP--VTDFTLASRTLLFDIRAREWSEELLEMFGIPPDALPELVPSGTIIGEVSKDAAES 219

Query: 378 -----------------------------EIYGKVHSNNGLVTTVAYQFGPDATP----- 403
                                        +I   + +   L+   + +     T      
Sbjct: 220 LGLSTGTPVVLGGHDHPVGSYAAGVIDPGDILDSMGTAEALLAIASAKLKETLTREGVAF 279

Query: 404 -------IYALEGSIAVAGAAVKWLRDNLNLMDN-VRETESLAEKVMTTGDVYFVPAFGG 455
                   Y L   +   G A++WLR+ L    +  R  E L +         F P   G
Sbjct: 280 GVYAEPDRYYLIAGLPSGGFAIEWLRNILGGEASSKRAQEKLLDSA-----ALFYPYSRG 334

Query: 456 LYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499
             +P   + A G   G+T  T++  I R+ LE + F+ R  LE 
Sbjct: 335 SGSPIRSEIAGGAFYGLTDTTSQEDITRSVLEGLTFEARSTLEC 378

This subfamily is composed of uncharacterized carbohydrate kinases. They are sequence homologous to bacterial glycerol kinase and have been classified as members of the FGGY family of carbohydrate kinases. The monomers of FGGY proteins contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 430

>gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional

 Score =  114 bits (287), Expect = 3e-27
 Identities = 51/103 (49%), Positives = 61/103 (59%), Gaps = 2/103 (1%)

Query: 23  VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 82
           +  IG ID+GT + RF II       V SH +    I+P  GW E DP EIL+ V   M+
Sbjct: 1   MKYIGSIDQGTTSTRF-IIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMN 59

Query: 83  RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
            AI+KL   G S   I  +GITNQRET V WD  TG+PLYNAI
Sbjct: 60  EAIKKLREKGPSFK-IKAIGITNQRETVVAWDKVTGKPLYNAI 101

Length = 504

>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional

 Score =  113 bits (285), Expect = 6e-27
 Identities = 45/100 (45%), Positives = 57/100 (57%), Gaps = 4/100 (4%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
           I  +D+GT + R AII       V     + + I PQ GW E DP EI  +  + +  A 
Sbjct: 7   ILALDQGTTSSR-AIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEA- 64

Query: 86  EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
             L+  G+S D I  +GITNQRETTVVWD  TG P+YNAI
Sbjct: 65  --LAKAGISPDQIAAIGITNQRETTVVWDKETGRPIYNAI 102

Length = 498

>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion]

 Score =  113 bits (284), Expect = 7e-27
 Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 4/106 (3%)

Query: 20  QTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQT 79
                 I  ID+GT + R  +        V     + + I PQ GW E DP+EI  +V++
Sbjct: 1   MLADKYILAIDQGTTSSRAIVFDE-DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRS 59

Query: 80  TMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
            +  A+ K    G+   +I  +GITNQRETTVVWD  TG+P+YNAI
Sbjct: 60  VLKEALAKA---GIKPGEIAAIGITNQRETTVVWDKETGKPIYNAI 102

Length = 499

>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase

 Score =  112 bits (282), Expect = 1e-26
 Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 2/102 (1%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
            +G ID+GT + RF II       V SH ++ + I PQ GW E DPMEIL++V T + +A
Sbjct: 1   FVGAIDQGTTSTRF-IIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKA 59

Query: 85  IEKLSAHGLSRDD-IVTLGITNQRETTVVWDLNTGEPLYNAI 125
           +EK +A G + D  +  +GITNQRETTV W  +TG PLYNAI
Sbjct: 60  LEKAAAKGHNVDSGLKAIGITNQRETTVAWSKSTGRPLYNAI 101

Length = 512

>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  112 bits (283), Expect = 1e-26
 Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
            I  ID+GT + R AI+       V     + + I P+ GW E DP EI ++       A
Sbjct: 1   YILAIDQGTTSSR-AILFDHDGNIVAVAQREFTQIYPKPGWVEHDPEEIWESQLAVAREA 59

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
           + K    G+   DI  +GITNQRETTVVWD  TG+P+YNAI
Sbjct: 60  LAK---AGIRASDIAAIGITNQRETTVVWDRETGKPVYNAI 97

This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 486

>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  107 bits (269), Expect = 5e-25
 Identities = 54/107 (50%), Positives = 68/107 (63%), Gaps = 2/107 (1%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
            IG ID+GT + RF II     + V SH ++ + I PQ GW E DPMEIL+ V+  M+ A
Sbjct: 1   YIGSIDQGTTSTRF-IIYDTAAKVVASHQVEFTQIYPQAGWVEHDPMEILETVKKCMEGA 59

Query: 85  IEKLSAHGLSRDD-IVTLGITNQRETTVVWDLNTGEPLYNAIDKMPS 130
           + K  A GL   D +  +GITNQRETTVVW  +TG PLYNAI  M +
Sbjct: 60  LAKAKAKGLDVLDGLKAIGITNQRETTVVWSRSTGLPLYNAIVWMDA 106

This subgroup includes Arabidopsis NHO1 (also known as NONHOST1, or noh-host resistant 1) and other putative plant glycerol kinases, which share strong homology with glycerol kinases from bacteria, fungi, and animals. Nonhost resistance of plants refers to the phenomenon observed when all members of a plant species are typically resistant to a specific parasite. NHO1 is required for nonspecific resistance to nonhost Pseudomonas bacteria, it is also required for resistance to the fungal pathogen Botrytis cinerea. This subgroup belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 503

>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal domain

 Score =  100 bits (250), Expect = 2e-24
 Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 393 VAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRET---ESLAEKVM-----TT 444
           V   +  +    + LEG  + AG+ + WL   L   + +R+    ESLA  +        
Sbjct: 25  VWGPYTNE--GGWGLEGGQSAAGSLLGWLLQTLRAREELRDAGLVESLALLLALAADAPA 82

Query: 445 GDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           G + F+P F G  AP     ARG I G++  TT  ++ RA LE +    R ILE
Sbjct: 83  GGLLFLPDFSGERAPGADPHARGAITGLSSPTTLANLYRALLEGLALALRQILE 136

This domain adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain. Length = 193

>gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp

 Score = 99.0 bits (247), Expect = 4e-22
 Identities = 41/100 (41%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
           +  ID+GT + R  +        V     +   I P+ GW E DP EI +  +  +  A 
Sbjct: 2   VAAIDQGTTSTRCIVFDH-HGRIVSVAQKEHRQIFPRPGWVEHDPEEIWENTRRVISGA- 59

Query: 86  EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
             L+  GL+ +DI  +GITNQRETTVVWD  TG P+YNAI
Sbjct: 60  --LAKAGLTPEDIAAVGITNQRETTVVWDRATGRPVYNAI 97

glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup corresponds to a small group of bacterial glycerol kinases (GK) with similarity to Cellulomonas sp. glycerol kinase (CsGK). CsGK might exist as a dimer. Its monomer is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The regulation of the catalytic activity of this group has not yet been examined. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 495

>gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal domain

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 7/102 (6%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
            +  ID GT + +  + +    + V S S   + ISP+ GWAEQDP EI QA+     +A
Sbjct: 1   YVLGIDCGTTSTKAIVFNK-QGKVVASASAPYALISPKPGWAEQDPEEIWQALA----QA 55

Query: 85  IEK-LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
           I K L   G+S   I  +GI+ Q    V+ D N  +PLY AI
Sbjct: 56  IRKILQQSGISPKQIKGIGISGQGHGLVLLDKN-DKPLYPAI 96

This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain. Length = 245

>gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the glycerol kinases subfamily of the FGGY family of carbohydrate kinases

 Score = 87.4 bits (217), Expect = 2e-18
 Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 59  ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 118
           I P+ GW E DP EI +     +   +E+    G+   +I  LGITNQRETTV WD  TG
Sbjct: 34  IYPENGWVEHDPEEIYENTLQAVKDLLEE---FGIDPAEIEGLGITNQRETTVAWDKRTG 90

Query: 119 EPLYNAI 125
           +PLYNAI
Sbjct: 91  KPLYNAI 97

This subgroup contains uncharacterized bacterial proteins belonging to the glycerol kinase subfamily of the FGGY family of carbohydrate kinases. The glycerol kinase subfamily includes glycerol kinases (GK; EC 2.7.1.30), and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 487

>gnl|CDD|198377 cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup 3; members of the FGGY family of carbohydrate kinases

 Score = 84.9 bits (210), Expect = 2e-17
 Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 20/262 (7%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           LI  ID GT + R A++         +   +     PQ GW+EQ P++  Q     +   
Sbjct: 1   LILAIDVGTGSTRAALVRIDGAIVAFAAR-EHEQTVPQFGWSEQRPLDWWQGACDCIREV 59

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
           + ++     + + I  +G   Q   TV+ D         A +W+D R    VD   A+  
Sbjct: 60  LARVPG---AAERIAVIGACGQMHGTVLLDDAGELTRDTAPLWNDKRTQPQVDAFEAR-- 114

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQN-VSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
           +  + YL      P +P + A KL+W  +N   +  R  K    +    D ++ + LTG 
Sbjct: 115 NGWEKYL-AHLANPPAPAWPAFKLAWWRENDPQAYSRLAK----VLMPKD-YINFMLTGA 168

Query: 333 TCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTT 392
               TD T AS + LM+  +  W    C+   +   +LP +R   +I G+V      +T 
Sbjct: 169 M--ATDRTEASCSFLMDPATRSWSSQACETMGLDVDLLPPLRLPLDIIGQVTQPAADLTG 226

Query: 393 VAYQFGPDATPIYALEGSIAVA 414
           +     P   P+       A+A
Sbjct: 227 L-----PAGIPVLVGASDYAMA 243

This subgroup is composed of proteobacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17). They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 493

>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases

 Score = 84.7 bits (210), Expect = 2e-17
 Identities = 87/405 (21%), Positives = 151/405 (37%), Gaps = 85/405 (20%)

Query: 158 IDEGTRTVRFAIISALTQEEVVSH---SMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           +D GT++ +  I+      EV++      ++  IS   G  EQ P   + A+     +A+
Sbjct: 5   VDCGTQSTK-VIVLDAETGEVLAEGSAPHEL--ISGSNGRREQQPQWWIDALVEAFRQAL 61

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
                 G+   ++  +G++ Q+   V  D   GE L  A +W DT       +++ K   
Sbjct: 62  ADA---GIDPKEVRAIGVSGQQHGLVPLD-AQGEVLRPAKLWCDTETAPENAELIEKL-G 116

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTV----DTWLVWNLT 330
             K +++ + G      ++A KL WL ++       I        T+    D +L + LT
Sbjct: 117 GAKAWIERL-GNAPLTGYTASKLLWLKEHEPENFAKIA-------TILLPHD-YLNFWLT 167

Query: 331 GRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFA---VPPTILPEIRSSSEIYGKVHS-- 385
           GR    T+  +AS T   ++ + +W   +             LP + S  E  G V    
Sbjct: 168 GRYV--TEYGDASGTGYFDVRTREWSEEVLDAIDPALDLADALPTLLSPDEPAGTVRPEA 225

Query: 386 -----------------------------NNGLVT----TVAYQFGPDATPIYALEGSIA 412
                                          G+VT    T    +     P+   +G +A
Sbjct: 226 AEALGLSGDVLVASGGGDNMMGAIGTGNVKPGVVTMSLGTSGTLYAYSDKPVVDPQGEVA 285

Query: 413 -VAGAAVKWL---------------RDNLNLMDNVRETESLAEKV-MTTGDVYFVPAFGG 455
               +   WL               R+ L L  ++ E  +LA +       +  +P F G
Sbjct: 286 GFCSSTGGWLPLICTMNVTVATEQVRNLLGL--DIEELNALAAQAPPGAEGLTLLPFFNG 343

Query: 456 LYAPYWRKDARGVICGMTQF-TTKGHIIRAALEAICFQTRDILEL 499
              P    +ARG + G+T   TT+ ++ RAA+E   F  R  L+L
Sbjct: 344 ERTPN-LPNARGSLHGLTSANTTRANLARAAVEGATFGLRYGLDL 387

This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 487

>gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins

 Score = 83.4 bits (207), Expect = 4e-17
 Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 24/233 (10%)

Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTI-SPQEGWAEQDPMEILQAVQTTMDRAIEK 216
           ID GT++VR A++       V    + I    SP+ GWAEQDP    QA+        E+
Sbjct: 5   IDCGTQSVR-ALLFDRQGNLVAKGQVPIEPYYSPKPGWAEQDPDYYWQALCEACRELWEQ 63

Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
                +    I  + +T QRET V+ D + G+PL  AI+W D RA    +Q+        
Sbjct: 64  ---IPVDPGRIAGVALTTQRETFVLLDKD-GKPLRPAILWLDQRA---AEQLPP--LAWW 114

Query: 277 KDYLKPICGLPVS--PYFSALKLSWLIQNVSSV-RRAIKENRCLFGTVDTWLVWNLTGRT 333
              L  + G P +     +  K +W+ +N   +  +  K     F  +  +L + LTGR 
Sbjct: 115 IRLLFKLIGKPETIDVIPAEAKANWIRENEPEIWAKTAK-----FLLLSGYLTYKLTGR- 168

Query: 334 CHVTDVTNASRTMLMNIDSLQW-DPLLCKY--FAVPPTILPEIRSSSEIYGKV 383
             V  V +    +  +    +W      K+  F + P  LPE+    ++ G +
Sbjct: 169 -FVDSVASQVGYIPFDYKKRRWAKKEDLKWQGFPIEPEQLPELVPPGKLIGTI 220

This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 488

>gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type

 Score = 83.4 bits (206), Expect = 5e-17
 Identities = 95/400 (23%), Positives = 154/400 (38%), Gaps = 78/400 (19%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           +IGV D GT + + A++     + V   S+     +P  G AE++P EI +AV  T+   
Sbjct: 2   MIGV-DIGTTSTK-AVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREV 59

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
              L       D+I+ +  + Q  + + +D N  +PL   I W+D RA    +Q+     
Sbjct: 60  SINLE----DEDEILFVSFSTQMHSLIAFDENW-QPLTRLITWADNRAVKYAEQIKE--- 111

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
            ++   +    G P+ P     K+ WL     +    I +    +  +  ++   L G  
Sbjct: 112 SKNGFDIYRRTGTPIHPMAPLSKIIWL----EAEHPDIYQKAAKYLEIKGYIFQRLFGT- 166

Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEI-------YGK---- 382
            +  D + AS T + N+  L WD    +   +  + LP++  ++EI       Y K    
Sbjct: 167 -YKIDYSTASATGMFNLFELDWDKEALELTGIKESQLPKLVPTTEIEENLPHEYAKKMGI 225

Query: 383 -------------VHSN-----------------NGLVTTVAYQFGPDA---TPIYALEG 409
                        V SN                 +G + TV  +   D       YAL  
Sbjct: 226 QSSTPFVIGASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVIDKPKTDEKGRIFCYALTK 285

Query: 410 SIAVAGAAV-------KWLRDNL----------NLMDNVRETESLAEKVMTTGD-VYFVP 451
              V G  V       +W RD +            +D       +A +V    D + F P
Sbjct: 286 EHWVIGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHP 345

Query: 452 AFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICF 491
              G  AP W  +ARG   G+T    K H+IRAALE + +
Sbjct: 346 YLAGERAPLWNANARGSFFGLTYSHKKEHMIRAALEGVIY 385

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway [Energy metabolism, Sugars]. Length = 505

>gnl|CDD|198376 cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup 2; members of the FGGY family of carbohydrate kinases

 Score = 77.1 bits (190), Expect = 5e-15
 Identities = 67/265 (25%), Positives = 111/265 (41%), Gaps = 45/265 (16%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHS-----MDISTISPQEGWAEQDPMEILQAVQT 208
            +G  D G+ +++ A++ A T + + S S     M+I  +SPQ GWAEQDP         
Sbjct: 2   FLG-YDIGSSSIKAALVDAETGKSLASVSYPEQEMEI--LSPQPGWAEQDPEIWWDYTCA 58

Query: 209 TMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQV 268
              + I +         +I  +GI+ Q    V+ D   G  L  AI+W D+RA   V   
Sbjct: 59  ATKQLINQGKEDL---SNIQAIGISYQMHGLVLVDKQ-GNVLRPAIIWCDSRA---VSIG 111

Query: 269 LAKFPDQDKDY-LKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRC-LFGTVDT--- 323
              F +  +D+ L  +   P +  F+A KL+W           +KEN   +F  +     
Sbjct: 112 EKAFQELGEDFCLSHLLNSPGN--FTASKLAW-----------VKENEPEVFDRIAKIML 158

Query: 324 ---WLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIY 380
              ++   LTG     T  +  S  ML +    +    L +Y  +  +++P+I  +    
Sbjct: 159 PGDYIAMKLTGEVT--TTKSGLSEGMLWDFKKNEVAVELLEYLGLDRSLIPDIVPNFSEQ 216

Query: 381 GKVHSNNGLVTTVAYQFG-PDATPI 404
           G V S       +A + G  +  PI
Sbjct: 217 GTVTS------EIAAELGLSEGIPI 235

This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17). They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 490

>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 6/97 (6%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
            I  IDEGT   + A++       V S S  +    PQ GW EQD   I  AVQ    +A
Sbjct: 1   FILAIDEGTTNAK-AVLVDRDGTVVASGSAPVGIQYPQPGWVEQDAEAIWAAVQ----QA 55

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL 121
           I    A G+   ++  + I+NQRE+ V+WD  TG PL
Sbjct: 56  IADCLA-GVLAAEVAAIAISNQRESVVIWDRQTGAPL 91

This subgroup corresponds to a group of putative bacterial glycerol kinases (GK), which may be coded by the GK-like gene, GK2. Sequence comparison shows members in this CD are homologs of Escherichia coli GK. They retain all functionally important residues, and may catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a subfamily of the FGGY family of carbohydrate kinases

 Score = 75.0 bits (185), Expect = 2e-14
 Identities = 60/267 (22%), Positives = 102/267 (38%), Gaps = 45/267 (16%)

Query: 158 IDEGTRTVRFAIISALTQEEV----VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           ID GT +V+  ++ + T+E +       S ++ +  P     EQD  +IL     T+D  
Sbjct: 6   IDIGTTSVKACLLDSETKEVLASQSKPTSANVPSDGPLGS--EQDVDKILS----TLDSC 59

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWD-----------LNTGEPLYNAIVWSDTRAD 262
           +++L    L    +  +G+T Q    V+W              T  P+ N   W D R  
Sbjct: 60  LKRLPKELLK--KVKAIGVTGQMHGIVLWKQDQSCEDGDLISITNTPVSNLYTWQDGRCS 117

Query: 263 NIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVD 322
              +  L   P       KP   LP+   F    L WL +N         E+    GT+ 
Sbjct: 118 ---EDFLKSLP-------KPQSHLPIHTGFGCATLFWLQKN----GPEFLESFDHCGTIQ 163

Query: 323 TWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK 382
            ++V  L G +  V    NA+     ++++  W+  + +    P  +LPE+     I G 
Sbjct: 164 DFVVAMLCGLSRPVMSPHNAASWGYFDLETNAWNSEILQAAGFPVHLLPEVVPPGTIAGT 223

Query: 383 VHSNNGLVTTVAYQFGPDATPIYALEG 409
           +  +        +   P  TP+    G
Sbjct: 224 LGGD--------WYGIPKGTPVGVALG 242

This subfamily is predominantly composed of uncharacterized bacterial and eukaryotic proteins with similarity to human sedoheptulokinase (SHK, also known as D-altro-heptulose or heptulokinase, EC 2.7.1.14) encoded by the carbohydrate kinase-like (CARKL/SHPK) gene. SHK catalyzes the ATP-dependent phosphorylation of sedoheptulose to produce sedoheptulose 7-phosphate and ADP. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448

>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases

 Score = 73.5 bits (181), Expect = 6e-14
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
           I  +D GT +V+  +        +   S +     P+ GW EQDP EI QA+   +  A 
Sbjct: 2   ILGLDVGTTSVKAVLFD-EQGNILAEASREYEVSYPKPGWVEQDPEEIWQALCEVLREAA 60

Query: 86  EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
            + S        I  +G+++Q E  ++ D N G PL  AI
Sbjct: 61  AQASGG-----QIAAIGVSSQGEGVILVDAN-GRPLTPAI 94

This family is predominantly composed of glycerol kinase (GK) and similar carbohydrate kinases including rhamnulokinase (RhuK), xylulokinase (XK), gluconokinase (GntK), ribulokinase (RBK), and fuculokinase (FK). These enzymes catalyze the transfer of a phosphate group, usually from ATP, to their carbohydrate substrates. The monomer of FGGY proteins contains two large domains, which are separated by a deep cleft that forms the active site. One domain is primarily involved in sugar substrate binding, and the other is mainly responsible for ATP binding. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Substrate-induced conformational changes and a divalent cation may be required for the catalytic activity. Length = 435

>gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 65/233 (27%), Positives = 91/233 (39%), Gaps = 20/233 (8%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQE-GWAEQDPMEILQAVQTTMDRA 213
           IGV D GT +VR A +  L   E+ S S       P   GWAEQDP +   AV+T +  A
Sbjct: 4   IGV-DVGTESVR-AGVFDLNGRELASASRPYPVPVPYGAGWAEQDPEDWWPAVRTAVRAA 61

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
           +   +A G+  D +  LG+     T V  D   G+PL  A++W D RA +  + +     
Sbjct: 62  V---AAAGVDPDQVAALGVDATSCTVVPLDAE-GQPLTPALLWDDHRAADQANAINEVGG 117

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
               DY     G  VSP +   K+ WL+Q                   D WL W LTG+ 
Sbjct: 118 PALWDYG----GKIVSPEWMLPKVLWLLQEAPDTWNRA---DHFLEAPD-WLGWRLTGKR 169

Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPP---TILPEIRSSSEIYGKV 383
              T    A           +W   +      P      LP + +     G +
Sbjct: 170 PVATCSAVAKWGYDAREG--EWANSVFDKLGDPRLTAAKLPAVVAPLTRAGGL 220

This subfamily is composed of ribulokinases (RBKs) and similar proteins from bacteria and eukaryota. RBKs catalyze the MgATP-dependent phosphorylation of a variety of sugar substrates including L- and/or D-ribulose. Members of this subfamily contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 465

>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMD-ISTISPQEGWAEQDPMEILQAVQTTMDRA 84
           +  +D GT T+R  I     Q EVV  S D I  + P+ G+ E DP ++   +   +  A
Sbjct: 2   VLALDVGTTTIRCFIYDR--QAEVVGSSYDKIELLYPEPGYVEIDPDKLWTQIVGVIKEA 59

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
           ++      L+   I  LGI+ QR + + W+ +TG+P +N I
Sbjct: 60  VKD---ANLTAKQIAGLGISTQRGSFLTWNKSTGKPYHNFI 97

This subgroup corresponds to a group of metazoan putative glycerol kinases (GK), which may be coded by the GK-like gene, GK5. Sequence comparison shows members of this group are homologs of bacterial GKs, and they retain all functionally important residues. However, GK-like proteins in this family do not have detectable GK activity. The reason remains unclear. It has been suggested tha the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 51/240 (21%), Positives = 89/240 (37%), Gaps = 38/240 (15%)

Query: 157 VIDEGTRTVRFAIIS------ALTQEEV-------VSHSMDISTISPQEGWAEQDPMEIL 203
             D GT +VR  I        A++QEE           SMD     PQ  W         
Sbjct: 4   AFDAGTGSVRAVIFDLTGNQIAVSQEEWEHLAEPRYPGSMDFD---PQVNW--------- 51

Query: 204 QAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADN 263
              +       + L+  G++  DI  +  T+ RE  V++D   G  ++ A    D RA  
Sbjct: 52  ---KLVCRCIRQALARSGIAPIDIAAVSATSMREGIVLYD-QNGNEIW-ACANVDARAAE 106

Query: 264 IVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDT 323
            V ++    PD +K+  +           +  +L WL Q+   +             +  
Sbjct: 107 EVRELKEWEPDLEKEIYRSSGQTFA--LGALPRLLWLKQHRPDIYEKTAS----VTMISD 160

Query: 324 WLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV 383
           W+++ L+G      + +NA  T L ++ +  W P +     +   I P +  +  + G V
Sbjct: 161 WILYKLSGVL--AVEPSNAGTTGLFDLKTRDWSPEMLDIVGLRDDIFPPVVETGTVIGTV 218

This subfamily is composed of bacterial autoinducer-2 (AI-2) kinases and similar proteins. AI-2 is a small chemical quorum-sensing signal involved in interspecies communication in bacteria. Cytoplasmic autoinducer-2 kinase, encoded by the lsrK gene from Salmonella enterica serovar Typhimurium lsr (luxS regulated) operon, is the prototypical member of this subfamily. AI-2 kinase catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, which leads to the inactivation of lsrR, the repressor of the lsr operon. Members of this family are homologs of glycerol kinase-like proteins and belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 452

>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 28  VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87
            ID GT +V+  +      E V +   +    +PQ GWAEQDP E+ QA+   + + +E+
Sbjct: 8   GIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE 67

Query: 88  LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAID 126
                +  D I  +GI+ Q    V+ D N GEPL  AI 
Sbjct: 68  ---SKIDPDAIAAIGISGQGHGLVLLDAN-GEPLRPAIL 102

Length = 502

>gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 64.5 bits (157), Expect = 5e-11
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 12/100 (12%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
           I  ID+GT + R  +     +  ++  ++      P  GW E DP+E+L  ++       
Sbjct: 3   IAAIDQGTTSTRVLVAGEDGKAFIL-LALRHKQHYPNPGWVEHDPLELLANLRAC----- 56

Query: 86  EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
             L A G     +  +G+ NQ E+ + WD  +GEPL   I
Sbjct: 57  --LEAAG----VVDAIGLANQGESCLAWDARSGEPLSPVI 90

This subgroup corresponds to a small group of proteobacterial glycerol kinase (GK)-like proteins, including the glycerol kinase from Pseudomonas aeruginosa. Most bacteria, such as Escherichia coli, take up glycerol passively by facilitated diffusion. In contrast, P. aeruginosa may also utilize a binding protein-dependent active transport system to mediate glycerol transportation. The glycerol kinase subsequently phosphorylates the intracellular glycerol to glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 470

>gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional

 Score = 62.7 bits (152), Expect = 2e-10
 Identities = 81/302 (26%), Positives = 129/302 (42%), Gaps = 36/302 (11%)

Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217
           ID GT  V+  I+     E V S +  ++   P   W+EQDP +  QA     DRA++ L
Sbjct: 5   IDLGTSGVK-VILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQAT----DRAMKAL 59

Query: 218 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDK 277
                S  D+  LGI  Q     + D      L  AI+W+D R       + A+ P    
Sbjct: 60  GDQH-SLQDVKALGIAGQMHGATLLD-AQQRVLRPAILWNDGRCAQECALLEARVPQS-- 115

Query: 278 DYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVT 337
              + I G  + P F+A KL W+ ++   + R I  ++ L      +L   +TG     +
Sbjct: 116 ---RVITGNLMMPGFTAPKLLWVQRHEPEIFRQI--DKVLLPK--DYLRLRMTGE--FAS 166

Query: 338 DVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTVAYQF 397
           D+++A+ TM +++    W  ++ +   +    +P +   SEI G       L+  VA  +
Sbjct: 167 DMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGA------LLPEVAKAW 220

Query: 398 GPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLY 457
           G    P+ A  G  A AGA        + ++D  +   SL      T  VYF  + G L 
Sbjct: 221 GMATVPVVAGGGDNA-AGAV------GVGMVDANQAMLSLG-----TSGVYFAVSEGFLS 268

Query: 458 AP 459
            P
Sbjct: 269 KP 270

Length = 484

>gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 62.1 bits (152), Expect = 3e-10
 Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 21/145 (14%)

Query: 247 GEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 306
           GE L N   + D R D ++++V  + P   K+ L    G+   P+ +  +L  L      
Sbjct: 87  GELLGNPYHYRDPRTDGVMEEVFERIP---KEELYERTGIQFMPFNTLYQLYALK----- 138

Query: 307 VRRAIKENRCLFGTVDTWL------VWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLC 360
                KE   L    D  L       + LTG    V + TNAS T L++  +  WD  L 
Sbjct: 139 -----KEGPELLEKADKLLMIPDLLNYLLTGVK--VNEYTNASTTQLLDPRTRDWDTELL 191

Query: 361 KYFAVPPTILPEIRSSSEIYGKVHS 385
           +   +P  + P +     + G +  
Sbjct: 192 EKLGIPEELFPPLVEPGTVLGPLKP 216

This subfamily is predominantly composed of bacterial L-rhamnulose kinases (RhuK, also known as rhamnulokinase; EC 2.7.1.5), which are encoded by the rhaB gene and catalyze the ATP-dependent phosphorylation of L-rhamnulose to produce L-rhamnulose-1-phosphate and ADP. Some uncharacterized homologous sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli RhuK, which exists as a monomer composed of two large domains. The ATP binding site is located in the cleft between the two domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of divalent Mg2+ or Mn2+ is required for catalysis. Although an intramolecular disulfide bridge is present in Rhuk, disulfide formation is not important to the regulation of RhuK enzymatic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 440

>gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 57/180 (31%), Positives = 78/180 (43%), Gaps = 18/180 (10%)

Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217
           ID GT +VR  +    T   + S +    T  P+ GWAEQ+P +  +A+   +  A   L
Sbjct: 6   IDGGTESVRAGLF-DTTGRPLGSAAAPYGTTHPRPGWAEQNPEDWWEALGAAVREA---L 61

Query: 218 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDK 277
           +  G++  D+  L       T V  D   G PL  AI+W D RA     +VLA   D  +
Sbjct: 62  AEAGIAAPDVAALCCDTTCCTVVALDAA-GTPLRPAILWMDVRAAEEAARVLATGDDALR 120

Query: 278 DYLKPICGLPVSPYFSALKLSWLIQNVSSV-RRA--IKENRCLFGTVDTWLVWNLTGRTC 334
                  G  VS  +   K  WL +N   V  RA  I E        D +L + LTGR C
Sbjct: 121 -LNGS--GGGVSAEWMVPKAMWLKKNEPDVYARAATICE------AQD-YLNFRLTGRWC 170

This subgroup is composed of uncharacterized proteins with similarity to carbohydrate kinases. Some members are carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 6/98 (6%)

Query: 29  IDEGTRTVRFAIISALTQEEVVSHSMDISTI-SPQEGWAEQDPMEILQAVQTTMDRAIEK 87
           ID GT++VR A++       V    + I    SP+ GWAEQDP    QA+        E+
Sbjct: 5   IDCGTQSVR-ALLFDRQGNLVAKGQVPIEPYYSPKPGWAEQDPDYYWQALCEACRELWEQ 63

Query: 88  LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
                +    I  + +T QRET V+ D + G+PL  AI
Sbjct: 64  ---IPVDPGRIAGVALTTQRETFVLLDKD-GKPLRPAI 97

This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 488

>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score = 57.9 bits (141), Expect = 6e-09
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVV-SHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 83
            +G ID GT  V+  ++      EVV S S +     P+ GW+EQDP +  +A +  +  
Sbjct: 2   YLG-IDLGTSGVKALLVDE--DGEVVASASAEYPLSQPKPGWSEQDPEDWWEATKAAIRE 58

Query: 84  AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
            + K    G++  ++  +G++ Q    V+ D   G+ L  AI
Sbjct: 59  LLAK---SGIAGGEVRGIGLSGQMHGLVLLD-KDGKVLRPAI 96

This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 29  IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 88
           ID GT  V+  ++     E + S S   + ISP  GW+EQDP +   A     + AI++L
Sbjct: 3   IDLGTSGVKALLVDE-QGEVIASGSAPHTVISPHPGWSEQDPEDWWDAT----EEAIKEL 57

Query: 89  SA-HGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
                    DI  +GI+ Q    V+ D N GE L  AI
Sbjct: 58  LEQASEMGQDIKGIGISGQMHGLVLLDAN-GEVLRPAI 94

This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481

>gnl|CDD|198376 cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup 2; members of the FGGY family of carbohydrate kinases

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 12/106 (11%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHS-----MDISTISPQEGWAEQDPMEILQAVQT 79
            +G  D G+ +++ A++ A T + + S S     M+I  +SPQ GWAEQDP         
Sbjct: 2   FLG-YDIGSSSIKAALVDAETGKSLASVSYPEQEMEI--LSPQPGWAEQDPEIWWDYTCA 58

Query: 80  TMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
              + I +         +I  +GI+ Q    V+ D   G  L  AI
Sbjct: 59  ATKQLINQGKEDL---SNIQAIGISYQMHGLVLVDKQ-GNVLRPAI 100

This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17). They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 490

>gnl|CDD|212666 cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 54.1 bits (131), Expect = 7e-08
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
           L+G ID GT TV  A++  L   E+   S    T++PQ G+ EQD  E+ +AV   +   
Sbjct: 2   LLG-IDAGT-TVTKAVLFDLDGREIAVASRRNPTLTPQPGYVEQDMDELWEAVAAVIREL 59

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
           +EK    G+  +DI  +G+T Q +   + D   G+P+   I
Sbjct: 60  LEKA---GVDAEDIAGIGVTGQGDGLWLVD-KEGKPVGPGI 96

This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 447

>gnl|CDD|198369 cd07798, FGGY_AI-2K_like, Autoinducer-2 kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 54.2 bits (130), Expect = 8e-08
 Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 38/237 (16%)

Query: 157 VIDEGTRTVRFAIISA------LTQEEVVSHS----MDISTISPQEGWAEQDPMEILQAV 206
           V D GT   R A++SA      + +E++  ++     D    SP+E W +         +
Sbjct: 4   VFDIGTGNARVAVVSADGTVWGIEREDIEYYTDKLYPDARYFSPEELWKQ---------L 54

Query: 207 QTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVD 266
                  +++          ++ +  T+QR+  V+ +   G+             DN   
Sbjct: 55  LGGAKELLKESPEI-----PVIGITSTSQRQGIVLINKV-GKAFLGL-----PNIDNRGR 103

Query: 267 QVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLV 326
           +  A   D+++ Y K   G   +  FSA KL  L +   S+   I +      ++  W+ 
Sbjct: 104 EWEAGIEDREEIYEK--TGRLPTALFSAAKLMGLKKRQPSLWAGIAK----ITSISDWVT 157

Query: 327 WNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV 383
             L+G    V + + A  T+L +++S +W   LC  F +   ILPE+  +    GK+
Sbjct: 158 EMLSGIL--VYEPSQACETLLFDVESKEWSERLCGIFGISMDILPELVRAGTSLGKI 212

This subgroup consists of uncharacterized hypothetical bacterial proteins with similarity to bacterial autoinducer-2 (AI-2) kinases, which catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, leading to the inactivation of lsrR, the repressor of the lsr operon. Members of this subgroup belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 437

>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
            IG ID GT +V+ ++++ L  E V   S + +T SP  GW+EQDP +   AVQ  ++  
Sbjct: 2   YIG-IDIGTSSVKASLVN-LDGELVAFASREYTTSSPHPGWSEQDPADWWDAVQRALEAL 59

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
              L   G S +DI  +G+T Q    V+ D   G  L  AI
Sbjct: 60  ---LDQAGDSAEDIAAIGVTGQMHGAVLLD-QQGRVLRPAI 96

This subfamily is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. XKs do not have any known allosteric regulators, and they may have weak but significant activity in the absence of substrate. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases

 Score = 51.4 bits (124), Expect = 6e-07
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVV-SHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 83
           L+G ID GT + +  +       EV+   S +    +PQ GWAEQDP     AV   +  
Sbjct: 2   LLG-IDIGTSSTKAVLFD--LDGEVLAQASREYELSTPQPGWAEQDPEVWWDAVCEIIRE 58

Query: 84  AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
            + K         +I  +G++ Q  T V  D + G PL  AI
Sbjct: 59  LVAKAGVDP---SEIKAIGVSGQGPTVVPVDKD-GRPLRPAI 96

This subgroup is composed of uncharacterized bacterial and archaeal xylulose kinases-like proteins with similarity to bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 492

>gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases

 Score = 51.2 bits (123), Expect = 8e-07
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 19/105 (18%)

Query: 405 YALEGSIAVAGAAVKWLRDNLNLMDNV--RETESLAEKVMTTGDVYFVPAFGGLYA---- 458
           + +EG     G+ +KW +D +   D+    E    A  V         P   GL      
Sbjct: 294 WLVEGGQTSTGSVLKWFKDLIGGGDDNGYDELNEEAAAV--------PPGSEGLVVLDYF 345

Query: 459 -----PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
                PY    ARG I G+T   T+ H+ RA LE + + TR I +
Sbjct: 346 QGNRTPYTDPLARGAIWGLTLGHTRAHVYRAILEGVAYGTRHIFD 390

This subgroup is composed of uncharacterized proteins with similarity to carbohydrate kinases. Some members are carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 29  IDEGTRTVRFAIISA---LTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
           ID GT  V+ A++S    L      ++           G AEQDP +   AV     R +
Sbjct: 5   IDLGTSGVKAALVSPDGRLVASATEAYETHY----LPGGGAEQDPEDWWDAVVRATRRLL 60

Query: 86  EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
           E     G++   +  +  + Q +  V  D   G PL  AI
Sbjct: 61  ED---SGVNPRRVAGISFSGQMQGVVPVD-EDGRPLRPAI 96

This subgroup is composed of uncharacterized proteins with similarity to bacterial D-Xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 514

>gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases

 Score = 48.3 bits (116), Expect = 6e-06
 Identities = 51/200 (25%), Positives = 77/200 (38%), Gaps = 37/200 (18%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSH-SMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           IGV D GT + R  +  A  +  +++     I    PQ  + EQ   +I QAV   +  A
Sbjct: 4   IGV-DVGTGSARAGLFDA--KGRLLARAVRPIQIWHPQPDFVEQSSDDIWQAVCQAVKAA 60

Query: 214 IEKLSAHGLSRDDI-----------VTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRAD 262
           I   +  G+  + +           V L    Q   +V      G+   N IVW D RA 
Sbjct: 61  I---AGAGVDPEQVKGIGFDATCSLVVLDKEGQ-PLSVSPS---GDNEQNIIVWMDHRA- 112

Query: 263 NIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV-SSVRRAIKENRCLFGTV 321
             + +  A+  +     +    G  +SP     KL WL +N+  +  RA K     F   
Sbjct: 113 --ISE--AERINATGHPVLKYVGGVISPEMETPKLLWLKENLPETWSRAGK----FFDLP 164

Query: 322 DTWLVWNLTGR----TCHVT 337
           D +L W  TG      C + 
Sbjct: 165 D-FLTWRATGSETRSLCTLV 183

This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 536

>gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQE-GWAEQDPMEILQAVQTTMDRA 84
           IGV D GT +VR A +  L   E+ S S       P   GWAEQDP +   AV+T +  A
Sbjct: 4   IGV-DVGTESVR-AGVFDLNGRELASASRPYPVPVPYGAGWAEQDPEDWWPAVRTAVRAA 61

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
           +   +A G+  D +  LG+     T V  D   G+PL  A+
Sbjct: 62  V---AAAGVDPDQVAALGVDATSCTVVPLDAE-GQPLTPAL 98

This subfamily is composed of ribulokinases (RBKs) and similar proteins from bacteria and eukaryota. RBKs catalyze the MgATP-dependent phosphorylation of a variety of sugar substrates including L- and/or D-ribulose. Members of this subfamily contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 465

>gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499
           P+W  +ARG I G     T+ H+ RA +E I +  R+ LE 
Sbjct: 357 PHWDPEARGAIIGFGDVHTRAHLYRAIIEGIAYALREGLER 397

This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 488

>gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
           ++GV D GT + + A++       V   S      +P +G AEQDP EI  AV   +D  
Sbjct: 2   ILGV-DIGTTSTK-AVLFDEDGRIVAGVSKRYPLETPPDGAAEQDPDEIFDAVLEILDEV 59

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
           + K          I  +  ++   + +  D + GEPL   I
Sbjct: 60  VAKALG-----GRIAAVSFSSAMHSLIALDED-GEPLTPVI 94

This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain. Length = 440

>gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion]

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 24/187 (12%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           +IGV D GT + R  +    T   +           P    AEQ   +  +AV   +   
Sbjct: 5   VIGV-DVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDV 63

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLY---------NAIVWSDTRADNI 264
           + K    G+   D+V +G+ +   + VV D   G PL          N I+W D RA   
Sbjct: 64  VAKA---GVDPADVVGIGV-DATCSLVVID-RDGNPLAVLPEFPNNPNVILWMDHRA--- 115

Query: 265 VDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTW 324
           V++  A+  +     +    G  +SP     KL WL +   +V     E       +  W
Sbjct: 116 VEE--AEEINATCHPVLDYYGGKISPEMMIPKLMWLKREAPAVW----ERAAHIFDLADW 169

Query: 325 LVWNLTG 331
           L W LTG
Sbjct: 170 LTWKLTG 176

Length = 544

>gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 29  IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 88
           ID GT +VR  +    T   + S +    T  P+ GWAEQ+P +  +A+   +  A   L
Sbjct: 6   IDGGTESVRAGLF-DTTGRPLGSAAAPYGTTHPRPGWAEQNPEDWWEALGAAVREA---L 61

Query: 89  SAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
           +  G++  D+  L       T V  D   G PL  AI
Sbjct: 62  AEAGIAAPDVAALCCDTTCCTVVALDAA-GTPLRPAI 97

This subgroup is composed of uncharacterized proteins with similarity to carbohydrate kinases. Some members are carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of carbohydrate kinases

 Score = 44.5 bits (106), Expect = 9e-05
 Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 40/204 (19%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSH-------SMDISTISPQEGWAEQDPMEILQAVQ 207
           IG +D GT +VR  ++   T  E+ S         M           A Q P + ++ ++
Sbjct: 4   IG-LDFGTLSVRALLVDTETGAELASAVVEYPHGVMGEYLPDLPPNQALQHPADYIEGLE 62

Query: 208 TTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLY---------NAIV--W 256
           T +   +++    G+  DD+V +G+     T +  D + G PL          +A V  W
Sbjct: 63  TAIPEVLKEA---GVDPDDVVGIGVDTTGSTPIPVDED-GTPLCLLPEFKNNPHAYVKLW 118

Query: 257 SDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRC 316
            D  A    D++ A   ++ +DYL+   G   S         W    +  V R   E   
Sbjct: 119 KDHTAQKEADRITALAHERGEDYLR-YYGGVYS-------SEWFWPKILHVLR---EAPE 167

Query: 317 LFGTVDT------WLVWNLTGRTC 334
           ++   D+      W+   LTG T 
Sbjct: 168 VYEAADSWVEACDWIPAQLTGTTD 191

This subgroup is predominantly composed of bacterial ribulokinases (RBK) which catalyze the MgATP-dependent phosphorylation of L(or D)-ribulose to produce L(or D)-ribulose 5-phosphate and ADP. RBK also phosphorylates a variety of other sugar substrates including ribitol and arabitol. The reason why L-RBK can phosphorylate so many different substrates is not yet clear. The presence of Mg2+ is required for catalytic activity. This group belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 498

>gnl|CDD|131676 TIGR02628, fuculo_kin_coli, L-fuculokinase

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 10/165 (6%)

Query: 221 GLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYL 280
            L+   I  + +T        +D   G  LY  I W   R   ++D +       D   L
Sbjct: 65  ELTEKHIRGIAVTTFGVDGAPFD-KQGNQLYPIISWKCPRTAPVMDNIERLL---DAQRL 120

Query: 281 KPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVT 340
             I G+    + +  KL WL ++   +    + ++ +F  + + +   LTG     TD+T
Sbjct: 121 YAINGIGAYSFNTLYKLVWLKEHHPQLFE--RMHKFVF--ISSMITHRLTGE--FTTDIT 174

Query: 341 NASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS 385
            A  +M+ ++    W P + +   +   + P +  + E  G + +
Sbjct: 175 MAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQN 219

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon [Energy metabolism, Sugars]. Length = 465

>gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 53/241 (21%), Positives = 98/241 (40%), Gaps = 40/241 (16%)

Query: 157 VIDEGTRTVRFAI-------ISALTQE------EVVSHSMDISTISPQEGWAEQDPMEIL 203
            +D GT ++R  I       I+    E        V  SM+      ++ W         
Sbjct: 7   ALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDL---EKNW--------- 54

Query: 204 QAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADN 263
           Q     + +A++K    G+   DI  +  T+ RE  V++D N G  ++ A    D RA  
Sbjct: 55  QLACQCIRQALQK---AGIPASDIAAVSATSMREGIVLYDRN-GTEIW-ACANVDARASR 109

Query: 264 IVDQVLAKFPDQDKDYLKPICGLPVSPYFSAL-KLSWLIQNVSSVRRAIKENRCLFGTVD 322
            V ++     + +++  +   G  ++    AL +L WL  +   + R           + 
Sbjct: 110 EVSELKELHNNFEEEVYR-CSGQTLA--LGALPRLLWLAHHRPDIYRQAHT----ITMIS 162

Query: 323 TWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK 382
            W+ + L+G      D +NA  T L+++ +  WDP L +   +   ILP ++ +  + G 
Sbjct: 163 DWIAYMLSGEL--AVDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVKETGTVLGH 220

Query: 383 V 383
           V
Sbjct: 221 V 221

Length = 520

>gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of carbohydrate kinases

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSH-------SMDISTISPQEGWAEQDPMEILQAVQ 78
           IG +D GT +VR  ++   T  E+ S         M           A Q P + ++ ++
Sbjct: 4   IG-LDFGTLSVRALLVDTETGAELASAVVEYPHGVMGEYLPDLPPNQALQHPADYIEGLE 62

Query: 79  TTMDRAIEKLSAHGLSRDDIVTLGI 103
           T +   +++    G+  DD+V +G+
Sbjct: 63  TAIPEVLKEA---GVDPDDVVGIGV 84

This subgroup is predominantly composed of bacterial ribulokinases (RBK) which catalyze the MgATP-dependent phosphorylation of L(or D)-ribulose to produce L(or D)-ribulose 5-phosphate and ADP. RBK also phosphorylates a variety of other sugar substrates including ribitol and arabitol. The reason why L-RBK can phosphorylate so many different substrates is not yet clear. The presence of Mg2+ is required for catalytic activity. This group belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 498

>gnl|CDD|233356 TIGR01315, 5C_CHO_kinase, FGGY-family pentulose kinase

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 406 ALEGSIAVAGAAVKWLRDNLN-LMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKD 464
           A + ++  A AA K + D LN  +  +    +           +  P   G  +P    +
Sbjct: 339 AYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPDLWGNRSPIADPN 398

Query: 465 ARGVICGMTQFTTKGHIIR---AALEAICFQTRDILE 498
            RGVI G++   +K  +     A +E I + TR I+E
Sbjct: 399 MRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVE 435

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PMID:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. Length = 541

>gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 8/100 (8%)

Query: 407 LEGSIAVAGAAVKWLRDNLNLMDNVRET--------ESLAEKVMTTGDVYFVPAFGGLYA 458
           LEG  +  G    W  D   L     E          + AE+      +  +  F G  +
Sbjct: 295 LEGGQSATGGIFLWFVDVGRLAATFDEAQEKGVALDAAAAERGPQLRGLLALDRFNGNRS 354

Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           P+   + RG + G+T  T +  I RA LEA+ F TR I+E
Sbjct: 355 PFVDPELRGFLLGLTLPTDRADIYRALLEAVAFGTRLIVE 394

This subfamily is composed of ribulokinases (RBKs) and similar proteins from bacteria and eukaryota. RBKs catalyze the MgATP-dependent phosphorylation of a variety of sugar substrates including L- and/or D-ribulose. Members of this subfamily contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 465

>gnl|CDD|233356 TIGR01315, 5C_CHO_kinase, FGGY-family pentulose kinase

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 37/192 (19%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMD-ISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           IGV D GT + R  II   +  ++++ +   I T +P  G   Q  + I QA+   + + 
Sbjct: 3   IGV-DVGTGSARACIID--STGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQV 59

Query: 214 I-----EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL---------YNAIVWSDT 259
           +     +  S  G+  D   +L         VV   + GEPL          N I+W D 
Sbjct: 60  LAESKVDPNSVKGIGFDATCSL---------VVLTHD-GEPLPVSKNGGADQNIILWMDH 109

Query: 260 RADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFG 319
           RA    +++ A         L    G  +S      K+ WL  N+          RC F 
Sbjct: 110 RALAEAEKINAT-----NHNLLRYVGGKMSVEMEIPKVLWLKNNMPP----ELFARCKFF 160

Query: 320 TVDTWLVWNLTG 331
            +  +L W  TG
Sbjct: 161 DLTDFLTWRATG 172

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PMID:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. Length = 541

>gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 444 TGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIR---AALEAICFQTRDILE 498
           T D++ +P F G  +P    + RGVI G+T  T+   + R   A L+AI + TR I+E
Sbjct: 374 TRDLHVLPDFHGNRSPLADPNLRGVISGLTLDTSLDDLARLYLATLQAIAYGTRHIIE 431

This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 536

>gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion]

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 427 LMDNVRETESLAEKVMT-TGDVYFVPAFGGLYAPYWRKDARGVICGM---TQFTTKGHII 482
           L   +      A  +      ++ +  F G  +P      +GVI G+   T   +   + 
Sbjct: 348 LAQRLELLTEAAAAIPPLASGLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLY 407

Query: 483 RAALEAICFQTRDILE 498
           RA LEA  F TR I+E
Sbjct: 408 RALLEATAFGTRAIIE 423

Length = 544

>gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of carbohydrate kinases

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 466 RGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
            G+I G+T  T    I RA +EA  F  R I+E +
Sbjct: 395 TGLILGLTLQTKAEEIYRALIEATAFGARAIIERF 429

This subgroup is predominantly composed of bacterial ribulokinases (RBK) which catalyze the MgATP-dependent phosphorylation of L(or D)-ribulose to produce L(or D)-ribulose 5-phosphate and ADP. RBK also phosphorylates a variety of other sugar substrates including ribitol and arabitol. The reason why L-RBK can phosphorylate so many different substrates is not yet clear. The presence of Mg2+ is required for catalytic activity. This group belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 498

>gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a subfamily of the FGGY family of carbohydrate kinases

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 29  IDEGTRTVRFAIISALTQEEV----VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
           ID GT +V+  ++ + T+E +       S ++ +  P     EQD  +IL     T+D  
Sbjct: 6   IDIGTTSVKACLLDSETKEVLASQSKPTSANVPSDGPLGS--EQDVDKILS----TLDSC 59

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIDKMPSLVYN 134
           +++L    L    +  +G+T Q    V+W  +      + I    + V N
Sbjct: 60  LKRLPKELLK--KVKAIGVTGQMHGIVLWKQDQSCEDGDLISITNTPVSN 107

This subfamily is predominantly composed of uncharacterized bacterial and eukaryotic proteins with similarity to human sedoheptulokinase (SHK, also known as D-altro-heptulose or heptulokinase, EC 2.7.1.14) encoded by the carbohydrate kinase-like (CARKL/SHPK) gene. SHK catalyzes the ATP-dependent phosphorylation of sedoheptulose to produce sedoheptulose 7-phosphate and ADP. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448

>gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 29  IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 88
           ID GT  V+  I+     E V S +  ++   P   W+EQDP +  QA     DRA++ L
Sbjct: 5   IDLGTSGVK-VILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQAT----DRAMKAL 59

Query: 89  SAHGLSRDDIVTLGITNQRETTVVWD 114
                S  D+  LGI  Q     + D
Sbjct: 60  GDQH-SLQDVKALGIAGQMHGATLLD 84

Length = 484

>gnl|CDD|198351 cd07773, FGGY_FK, L-fuculose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 22/233 (9%)

Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSM----DISTISPQEGWAEQDPMEILQAVQTTMDR 212
           V+D G   VR   ++   Q  V S S+         +    +   D  EI Q +     +
Sbjct: 4   VLDCGATNVRAIAVNEQGQI-VASASLPNATKQGIENND--YHIWDFDEIWQKLVECATQ 60

Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
            + +L+A       IV + +T         D   G  LY  I W   R   ++  +  + 
Sbjct: 61  VLSQLNA-----KQIVAITVTTFGVDGAPVD-KQGNQLYPIISWKCPRTAPVMKNIENEI 114

Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
              D+  L  I G+    + +  KL WL +N   +    K ++ +F  + + L   LTG 
Sbjct: 115 ---DRLSLYQINGVGAYSFNTLYKLVWLKENHPQLLE--KMHKFVF--ISSMLTHRLTGE 167

Query: 333 TCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS 385
               TD T A  +M+ ++ S  W P +  Y  +   + P +  + E  G + +
Sbjct: 168 F--TTDRTMAGTSMMTDLTSGNWSPSILAYLGLSRELFPPLVDAGEKIGLLTT 218

This subfamily is composed of bacterial L-fuculose kinases (FK, also known as fuculokinase, EC 2.7.1.51), which catalyze the ATP-dependent phosphorylation of L-fuculose to produce L-fuculose-1-phosphate and ADP. The presence of Mg2+ or Mn2+ is required for enzymatic activity. FKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	500
COG0554	499	GlpK Glycerol kinase [Energy production and conver	100.0
PLN02295	512	glycerol kinase	100.0
PTZ00294	504	glycerol kinase-like protein; Provisional	100.0
PRK00047	498	glpK glycerol kinase; Provisional	100.0
PRK15027	484	xylulokinase; Provisional	100.0
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	100.0
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	100.0
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	100.0
PRK04123	548	ribulokinase; Provisional	100.0
PRK10331	470	L-fuculokinase; Provisional	100.0
TIGR01234	536	L-ribulokinase L-ribulokinase. This enzyme catalyz	100.0
TIGR01315	541	5C_CHO_kinase FGGY-family pentulose kinase. This m	100.0
PRK10939	520	autoinducer-2 (AI-2) kinase; Provisional	100.0
TIGR01312	481	XylB D-xylulose kinase. D-xylulose kinase (XylB) g	100.0
TIGR02628	465	fuculo_kin_coli L-fuculokinase. Members of this fa	100.0
PLN02669	556	xylulokinase	100.0
KOG2517|consensus	516		100.0
COG1069	544	AraB Ribulose kinase [Energy production and conver	100.0
TIGR02627	454	rhamnulo_kin rhamnulokinase. This model describes	100.0
PRK10640	471	rhaB rhamnulokinase; Provisional	100.0
PF00370	245	FGGY_N: FGGY family of carbohydrate kinases, N-ter	100.0
COG0554	499	GlpK Glycerol kinase [Energy production and conver	99.94
KOG2531|consensus	545		99.9
PF00370	245	FGGY_N: FGGY family of carbohydrate kinases, N-ter	99.84
PRK00047	498	glpK glycerol kinase; Provisional	99.83
PLN02295	512	glycerol kinase	99.83
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	99.82
PTZ00294	504	glycerol kinase-like protein; Provisional	99.81
PRK10331	470	L-fuculokinase; Provisional	99.8
TIGR01234	536	L-ribulokinase L-ribulokinase. This enzyme catalyz	99.79
PRK15027	484	xylulokinase; Provisional	99.79
TIGR02628	465	fuculo_kin_coli L-fuculokinase. Members of this fa	99.79
PRK04123	548	ribulokinase; Provisional	99.79
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	99.78
TIGR01315	541	5C_CHO_kinase FGGY-family pentulose kinase. This m	99.77
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	99.77
PRK10939	520	autoinducer-2 (AI-2) kinase; Provisional	99.75
KOG2517|consensus	516		99.72
PLN02669	556	xylulokinase	99.69
TIGR02627	454	rhamnulo_kin rhamnulokinase. This model describes	99.64
COG1069	544	AraB Ribulose kinase [Energy production and conver	99.63
TIGR01312	481	XylB D-xylulose kinase. D-xylulose kinase (XylB) g	99.63
PF02782	198	FGGY_C: FGGY family of carbohydrate kinases, C-ter	99.56
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	98.97
PRK10640	471	rhaB rhamnulokinase; Provisional	98.91
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	98.41
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	97.88
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	97.88
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	97.62
PRK13311	256	N-acetyl-D-glucosamine kinase; Provisional	97.59
KOG2531|consensus	545		97.58
PRK09698	302	D-allose kinase; Provisional	97.57
COG1940	314	NagC Transcriptional regulator/sugar kinase [Trans	97.51
PRK09698	302	D-allose kinase; Provisional	97.51
PRK13311	256	N-acetyl-D-glucosamine kinase; Provisional	97.43
PRK09557	301	fructokinase; Reviewed	97.42
TIGR00744	318	ROK_glcA_fam ROK family protein (putative glucokin	97.41
PRK13310	303	N-acetyl-D-glucosamine kinase; Provisional	97.41
PRK09557	301	fructokinase; Reviewed	97.4
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	97.37
TIGR00744	318	ROK_glcA_fam ROK family protein (putative glucokin	97.37
PF00480	179	ROK: ROK family; InterPro: IPR000600 A family of b	97.36
COG1940	314	NagC Transcriptional regulator/sugar kinase [Trans	97.36
PRK13310	303	N-acetyl-D-glucosamine kinase; Provisional	97.29
COG2971	301	Predicted N-acetylglucosamine kinase [Carbohydrate	97.25
PRK12408	336	glucokinase; Provisional	97.09
smart00732	99	YqgFc Likely ribonuclease with RNase H fold. YqgF	97.06
PF00480	179	ROK: ROK family; InterPro: IPR000600 A family of b	97.04
PF05378	176	Hydant_A_N: Hydantoinase/oxoprolinase N-terminal r	97.01
PF01869	271	BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In	97.0
PRK13321	256	pantothenate kinase; Reviewed	96.73
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	96.71
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	96.62
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	96.62
PRK13318	258	pantothenate kinase; Reviewed	96.61
PF14574	412	DUF4445: Domain of unknown function (DUF4445); PDB	96.55
PRK05082	291	N-acetylmannosamine kinase; Provisional	96.54
smart00732	99	YqgFc Likely ribonuclease with RNase H fold. YqgF	96.53
PRK11031	496	guanosine pentaphosphate phosphohydrolase; Provisi	96.49
PF14574	412	DUF4445: Domain of unknown function (DUF4445); PDB	96.48
PRK10854	513	exopolyphosphatase; Provisional	96.44
COG2971	301	Predicted N-acetylglucosamine kinase [Carbohydrate	96.28
PRK00292	316	glk glucokinase; Provisional	96.25
PRK12408	336	glucokinase; Provisional	96.15
TIGR03123	318	one_C_unchar_1 probable H4MPT-linked C1 transfer p	96.12
PRK05082	291	N-acetylmannosamine kinase; Provisional	96.11
PRK14101	638	bifunctional glucokinase/RpiR family transcription	96.05
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	96.01
PF00349	206	Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexo	95.99
PRK00292	316	glk glucokinase; Provisional	95.95
TIGR03706	300	exo_poly_only exopolyphosphatase. It appears that	95.76
PRK13321	256	pantothenate kinase; Reviewed	95.72
PF01869	271	BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In	95.68
PRK09472	420	ftsA cell division protein FtsA; Reviewed	95.61
PRK13318	258	pantothenate kinase; Reviewed	95.55
TIGR02707	351	butyr_kinase butyrate kinase. This model represent	95.35
PF05378	176	Hydant_A_N: Hydantoinase/oxoprolinase N-terminal r	95.2
COG0248	492	GppA Exopolyphosphatase [Nucleotide transport and	95.06
PRK14101	638	bifunctional glucokinase/RpiR family transcription	95.02
smart00842	187	FtsA Cell division protein FtsA. FtsA is essential	94.89
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	94.82
smart00842	187	FtsA Cell division protein FtsA. FtsA is essential	94.27
TIGR00749	316	glk glucokinase, proteobacterial type. This model	94.14
KOG1794|consensus	336		93.91
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	93.86
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	93.46
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	93.38
PLN02914	490	hexokinase	93.27
PRK09472	420	ftsA cell division protein FtsA; Reviewed	93.27
PF13941	457	MutL: MutL protein	93.19
PF00349	206	Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexo	93.1
PTZ00288	405	glucokinase 1; Provisional	92.98
COG4820	277	EutJ Ethanolamine utilization protein, possible ch	92.72
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	92.3
PLN02596	490	hexokinase-like	92.27
PLN02362	509	hexokinase	91.86
PF13941	457	MutL: MutL protein	91.69
PLN02405	497	hexokinase	91.52
TIGR02707	351	butyr_kinase butyrate kinase. This model represent	91.44
PRK03011	358	butyrate kinase; Provisional	91.17
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	91.04
PTZ00107	464	hexokinase; Provisional	90.84
PRK13331	251	pantothenate kinase; Reviewed	90.68
PRK13317	277	pantothenate kinase; Provisional	90.6
PRK13324	258	pantothenate kinase; Reviewed	90.49
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	90.13
KOG1794|consensus	336		89.63
PTZ00288	405	glucokinase 1; Provisional	89.17
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	89.0
TIGR00749	316	glk glucokinase, proteobacterial type. This model	87.88
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	87.86
PRK12440	397	acetate kinase; Reviewed	87.81
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	87.37
PTZ00340	345	O-sialoglycoprotein endopeptidase-like protein; Pr	87.36
PRK10719	475	eutA reactivating factor for ethanolamine ammonia	87.12
PRK13320	244	pantothenate kinase; Reviewed	86.45
COG5026	466	Hexokinase [Carbohydrate transport and metabolism]	86.25
PRK07058	396	acetate kinase; Provisional	86.11
TIGR00555	279	panK_eukar pantothenate kinase, eukaryotic/staphyl	85.75
PRK09604	332	UGMP family protein; Validated	85.0
PRK07157	400	acetate kinase; Provisional	84.92
PRK13326	262	pantothenate kinase; Reviewed	84.23
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	84.04
PRK13324	258	pantothenate kinase; Reviewed	83.75
PLN02914	490	hexokinase	83.62
PRK11031	496	guanosine pentaphosphate phosphohydrolase; Provisi	83.32
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	83.28
PRK10854	513	exopolyphosphatase; Provisional	83.22
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	83.11
COG3734	306	DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate	83.03
PF06277	473	EutA: Ethanolamine utilisation protein EutA; Inter	82.84
PF00871	388	Acetate_kinase: Acetokinase family; InterPro: IPR0	82.74
PLN02362	509	hexokinase	82.52
PLN02666	1275	5-oxoprolinase	82.44
TIGR00016	404	ackA acetate kinase. Acetate kinase is involved in	81.94
PLN02405	497	hexokinase	81.83
PLN02596	490	hexokinase-like	81.8
TIGR03706	300	exo_poly_only exopolyphosphatase. It appears that	81.77
COG4020	332	Uncharacterized protein conserved in archaea [Func	81.63
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	81.26
COG3894	614	Uncharacterized metal-binding protein [General fun	80.83

>COG0554 GlpK Glycerol kinase [Energy production and conversion]

Probab=100.00  E-value=1.2e-65  Score=507.88  Aligned_cols=340  Identities=50%  Similarity=0.853  Sum_probs=311.7

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      ++|+++||.||||+|+++||.+ |++++..+.+++.++|++||+||||.+||.++..+++.++.+   .++++.+|.+||
T Consensus         4 ~~yIlAiDqGTTssRaivfd~~-g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~---~~i~~~~iaaIG   79 (499)
T COG0554           4 DKYILAIDQGTTSSRAIVFDED-GNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAK---AGIKPGEIAAIG   79 (499)
T ss_pred             ccEEEEEecCCcceeEEEECCC-CCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHH---cCCCccceEEEE
Confidence            5799999999999999999985 999999999999999999999999999999999999999876   588999999999


Q ss_pred             EcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHh
Q psy9709         232 ITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAI  311 (500)
Q Consensus       232 vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~  311 (500)
                      |++|.+|+++||+++|+|++|+|.|+|.|..+.++++.+...   .+.+.+.||..+.|+|+..|+.|+.+|.|...+++
T Consensus        80 ITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~g~---~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~~a  156 (499)
T COG0554          80 ITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKADGY---EERIREKTGLVLDPYFSATKIKWILDNVPGARERA  156 (499)
T ss_pred             eeccceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhcch---hhhhhhhcCCccCCCccchhhhHHHhhChhhhhHh
Confidence            999999999999999999999999999999999999998722   36788899999999999999999999999999999


Q ss_pred             hcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec------
Q psy9709         312 KENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS------  385 (500)
Q Consensus       312 ~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~------  385 (500)
                      .++...|.++..||.|+|||....+||+||||+|+|||+++.+||+++|+.||||.++||+|+++.++.|.+..      
T Consensus       157 e~Gel~fGTiDtWLiw~LTgg~~h~TD~sNASRT~L~ni~~l~WD~elL~il~Ip~~~LPev~~ss~~~G~t~~~~~g~~  236 (499)
T COG0554         157 EKGELLFGTIDTWLIWKLTGGKVHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEVRPSSEIYGVTGIGFLGAE  236 (499)
T ss_pred             hcCCeEEecchhhheeeccCCceeccccchhHHHhcccccccCCCHHHHHHhCCChHhCccccccccccccccccccCCc
Confidence            88889999999999999996336899999999999999999999999999999999999999999988887211      


Q ss_pred             ----------------------------------------------CCcceEEEEEeecCCCCceeeechhhhchhHHHH
Q psy9709         386 ----------------------------------------------NNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVK  419 (500)
Q Consensus       386 ----------------------------------------------~~G~~~~~~~~~~~~~p~~~~~~g~~~~~G~~~~  419 (500)
                                                                    ..||++|+++.++.  .-.|.+||++..+|.+++
T Consensus       237 vPI~g~~GDQQAALfGq~c~~pG~~K~TYGTG~F~l~ntG~~~~~S~~~LLtTIa~~l~g--k~~YALEGsif~aGaavq  314 (499)
T COG0554         237 VPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWGLDG--KVTYALEGSIFVAGAAVQ  314 (499)
T ss_pred             eeeccccchhHHHHhhcccCCcCccccccccceeeeeccCCccccCCCCceeEEEeccCC--eEEEEEecceeehhhHHH
Confidence                                                          12344555555443  247999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy9709         420 WLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL  499 (500)
Q Consensus       420 w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~  499 (500)
                      |+++.++...+..+.+.+|.+++.++|++|.|.|.|.++||||+++||.|+||+..++++|++||++|+|||+.+.+++.
T Consensus       315 WLrd~L~~i~~a~~~e~~A~~~~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~RA~LEsiayQ~~dv~~a  394 (499)
T COG0554         315 WLRDGLGLIDDASDSEELAESVEDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIARATLESIAYQTRDVLEA  394 (499)
T ss_pred             HHHHhcCccCchhHHHHHHhccCCCCceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988778888899999988889999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q psy9709         500 Y  500 (500)
Q Consensus       500 ~  500 (500)
                      |
T Consensus       395 M  395 (499)
T COG0554         395 M  395 (499)
T ss_pred             H
Confidence            7

>PLN02295 glycerol kinase

Probab=100.00  E-value=5.7e-62  Score=517.32  Aligned_cols=341  Identities=51%  Similarity=0.912  Sum_probs=293.5

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCC----eeE
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD----IVT  229 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~----I~~  229 (500)
                      |+||||+|||++|+++||.+ |++++..+.+++..++++||.||||++||++++++++++++++   +.++++    |.+
T Consensus         1 ~vlgID~GTts~Ka~l~d~~-G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~---~~~~~~i~~~i~a   76 (512)
T PLN02295          1 FVGAIDQGTTSTRFIIYDRD-ARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKA---AAKGHNVDSGLKA   76 (512)
T ss_pred             CEEEEecCCCceEEEEECCC-CCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHc---CCCccccccceEE
Confidence            57999999999999999975 9999999999998889999999999999999999999999863   445555    899


Q ss_pred             EEEcCCCceeEEEe-CCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHH
Q psy9709         230 LGITNQRETTVVWD-LNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVR  308 (500)
Q Consensus       230 I~vs~~~~~~v~~d-~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~  308 (500)
                      |++|+|++++++|| + +|+|++|+|+|+|.|+.++++++.+..+. ..+.+++.||.++++.++++||+||++|+||+|
T Consensus        77 Ig~s~q~~~~v~~dd~-~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~-~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~  154 (512)
T PLN02295         77 IGITNQRETTVAWSKS-TGRPLYNAIVWMDSRTSSICRRLEKELSG-GRKHFVETCGLPISTYFSATKLLWLLENVDAVK  154 (512)
T ss_pred             EEEecCcceEEEEECC-CCCCcccceeccccchHHHHHHHHhhccc-hhHHHHHhhCCcCCcccHHHHHHHHHhcCHHHH
Confidence            99999999999995 6 79999999999999999999999876531 124566899999999999999999999999999


Q ss_pred             HHhhcccccccchhHHHHHhhcCCC---eeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec
Q psy9709         309 RAIKENRCLFGTVDTWLVWNLTGRT---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS  385 (500)
Q Consensus       309 ~~~~~~~~~~~~~~dyi~~~LTg~g---~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~  385 (500)
                      ++++.+..+|++++|||.|+|||..   ++++|+|+|+++++||+++++|++++++.+||+.++||+++++++++|++..
T Consensus       155 ~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~As~t~l~D~~~~~W~~ell~~~gi~~~~lP~l~~~~~~~G~v~~  234 (512)
T PLN02295        155 EAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSNSEVIGTIAK  234 (512)
T ss_pred             HhhhcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHHhHHhhccCcccCcCCHHHHHHcCCCHHHCCCcccCccceecccc
Confidence            8875455689999999999999310   7899999999999999999999999999999999999999999999997422


Q ss_pred             C-------------------------Ccce-----E--EEEEee-------------------cCCCCceeeechhhhch
Q psy9709         386 N-------------------------NGLV-----T--TVAYQF-------------------GPDATPIYALEGSIAVA  414 (500)
Q Consensus       386 ~-------------------------~G~~-----~--~~~~~~-------------------~~~~p~~~~~~g~~~~~  414 (500)
                      .                         .|..     |  .+....                   +...|+.|.++++++++
T Consensus       235 ~~a~~g~pV~~g~~D~~aa~~G~G~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  314 (512)
T PLN02295        235 GWPLAGVPIAGCLGDQHAAMLGQRCRPGEAKSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIA  314 (512)
T ss_pred             ccccCCCcEEEEechHHHHHhhCcCCCCCeEEEEcccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhh
Confidence            1                         0100     0  000000                   01116789999999999


Q ss_pred             hHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q psy9709         415 GAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTR  494 (500)
Q Consensus       415 G~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~  494 (500)
                      |.+++|+++.++...+++++++++++.+++++++|+|||.|+|+|+||+++||+|+||+..|+++||+||++|||||.+|
T Consensus       315 G~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r  394 (512)
T PLN02295        315 GAAVQWLRDNLGIIKSASEIEALAATVDDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIARAVLESMCFQVK  394 (512)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHhCCCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999988643457777888877788889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC
Q psy9709         495 DILELY  500 (500)
Q Consensus       495 ~~~~~~  500 (500)
                      +++|.|
T Consensus       395 ~~l~~l  400 (512)
T PLN02295        395 DVLDAM  400 (512)
T ss_pred             HHHHHH
Confidence            999864

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=100.00  E-value=3.9e-61  Score=510.28  Aligned_cols=339  Identities=53%  Similarity=0.901  Sum_probs=294.0

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCC--CeeEEE
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD--DIVTLG  231 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~--~I~~I~  231 (500)
                      +++|||+|||++|+++||.+ |++++..+++++...+.+||.|||+++||++++++++++++++   +....  +|.+|+
T Consensus         3 ~~lgiDiGTts~Ka~l~d~~-G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~---~~~~~~~~I~aIg   78 (504)
T PTZ00294          3 YIGSIDQGTTSTRFIIFDEK-GNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKL---REKGPSFKIKAIG   78 (504)
T ss_pred             EEEEEecCCCceEEEEECCC-CCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHc---CCCCccCceEEEE
Confidence            89999999999999999975 9999999999988888899999999999999999999998764   33344  799999


Q ss_pred             EcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHh
Q psy9709         232 ITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAI  311 (500)
Q Consensus       232 vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~  311 (500)
                      +|+|++++++||+++|+||+|+++|+|.|+.++++++.+..+.  .+.+++.||.++++.++++||+||++|+|++|+++
T Consensus        79 is~q~~~~v~~D~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~--~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~  156 (504)
T PTZ00294         79 ITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNELTKKYGG--SNFFQKITGLPISTYFSAFKIRWMLENVPAVKDAV  156 (504)
T ss_pred             eecCcceEEEEECCCCCCcccceeecchhhHHHHHHHHhhcCc--chHHHHhhCCcCCccchHHHHHHHHhcCHHHHHhh
Confidence            9999999999987459999999999999999999999887642  24566899999999999999999999999999988


Q ss_pred             hcccccccchhHHHHHhhcCCC--eeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC---
Q psy9709         312 KENRCLFGTVDTWLVWNLTGRT--CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN---  386 (500)
Q Consensus       312 ~~~~~~~~~~~dyi~~~LTg~g--~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~---  386 (500)
                      +++..++++++|||.|+||  |  ++++|+++|++|++||+++++|++++++.+||+.++||+|+++++++|.+...   
T Consensus       157 ~~~~~~~~~~~dyl~~~LT--G~~~~~~d~s~As~tgl~D~~~~~W~~~ll~~~gi~~~~LP~v~~~~~~~G~l~~~~~~  234 (504)
T PTZ00294        157 KEGTLLFGTIDTWLIWNLT--GGKSHVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEIKSSSENFGTISGEAVP  234 (504)
T ss_pred             hcCCeEEEcHHHHHHHHhc--CCceEEEEhhhhHHhhccCcccCccCHHHHHHhCCCHHHCCCccCCccccCccchhhcC
Confidence            6224468899999999999  7  89999999999999999999999999999999999999999999999974210   


Q ss_pred             -------------------------Cc-------ceEEEEEeec-------------------CCCCceeeechhhhchh
Q psy9709         387 -------------------------NG-------LVTTVAYQFG-------------------PDATPIYALEGSIAVAG  415 (500)
Q Consensus       387 -------------------------~G-------~~~~~~~~~~-------------------~~~p~~~~~~g~~~~~G  415 (500)
                                               .|       ....+....+                   ...|+.|.++++++++|
T Consensus       235 ~~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  314 (504)
T PTZ00294        235 LLEGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAG  314 (504)
T ss_pred             CCCCCcEEEEecHHHHHHHhCcCCCCCceEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhhH
Confidence                                     01       0001011010                   01133788899999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9709         416 AAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRD  495 (500)
Q Consensus       416 ~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~  495 (500)
                      .+++|+++.++...+++.+++++++++++++++|+|||.|+|+|++|+++||+|+||+.+|+++||+||++|||||.+|+
T Consensus       315 ~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i~rAvlEgia~~~r~  394 (504)
T PTZ00294        315 AGVEWLRDNMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIVRAALEAIALQTND  394 (504)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999886545677888888888888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhC
Q psy9709         496 ILELY  500 (500)
Q Consensus       496 ~~~~~  500 (500)
                      ++|.|
T Consensus       395 ~~~~l  399 (504)
T PTZ00294        395 VIESM  399 (504)
T ss_pred             HHHHH
Confidence            99864

>PRK00047 glpK glycerol kinase; Provisional

Probab=100.00  E-value=2.8e-61  Score=510.98  Aligned_cols=344  Identities=47%  Similarity=0.791  Sum_probs=296.9

Q ss_pred             cccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709         149 QTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV  228 (500)
Q Consensus       149 ~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~  228 (500)
                      |+|++|+||||+|||++|+++||.+ |++++..+.+++...+.+||.|||+++||+++++++++++++   .+.++++|.
T Consensus         1 ~~m~~~~lgiD~GTts~Ka~l~d~~-g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I~   76 (498)
T PRK00047          1 MMMKKYILALDQGTTSSRAIIFDHD-GNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAK---AGISPDQIA   76 (498)
T ss_pred             CCccCEEEEEecCCCceEEEEECCC-CCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCChhHee
Confidence            4566799999999999999999975 999999999998888899999999999999999999999875   456677899


Q ss_pred             EEEEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHH
Q psy9709         229 TLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVR  308 (500)
Q Consensus       229 ~I~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~  308 (500)
                      +||+++|++++++||+++|+|++|+|+|+|.|+.++++++.+...   .+++++.+|.++++.++++||+||++|+||+|
T Consensus        77 ~Igis~~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~  153 (498)
T PRK00047         77 AIGITNQRETTVVWDKETGRPIYNAIVWQDRRTADICEELKRDGY---EDYIREKTGLVIDPYFSGTKIKWILDNVEGAR  153 (498)
T ss_pred             EEEEecCcceEEEEECCCCcCCcccceecccchHHHHHHHHhccc---hhhHHHhhCCCCCccchHHHHHHHHHcCHhHH
Confidence            999999999999999635999999999999999999999987622   24588999999999999999999999999999


Q ss_pred             HHhhcccccccchhHHHHHhhcCCCe-eeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecCC
Q psy9709         309 RAIKENRCLFGTVDTWLVWNLTGRTC-HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNN  387 (500)
Q Consensus       309 ~~~~~~~~~~~~~~dyi~~~LTg~g~-~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~~  387 (500)
                      +++.++..+|++++|||.|+||| |+ +++|+|+|+++++||+++++|++++++.+||+.++||+++++++++|.+....
T Consensus       154 ~~~~~~~~~~~~~~dyl~~~LTG-~~~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~  232 (498)
T PRK00047        154 ERAEKGELLFGTIDTWLVWKLTG-GKVHVTDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPSSEVYGKTNPYG  232 (498)
T ss_pred             HHHhcCCeEEeChHHhHhhhhcC-CCeeEeechHHhhhhccccccCccCHHHHHhcCCCHHHCCCccCCccccccccccc
Confidence            99874445688999999999995 34 89999999999999999999999999999999999999999999999643211


Q ss_pred             ----------------------c------------ceEEEEEeec-C--------------CCCc--eeeechhhhchhH
Q psy9709         388 ----------------------G------------LVTTVAYQFG-P--------------DATP--IYALEGSIAVAGA  416 (500)
Q Consensus       388 ----------------------G------------~~~~~~~~~~-~--------------~~p~--~~~~~g~~~~~G~  416 (500)
                                            |            ....+....+ .              ..++  .|..+++++++|.
T Consensus       233 ~l~~g~pV~~g~~D~~aa~~G~G~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~  312 (498)
T PRK00047        233 FFGGEVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWGIDGKVVYALEGSIFVAGS  312 (498)
T ss_pred             cCCCCceEEEEccHHHHHHHhCcCCCCCceEEeeccceEEEEecCCccccCCCCceeEEEEEcCCCcEEEEEeeHhhHHH
Confidence                                  1            0001011110 0              1133  5888899999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9709         417 AVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDI  496 (500)
Q Consensus       417 ~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~  496 (500)
                      +++|+++.++....+++++++++..+++++++|+|||.|+|+|+||+++||+|+||+.+|+++||+||++|||||.+|++
T Consensus       313 ~l~W~~~~~~~~~~~~~~~~~a~~~~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~r~~  392 (498)
T PRK00047        313 AIQWLRDGLKIISDASDSEALARKVEDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHIIRATLESIAYQTRDV  392 (498)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHhcCCCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999998864345667788887778888999999999999999999999999999999999999999999999999999


Q ss_pred             HHhC
Q psy9709         497 LELY  500 (500)
Q Consensus       497 ~~~~  500 (500)
                      +|.|
T Consensus       393 ~e~l  396 (498)
T PRK00047        393 LDAM  396 (498)
T ss_pred             HHHH
Confidence            9864

>PRK15027 xylulokinase; Provisional

Probab=100.00  E-value=4.8e-60  Score=499.89  Aligned_cols=328  Identities=24%  Similarity=0.364  Sum_probs=288.8

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      ++||||+|||++|+++||.+ |++++..+.+++...+.+|+.|||+++||+++++++++++++.     ..++|.+|++|
T Consensus         1 ~~lgID~GTts~Ka~l~d~~-G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~-----~~~~I~aI~is   74 (484)
T PRK15027          1 MYIGIDLGTSGVKVILLNEQ-GEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH-----SLQDVKALGIA   74 (484)
T ss_pred             CEEEEEecccceEEEEEcCC-CCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC-----CccceeEEEEe
Confidence            47899999999999999975 9999999999988788899999999999999999999998752     34679999999


Q ss_pred             CCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhhc
Q psy9709         234 NQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKE  313 (500)
Q Consensus       234 ~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~  313 (500)
                      +|+++++++|+ +|+|++|+++|+|.|+.++++++.+..+     .+++.+|.++++.++++||+|+++|+||+|++++ 
T Consensus        75 ~q~~~~v~~D~-~g~~l~p~i~w~D~R~~~~~~~l~~~~~-----~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~-  147 (484)
T PRK15027         75 GQMHGATLLDA-QQRVLRPAILWNDGRCAQECALLEARVP-----QSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQID-  147 (484)
T ss_pred             cCCCceEEECC-CcCCccccccccCccHHHHHHHHHHhcc-----hhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhh-
Confidence            99999999999 7999999999999999999999987654     2567899999999999999999999999999997 


Q ss_pred             ccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC----Ccc
Q psy9709         314 NRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN----NGL  389 (500)
Q Consensus       314 ~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~----~G~  389 (500)
                         +|++++|||.|+||  |++++|+++|+++++||+++++|++++++.+||+.++||+++++++++|++...    .|+
T Consensus       148 ---~~~~~~dyl~~~LT--G~~~~d~s~as~t~l~d~~~~~w~~~ll~~~gi~~~~lP~v~~~~~~~G~l~~~~a~~~GL  222 (484)
T PRK15027        148 ---KVLLPKDYLRLRMT--GEFASDMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGALLPEVAKAWGM  222 (484)
T ss_pred             ---hhcChHHHHHhhhc--CCccccHHHhhcccccccccCCCcHHHHHHhCCCHHHCCCCCCCccccccccHHHHHHhCC
Confidence               89999999999999  789999999999999999999999999999999999999999999999984210    010


Q ss_pred             ---------------------------------eEEEEEe--------------ecCCCCceeeechhhhchhHHHHHHH
Q psy9709         390 ---------------------------------VTTVAYQ--------------FGPDATPIYALEGSIAVAGAAVKWLR  422 (500)
Q Consensus       390 ---------------------------------~~~~~~~--------------~~~~~p~~~~~~g~~~~~G~~~~w~~  422 (500)
                                                       ...+...              ..+..|+.|.+++.+.++|.+++|++
T Consensus       223 ~~~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~  302 (484)
T PRK15027        223 ATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWAA  302 (484)
T ss_pred             CCCeEEecccHHHHHHhccCcccCCcEEEEecCceEEEEecCCcccCchhceeecceecCCceEEEEEehhhHHHHHHHH
Confidence                                             0000000              01123678888899999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         423 DNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       423 ~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      +.++. ..++++.++++++| ++++++|+|||.|+|+|++|+++||+|+||+.+|+++||+||++|||||.+|+++|.|
T Consensus       303 ~~~~~-~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~l~rAvlEgia~~~~~~~~~l  380 (484)
T PRK15027        303 KLTGL-SNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVV  380 (484)
T ss_pred             HHhCC-ccHHHHHHHHhhCCCCCCceEEecccccCCCcCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98864 34677766777766 8899999999999999999999999999999999999999999999999999999864

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=100.00  E-value=2e-59  Score=497.64  Aligned_cols=331  Identities=23%  Similarity=0.375  Sum_probs=289.7

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      |+||||+|||++|+++||.+ |++++..+.+++...+.+|+.+||+++||+.+++++++++++.   +.+ ++|.+||++
T Consensus         1 ~~lgiDiGtt~~K~~l~d~~-g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~---~~~-~~I~~Igis   75 (505)
T TIGR01314         1 YMIGVDIGTTSTKAVLFEEN-GKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINL---EDE-DEILFVSFS   75 (505)
T ss_pred             CEEEEeccccceEEEEEcCC-CCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhC---CCc-CceEEEEEe
Confidence            57999999999999999974 9999999998887788899999999999999999999998752   333 679999999


Q ss_pred             CCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhhc
Q psy9709         234 NQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKE  313 (500)
Q Consensus       234 ~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~  313 (500)
                      +|++++++||+ +|+|++|+++|+|.|+.++++++.+.++.   +++++.+|.++++.++++||+|+++|+|++|++++ 
T Consensus        76 ~~~~~~v~~D~-~g~pl~~~i~w~D~R~~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~-  150 (505)
T TIGR01314        76 TQMHSLIAFDE-NWQPLTRLITWADNRAVKYAEQIKESKNG---FDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAA-  150 (505)
T ss_pred             cccceeEEECC-CcCCcccceeccccchHHHHHHHHhhcCH---HHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhc-
Confidence            99999999999 79999999999999999999999887653   56889999999999999999999999999999987 


Q ss_pred             ccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec----CCcc
Q psy9709         314 NRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS----NNGL  389 (500)
Q Consensus       314 ~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~----~~G~  389 (500)
                         +|++++|||.|+||  |++++|+|+|+++++||+++++|++++++.+||++++||+|+++++++|++..    ..|+
T Consensus       151 ---~~l~~~dyl~~~LT--G~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~l~~~g~~iG~l~~~~a~~~GL  225 (505)
T TIGR01314       151 ---KYLEIKGYIFQRLF--GTYKIDYSTASATGMFNLFELDWDKEALELTGIKESQLPKLVPTTEIEENLPHEYAKKMGI  225 (505)
T ss_pred             ---EEECHHHHHHHHHc--CCceeEhhhhhhhcceeCCCCCCCHHHHHhcCCCHHHCCCCcCcccccCCcCHHHHHHhCC
Confidence               89999999999999  78999999999999999999999999999999999999999999999997432    1111


Q ss_pred             e------------------------EEEEEeecC-----------------------CCCceeeechhhhchhHHHHHHH
Q psy9709         390 V------------------------TTVAYQFGP-----------------------DATPIYALEGSIAVAGAAVKWLR  422 (500)
Q Consensus       390 ~------------------------~~~~~~~~~-----------------------~~p~~~~~~g~~~~~G~~~~w~~  422 (500)
                      .                        .......|+                       ..++.|..+++++++|.+++||+
T Consensus       226 ~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~  305 (505)
T TIGR01314       226 QSSTPFVIGASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVIDKPKTDEKGRIFCYALTKEHWVIGGPVNNGGDVLRWAR  305 (505)
T ss_pred             CCCCeEEEeccHHHHHHhcCCCCCCCcEEEEechhheeeeccCcCccCCCCceEEEEecCCcEEEEeeecchHhHHHHHH
Confidence            0                        000000110                       01246788888999999999999


Q ss_pred             HHcCCC----------CCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy9709         423 DNLNLM----------DNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICF  491 (500)
Q Consensus       423 ~~~~~~----------~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~  491 (500)
                      +.+...          +.|+.++++++++| ++++++|+|||.|+|+|++|+++||+|+||+.+|+++||+||++||+||
T Consensus       306 ~~~~~~~~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~l~rAvlEgia~  385 (505)
T TIGR01314       306 DEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHMIRAALEGVIY  385 (505)
T ss_pred             HHhhhhhhhhhhhcCCCHHHHHHHHHhhCCCCCCceEEecccccCCCCCCCCCccEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            877421          34788899888877 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q psy9709         492 QTRDILEL  499 (500)
Q Consensus       492 ~~~~~~~~  499 (500)
                      .++++++.
T Consensus       386 ~~~~~~~~  393 (505)
T TIGR01314       386 NLYTVALA  393 (505)
T ss_pred             HHHHHHHH
Confidence            99988764

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>TIGR01311 glycerol_kin glycerol kinase

Probab=100.00  E-value=1.1e-58  Score=490.58  Aligned_cols=339  Identities=53%  Similarity=0.884  Sum_probs=295.6

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      +|++|||+|||++|+++||.+ |+++...+.+++...+.+||.+||+++||+.+++++++++++   .++++++|.+||+
T Consensus         1 ~~~lgiDiGtt~iKa~l~d~~-g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~i~aIgi   76 (493)
T TIGR01311         1 PYILAIDQGTTSSRAIVFDKD-GNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAK---AGIKPDDIAAIGI   76 (493)
T ss_pred             CeEEEEecCCCceEEEEECCC-CCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCChhheeEEEE
Confidence            478999999999999999975 999999999998888899999999999999999999999876   4566778999999


Q ss_pred             cCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhh
Q psy9709         233 TNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIK  312 (500)
Q Consensus       233 s~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~  312 (500)
                      ++|++++++||+++|+|++|+++|+|.|+.++++++.+.++.   +.+++.+|.++++.++++||+|+++|+||+|++++
T Consensus        77 s~~~~~~v~~D~~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~~~  153 (493)
T TIGR01311        77 TNQRETTVVWDKATGKPLYNAIVWQDRRTASICEELKAEGYG---EFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAE  153 (493)
T ss_pred             ecCcceEEEEECCCCcCcccceeecccchHHHHHHHHHhcch---HHHHHHhCCcCCccchHHHHHHHHhcCHHHHHHhh
Confidence            999999999997349999999999999999999999887653   57889999999999999999999999999999886


Q ss_pred             cccccccchhHHHHHhhcCCC--eeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC----
Q psy9709         313 ENRCLFGTVDTWLVWNLTGRT--CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN----  386 (500)
Q Consensus       313 ~~~~~~~~~~dyi~~~LTg~g--~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~----  386 (500)
                      +++.+|++++|||.|+||  |  +.++|+++|+++++||+++++|++++++.+|+++++||+|+++++++|.+...    
T Consensus       154 ~~~~~~~~~~dyl~~~Lt--G~~~~~~d~s~As~t~l~d~~~~~W~~~~l~~~gi~~~~lP~l~~~g~~~G~v~~~~l~~  231 (493)
T TIGR01311       154 RGELLFGTIDTWLIWNLT--GGKVHVTDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGYTDPGLLGA  231 (493)
T ss_pred             cCCeEEECHhHhhhhhcc--CCceEEeccchhhhhhcccccccccCHHHHHHcCCCHHHCCCccCCccceecccccccCC
Confidence            333468899999999999  7  89999999999999999999999999999999999999999999999974321    


Q ss_pred             -----------------Ccc-----e-----E--EEEEeecC---------------CCCc---eeeechhhhchhHHHH
Q psy9709         387 -----------------NGL-----V-----T--TVAYQFGP---------------DATP---IYALEGSIAVAGAAVK  419 (500)
Q Consensus       387 -----------------~G~-----~-----~--~~~~~~~~---------------~~p~---~~~~~g~~~~~G~~~~  419 (500)
                                       .|.     .     +  .+....+.               ..++   .|..++++.++|.+++
T Consensus       232 g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~  311 (493)
T TIGR01311       232 EIPITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGGKKPVYALEGSVFVAGAAVQ  311 (493)
T ss_pred             CceEEEecccHHHHHhhCcCCCCCceEEeecccceEeeecCCccccCCCCceEEEEEecCCCCceEEEEeehhhhHHHHH
Confidence                             010     0     0  00111110               1122   3778888999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy9709         420 WLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL  499 (500)
Q Consensus       420 w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~  499 (500)
                      |+++.++....++.+++++++++++++++|+|||.|+|+|++|+++||+|+|++.+|+++||+||++|||||.+|++++.
T Consensus       312 W~~~~~~~~~~~~~~~~~a~~~~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~  391 (493)
T TIGR01311       312 WLRDNLKLIKHAAESEALARSVEDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIARAALEAIAFQTRDVLEA  391 (493)
T ss_pred             HHHHHhCCCCCHHHHHHHHhcCCCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999875456778888887778888999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q psy9709         500 Y  500 (500)
Q Consensus       500 ~  500 (500)
                      |
T Consensus       392 l  392 (493)
T TIGR01311       392 M  392 (493)
T ss_pred             H
Confidence            5

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.5e-57  Score=478.44  Aligned_cols=338  Identities=28%  Similarity=0.435  Sum_probs=292.6

Q ss_pred             ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709         150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT  229 (500)
Q Consensus       150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~  229 (500)
                      +++.++||||+|||++|+++||.+.|++++..+..++..++++||.|||+++||++++++++++.++   ..++..+|.+
T Consensus         1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~---~~~~~~~I~a   77 (502)
T COG1070           1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE---SKIDPDAIAA   77 (502)
T ss_pred             CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHh---cccChhhceE
Confidence            4677999999999999999999854899999999999888999999999999999999999999986   3467789999


Q ss_pred             EEEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHH
Q psy9709         230 LGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRR  309 (500)
Q Consensus       230 I~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  309 (500)
                      |++++|+|+++++|+ +|+||+|+|+|+|.|+.++++++.+..+.   ++.+..+|.++.+.++++||+|+++|+||+|+
T Consensus        78 I~is~~~~g~vllD~-~g~~L~~~i~w~D~R~~~~~~~l~~~~~~---~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~~~  153 (502)
T COG1070          78 IGISGQGHGLVLLDA-NGEPLRPAILWNDTRAAEEVEELEERLGG---EALYARTGLQAMPGFTAPKLLWLKENEPDLFA  153 (502)
T ss_pred             EEEeccccceEEECC-CCCCccccceecchhhHHHHHHHHhhccc---hhhhhhcCCCcCccccHHHHHHHHhcCcHHHH
Confidence            999999999999999 69999999999999999999999998774   56677799999999999999999999999999


Q ss_pred             HhhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCC-CCCCCcccCCcccceeec---
Q psy9709         310 AIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPP-TILPEIRSSSEIYGKVHS---  385 (500)
Q Consensus       310 ~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~-~~lP~i~~~~~~~G~~~~---  385 (500)
                      |++    +|++++|||.|+||  |++++|+|+|++|++||+++++|+.++++.+|+++ ++||+++++++++|.+..   
T Consensus       154 k~~----~il~~~dyl~~rLT--G~~~~e~s~as~t~l~d~~~~~w~~~~l~~~gl~~~~~lp~vv~~g~~~G~l~~e~A  227 (502)
T COG1070         154 KAA----KILLIKDYLRYRLT--GEFATEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPVVEPGEVLGTLTPEAA  227 (502)
T ss_pred             hhh----heechHHHHHHHHh--CCcccccccccccccccccccccCHHHHHHcCCChHHhCCCccCccceeccccHHHH
Confidence            998    89999999999999  88999999999999999999999999999999995 999999999999997431   


Q ss_pred             -CCcc----------------------------eE----EEEEe--e----c----------CCCCceeeechhhhchhH
Q psy9709         386 -NNGL----------------------------VT----TVAYQ--F----G----------PDATPIYALEGSIAVAGA  416 (500)
Q Consensus       386 -~~G~----------------------------~~----~~~~~--~----~----------~~~p~~~~~~g~~~~~G~  416 (500)
                       ..|+                            ..    +....  .    .          ...|+.|...+..+++|.
T Consensus       228 ~~~Gl~~~~pV~~G~~D~~~a~lg~g~~~~g~~~~~~gts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (502)
T COG1070         228 EELGLPAGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATDKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGW  307 (502)
T ss_pred             HHhCCCCCCeEEECCchHHHHhccCCCcCCCcEEEEeccccEEeeeccccccCCccceeeecccCCCeEEEEEEecccHH
Confidence             1111                            00    00000  0    0          012456777888899999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHh--cC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q psy9709         417 AVKWLRDNLNLMDNVRETESLAEK--VM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQT  493 (500)
Q Consensus       417 ~~~w~~~~~~~~~~~~~l~~~~~~--~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~  493 (500)
                      +++|+++.+.....+.++...+..  .+ ++.+++|.|||.|||.|++++..||.|+|+...|+++|++||++||+||.+
T Consensus       308 ~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~l~ravlEgva~~l  387 (502)
T COG1070         308 LLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHLARAVLEGVAFAL  387 (502)
T ss_pred             HHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCccceeEEEccccccCHHHHHHHHHHHHHHHH
Confidence            999999999764344443333322  23 778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC
Q psy9709         494 RDILELY  500 (500)
Q Consensus       494 ~~~~~~~  500 (500)
                      +..++.|
T Consensus       388 ~~~~~~l  394 (502)
T COG1070         388 ADGLEAL  394 (502)
T ss_pred             HHHHHHH
Confidence            9988864

>PRK04123 ribulokinase; Provisional

Probab=100.00  E-value=6.2e-57  Score=483.20  Aligned_cols=339  Identities=19%  Similarity=0.227  Sum_probs=287.9

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccc------cCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTI------SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR  224 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~------~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~  224 (500)
                      |++|+||||+||||+|+++||.++|+++...+.+++..      .+++||.||||++||+++++++++++++   .++.+
T Consensus         1 ~~~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~   77 (548)
T PRK04123          1 MMAYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKE---AGVDP   77 (548)
T ss_pred             CCcEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHH---cCCCh
Confidence            34689999999999999999952499999998888743      4889999999999999999999999876   35566


Q ss_pred             CCeeEEEEcCCCceeEEEeCCCCcccc-----------cceeeccCCCHHHHHHHHhhCCCCccchhhcc-cCCCCchhc
Q psy9709         225 DDIVTLGITNQRETTVVWDLNTGEPLY-----------NAIVWSDTRADNIVDQVLAKFPDQDKDYLKPI-CGLPVSPYF  292 (500)
Q Consensus       225 ~~I~~I~vs~~~~~~v~~d~~~G~~l~-----------~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~-tG~~~~~~~  292 (500)
                      .+|.+||+|+|++++++||+ +|+|++           |+|+|+|.|+.++++++.+..+. ..+++++. +|..+++.+
T Consensus        78 ~~I~aIgis~~~~~~v~~D~-~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~~  155 (548)
T PRK04123         78 AAVVGIGVDFTGSTPAPVDA-DGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHE-RGEADLSRYIGGIYSSEW  155 (548)
T ss_pred             hhEEEEEEecccceeEEECC-CCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhcc-chhhHHHHhcCCccCcch
Confidence            78999999999999999999 799998           89999999999999999876531 01346654 488889999


Q ss_pred             hHHHHHHHHhhChHHHHHhhcccccccchhHHHHHhhcCCC-----eeeeecccccccccccCC-CCCCcHHHHhhcC--
Q psy9709         293 SALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT-----CHVTDVTNASRTMLMNID-SLQWDPLLCKYFA--  364 (500)
Q Consensus       293 ~~~kl~Wl~~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g-----~~~~d~s~as~t~l~d~~-~~~W~~~ll~~~g--  364 (500)
                      +++||+||++|+||+|++++    +|++++|||.|+||  |     ..++|.++++.+++||.+ +..|++++++.+|  
T Consensus       156 ~~~kl~Wl~~~~P~~~~~~~----~~l~~~dyl~~~LT--G~~~~~~~~~~~~~as~~~~~d~~~~~~~s~ell~~~g~~  229 (548)
T PRK04123        156 FWAKILHVLREDPAVYEAAA----SWVEACDWVVALLT--GTTDPQDIVRSRCAAGHKALWHESWGGLPSADFFDALDPL  229 (548)
T ss_pred             HHHHHHHHHhhCHHHHHHHh----HhccHHHHHHHHHh--CCCCccccccchhhcccccccccccCCCCCHHHHHHhccc
Confidence            99999999999999999987    89999999999999  6     677999999999999999 5666999999996  


Q ss_pred             ----CCCCCCCCcccCCcccceeecC----Ccc---------------------------------eEEEEEee------
Q psy9709         365 ----VPPTILPEIRSSSEIYGKVHSN----NGL---------------------------------VTTVAYQF------  397 (500)
Q Consensus       365 ----l~~~~lP~i~~~~~~~G~~~~~----~G~---------------------------------~~~~~~~~------  397 (500)
                          ++.++||+++++++++|.+...    .|+                                 ...+....      
T Consensus       230 l~~~i~~~llP~l~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~g~~~g~~~~~~GTs~~~~~~~~~~~~~  309 (548)
T PRK04123        230 LARGLRDKLFTETWTAGEPAGTLTAEWAQRLGLPEGVAVSVGAFDAHMGAVGAGAEPGTLVKVMGTSTCDILLADKQRAV  309 (548)
T ss_pred             hhhhhHhhcCCccccCCCcccccCHHHHHHhCCCCCCeEEecchhhhhhhcccCcCCCcEEEEecCceEEEEecCCcccc
Confidence                8889999999999999984320    110                                 00000000      


Q ss_pred             --------cCCCCceeeechhhhchhHHHHHHHHHcCC-----------CCCHHHHHHHHHhcC-CCCCeEEeccCCCCC
Q psy9709         398 --------GPDATPIYALEGSIAVAGAAVKWLRDNLNL-----------MDNVRETESLAEKVM-TTGDVYFVPAFGGLY  457 (500)
Q Consensus       398 --------~~~~p~~~~~~g~~~~~G~~~~w~~~~~~~-----------~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r  457 (500)
                              +...|+.|.++++++++|.+++||++.++.           ...|+.++++++++| ++++++|+|||.|+|
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~f~P~l~Ger  389 (548)
T PRK04123        310 PGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQPPGEHGLVALDWFNGRR  389 (548)
T ss_pred             CceeecccCcccCCeeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhcCCCCCceEEcccccCCC
Confidence                    012356788899999999999999998741           134788888888876 899999999999999


Q ss_pred             CCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         458 APYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       458 ~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      +|++||++||+|+||+.+|+++||+||++||+||.+|+++|.|
T Consensus       390 ~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~e~l  432 (548)
T PRK04123        390 TPLADQRLKGVITGLTLGTDAPDIYRALIEATAFGTRAIMECF  432 (548)
T ss_pred             CCCCCCCCceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999875

>PRK10331 L-fuculokinase; Provisional

Probab=100.00  E-value=8.7e-57  Score=473.40  Aligned_cols=323  Identities=19%  Similarity=0.258  Sum_probs=274.8

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecc--cccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS--TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~--~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      +++||||+|||++|+++||.+ |++++..+.+++  ...+.+||.|||+++||+++++++++++++.     ...+|.+|
T Consensus         2 ~~~lgID~GTt~~Ka~l~d~~-G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~-----~~~~I~~I   75 (470)
T PRK10331          2 DVILVLDCGATNVRAIAVDRQ-GKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL-----TECHIRGI   75 (470)
T ss_pred             ceEEEEecCCCceEEEEEcCC-CcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC-----CccceEEE
Confidence            489999999999999999975 999999988876  3457889999999999999999999998752     24579999


Q ss_pred             EEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHH
Q psy9709         231 GITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRA  310 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  310 (500)
                      ++|+|+++++++|+ +|+|++|+|+|+|.|+.++++++.+..+.   +.+++.+|.++.+.++++||+|+++|+||+|++
T Consensus        76 ~is~~~~~~v~~D~-~G~pl~p~i~w~D~Ra~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~~  151 (470)
T PRK10331         76 TVTTFGVDGALVDK-QGNLLYPIISWKCPRTAAVMENIERYISA---QQLQQISGVGAFSFNTLYKLVWLKENHPQLLEQ  151 (470)
T ss_pred             EEeccccceEEECC-CcCCccCceeecCCCcHHHHHHHHHhcCH---HHHHhhhCCCccccchHHHHHHHHHhCHHHHHH
Confidence            99999999999999 79999999999999999999999887653   568889999998999999999999999999999


Q ss_pred             hhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec----C
Q psy9709         311 IKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS----N  386 (500)
Q Consensus       311 ~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~----~  386 (500)
                      ++    +|++++|||.|+||  |++++|+|+|+++++||+++++|++++++.+||+.++||+|+++++++|++..    .
T Consensus       152 ~~----~~l~~~dyl~~~LT--G~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~a~~  225 (470)
T PRK10331        152 AH----AWLFISSLINHRLT--GEFTTDITMAGTSQMLDIQQRDFSPEILQATGLSRRLFPRLVEAGEQIGTLQPSAAAL  225 (470)
T ss_pred             hh----hhcCHHHHHHHhhc--CccccchhhccceeeeecccCCCCHHHHHHcCCCHHHCCCcccccccccccCHHHHHH
Confidence            87    89999999999999  78999999999999999999999999999999999999999999999998432    1


Q ss_pred             Ccce-----------------------EEEEEeecC---------------------------CCCceeeechhhhchhH
Q psy9709         387 NGLV-----------------------TTVAYQFGP---------------------------DATPIYALEGSIAVAGA  416 (500)
Q Consensus       387 ~G~~-----------------------~~~~~~~~~---------------------------~~p~~~~~~g~~~~~G~  416 (500)
                      .|+.                       .......|+                           ..++.|..++.... |.
T Consensus       226 ~GL~~g~pV~~g~~D~~aa~~g~g~~~g~~~~~~GT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~  304 (470)
T PRK10331        226 LGLPVGIPVISAGHDTQFALFGSGAGQNQPVLSSGTWEILMVRSAQVDTSLLSQYAGSTCELDSQSGLYNPGMQWLA-SG  304 (470)
T ss_pred             hCCCCCCeEEEccccHHHHHhCCCCCCCCEEEecchhhhheeecCCCcccccccccccceeccccCceeeechhhHH-HH
Confidence            1111                       000000110                           01233444333333 44


Q ss_pred             HHHHHHHHcCC-CCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q psy9709         417 AVKWLRDNLNL-MDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTR  494 (500)
Q Consensus       417 ~~~w~~~~~~~-~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~  494 (500)
                      +++|+++.+.. ...|+.+++++++.| ++++++|+|+|.|+|        ||+|+||+.+|+++||+||++|||||++|
T Consensus       305 ~~~W~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~l~rAvlEgia~~~~  376 (470)
T PRK10331        305 VLEWVRKLFWTAETPYQTMIEEARAIPPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHFYRAALEGLTAQLK  376 (470)
T ss_pred             HHHHHHHHhcccCchHHHHHHHHhcCCCCCCceEecccccccC--------ceeEECCCCCcCHHHHHHHHHHHHHHHHH
Confidence            89999998853 245888988888876 889999999999987        99999999999999999999999999999


Q ss_pred             HHHHhC
Q psy9709         495 DILELY  500 (500)
Q Consensus       495 ~~~~~~  500 (500)
                      +++|.|
T Consensus       377 ~~~~~l  382 (470)
T PRK10331        377 RNLQVL  382 (470)
T ss_pred             HHHHHH
Confidence            999864

>TIGR01234 L-ribulokinase L-ribulokinase

Probab=100.00  E-value=1.3e-56  Score=478.74  Aligned_cols=335  Identities=19%  Similarity=0.195  Sum_probs=284.5

Q ss_pred             EEEEEeccCCCceEEEEe-CCCCeEEEEeeeeccc-----ccCC------CCeEEEChHHHHHHHHHHHHHHHHHHHhCC
Q psy9709         154 LIGVIDEGTRTVRFAIIS-ALTQEEVVSHSMDIST-----ISPQ------EGWAEQDPMEILQAVQTTMDRAIEKLSAHG  221 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d-~~~G~vi~~~~~~~~~-----~~~~------~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~  221 (500)
                      |+||||+||||+|+++|| .+ |++++..+.+++.     .++.      +||.||||++||+++++++++++++   .+
T Consensus         2 ~~lgiD~GTss~Ka~l~d~~~-G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~---~~   77 (536)
T TIGR01234         2 YAIGVDFGTLSGRALAVDVAT-GEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAE---LG   77 (536)
T ss_pred             eEEEEecCCCceEEEEEECCC-CcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHH---cC
Confidence            689999999999999999 65 9999999888874     3453      8999999999999999999999986   35


Q ss_pred             CCCCCeeEEEEcCCCceeEEEeCCCCccccc-----------ceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCch
Q psy9709         222 LSRDDIVTLGITNQRETTVVWDLNTGEPLYN-----------AIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSP  290 (500)
Q Consensus       222 ~~~~~I~~I~vs~~~~~~v~~d~~~G~~l~~-----------~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~  290 (500)
                      +++++|++|++|+|++|+++||+ +|+|++|           +|+|+|.|+.++++++.+.... ..+.+++.+|.++++
T Consensus        78 ~~~~~I~aI~~s~q~~s~v~~D~-~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~-~~~~~~~~tG~~~~~  155 (536)
T TIGR01234        78 VDPADVVGIGVDFTACTPAPIDS-DGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHA-PGEVDLSRYGGIISS  155 (536)
T ss_pred             CCHHHEEEEEEecCcceeEEECC-CCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhc-cchhHHHhhCCccCc
Confidence            56678999999999999999999 7999983           9999999999999999876521 025678889999999


Q ss_pred             hchHHHHHHHHhhChHHHHHhhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCC-----
Q psy9709         291 YFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAV-----  365 (500)
Q Consensus       291 ~~~~~kl~Wl~~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl-----  365 (500)
                      .++++||+||++|+||+|+++.    +|++++|||.|+||  |+.++|+++++.+++++...+.|++++++.+|+     
T Consensus       156 ~~~~~kl~Wl~~~~pe~~~~~~----~~l~~~dyl~~~LT--G~~~~d~s~a~~~~l~~~~w~~~~~~~l~~~g~~~~~~  229 (536)
T TIGR01234       156 EWFWAKILQITEEDPAIYQAAD----RWIELADWIVAQLS--GDIRRGRCTAGYKALWHESWGYPSASFFDELNPILNRH  229 (536)
T ss_pred             hhHHHHHHHHHhhChHHHHHHh----hhcCHHHHHHHHHh--CCccccchhcccceeccccccCCCHHHHHHhcchhhhh
Confidence            9999999999999999999987    89999999999999  779999999999998876656669999999985     


Q ss_pred             -CCCCCCCcccCCcccceeec----CCcc----------------------------------eEEEEEeec--------
Q psy9709         366 -PPTILPEIRSSSEIYGKVHS----NNGL----------------------------------VTTVAYQFG--------  398 (500)
Q Consensus       366 -~~~~lP~i~~~~~~~G~~~~----~~G~----------------------------------~~~~~~~~~--------  398 (500)
                       +.++||+|+++++++|.+..    ..|+                                  ...+.....        
T Consensus       230 lp~~~~p~i~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~  309 (536)
T TIGR01234       230 LPDKLFTDIWTAGEPAGTLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQPGALVKIMGTSTCHVLIGDKQRAVPGM  309 (536)
T ss_pred             hhhhcCCceecCCCcccccCHHHHHHhCCCCCCeEEecchhHhhhhhccccccCCcEEEEEccceEEEEecCccccCCce
Confidence             78899999999999997432    0110                                  000000000        


Q ss_pred             ------CCCCceeeechhhhchhHHHHHHHHHcCCC-----------CCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCC
Q psy9709         399 ------PDATPIYALEGSIAVAGAAVKWLRDNLNLM-----------DNVRETESLAEKVM-TTGDVYFVPAFGGLYAPY  460 (500)
Q Consensus       399 ------~~~p~~~~~~g~~~~~G~~~~w~~~~~~~~-----------~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~  460 (500)
                            ...|+.|.++++++++|.+++||++.+...           +.|+.|++.+++.| ++++|+|+|||.|||+|+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~g~~gllflP~l~Ger~P~  389 (536)
T TIGR01234       310 CGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQPSGEHGLVALDWFNGNRSPL  389 (536)
T ss_pred             eeeccCcccCCeeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCeEecchhccCCCCC
Confidence                  012566778888999999999999987421           23788888887776 899999999999999999


Q ss_pred             CCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         461 WRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       461 ~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      +|+++||+|+|++.+|+++||+||++|||||.+|+++|.|
T Consensus       390 ~d~~arG~~~Gl~~~~~~~~~~RAvlEgia~~~~~~l~~l  429 (536)
T TIGR01234       390 VDQRLKGVITGLTLATDAPLLYRALIEATAFGTRMIMETF  429 (536)
T ss_pred             CCCcceEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.

>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase

Probab=100.00  E-value=9.9e-57  Score=479.52  Aligned_cols=329  Identities=21%  Similarity=0.266  Sum_probs=278.9

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  234 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~  234 (500)
                      ++|||+|||++|+++||.+ |++++..+.+++..++.+||.|||+++||+++++++++++++   .+++..+|.+|||++
T Consensus         2 ~lgID~GTts~Ka~l~d~~-G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~---~~~~~~~I~~Igis~   77 (541)
T TIGR01315         2 YIGVDVGTGSARACIIDST-GDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAE---SKVDPNSVKGIGFDA   77 (541)
T ss_pred             EEEEEecCcCEEEEEEcCC-CCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHH---cCCChhheEEEEecc
Confidence            6899999999999999975 999999999998888999999999999999999999999876   456667899999999


Q ss_pred             CCceeEEEeCCCCccc---------ccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhCh
Q psy9709         235 QRETTVVWDLNTGEPL---------YNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVS  305 (500)
Q Consensus       235 ~~~~~v~~d~~~G~~l---------~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p  305 (500)
                      | +++++||+ +|+|+         +|+|+|+|.|+.++++++.+..     +++++.+|.++++.++++||+|+++|+|
T Consensus        78 ~-~s~v~~D~-~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~-----~~~~~~tG~~~~~~~~~~kl~Wl~~~~P  150 (541)
T TIGR01315        78 T-CSLVVLTH-DGEPLPVSKNGGADQNIILWMDHRALAEAEKINATN-----HNLLRYVGGKMSVEMEIPKVLWLKNNMP  150 (541)
T ss_pred             c-ccceEEcC-CCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHH-----HHHHHHhCCeeCcchhHHHHHHHHHhCh
Confidence            9 89999999 69999         8999999999999999997542     3578899999999999999999999999


Q ss_pred             HHHHHhhcccccccchhHHHHHhhcCCCeeeeeccccccccccc---CCCCCCcHHHHhhcCCCC---CCC----CCccc
Q psy9709         306 SVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMN---IDSLQWDPLLCKYFAVPP---TIL----PEIRS  375 (500)
Q Consensus       306 e~~~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d---~~~~~W~~~ll~~~gl~~---~~l----P~i~~  375 (500)
                      |+|+++.    +|++++|||.|+||  |+.++|+++++.+++||   +++++|++++++.+||+.   +.|    |++++
T Consensus       151 e~~~~~~----~~l~~~dyl~~~LT--G~~~~d~~~as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~  224 (541)
T TIGR01315       151 PELFARC----KFFDLTDFLTWRAT--GKEIRSFCSVVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMS  224 (541)
T ss_pred             HHHHHhh----hhcchhhhheeeee--cchhHhHhHHhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCcccC
Confidence            9999987    89999999999999  78999999999888888   699999999999999994   234    99999


Q ss_pred             CCcccce-eecC------------------------CcceE--------------EEEEeec------------------
Q psy9709         376 SSEIYGK-VHSN------------------------NGLVT--------------TVAYQFG------------------  398 (500)
Q Consensus       376 ~~~~~G~-~~~~------------------------~G~~~--------------~~~~~~~------------------  398 (500)
                      +++++|. +.+.                        .|...              ......|                  
T Consensus       225 ~~~~~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~  304 (541)
T TIGR01315       225 PGELVGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTCHMAMTKGPVFVPGV  304 (541)
T ss_pred             CCcccccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccccccCCCCcEEEEecCceEEEEecCCCccCCce
Confidence            9999996 4310                        01100              0001111                  


Q ss_pred             ------CCCCceeeechhhhchhHHHHHHHHHcCCC------------CCHHHHHH----HHHhcC-C-----CCCeEEe
Q psy9709         399 ------PDATPIYALEGSIAVAGAAVKWLRDNLNLM------------DNVRETES----LAEKVM-T-----TGDVYFV  450 (500)
Q Consensus       399 ------~~~p~~~~~~g~~~~~G~~~~w~~~~~~~~------------~~~~~l~~----~~~~~~-~-----~~~l~~~  450 (500)
                            ...|+.|.++++++++|.+++|+++.+...            ..|+.+++    ++++.+ +     ++|++|+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gl~fl  384 (541)
T TIGR01315       305 WGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVY  384 (541)
T ss_pred             eecccCccCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhcccCccccCCCceEEc
Confidence                  013567888999999999999999876411            23544443    344443 3     4799999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEcCCCCCCH---HHHHHHHHHHHHHHHHHHHHhC
Q psy9709         451 PAFGGLYAPYWRKDARGVICGMTQFTTK---GHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       451 P~~~G~r~P~~~~~~~g~f~Gl~~~~~~---~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      |||.|+|+|+|||++||+|+||+.+|++   +||+||++|||||++|+++|.|
T Consensus       385 P~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l  437 (541)
T TIGR01315       385 PDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAM  437 (541)
T ss_pred             cccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999   8999999999999999999875

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.

>PRK10939 autoinducer-2 (AI-2) kinase; Provisional

Probab=100.00  E-value=1.6e-55  Score=469.13  Aligned_cols=332  Identities=20%  Similarity=0.297  Sum_probs=281.4

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccc--cCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~--~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      +|+||||+||||+|+++||.+ |++++..+.+++..  .+.+|+.|||+++||+++++++++++++   .++...+|.+|
T Consensus         3 ~~~lgID~GTts~Ka~l~d~~-G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~---~~~~~~~I~aI   78 (520)
T PRK10939          3 SYLMALDAGTGSIRAVIFDLN-GNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQK---AGIPASDIAAV   78 (520)
T ss_pred             cEEEEEecCCCceEEEEECCC-CCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHH---cCCCccceEEE
Confidence            499999999999999999975 99999988887644  3568999999999999999999999876   35566789999


Q ss_pred             EEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHH
Q psy9709         231 GITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRA  310 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  310 (500)
                      ++|+|++++++||+ +|+|+++ +.|.|.|+.++++++.+..+. ..+++++.+|.++ +.++++||+|+++|+||+|++
T Consensus        79 ~~s~~~~~~v~~D~-~g~pl~~-~~~~D~Ra~~~~~~l~~~~~~-~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe~~~~  154 (520)
T PRK10939         79 SATSMREGIVLYDR-NGTEIWA-CANVDARASREVSELKELHNN-FEEEVYRCSGQTL-ALGALPRLLWLAHHRPDIYRQ  154 (520)
T ss_pred             EEECCcccEEEECC-CCCEeeC-CcCCCcccHHHHHHHHHhcCh-HHHHHHHHhCCcC-CcchHHHHHHHHHcCcHHHHH
Confidence            99999999999999 7999976 578999999999999876542 1246788999875 678999999999999999999


Q ss_pred             hhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec----C
Q psy9709         311 IKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS----N  386 (500)
Q Consensus       311 ~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~----~  386 (500)
                      +.    +|++++|||.|+||  |++++|+|+|+++++||+++++|++++++.+||+.++||+|+++++++|.+..    .
T Consensus       155 ~~----~~~~~~dyl~~~LT--G~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~lP~i~~~g~~~G~v~~~~A~~  228 (520)
T PRK10939        155 AH----TITMISDWIAYMLS--GELAVDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVKETGTVLGHVTAKAAAE  228 (520)
T ss_pred             hh----eEechhHhhhheee--CceeeEhhhhhceeeeecCCCCCCHHHHHHcCCCHHHCCCCccCCceeeeecHHHHHh
Confidence            87    89999999999999  78999999999999999999999999999999999999999999999998431    1


Q ss_pred             Ccce--------------------------------EE--EEEee--------------cCCCCceeeechhhhchhHHH
Q psy9709         387 NGLV--------------------------------TT--VAYQF--------------GPDATPIYALEGSIAVAGAAV  418 (500)
Q Consensus       387 ~G~~--------------------------------~~--~~~~~--------------~~~~p~~~~~~g~~~~~G~~~  418 (500)
                      .|+.                                |+  +....              .+..|+.|.+++.++++|.++
T Consensus       229 ~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l  308 (520)
T PRK10939        229 TGLRAGTPVVMGGGDVQLGCLGLGVVRPGQTAVLGGTFWQQVVNLPAPVTDPNMNIRINPHVIPGMVQAESISFFTGLTM  308 (520)
T ss_pred             hCCCCCCcEEEeCchHHHHHhhcCcccCCcEEEeecCcceeEEeccccccCccccceeceeeeCCcceEeeeeccceeee
Confidence            1110                                00  00000              011256788889999999999


Q ss_pred             HHHHHHcCCC----------CCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCC---CHHHHHHH
Q psy9709         419 KWLRDNLNLM----------DNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFT---TKGHIIRA  484 (500)
Q Consensus       419 ~w~~~~~~~~----------~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~---~~~~l~rA  484 (500)
                      +||++.|...          +.|+.++++++++| +++++  +|||.|+|.|.+++++||+|+||+.+|   +++||+||
T Consensus       309 ~W~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~~~RA  386 (520)
T PRK10939        309 RWFRDAFCAEEKLLAERLGIDAYSLLEEMASRVPVGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKATLFRA  386 (520)
T ss_pred             ehHHhhhchHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCC--cccccCCCCCCCCcccceeEEccccCcccCCHHHHHHH
Confidence            9999987431          24788899888887 87776  599999987666678999999999987   99999999


Q ss_pred             HHHHHHHHHHHHHHhC
Q psy9709         485 ALEAICFQTRDILELY  500 (500)
Q Consensus       485 v~Egia~~~~~~~~~~  500 (500)
                      ++|||||.+|++++.|
T Consensus       387 vlEgia~~~~~~l~~l  402 (520)
T PRK10939        387 LEENAAIVSACNLQQI  402 (520)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999864

>TIGR01312 XylB D-xylulose kinase

Probab=100.00  E-value=8.2e-55  Score=461.26  Aligned_cols=330  Identities=29%  Similarity=0.421  Sum_probs=291.7

Q ss_pred             EEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCC
Q psy9709         156 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ  235 (500)
Q Consensus       156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~~  235 (500)
                      +|||+|||++|++++|.+ |+++...+.+++...+.+||.+||++++|+.+++++++++++   .++++.+|.+||+++|
T Consensus         1 lgIDiGtt~ik~~l~d~~-g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~---~~~~~~~I~gIgvs~~   76 (481)
T TIGR01312         1 LGIDLGTSGVKALLVDEQ-GEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQ---ASEMGQDIKGIGISGQ   76 (481)
T ss_pred             CceeecCcceEEEEECCC-CCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHh---cCCCcccEEEEEEecC
Confidence            589999999999999975 999999999999888899999999999999999999999876   4566778999999999


Q ss_pred             CceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhhccc
Q psy9709         236 RETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENR  315 (500)
Q Consensus       236 ~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~  315 (500)
                      ++++++||+ +|++++|+++|.|.|..++.+++.+.++   ...+++.+|....+.++++||+||++|+||+|+++.   
T Consensus        77 ~~g~v~~d~-~g~~l~~~i~W~D~r~~~~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~---  149 (481)
T TIGR01312        77 MHGLVLLDA-NGEVLRPAILWNDTRTAQECEELEAELG---DERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIA---  149 (481)
T ss_pred             CceeEEECC-CcCCCccchhhhccchHHHHHHHHHhcC---HhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhh---
Confidence            999999998 7999999999999999998888887764   256788899999999999999999999999999987   


Q ss_pred             ccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec----CCcc--
Q psy9709         316 CLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS----NNGL--  389 (500)
Q Consensus       316 ~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~----~~G~--  389 (500)
                       +|++++|||.|+||  |+.++|+++|++|++||+++++|++++++.+|+++++||+|+++++++|++..    ..|+  
T Consensus       150 -~~~~~~~yi~~~Lt--G~~~~d~t~as~tgl~d~~~~~W~~~~l~~~gi~~~~Lp~iv~~~~~~G~v~~~~a~~~Gl~~  226 (481)
T TIGR01312       150 -KVMLPKDYLRYRLT--GEYVTEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLGLSA  226 (481)
T ss_pred             -eeeCchHHHhhhhc--CCeeeeHHHhhcccccccCCCCCCHHHHHHhCCCHHHCCCccCCCCeeeeEcHHHHHHhCCCC
Confidence             89999999999999  78999999999999999999999999999999999999999999999998431    0110  


Q ss_pred             --------------------------------eEEEEEe--------------ecCCCCceeeechhhhchhHHHHHHHH
Q psy9709         390 --------------------------------VTTVAYQ--------------FGPDATPIYALEGSIAVAGAAVKWLRD  423 (500)
Q Consensus       390 --------------------------------~~~~~~~--------------~~~~~p~~~~~~g~~~~~G~~~~w~~~  423 (500)
                                                      ...+...              ..+..|+.|.+++++.++|.+++|+++
T Consensus       227 g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~w~~~  306 (481)
T TIGR01312       227 GVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHALPGGWLPMGVTLSATSSLEWFRE  306 (481)
T ss_pred             CCeEEecchHHHHHhhCCCcccCCcEEEEecCceEEEEecCCcccCcccceeeeeeecCCceEEEeEehhhHHHHHHHHH
Confidence                                            0000000              011246778888999999999999999


Q ss_pred             HcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         424 NLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       424 ~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      .++. .+|+.+++++++++ ++++++|+|||.|+|.|++|+++||+|+|++.+|+++|++||++||+||.+|++++.|
T Consensus       307 ~~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~l~railEgia~~~~~~~~~l  383 (481)
T TIGR01312       307 LFGK-EDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQARGSFIGLTHNTTRADLTRAVLEGVTFALRDSLDIL  383 (481)
T ss_pred             HhCC-CcHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8853 46888999888877 8889999999999999999999999999999999999999999999999999999864

D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.

>TIGR02628 fuculo_kin_coli L-fuculokinase

Probab=100.00  E-value=8.4e-55  Score=457.46  Aligned_cols=322  Identities=22%  Similarity=0.321  Sum_probs=271.4

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecc--cccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS--TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~--~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      +++|||+|||++|+++||.+ |++++..+.+++  ...+.+||.|||+++||+++++++++++++     +.+.+|.+|+
T Consensus         2 ~ilgiD~GTss~K~~l~d~~-g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~-----~~~~~I~aI~   75 (465)
T TIGR02628         2 VILVLDCGATNLRAIAINRQ-GKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE-----LTEKHIRGIA   75 (465)
T ss_pred             eEEEEecCCCcEEEEEEcCC-CCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh-----cChhceEEEE
Confidence            68999999999999999974 999999888866  346789999999999999999999999853     3456799999


Q ss_pred             EcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHh
Q psy9709         232 ITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAI  311 (500)
Q Consensus       232 vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~  311 (500)
                      +++|+++++++|+ +|+|++|+|+|+|.|+.++++++.+..+.   +++++.||.++.+.++++||+|+++|+||+|+++
T Consensus        76 ~s~~~~~~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~  151 (465)
T TIGR02628        76 VTTFGVDGAPFDK-QGNQLYPIISWKCPRTAPVMDNIERLLDA---QRLYAINGIGAYSFNTLYKLVWLKEHHPQLFERM  151 (465)
T ss_pred             EeccccceEEECC-CCCCccccccccCcccHHHHHHHHHhhCH---HHHHHHhCCCccccchHHHHHHHHHhChHHHHHH
Confidence            9999999999999 79999999999999999999999987653   5688899999888899999999999999999999


Q ss_pred             hcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC----C
Q psy9709         312 KENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN----N  387 (500)
Q Consensus       312 ~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~----~  387 (500)
                      +    +|++++|||.|+||  |++++|+|+|+++++||+++++|++++++.+||+.++||+++++++++|.+...    .
T Consensus       152 ~----~~l~~~dyl~~~LT--G~~~~d~s~As~t~l~d~~~~~w~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~~a~~~  225 (465)
T TIGR02628       152 H----KFVFISSMITHRLT--GEFTTDITMAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQNSAAAML  225 (465)
T ss_pred             H----HhhCcHHHHHHHHh--CCcccchhhhhcceeeecCcCCCCHHHHHHcCCCHHHCCCcccCCccceeeCHHHHHHh
Confidence            8    89999999999999  789999999999999999999999999999999999999999999999985321    1


Q ss_pred             cce-----------------------EEEEEeecC---------------------------CCCceeeechhhhchhHH
Q psy9709         388 GLV-----------------------TTVAYQFGP---------------------------DATPIYALEGSIAVAGAA  417 (500)
Q Consensus       388 G~~-----------------------~~~~~~~~~---------------------------~~p~~~~~~g~~~~~G~~  417 (500)
                      |+.                       ..+....|+                           ..++.|...+...++| +
T Consensus       226 Gl~~g~pV~~g~~D~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~  304 (465)
T TIGR02628       226 GLPVGVPVISAGHDTQFALFGSGAEQNQPVLSSGTWEILMARSQQVDTSLLSQYAGSTCELDSQAGLYNPAMQWLASG-V  304 (465)
T ss_pred             CCCCCCCEEecCccHHHHHhccCCCCCcEEEeccchhhheeccCcCCCCccccccccccccccCCceeeehhhhhhhh-H
Confidence            110                       000000110                           1134555444445555 8


Q ss_pred             HHHHHHHcCCC----CC-HHHHHHHHHhcC-CCCCeE-EeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q psy9709         418 VKWLRDNLNLM----DN-VRETESLAEKVM-TTGDVY-FVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAIC  490 (500)
Q Consensus       418 ~~w~~~~~~~~----~~-~~~l~~~~~~~~-~~~~l~-~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia  490 (500)
                      ++|+++.+...    .+ |++|++.+++++ ++++++ |+|++.        |.+||+|+||+.+|+++||+||++||||
T Consensus       305 ~~W~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~~p~~~--------~~a~g~~~Gl~~~~~~~~l~rAvlEgia  376 (465)
T TIGR02628       305 LEWVRKLFFTAETPSDHYYQMMIEEARLIANGADGVVNFQCDLL--------SCGQGGIQGLTLNTTRGHIYRAALEGLT  376 (465)
T ss_pred             HHHHHHHhcchhhccccHHHHHHHHHHhCCCCCCcceeecccCC--------cccceeEECCCCCCCHHHHHHHHHHHHH
Confidence            99999977421    12 688888888876 888998 888764        5679999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q psy9709         491 FQTRDILELY  500 (500)
Q Consensus       491 ~~~~~~~~~~  500 (500)
                      |.+|+++|.|
T Consensus       377 ~~~r~~~e~l  386 (465)
T TIGR02628       377 AQLKRNLQML  386 (465)
T ss_pred             HHHHHHHHHH
Confidence            9999999864

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.

>PLN02669 xylulokinase

Probab=100.00  E-value=6.4e-52  Score=441.44  Aligned_cols=336  Identities=14%  Similarity=0.130  Sum_probs=284.3

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccc---cCCCCeEEEChH----------HHHHHHHHHHHHHHHHH
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTI---SPQEGWAEQDPM----------EILQAVQTTMDRAIEKL  217 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~---~~~~g~~~~d~~----------~~~~~i~~~l~~~~~~~  217 (500)
                      ..+|+||||+|||++|+++||.+ |++++..+.+++..   ++.++++|||++          .||+++..+++++.+  
T Consensus         6 ~~~~~LGiD~GT~s~Ka~l~d~~-g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~--   82 (556)
T PLN02669          6 EDSLFLGFDSSTQSLKATVLDSN-LRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAK--   82 (556)
T ss_pred             CCCeEEEEecccCCeEEEEEcCC-CCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHH--
Confidence            35689999999999999999975 99999999998743   345668999998          677999999999863  


Q ss_pred             HhCCCCCCCeeEEEEcCCCceeEEEeCCCCccc-------------------ccceeeccCCCHHHHHHHHhhCCCCccc
Q psy9709         218 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL-------------------YNAIVWSDTRADNIVDQVLAKFPDQDKD  278 (500)
Q Consensus       218 ~~~~~~~~~I~~I~vs~~~~~~v~~d~~~G~~l-------------------~~~i~w~D~r~~~~~~~~~~~~~~~~~~  278 (500)
                        .+++.++|+||++|+|+|++|+||+.+|++|                   .|+++|+|.|+.++++++.+.++.  .+
T Consensus        83 --~~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg--~~  158 (556)
T PLN02669         83 --EKFPFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGG--AA  158 (556)
T ss_pred             --cCCChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCc--HH
Confidence              3566788999999999999999988447776                   688999999999999999987653  35


Q ss_pred             hhhcccCCCCchhchHHHHHHHHhhChHHHHHhhcccccccchhHHHHHhhcCCCee-eeecccccccccccCCCCCCcH
Q psy9709         279 YLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCH-VTDVTNASRTMLMNIDSLQWDP  357 (500)
Q Consensus       279 ~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g~~-~~d~s~as~t~l~d~~~~~W~~  357 (500)
                      ++++.||.+.++.++++||+|+++|+||+|++++    +|+.++|||.|+||  |+. .+|+|+|+++++||+++++|++
T Consensus       159 ~l~~~tG~~~~~~~t~~ki~wl~~~~Pe~y~~t~----~i~~~~dyl~~~Lt--G~~~~~D~sdasg~~l~Di~~~~Ws~  232 (556)
T PLN02669        159 ELSKLTGSRAYERFTGPQIRKIYETQPEVYHDTE----RISLVSSFMASLLV--GDYASIDETDGAGMNLMDIEKRCWSK  232 (556)
T ss_pred             HHHHHHCCcccccccHHHHHHHHHhChHHHHHHH----hhccHHHHHHHhhc--CCCccccchhhhhhhhhccccCCcCH
Confidence            6888999999999999999999999999999998    89999999999999  775 6999999999999999999999


Q ss_pred             HHHhhcCCC-CCCCCCcccCCcccceeecC--------------------------Ccc------------eEEEEEee-
Q psy9709         358 LLCKYFAVP-PTILPEIRSSSEIYGKVHSN--------------------------NGL------------VTTVAYQF-  397 (500)
Q Consensus       358 ~ll~~~gl~-~~~lP~i~~~~~~~G~~~~~--------------------------~G~------------~~~~~~~~-  397 (500)
                      ++++.+++. .++||+++++++++|++...                          .|+            .+++.... 
T Consensus       233 ~ll~~~~~~l~~~Lp~~~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~~~~~~~  312 (556)
T PLN02669        233 AALEATAPGLEEKLGKLAPAHAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFGITR  312 (556)
T ss_pred             HHHHhhCccHHHHCcCCCCCCcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccceEEEecC
Confidence            999999544 37899999999999984321                          011            11111110 


Q ss_pred             -----------cCCC-CceeeechhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCC----
Q psy9709         398 -----------GPDA-TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPY----  460 (500)
Q Consensus       398 -----------~~~~-p~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~----  460 (500)
                                 .+.. |+.|..+++..+||.+++|+++.+.. ..|+.++++++..| +++|++++||+.||+.|+    
T Consensus       313 ~~~~~~~~~~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~~-~~~~~~~~~~~~~~~g~~g~l~~~~~~~e~~P~~~~~  391 (556)
T PLN02669        313 EPQPSLEGHVFPNPVDPESYMVMLCYKNGSLTREDIRNRCAD-GSWDVFNKLLEQTPPLNGGKLGFYYKEHEILPPLPVG  391 (556)
T ss_pred             CCCCCCCcceeeCccCCCCeEEEEEecchHHHHHHHHHHhcc-CcHHHHHHHHHhCCCCCCCEEEeeccCcccCCCCCCc
Confidence                       0112 67899999999999999999998853 46888899887776 888999899999999996    


Q ss_pred             CCCCCcEEEEcCCCC---------CCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         461 WRKDARGVICGMTQF---------TTKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       461 ~~~~~~g~f~Gl~~~---------~~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      +++.++|.|+|++..         |+++|++||++||++|++|.+++.|
T Consensus       392 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l  440 (556)
T PLN02669        392 FHRYILENFSGEALDGLVEEEVGEFDPPSEVRAIIEGQFLSMRAHAERF  440 (556)
T ss_pred             cchhhhccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466788999999988         6999999999999999999999875

>KOG2517|consensus

Probab=100.00  E-value=1e-50  Score=411.50  Aligned_cols=344  Identities=46%  Similarity=0.693  Sum_probs=287.9

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      .++++|||+||||+|+++||..+|+++..+..++....+++||.||||.++|+++++|++.+.+++...++....+++|+
T Consensus         5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig   84 (516)
T KOG2517|consen    5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG   84 (516)
T ss_pred             cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence            68999999999999999999778999999999999889999999999999999999999999988765556666688999


Q ss_pred             EcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHH-HHH
Q psy9709         232 ITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSV-RRA  310 (500)
Q Consensus       232 vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~-~~~  310 (500)
                      +++|+++.++|++..|+|++++|.|+|.|+..+++++....+. ....+.+.+|.+++++|.++||+||++|.|++ ..+
T Consensus        85 v~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~~~~~~ln~~~~~-~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~~~~~~~~  163 (516)
T KOG2517|consen   85 VVNQREGSVLWNKRTGEPLTNIIVWMDHRAVSEVEELNSSTPS-NLFLPRPYCGLPVSPEFSAPKLRWLLDNVPEVLKAK  163 (516)
T ss_pred             EEecCCceEEeecCCCCcccceEEeeccccHHHHHHHHhcCCc-hhcccccccCCccccccchheehHHhhhCHHHHHHH
Confidence            9999999999999899999999999999999999999988764 12224467999999999999999999999999 444


Q ss_pred             hhcccccccchhHHHHHhhcCC-Ce---eeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC
Q psy9709         311 IKENRCLFGTVDTWLVWNLTGR-TC---HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN  386 (500)
Q Consensus       311 ~~~~~~~~~~~~dyi~~~LTg~-g~---~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~  386 (500)
                      ..    ..+.+.+|+.|++++. +.   +++|.++++++++||..+..|+..+++.+|++.+++|++..+++++|.....
T Consensus       164 ~~----~~~~~~~~~twl~~~~t~~~~~~~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~llp~i~s~~e~~g~~~~~  239 (516)
T KOG2517|consen  164 EE----GGFDLGTFDTWLATGLTGRSSCHCTDVTNASRTGLFNTESGLWDLKLLDFFGLPLNLLPDIRSSSEVYGTTAAG  239 (516)
T ss_pred             Hh----cccchhhhhhheeecCCccceeccccccccccccccchhhhhhhhhhhhhhCCCcccCCccccccccccccccc
Confidence            43    4445555555555533 33   5899999999999999999999999999999999999999999999983211


Q ss_pred             -----Cc-------------ce--------------EEEEEee---cC----CCCc---------------eeeechhhh
Q psy9709         387 -----NG-------------LV--------------TTVAYQF---GP----DATP---------------IYALEGSIA  412 (500)
Q Consensus       387 -----~G-------------~~--------------~~~~~~~---~~----~~p~---------------~~~~~g~~~  412 (500)
                           .|             ++              .+-+..+   |+    ..||               .|.++|...
T Consensus       240 ~~~~~~g~~vs~~lgDq~Aa~vg~~~~~~g~~~~t~~t~~Fl~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a  319 (516)
T KOG2517|consen  240 DLGLLEGTPVSSCLGDQQASMVGQMCYKPGCAKLTYGTGCFLLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAA  319 (516)
T ss_pred             ccccccCcceeechhhHHHHHHhHhhhcCcceEEeeCCceEEeeccCCccccccCccceecccccccccHHHHHHhcccc
Confidence                 01             00              0001111   11    1122               255677777


Q ss_pred             chhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q psy9709         413 VAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQ  492 (500)
Q Consensus       413 ~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~  492 (500)
                      .+|..++|+++.+...+....+++++..+..+.+++|.|.|.|.|+|+|||++||+|.|++.+++..||.||++|+|||+
T Consensus       320 ~~~~~v~w~~d~~~i~~~~~~i~~~~~~~~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~A~leai~fq  399 (516)
T KOG2517|consen  320 FAGALVQWLRDNLGIIEELNEIEKLAAEVNLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLARAALEAIAFQ  399 (516)
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHHHHHHHHHHH
Confidence            78999999999887655566677788877788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhC
Q psy9709         493 TRDILELY  500 (500)
Q Consensus       493 ~~~~~~~~  500 (500)
                      +|.+++.|
T Consensus       400 tr~Il~am  407 (516)
T KOG2517|consen  400 TREILEAM  407 (516)
T ss_pred             HHHHHHHH
Confidence            99999975

>COG1069 AraB Ribulose kinase [Energy production and conversion]

Probab=100.00  E-value=1.1e-49  Score=400.09  Aligned_cols=334  Identities=23%  Similarity=0.315  Sum_probs=283.9

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      |..|++|||+||.|.|+++||..+|++++.+.++|+...+.....+|++.++|++++.+++.++++   +++++.+|++|
T Consensus         1 ~~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~---agv~~~~V~gI   77 (544)
T COG1069           1 MMAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAK---AGVDPADVVGI   77 (544)
T ss_pred             CccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHH---cCCChhHeeEE
Confidence            457899999999999999999977999999999999988888888999999999999999999987   68999999999


Q ss_pred             EEcCCCceeEEEeCCCCcccc---------cceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHH
Q psy9709         231 GITNQRETTVVWDLNTGEPLY---------NAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLI  301 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l~---------~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~  301 (500)
                      ||+.. +|++++|+ +|+|+.         ++|+|+|+|+.+++++++....     .++...|..++|.|..|||+||+
T Consensus        78 GvDaT-cSlvv~d~-~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~~-----~~L~~~GG~~SpEm~~PKlmwl~  150 (544)
T COG1069          78 GVDAT-CSLVVIDR-DGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATCH-----PVLDYYGGKISPEMMIPKLMWLK  150 (544)
T ss_pred             EEcce-eeeEEECC-CCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhch-----HHHHhhCCccChhhhHHHHHHHH
Confidence            99999 89999999 699985         4899999999999999998753     37788899999999999999999


Q ss_pred             hhChHHHHHhhcccccccchhHHHHHhhcCCCeeeeecccccccccccC-CCCCCcHHHHhhcCCCC-----CCCC-Ccc
Q psy9709         302 QNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNI-DSLQWDPLLCKYFAVPP-----TILP-EIR  374 (500)
Q Consensus       302 ~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~-~~~~W~~~ll~~~gl~~-----~~lP-~i~  374 (500)
                      +|.|++|+++.    +|+.+.|||.|+||  |+..-+.+++.....|.. +.+.|++++++.+|++.     ..|| +++
T Consensus       151 ~~~p~~~~~a~----~~fdl~D~l~~~lt--G~~~Rs~Ct~~~Kw~~~~~~~~~~~~~~f~~ig~~~l~~~~~~l~~~i~  224 (544)
T COG1069         151 REAPAVWERAA----HIFDLADWLTWKLT--GSIARSRCTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELDSKLPEDIV  224 (544)
T ss_pred             hhChHHHHHhh----hhhhHHHHHHHHhh--cchhhccccceeeeeeeccccCCCCHHHHHhcCchhhhcccccCCcccc
Confidence            99999999987    99999999999999  778888888988888988 55669999999999872     2354 788


Q ss_pred             cCCcccceeec---------------------CCcce---------------EEEEEee----------------cCCCC
Q psy9709         375 SSSEIYGKVHS---------------------NNGLV---------------TTVAYQF----------------GPDAT  402 (500)
Q Consensus       375 ~~~~~~G~~~~---------------------~~G~~---------------~~~~~~~----------------~~~~p  402 (500)
                      +.|+.+|.+++                     .+|..               |+.+..+                +...|
T Consensus       225 ~~g~~vg~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~P  304 (544)
T COG1069         225 PAGEPVGGLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQPGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLP  304 (544)
T ss_pred             cCCccccccCHHHHHHhCCCCCcEEeccceeccccccccccCCCCeEEEEeccceEEEEecCCceecCccccccccccCc
Confidence            99999998322                     11111               1111111                11258


Q ss_pred             ceeeechhhhchhHHHHHHHHHcCCCC-------C-----H-------HHHHHHHHhc-CCCCCeEEeccCCCCCCCCCC
Q psy9709         403 PIYALEGSIAVAGAAVKWLRDNLNLMD-------N-----V-------RETESLAEKV-MTTGDVYFVPAFGGLYAPYWR  462 (500)
Q Consensus       403 ~~~~~~g~~~~~G~~~~w~~~~~~~~~-------~-----~-------~~l~~~~~~~-~~~~~l~~~P~~~G~r~P~~~  462 (500)
                      |.|.+||++++.|..++||.+..+...       .     |       +.|.+.+.+. |+..+++++|+|+|+|+|+.|
T Consensus       305 g~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~f~GNRsP~aD  384 (544)
T COG1069         305 GLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGLHVLDWFNGNRSPLAD  384 (544)
T ss_pred             chhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCcEecccccCCcCCCCC
Confidence            899999999999999999999863211       1     1       2334444444 489999999999999999999


Q ss_pred             CCCcEEEEcCCCCCCHH---HHHHHHHHHHHHHHHHHHHhC
Q psy9709         463 KDARGVICGMTQFTTKG---HIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       463 ~~~~g~f~Gl~~~~~~~---~l~rAv~Egia~~~~~~~~~~  500 (500)
                      |++||+|+|++++|+++   .+|||.+|++||.+|.++|.|
T Consensus       385 p~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~  425 (544)
T COG1069         385 PRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETF  425 (544)
T ss_pred             ccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999   899999999999999999975

>TIGR02627 rhamnulo_kin rhamnulokinase

Probab=100.00  E-value=1.8e-49  Score=416.03  Aligned_cols=318  Identities=17%  Similarity=0.221  Sum_probs=256.2

Q ss_pred             EEEeccCCCceEEEEeCCC--CeEE-EEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         156 GVIDEGTRTVRFAIISALT--QEEV-VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       156 lgIDiGTts~k~~l~d~~~--G~vi-~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      ++||+|||++|++++|.++  |+++ .....+++...+++++.+||++.||+++.++++++.+.       ..+|.+|++
T Consensus         1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-------~~~i~~Igi   73 (454)
T TIGR02627         1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE-------GIAPDSIGI   73 (454)
T ss_pred             CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc-------CCCceEEEE
Confidence            5899999999999999752  4666 56666677778889999999999999999999988642       246999999


Q ss_pred             cCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhh
Q psy9709         233 TNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIK  312 (500)
Q Consensus       233 s~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~  312 (500)
                      |+|++++++||+ +|+|++|+|+|+|.|+.++++++.+..+.   +++++.+|.++.+.++++||+||++|+||+|++++
T Consensus        74 s~q~~~~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~  149 (454)
T TIGR02627        74 DTWGVDFVLLDQ-NGQRVGDPVSYRDSRTDGVMAQVQSELGK---EAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEKVA  149 (454)
T ss_pred             eccceeEEEEcC-CCCCccCceecCCCCCHHHHHHHHhhcCH---HHHHHHhCCCcCCccHHHHHHHHHHhChhHHHHHH
Confidence            999999999999 79999999999999999999999887653   67889999999999999999999999999999998


Q ss_pred             cccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecCC--cce
Q psy9709         313 ENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNN--GLV  390 (500)
Q Consensus       313 ~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~~--G~~  390 (500)
                          +|++++|||.|+||  |+.++|+|+|++|++||+++++|++++++.+||++++||+|+++++++|.+....  |+.
T Consensus       150 ----~~l~~~dyl~~~LT--G~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~l~~~~~~~G~~~~~gl~g~p  223 (454)
T TIGR02627       150 ----HFLLIPDYLNYRLT--GKKVWEYTNATTTQLVNINTDDWDEDLLAYLGVPAAWFGRPTHPGNVIGLWECPQGNQIP  223 (454)
T ss_pred             ----HhCCHHHHHHHhee--CCceeeeehhhhcccccCCCCCcCHHHHHHcCCCHHHcCCccCCCCeeEEeecccCCCCC
Confidence                89999999999999  7899999999999999999999999999999999999999999999999754321  110


Q ss_pred             EE---------------------EEEeecC--------------------------CCCceeeechhhhchhHHHHHHHH
Q psy9709         391 TT---------------------VAYQFGP--------------------------DATPIYALEGSIAVAGAAVKWLRD  423 (500)
Q Consensus       391 ~~---------------------~~~~~~~--------------------------~~p~~~~~~g~~~~~G~~~~w~~~  423 (500)
                      ..                     .....|+                          ..++.|.+.+.+. ++    |+++
T Consensus       224 Vv~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~----W~~~  298 (454)
T TIGR02627       224 VVAVATHDTASAVVAAPLQGENAAYLSSGTWSLMGFESQTPITNEQALAANITNEGGADGRYRVLKNIM-GL----WLLQ  298 (454)
T ss_pred             EEEECCchHHHHHhcCCCCCCCcEEEEEcHHHHhcccCCCCCCCHHHHHhccccccccccEEEeecchh-hh----HHHH
Confidence            00                     0001110                          0012233332222 23    6665


Q ss_pred             HcCC---CCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCC-CcE------EEEcCCCCCCHHHHHHHHHHHHHHHH
Q psy9709         424 NLNL---MDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKD-ARG------VICGMTQFTTKGHIIRAALEAICFQT  493 (500)
Q Consensus       424 ~~~~---~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~-~~g------~f~Gl~~~~~~~~l~rAv~Egia~~~  493 (500)
                      .+..   ...|+.+.+.+...|.     +.|++.|++.|++||. +++      .|+||+..|+++||+||++||+||.+
T Consensus       299 ~~~~~~~~~~~~~l~~~a~~~p~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l~RAv~Egva~~~  373 (454)
T TIGR02627       299 RVCRERDINDLPALIEQAQALPA-----FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPESDAELARCIFDSLALLY  373 (454)
T ss_pred             HHHhhhccccHHHHHHHhcCCCC-----CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            5431   2346666666654442     3366789999999995 444      45999999999999999999999999


Q ss_pred             HHHHHhC
Q psy9709         494 RDILELY  500 (500)
Q Consensus       494 ~~~~~~~  500 (500)
                      |+++|.|
T Consensus       374 r~~~e~l  380 (454)
T TIGR02627       374 RQVLLEL  380 (454)
T ss_pred             HHHHHHH
Confidence            9999865

This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.

>PRK10640 rhaB rhamnulokinase; Provisional

Probab=100.00  E-value=1e-44  Score=380.50  Aligned_cols=293  Identities=17%  Similarity=0.238  Sum_probs=239.2

Q ss_pred             EeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCCceeEEEeCCCCcccccceeeccC
Q psy9709         180 SHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDT  259 (500)
Q Consensus       180 ~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~~~~~~v~~d~~~G~~l~~~i~w~D~  259 (500)
                      ..++++. ..+.+++.++|++.||+++.++++++...       ..+|.+|++|+|++++++||+ +|+||+|+|+|+|.
T Consensus        17 ~~r~~~~-~~~~~~~~~~d~~~~~~~i~~~l~~~~~~-------~~~I~~Igis~q~~~~v~lD~-~G~pL~pai~w~D~   87 (471)
T PRK10640         17 IHRFNNG-LHSQDGFDTWDVDSLESAIRLGLNKVCEE-------GIRIDSIGIDTWGVDYVLLDK-QGQRVGLPVSYRDS   87 (471)
T ss_pred             EEecCCC-CeeeCCeeEECHHHHHHHHHHHHHHHhhc-------CCCccEEEEcCCcccEEEECC-CCCCcCCceeccCC
Confidence            3444444 34678899999999999999998887542       357999999999999999999 79999999999999


Q ss_pred             CCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhhcccccccchhHHHHHhhcCCCeeeeec
Q psy9709         260 RADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDV  339 (500)
Q Consensus       260 r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~  339 (500)
                      |+.++++++.+.++.   +++++.||.++.+.++++||+|+++|+|++|++++    +|++++|||.|+||  |+.++|+
T Consensus        88 Ra~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~----~~l~~~dyl~~~LT--G~~~~d~  158 (471)
T PRK10640         88 RTDGVMAQAQQQLGK---RDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVA----HALLIPDYFSYRLT--GKMNWEY  158 (471)
T ss_pred             CCHHHHHHHHHhcCH---HHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhh----HeecHHHHHHHHHh--CCcceee
Confidence            999999999987653   67889999999999999999999999999999987    89999999999999  7899999


Q ss_pred             ccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecCCc--ceEE---------------------EEEe
Q psy9709         340 TNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNG--LVTT---------------------VAYQ  396 (500)
Q Consensus       340 s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~~G--~~~~---------------------~~~~  396 (500)
                      |+|++|++||+++++|++++++.+||+.++||+++++++++|.+....|  +.-.                     ....
T Consensus       159 s~as~t~l~d~~~~~W~~ell~~~Gi~~~~LP~lv~~~~~~G~v~~~~g~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s  238 (471)
T PRK10640        159 TNATTTQLVNINSDDWDESLLAWSGAPKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTASAVIASPLNDSDAAYLS  238 (471)
T ss_pred             cHhhhccccCCCcCCcCHHHHHHcCCCHHHcCCCcCCCccceeeecccCCCCCEEEeCCCcHHHHhhccCCCCCCeEEEE
Confidence            9999999999999999999999999999999999999999998543222  1000                     0001


Q ss_pred             ecC--------------------------CCCceeeechhhhchhHHHHHHHHHcCC---CCCHHHHHHHHHhcCCCCCe
Q psy9709         397 FGP--------------------------DATPIYALEGSIAVAGAAVKWLRDNLNL---MDNVRETESLAEKVMTTGDV  447 (500)
Q Consensus       397 ~~~--------------------------~~p~~~~~~g~~~~~G~~~~w~~~~~~~---~~~~~~l~~~~~~~~~~~~l  447 (500)
                      .|+                          ..++.|.+...+  .|   +|+++.+..   ...|+++.++++++|+++++
T Consensus       239 ~GT~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~--~g---~W~~~~~~~~~~~~~~~~l~~~a~~~~g~~gl  313 (471)
T PRK10640        239 SGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNI--MG---LWLLQRVLQERQITDLPALIAATAALPACRFL  313 (471)
T ss_pred             eccHhhhheecCCCcCCHHHHHhccCccCCCCceEEEecch--hH---HHHHHHHHHHhccCCHHHHHHHHHhCCCCCce
Confidence            111                          012233333222  13   899997642   23577887788888888888


Q ss_pred             EEeccCCCCCCCCCCC-CCcEEEEcCCCCC------CHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         448 YFVPAFGGLYAPYWRK-DARGVICGMTQFT------TKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       448 ~~~P~~~G~r~P~~~~-~~~g~f~Gl~~~~------~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      + +|  .|+|.  +|| ++||+|+|++..|      +++||+||++||+||.+|+++|.|
T Consensus       314 i-~p--~ger~--~~~~~arg~~~gl~~~~G~~~~~~~~~l~RAvlEgva~~~r~~l~~l  368 (471)
T PRK10640        314 I-NP--NDDRF--INPPSMCSEIQAACRETAQPVPESDAELARCIFDSLALLYADVLHEL  368 (471)
T ss_pred             e-CC--Ccccc--cCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6 58  69994  675 8999997777766      999999999999999999999865

>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=100.00  E-value=6.9e-44  Score=344.40  Aligned_cols=218  Identities=33%  Similarity=0.516  Sum_probs=198.3

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      |+||||+|||++|+++||. +|+++...+++++...+.+|+.+||+++||+.+++++++++++   .+..+.+|++|+++
T Consensus         1 y~lgiDiGTts~K~~l~d~-~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I~aI~is   76 (245)
T PF00370_consen    1 YYLGIDIGTTSVKAVLFDE-DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQ---AGIDPEQIKAIGIS   76 (245)
T ss_dssp             EEEEEEECSSEEEEEEEET-TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHH---CTSCGGGEEEEEEE
T ss_pred             CEEEEEEcccceEEEEEeC-CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhh---cCcccceeEEEEec
Confidence            6899999999999999996 5999999999999888889999999999999999999999986   35677899999999


Q ss_pred             CCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhhc
Q psy9709         234 NQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKE  313 (500)
Q Consensus       234 ~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~  313 (500)
                      +++++++++|+ +|+|++|+++|+|.|+.++++++.+...   .+++++.+|.++++.++++||+||++|+||+|++++ 
T Consensus        77 ~~~~~~v~~D~-~~~pl~~~i~w~D~R~~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~-  151 (245)
T PF00370_consen   77 GQGHGLVLLDK-DGKPLRPAILWMDTRAAEEAEELNEEGS---PEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAA-  151 (245)
T ss_dssp             E-SSEEEEEET-TSSBSSCEE-TT-CTTHHHHHHHHHHTH---HHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHH-
T ss_pred             cccCCcceecc-ccccccccccccccchhhHHHHHHhhcC---cceeeeeccccccccchHHHHHHHHHhCchhhhhhh-
Confidence            99999999999 6999999999999999999999988654   378899999999999999999999999999999998 


Q ss_pred             ccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec
Q psy9709         314 NRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS  385 (500)
Q Consensus       314 ~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~  385 (500)
                         +|++++|||.|+||  |+.++|+|+|+++++||+++++|++++++.+|++.++||+|+++|+++|++..
T Consensus       152 ---~~~~~~dyl~~~Lt--G~~~~d~s~as~tgl~d~~~~~w~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~  218 (245)
T PF00370_consen  152 ---KFLTLSDYLAYKLT--GRAATDYSNASRTGLYDIRTGQWDEELLEALGIPEELLPEIVPPGEIIGTLTP  218 (245)
T ss_dssp             ---EEEEHHHHHHHHHH--SC-EEEHHHHCTSSSEETTTTEE-HHHHHHTTSGGGGSCEEE-TTSEEEEEEH
T ss_pred             ---hcccHHHHHHhhcc--ccccccccchhccccccccccccCHHHHHhhCCChhhCCcEecCCCeeEEECH
Confidence               99999999999999  78999999999999999999999999999999999999999999999999765

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....

>COG0554 GlpK Glycerol kinase [Energy production and conversion]

Probab=99.94  E-value=8.8e-27  Score=231.86  Aligned_cols=147  Identities=35%  Similarity=0.531  Sum_probs=130.8

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .||++||.||||+|++|||. +|++++..+.+++.++|++||+||||+++|+++..++++++++   +++.+.+|++|||
T Consensus         5 ~yIlAiDqGTTssRaivfd~-~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~---~~i~~~~iaaIGI   80 (499)
T COG0554           5 KYILAIDQGTTSSRAIVFDE-DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAK---AGIKPGEIAAIGI   80 (499)
T ss_pred             cEEEEEecCCcceeEEEECC-CCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHH---cCCCccceEEEEe
Confidence            68889999999999999998 9999999999999999999999999999999999999999988   8999999999999


Q ss_pred             cCCcceeEEeeCCCCCccccccccCCccc----------------cCCC-----CCCCCCCC------Cc-----ccccc
Q psy9709         104 TNQRETTVVWDLNTGEPLYNAIDKMPSLV----------------YNTP-----PEPSSNTN------NN-----SIQTQ  151 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~p~i~w~d~~~----------------~~~t-----~~~~~~~~------n~-----~~~~~  151 (500)
                      +.||+|+|+||+++|+|++|+|.|+|+|.                +++|     ||| |++|      |+     +....
T Consensus        81 TNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYF-SatKi~WiLdnv~g~r~~ae~G  159 (499)
T COG0554          81 TNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYF-SATKIKWILDNVPGARERAEKG  159 (499)
T ss_pred             eccceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCc-cchhhhHHHhhChhhhhHhhcC
Confidence            99999999999999999999999997775                3455     999 9988      55     23345


Q ss_pred             CCEEEEEec---------------cCCCceEEEEeCCCC
Q psy9709         152 VPLIGVIDE---------------GTRTVRFAIISALTQ  175 (500)
Q Consensus       152 ~~~~lgIDi---------------GTts~k~~l~d~~~G  175 (500)
                      +-.+..||.               -|+..|++|||..++
T Consensus       160 el~fGTiDtWLiw~LTgg~~h~TD~sNASRT~L~ni~~l  198 (499)
T COG0554         160 ELLFGTIDTWLIWKLTGGKVHVTDYSNASRTMLFNIHSL  198 (499)
T ss_pred             CeEEecchhhheeeccCCceeccccchhHHHhccccccc
Confidence            567888887               366778888887654

>KOG2531|consensus

Probab=99.90  E-value=4.6e-22  Score=195.18  Aligned_cols=337  Identities=15%  Similarity=0.157  Sum_probs=244.4

Q ss_pred             ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccC----CCC-------eEEEChH-HHHHHHHHHHHHHHHHH
Q psy9709         150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISP----QEG-------WAEQDPM-EILQAVQTTMDRAIEKL  217 (500)
Q Consensus       150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~----~~g-------~~~~d~~-~~~~~i~~~l~~~~~~~  217 (500)
                      +....+||+|.+|+.+|++++|.+ ++|+..+...+....|    .+|       .....|- .|.+++--.    ++++
T Consensus         6 ~~~~~fLG~DlSTQqlKaviids~-LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDll----l~kl   80 (545)
T KOG2531|consen    6 QPDRSFLGFDLSTQQLKAVIIDSN-LNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLL----LDKL   80 (545)
T ss_pred             CCCceeeeeecccceeEEEEEcCC-ccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHH----HHHH
Confidence            334569999999999999999985 9999877666543322    122       3344555 555555444    4444


Q ss_pred             HhCCCCCCCeeEEEEcCCCceeEEEeCCCCcc-cc-------------------cceeeccCCCHHHHHHHHhhCCCCcc
Q psy9709         218 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEP-LY-------------------NAIVWSDTRADNIVDQVLAKFPDQDK  277 (500)
Q Consensus       218 ~~~~~~~~~I~~I~vs~~~~~~v~~d~~~G~~-l~-------------------~~i~w~D~r~~~~~~~~~~~~~~~~~  277 (500)
                      ..++.+...|.||+=++|.|+.|.|.+ .++- |.                   ..-.|+|.....+++++...+++  .
T Consensus        81 ~~~~~d~~kV~aiSGagQQHGsVyWs~-ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG--~  157 (545)
T KOG2531|consen   81 REAGFDLSKVMAISGAGQQHGSVYWSK-GAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGG--A  157 (545)
T ss_pred             HHcCCCHHHhhhhcccccccceeeehh-hhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhcc--H
Confidence            456788888999999999999999987 3432 11                   23469999999999999998875  6


Q ss_pred             chhhcccCCCCchhchHHHHHHHHhhChHHHHHhhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcH
Q psy9709         278 DYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDP  357 (500)
Q Consensus       278 ~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~  357 (500)
                      .++.+.||...+..|+.++++-+.+.+||+|+++.    ++-.+..|++-.|-| +...+|+|+++++.|+|++++.|+.
T Consensus       158 ~~la~LTGSRAy~RFTGpQIrKi~~~~pe~Ye~Te----rISLVSsFlaSlllG-~~a~id~sDgsGMNL~dIr~k~ws~  232 (545)
T KOG2531|consen  158 QELAKLTGSRAYERFTGPQIRKIYQQEPEAYEKTE----RISLVSSFLASLLLG-SYAPIDESDGSGMNLLDIRKKKWSK  232 (545)
T ss_pred             HHHHHhhcchhhhhcccHHHHHHHHhChHhhhccc----eeehHHHHHHHHHhc-cccceecccccCchHHHHhhhhhhH
Confidence            78889999999999999999999999999999987    888889999999997 4778999999999999999999999


Q ss_pred             HHHhhcCCC-CCCCCCcccCCcccceeec----------------C---------------------CcceEEEEEeec-
Q psy9709         358 LLCKYFAVP-PTILPEIRSSSEIYGKVHS----------------N---------------------NGLVTTVAYQFG-  398 (500)
Q Consensus       358 ~ll~~~gl~-~~~lP~i~~~~~~~G~~~~----------------~---------------------~G~~~~~~~~~~-  398 (500)
                      ++|+++.-+ +++|-..+++..++|++..                .                     .|.++|+..... 
T Consensus       233 ~~L~~~apdL~~KL~~pv~~~~~~G~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL~l~~~dl~iSLGTSdTv~m~t~~  312 (545)
T KOG2531|consen  233 ALLDACAPDLEEKLGKPVPPMSIAGTISKYFVKRYGFPPDCKVVPSTGDNPSSLAGLPLRPGDLLISLGTSDTVFMVTKE  312 (545)
T ss_pred             HHHhhhChhHHHHhCCCCCccccccchhhhhHhhcCCCCCCEEEecCCCChHHhhCccccCCceEEEecCcceEEEEcCC
Confidence            999988644 3456666778788888322                1                     122233322111 


Q ss_pred             -------C-----CCCceeeechhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCC-CCC
Q psy9709         399 -------P-----DATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYW-RKD  464 (500)
Q Consensus       399 -------~-----~~p~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~-~~~  464 (500)
                             |     ..|..|+..-|.-+|+.+-+-+|+... ..+++..++.....| |.++.+-+-|=.+|-.|.. -..
T Consensus       313 ~~p~~egHvf~hP~~~~~YM~mlCfkNgSL~RE~ir~~~~-~~sWd~Fne~L~~t~~gn~g~~g~~f~~~EIvP~~~~G~  391 (545)
T KOG2531|consen  313 YHPSPEGHVFCHPTDPNHYMGMLCFKNGSLTRERIRNESA-NGSWDKFNEILDSTPSGNNGNLGVYFPEREIVPSVPKGT  391 (545)
T ss_pred             CCCCCCcceeccCCCccceEEEEEecCChHHHHHHhhccc-CCCHHHHHHHhccCcCCCCCceeEecccccccCCCCccc
Confidence                   1     124568877788899999898887653 357899999877776 6666533222245656511 111


Q ss_pred             CcEEEE---------cCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         465 ARGVIC---------GMTQFTTKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       465 ~~g~f~---------Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      .|=.+-         ++-...++++-+||++||-++..|...+.|
T Consensus       392 ~R~~~~~~~~~~~~~~v~kf~~p~~e~rAlvEgQ~L~~r~~~~~l  436 (545)
T KOG2531|consen  392 LRFIFENKELSAERIEVAKFSDPEIEARALVEGQFLSKRARAEPL  436 (545)
T ss_pred             eEEEecCCccchhhcccccCCCchHHHHHHHHHhHhHhhhhhccc
Confidence            111111         333445688999999999999988776643

>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=99.84  E-value=7.2e-21  Score=183.77  Aligned_cols=104  Identities=31%  Similarity=0.440  Sum_probs=94.8

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      |++|||+|||++|++|||. +|++++..+.+++...+.+|+.||||++||+++++++++++++   .+...++|.+||||
T Consensus         1 y~lgiDiGTts~K~~l~d~-~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I~aI~is   76 (245)
T PF00370_consen    1 YYLGIDIGTTSVKAVLFDE-DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQ---AGIDPEQIKAIGIS   76 (245)
T ss_dssp             EEEEEEECSSEEEEEEEET-TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHH---CTSCGGGEEEEEEE
T ss_pred             CEEEEEEcccceEEEEEeC-CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhh---cCcccceeEEEEec
Confidence            4677999999999999997 9999999999999999999999999999999999999999998   77788999999999


Q ss_pred             CCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         105 NQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      +|++++|++|+ +|+|++|+|+|.|.|..
T Consensus        77 ~~~~~~v~~D~-~~~pl~~~i~w~D~R~~  104 (245)
T PF00370_consen   77 GQGHGLVLLDK-DGKPLRPAILWMDTRAA  104 (245)
T ss_dssp             E-SSEEEEEET-TSSBSSCEE-TT-CTTH
T ss_pred             cccCCcceecc-ccccccccccccccchh
Confidence            99999999999 69999999999999973

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....

>PRK00047 glpK glycerol kinase; Provisional

Probab=99.83  E-value=1.7e-20  Score=199.42  Aligned_cols=111  Identities=39%  Similarity=0.601  Sum_probs=101.0

Q ss_pred             ccccCcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy9709          19 IQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI   98 (500)
Q Consensus        19 ~~m~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i   98 (500)
                      |||+ .+++|||+|||++|++|||. +|++++..+.+|+...+.+||+||||++||+++++++++++++   .+.++++|
T Consensus         1 ~~m~-~~~lgiD~GTts~Ka~l~d~-~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I   75 (498)
T PRK00047          1 MMMK-KYILALDQGTTSSRAIIFDH-DGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAK---AGISPDQI   75 (498)
T ss_pred             CCcc-CEEEEEecCCCceEEEEECC-CCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCChhHe
Confidence            3444 57788999999999999998 9999999999999888999999999999999999999999987   77778899


Q ss_pred             eEEEEcCCcceeEEeeCCCCCccccccccCCccccC
Q psy9709          99 VTLGITNQRETTVVWDLNTGEPLYNAIDKMPSLVYN  134 (500)
Q Consensus        99 ~~Igis~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~  134 (500)
                      .+||||+|++++++||+++|+|++|+|+|+|.|..+
T Consensus        76 ~~Igis~~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~  111 (498)
T PRK00047         76 AAIGITNQRETTVVWDKETGRPIYNAIVWQDRRTAD  111 (498)
T ss_pred             eEEEEecCcceEEEEECCCCcCCcccceecccchHH
Confidence            999999999999999963599999999999988743

>PLN02295 glycerol kinase

Probab=99.83  E-value=2.3e-20  Score=198.77  Aligned_cols=104  Identities=47%  Similarity=0.779  Sum_probs=96.2

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCC----eeE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD----IVT  100 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~----i~~  100 (500)
                      +++|||+|||++|++|||. +|++++..+.+|+..+|++||+||||++||+++++++++++++   .+.++++    |.+
T Consensus         1 ~vlgID~GTts~Ka~l~d~-~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~~~i~~~i~a   76 (512)
T PLN02295          1 FVGAIDQGTTSTRFIIYDR-DARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEK---AAAKGHNVDSGLKA   76 (512)
T ss_pred             CEEEEecCCCceEEEEECC-CCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCCccccccceEE
Confidence            4677999999999999998 9999999999999999999999999999999999999999988   6666666    799


Q ss_pred             EEEcCCcceeEEe-eCCCCCccccccccCCcccc
Q psy9709         101 LGITNQRETTVVW-DLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       101 Igis~~~~~~v~~-d~~~g~pl~p~i~w~d~~~~  133 (500)
                      ||+|+|++|+++| |+ +|+||+|+|+|+|.|..
T Consensus        77 Ig~s~q~~~~v~~dd~-~G~pl~~~i~w~D~Ra~  109 (512)
T PLN02295         77 IGITNQRETTVAWSKS-TGRPLYNAIVWMDSRTS  109 (512)
T ss_pred             EEEecCcceEEEEECC-CCCCcccceeccccchH
Confidence            9999999999999 57 79999999999998874

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=99.82  E-value=2.7e-20  Score=197.39  Aligned_cols=105  Identities=31%  Similarity=0.457  Sum_probs=98.9

Q ss_pred             cEEEEEecCCCcceEEEEeCCC-CcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALT-QEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~-g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      .+++|||+|||++|+++||. + |++++..+.+++..++.+||+||||++||+++++++++++++   ..+..++|.|||
T Consensus         4 ~~~lgIDiGTt~~Kavl~d~-~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~---~~~~~~~I~aI~   79 (502)
T COG1070           4 KYVLGIDIGTTSVKAVLFDE-DGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE---SKIDPDAIAAIG   79 (502)
T ss_pred             cEEEEEEcCCCcEEEEEEeC-CCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHh---cccChhhceEEE
Confidence            56777999999999999998 7 899999999999998999999999999999999999999988   667889999999


Q ss_pred             EcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      ||+|+|+++++|+ +|+||+|+|+|+|.|..
T Consensus        80 is~~~~g~vllD~-~g~~L~~~i~w~D~R~~  109 (502)
T COG1070          80 ISGQGHGLVLLDA-NGEPLRPAILWNDTRAA  109 (502)
T ss_pred             EeccccceEEECC-CCCCccccceecchhhH
Confidence            9999999999999 69999999999998884

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=99.81  E-value=7.1e-20  Score=194.77  Aligned_cols=106  Identities=45%  Similarity=0.717  Sum_probs=96.9

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCC--CeeEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD--DIVTLG  102 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~--~i~~Ig  102 (500)
                      +++|||+|||++|++|||. +|++++..+.+++...+.+||.||||++||+++++++++++++   .+..+.  +|++||
T Consensus         3 ~~lgiDiGTts~Ka~l~d~-~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~---~~~~~~~~~I~aIg   78 (504)
T PTZ00294          3 YIGSIDQGTTSTRFIIFDE-KGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKK---LREKGPSFKIKAIG   78 (504)
T ss_pred             EEEEEecCCCceEEEEECC-CCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCCCccCceEEEE
Confidence            6788999999999999998 9999999999999888999999999999999999999999987   555555  799999


Q ss_pred             EcCCcceeEEeeCCCCCccccccccCCccccC
Q psy9709         103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVYN  134 (500)
Q Consensus       103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~  134 (500)
                      ||+|++++|+||+++|+||+|+|+|+|.|..+
T Consensus        79 is~q~~~~v~~D~~~g~pl~~~i~w~D~R~~~  110 (504)
T PTZ00294         79 ITNQRETVVAWDKVTGKPLYNAIVWLDTRTYD  110 (504)
T ss_pred             eecCcceEEEEECCCCCCcccceeecchhhHH
Confidence            99999999999874599999999999988753

>PRK10331 L-fuculokinase; Provisional

Probab=99.80  E-value=1.7e-19  Score=190.28  Aligned_cols=103  Identities=18%  Similarity=0.155  Sum_probs=93.4

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeee--eecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS--TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~--~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      +++|||+|||++|+++||. +|++++..+.+++  ...+.+||+||||++||+++++++++++++   .  ...+|.+||
T Consensus         3 ~~lgID~GTt~~Ka~l~d~-~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~---~--~~~~I~~I~   76 (470)
T PRK10331          3 VILVLDCGATNVRAIAVDR-QGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSE---L--TECHIRGIT   76 (470)
T ss_pred             eEEEEecCCCceEEEEEcC-CCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHh---C--CccceEEEE
Confidence            6778999999999999998 9999999998876  456789999999999999999999999876   3  345799999


Q ss_pred             EcCCcceeEEeeCCCCCccccccccCCccccC
Q psy9709         103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVYN  134 (500)
Q Consensus       103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~  134 (500)
                      ||+|++++++||+ +|+||+|+|+|+|.|..+
T Consensus        77 is~~~~~~v~~D~-~G~pl~p~i~w~D~Ra~~  107 (470)
T PRK10331         77 VTTFGVDGALVDK-QGNLLYPIISWKCPRTAA  107 (470)
T ss_pred             EeccccceEEECC-CcCCccCceeecCCCcHH
Confidence            9999999999999 799999999999988853

>TIGR01234 L-ribulokinase L-ribulokinase

Probab=99.79  E-value=1.9e-19  Score=192.80  Aligned_cols=105  Identities=20%  Similarity=0.210  Sum_probs=94.7

Q ss_pred             EEEEEecCCCcceEEEEe-CCCCcEEEEEEeeeee-----ecCC------CCccccCHHHHHHHHHHHHHHHHHHHHhCC
Q psy9709          25 LIGVIDEGTRTVRFAIIS-ALTQEEVVSHSMDIST-----ISPQ------EGWAEQDPMEILQAVQTTMDRAIEKLSAHG   92 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d-~~~g~~l~~~~~~~~~-----~~~~------~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~   92 (500)
                      +++|||+|||++|++||| . +|++++..+.+|+.     .+|.      +||+||||++||+++++++++++++   .+
T Consensus         2 ~~lgiD~GTss~Ka~l~d~~-~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~---~~   77 (536)
T TIGR01234         2 YAIGVDFGTLSGRALAVDVA-TGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAE---LG   77 (536)
T ss_pred             eEEEEecCCCceEEEEEECC-CCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHH---cC
Confidence            577899999999999999 8 89999999999873     4564      8999999999999999999999988   77


Q ss_pred             CCCCCeeEEEEcCCcceeEEeeCCCCCcccc-----------ccccCCccccC
Q psy9709          93 LSRDDIVTLGITNQRETTVVWDLNTGEPLYN-----------AIDKMPSLVYN  134 (500)
Q Consensus        93 ~~~~~i~~Igis~~~~~~v~~d~~~g~pl~p-----------~i~w~d~~~~~  134 (500)
                      +++++|++||+|+|++|+|+||+ +|+||+|           +|+|+|.|..+
T Consensus        78 ~~~~~I~aI~~s~q~~s~v~~D~-~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~  129 (536)
T TIGR01234        78 VDPADVVGIGVDFTACTPAPIDS-DGNPLCLLPEFAENPHAYFKLWKHHAAQE  129 (536)
T ss_pred             CCHHHEEEEEEecCcceeEEECC-CCCEeecccccccCcccceeeeccCCcHH
Confidence            77788999999999999999999 6999993           99999987643

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.

>PRK15027 xylulokinase; Provisional

Probab=99.79  E-value=3.1e-19  Score=189.07  Aligned_cols=103  Identities=27%  Similarity=0.316  Sum_probs=95.1

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++|||+|||++|++|||. +|++++..+.+|+...+.+||.||||++||+++++++++++++   .  ..++|.+||||+
T Consensus         2 ~lgID~GTts~Ka~l~d~-~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~---~--~~~~I~aI~is~   75 (484)
T PRK15027          2 YIGIDLGTSGVKVILLNE-QGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQ---H--SLQDVKALGIAG   75 (484)
T ss_pred             EEEEEecccceEEEEEcC-CCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHh---C--CccceeEEEEec
Confidence            567999999999999998 9999999999999888999999999999999999999999976   3  356899999999


Q ss_pred             CcceeEEeeCCCCCccccccccCCccccCC
Q psy9709         106 QRETTVVWDLNTGEPLYNAIDKMPSLVYNT  135 (500)
Q Consensus       106 ~~~~~v~~d~~~g~pl~p~i~w~d~~~~~~  135 (500)
                      |+|++++||+ +|+|++|+|+|+|.|..+.
T Consensus        76 q~~~~v~~D~-~g~~l~p~i~w~D~R~~~~  104 (484)
T PRK15027         76 QMHGATLLDA-QQRVLRPAILWNDGRCAQE  104 (484)
T ss_pred             CCCceEEECC-CcCCccccccccCccHHHH
Confidence            9999999999 6999999999999888644

>TIGR02628 fuculo_kin_coli L-fuculokinase

Probab=99.79  E-value=3.8e-19  Score=187.33  Aligned_cols=102  Identities=20%  Similarity=0.176  Sum_probs=92.6

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeee--eecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS--TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~--~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      +++|||+|||++|++|||. +|++++..+.+++  ...+.+||+||||++||+++++++++++++     +.+++|.+||
T Consensus         2 ~ilgiD~GTss~K~~l~d~-~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~-----~~~~~I~aI~   75 (465)
T TIGR02628         2 VILVLDCGATNLRAIAINR-QGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE-----LTEKHIRGIA   75 (465)
T ss_pred             eEEEEecCCCcEEEEEEcC-CCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh-----cChhceEEEE
Confidence            5788999999999999998 9999999998865  456889999999999999999999999853     3456799999


Q ss_pred             EcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      +++|+++++++|+ +|+|++|+|+|+|.|..
T Consensus        76 ~s~~~~~~v~~D~-~G~~l~p~i~w~D~R~~  105 (465)
T TIGR02628        76 VTTFGVDGAPFDK-QGNQLYPIISWKCPRTA  105 (465)
T ss_pred             EeccccceEEECC-CCCCccccccccCcccH
Confidence            9999999999999 69999999999998875

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.

>PRK04123 ribulokinase; Provisional

Probab=99.79  E-value=4.9e-19  Score=190.34  Aligned_cols=105  Identities=19%  Similarity=0.267  Sum_probs=95.9

Q ss_pred             cEEEEEecCCCcceEEEEe-CCCCcEEEEEEeeeeee------cCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy9709          24 PLIGVIDEGTRTVRFAIIS-ALTQEEVVSHSMDISTI------SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD   96 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d-~~~g~~l~~~~~~~~~~------~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~   96 (500)
                      .+++|||+|||++|++||| . +|+++++.+.+|+..      +|.+||+||||++||+++++++++++++   .++.+.
T Consensus         3 ~~~lgiD~GTts~Ka~l~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~~   78 (548)
T PRK04123          3 AYVIGLDFGTDSVRALLVDCA-TGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKE---AGVDPA   78 (548)
T ss_pred             cEEEEEecCCCceEEEEEECC-CCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHH---cCCChh
Confidence            3677899999999999999 5 899999999998743      5899999999999999999999999987   777778


Q ss_pred             CeeEEEEcCCcceeEEeeCCCCCccc-----------cccccCCcccc
Q psy9709          97 DIVTLGITNQRETTVVWDLNTGEPLY-----------NAIDKMPSLVY  133 (500)
Q Consensus        97 ~i~~Igis~~~~~~v~~d~~~g~pl~-----------p~i~w~d~~~~  133 (500)
                      +|.+||||+|++++++||+ +|+||+           |+|+|+|.|..
T Consensus        79 ~I~aIgis~~~~~~v~~D~-~G~pl~~~~~~~~~p~~~~i~W~D~Ra~  125 (548)
T PRK04123         79 AVVGIGVDFTGSTPAPVDA-DGTPLALLPEFAENPHAMVKLWKDHTAQ  125 (548)
T ss_pred             hEEEEEEecccceeEEECC-CCCEeecccccccCcccceeEeccCCHH
Confidence            8999999999999999999 699998           99999998763

>TIGR01311 glycerol_kin glycerol kinase

Probab=99.78  E-value=1e-18  Score=185.46  Aligned_cols=106  Identities=43%  Similarity=0.688  Sum_probs=98.5

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++|||+|||++|++|||. +|++++..+.+++..++.+||+||||++||+++++++++++++   .++.+++|.+|||+
T Consensus         2 ~~lgiDiGtt~iKa~l~d~-~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~i~aIgis   77 (493)
T TIGR01311         2 YILAIDQGTTSSRAIVFDK-DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAK---AGIKPDDIAAIGIT   77 (493)
T ss_pred             eEEEEecCCCceEEEEECC-CCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCChhheeEEEEe
Confidence            5778999999999999998 9999999999999888999999999999999999999999988   77777899999999


Q ss_pred             CCcceeEEeeCCCCCccccccccCCccccC
Q psy9709         105 NQRETTVVWDLNTGEPLYNAIDKMPSLVYN  134 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~  134 (500)
                      +|++++|+||+++|+|++|+|+|.|.|..+
T Consensus        78 ~~~~~~v~~D~~~G~~l~p~i~w~D~R~~~  107 (493)
T TIGR01311        78 NQRETTVVWDKATGKPLYNAIVWQDRRTAS  107 (493)
T ss_pred             cCcceEEEEECCCCcCcccceeecccchHH
Confidence            999999999973599999999999988754

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase

Probab=99.77  E-value=9.2e-19  Score=187.51  Aligned_cols=104  Identities=24%  Similarity=0.310  Sum_probs=96.7

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++|||+|||++|++|||. +|+++++.+.+++..++.+||+||||++||+++++++++++++   .+++.++|++|||++
T Consensus         2 ~lgID~GTts~Ka~l~d~-~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~---~~~~~~~I~~Igis~   77 (541)
T TIGR01315         2 YIGVDVGTGSARACIIDS-TGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAE---SKVDPNSVKGIGFDA   77 (541)
T ss_pred             EEEEEecCcCEEEEEEcC-CCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHH---cCCChhheEEEEecc
Confidence            567999999999999998 9999999999999889999999999999999999999999987   777778899999999


Q ss_pred             CcceeEEeeCCCCCcc---------ccccccCCccccCC
Q psy9709         106 QRETTVVWDLNTGEPL---------YNAIDKMPSLVYNT  135 (500)
Q Consensus       106 ~~~~~v~~d~~~g~pl---------~p~i~w~d~~~~~~  135 (500)
                      | +++|+||+ +|+||         +|+|+|+|.|..+.
T Consensus        78 ~-~s~v~~D~-~g~pl~~~~~~~~~~~~i~W~D~Ra~~~  114 (541)
T TIGR01315        78 T-CSLVVLTH-DGEPLPVSKNGGADQNIILWMDHRALAE  114 (541)
T ss_pred             c-ccceEEcC-CCCeeecCCCCCcccceeEeecCcHHHH
Confidence            9 99999999 69999         89999999888533

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=99.77  E-value=1.7e-18  Score=184.39  Aligned_cols=103  Identities=21%  Similarity=0.292  Sum_probs=95.2

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++|||+|||++|+++||. +|+++++.+.+++...+.+||.||||++||+++++++++++++   .+.+ ++|.+|||+
T Consensus         1 ~~lgiDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~-~~I~~Igis   75 (505)
T TIGR01314         1 YMIGVDIGTTSTKAVLFEE-NGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSIN---LEDE-DEILFVSFS   75 (505)
T ss_pred             CEEEEeccccceEEEEEcC-CCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHh---CCCc-CceEEEEEe
Confidence            3677999999999999998 9999999999998888889999999999999999999999987   5544 679999999


Q ss_pred             CCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         105 NQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      +|++++++||+ +|+||+|+|+|+|.|..
T Consensus        76 ~~~~~~v~~D~-~g~pl~~~i~w~D~R~~  103 (505)
T TIGR01314        76 TQMHSLIAFDE-NWQPLTRLITWADNRAV  103 (505)
T ss_pred             cccceeEEECC-CcCCcccceeccccchH
Confidence            99999999999 69999999999998884

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>PRK10939 autoinducer-2 (AI-2) kinase; Provisional

Probab=99.75  E-value=6.1e-18  Score=180.65  Aligned_cols=103  Identities=19%  Similarity=0.309  Sum_probs=92.8

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeee--cCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      +++|||+|||++|+++||. +|++++..+.+|+..  .+.+||+||||++||+++++++++++++   .++.+++|.|||
T Consensus         4 ~~lgID~GTts~Ka~l~d~-~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~---~~~~~~~I~aI~   79 (520)
T PRK10939          4 YLMALDAGTGSIRAVIFDL-NGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQK---AGIPASDIAAVS   79 (520)
T ss_pred             EEEEEecCCCceEEEEECC-CCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHH---cCCCccceEEEE
Confidence            7888999999999999998 999999998887644  4678999999999999999999999987   777778899999


Q ss_pred             EcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      +|+|++++++||+ +|+|+.+ +.|.|.|..
T Consensus        80 ~s~~~~~~v~~D~-~g~pl~~-~~~~D~Ra~  108 (520)
T PRK10939         80 ATSMREGIVLYDR-NGTEIWA-CANVDARAS  108 (520)
T ss_pred             EECCcccEEEECC-CCCEeeC-CcCCCcccH
Confidence            9999999999999 6999976 678888774

>KOG2517|consensus

Probab=99.72  E-value=3.2e-17  Score=167.64  Aligned_cols=111  Identities=37%  Similarity=0.529  Sum_probs=102.3

Q ss_pred             CcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          23 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        23 ~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      .++++|||+||||+|++|||..+|+.+..++.+.....+++||.||||.++|+++++||+++.+.+...+.....|.+||
T Consensus         5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig   84 (516)
T KOG2517|consen    5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG   84 (516)
T ss_pred             cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence            47899999999999999999559999999999999999999999999999999999999999888655556666788899


Q ss_pred             EcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      |++||++.++|++.+|+|++++|.|+|.|..
T Consensus        85 v~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~  115 (516)
T KOG2517|consen   85 VVNQREGSVLWNKRTGEPLTNIIVWMDHRAV  115 (516)
T ss_pred             EEecCCceEEeecCCCCcccceEEeeccccH
Confidence            9999999999999999999999999998884

>PLN02669 xylulokinase

Probab=99.69  E-value=6.4e-17  Score=173.06  Aligned_cols=105  Identities=15%  Similarity=0.192  Sum_probs=91.8

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeee---ecCCCCccccCHH----------HHHHHHHHHHHHHHHHHHh
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDIST---ISPQEGWAEQDPM----------EILQAVQTTMDRAIEKLSA   90 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~---~~~~~g~~e~d~~----------~~~~~~~~~i~~~~~~~~~   90 (500)
                      .+++|||+|||++|++|||. +|++++.++.+++.   .++.+||+||||+          .||+++..+++++. +   
T Consensus         8 ~~~LGiD~GT~s~Ka~l~d~-~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~-~---   82 (556)
T PLN02669          8 SLFLGFDSSTQSLKATVLDS-NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA-K---   82 (556)
T ss_pred             CeEEEEecccCCeEEEEEcC-CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH-H---
Confidence            46788999999999999998 99999999999974   3445678999998          68899999999987 4   


Q ss_pred             CCCCCCCeeEEEEcCCcceeEEeeCCCCCcc-------------------ccccccCCcccc
Q psy9709          91 HGLSRDDIVTLGITNQRETTVVWDLNTGEPL-------------------YNAIDKMPSLVY  133 (500)
Q Consensus        91 ~~~~~~~i~~Igis~~~~~~v~~d~~~g~pl-------------------~p~i~w~d~~~~  133 (500)
                      .+.+.++|+|||+|+|+|++|+||+++|+||                   +|+++|+|.|..
T Consensus        83 ~~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~  144 (556)
T PLN02669         83 EKFPFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTT  144 (556)
T ss_pred             cCCChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHH
Confidence            5667789999999999999999999558887                   799999998864

>TIGR02627 rhamnulo_kin rhamnulokinase

Probab=99.64  E-value=2.9e-16  Score=165.05  Aligned_cols=98  Identities=15%  Similarity=0.090  Sum_probs=87.2

Q ss_pred             EEEecCCCcceEEEEeCCC---CcEE-EEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          27 GVIDEGTRTVRFAIISALT---QEEV-VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        27 ~giDiGtt~~k~~v~d~~~---g~~l-~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      +|||+|||++|++++|. +   |+++ ...+.+++...+.++|.|+||+.||+++.++++++.+.       ..+|.+||
T Consensus         1 ~aiD~Gtt~~k~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-------~~~i~~Ig   72 (454)
T TIGR02627         1 VAVDLGASSGRVMLASY-ENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE-------GIAPDSIG   72 (454)
T ss_pred             CcEeccCCchheEEEEE-cCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc-------CCCceEEE
Confidence            36999999999999998 6   5676 66777788888899999999999999999999998642       34699999


Q ss_pred             EcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      ||+|++++|+||+ +|+||+|+|+|+|.|..
T Consensus        73 is~q~~~~v~~D~-~G~~l~p~i~w~D~R~~  102 (454)
T TIGR02627        73 IDTWGVDFVLLDQ-NGQRVGDPVSYRDSRTD  102 (454)
T ss_pred             EeccceeEEEEcC-CCCCccCceecCCCCCH
Confidence            9999999999999 69999999999998885

This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.

>COG1069 AraB Ribulose kinase [Energy production and conversion]

Probab=99.63  E-value=4.4e-16  Score=158.05  Aligned_cols=108  Identities=23%  Similarity=0.289  Sum_probs=99.8

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .|++|||+||.|.|++|||..+|++|+++..||+...+..+..||+++++|++++.+++.++++   +++++.+|+||||
T Consensus         3 ~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~---agv~~~~V~gIGv   79 (544)
T COG1069           3 AYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAK---AGVDPADVVGIGV   79 (544)
T ss_pred             cEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHH---cCCChhHeeEEEE
Confidence            4666799999999999999855999999999999999999999999999999999999999999   9999999999999


Q ss_pred             cCCcceeEEeeCCCCCccc---------cccccCCccccCCC
Q psy9709         104 TNQRETTVVWDLNTGEPLY---------NAIDKMPSLVYNTP  136 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~---------p~i~w~d~~~~~~t  136 (500)
                      +++ +|+|++|+ +|+|+.         ++|.|+|+|..++.
T Consensus        80 DaT-cSlvv~d~-~g~pl~v~~~~~~~~~vilWmDHrA~~EA  119 (544)
T COG1069          80 DAT-CSLVVIDR-DGNPLAVLPEFPNNPNVILWMDHRAVEEA  119 (544)
T ss_pred             cce-eeeEEECC-CCCeeccCCCCCCCCceEEeccchHHHHH
Confidence            999 99999999 699883         48899999997665

>TIGR01312 XylB D-xylulose kinase

Probab=99.63  E-value=9.3e-16  Score=162.76  Aligned_cols=100  Identities=31%  Similarity=0.408  Sum_probs=95.3

Q ss_pred             EEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCc
Q psy9709          28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR  107 (500)
Q Consensus        28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~~  107 (500)
                      |||+|||++|++|+|. +|+++++.+.+++..++.+||.||||++||+++++++++++++   .++++++|.|||+++|+
T Consensus         2 gIDiGtt~ik~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~---~~~~~~~I~gIgvs~~~   77 (481)
T TIGR01312         2 GIDLGTSGVKALLVDE-QGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQ---ASEMGQDIKGIGISGQM   77 (481)
T ss_pred             ceeecCcceEEEEECC-CCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHh---cCCCcccEEEEEEecCC
Confidence            6999999999999998 9999999999999888999999999999999999999999987   77778899999999999


Q ss_pred             ceeEEeeCCCCCccccccccCCccc
Q psy9709         108 ETTVVWDLNTGEPLYNAIDKMPSLV  132 (500)
Q Consensus       108 ~~~v~~d~~~g~pl~p~i~w~d~~~  132 (500)
                      +++|+||+ +|+|++|+++|.|.|.
T Consensus        78 ~g~v~~d~-~g~~l~~~i~W~D~r~  101 (481)
T TIGR01312        78 HGLVLLDA-NGEVLRPAILWNDTRT  101 (481)
T ss_pred             ceeEEECC-CcCCCccchhhhccch
Confidence            99999998 7999999999999887

D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.

>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=99.56  E-value=7.3e-15  Score=137.07  Aligned_cols=100  Identities=36%  Similarity=0.656  Sum_probs=84.1

Q ss_pred             CCceeeechhhhchhHHHHHHHHHcCC------CCC-HHHHHH--HHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEc
Q psy9709         401 ATPIYALEGSIAVAGAAVKWLRDNLNL------MDN-VRETES--LAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICG  471 (500)
Q Consensus       401 ~p~~~~~~g~~~~~G~~~~w~~~~~~~------~~~-~~~l~~--~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~G  471 (500)
                      .|+.|.++++++++|.+++|+++.++.      ..+ ++.+..  ..+..+++.+++|+|+|.|+|+|++|+++||+|+|
T Consensus        34 ~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~g  113 (198)
T PF02782_consen   34 IPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAELEAAASPPGSGGVFFLPFLSGERSPYWDPDARGSFIG  113 (198)
T ss_dssp             SEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHHHHHHHTSSTCTTSEEEECTTGBCTTTBBTTHCEEEEE
T ss_pred             CCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHHHHhhhccCcccceeeeeccccCccccccccccccccc
Confidence            567899999999999999999999743      111 133332  22333488899999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         472 MTQFTTKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       472 l~~~~~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      ++.+|+++|++||++||++|.+|++++.|
T Consensus       114 l~~~~~~~~~~rAv~Egia~~~~~~~~~l  142 (198)
T PF02782_consen  114 LSSDTTRADLARAVLEGIAFSLRQILEEL  142 (198)
T ss_dssp             EETTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHhHHHHHHHhhhhc
Confidence            99999999999999999999999999864

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=98.97  E-value=2.8e-09  Score=103.01  Aligned_cols=114  Identities=14%  Similarity=0.124  Sum_probs=81.0

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++|||+|||++|+++||  +|++++..+.              ||+.||+.+++++++++++   .+.+..+|.+|++|+
T Consensus         2 ~lGIDiGtts~K~vl~d--~g~il~~~~~--------------~~~~~~~~~~~~l~~~~~~---~~~~~~~i~~i~~Tg   62 (248)
T TIGR00241         2 SLGIDSGSTTTKMVLME--DGKVIGYKWL--------------DTTPVIEETARAILEALKE---AGIGLEPIDKIVATG   62 (248)
T ss_pred             EEEEEcChhheEEEEEc--CCEEEEEEEe--------------cCCCCHHHHHHHHHHHHHH---cCCChhheeEEEEEC
Confidence            56799999999999998  5899987764              4556889999999999877   777888999999999


Q ss_pred             CcceeEEeeCCCCCccccccccCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCCCeEEE
Q psy9709         106 QRETTVVWDLNTGEPLYNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVV  179 (500)
Q Consensus       106 ~~~~~v~~d~~~g~pl~p~i~w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~  179 (500)
                      |++++|+. . + .-+..+..-. .-.    .++  .       ...+  ..||||++.+|+..++ + |++..
T Consensus        63 ~~~~~v~~-~-~-~~~~ei~~~~-~g~----~~~--~-------~~~~--~vidiGgqd~k~i~~~-~-g~~~~  115 (248)
T TIGR00241        63 YGRHKVGF-A-D-KIVTEISCHG-KGA----NYL--A-------PEAR--GVIDIGGQDSKVIKID-D-GKVDD  115 (248)
T ss_pred             CCcccccc-c-C-CceEEhhHHH-HHH----HHH--C-------CCCC--EEEEecCCeeEEEEEC-C-CcEee
Confidence            99999874 3 1 1111111000 000    011  0       0111  3599999999999999 5 88763

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>PRK10640 rhaB rhamnulokinase; Provisional

Probab=98.91  E-value=3.6e-09  Score=111.69  Aligned_cols=85  Identities=15%  Similarity=0.154  Sum_probs=67.5

Q ss_pred             EEEeCCCCcEEEEE---EeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCcceeEEeeC
Q psy9709          39 AIISALTQEEVVSH---SMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDL  115 (500)
Q Consensus        39 ~v~d~~~g~~l~~~---~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~~~~~v~~d~  115 (500)
                      +-||. +|+.+...   +++. ...+.+++.++||+.||+++.++++++...       .++|.+||||+|++++++||+
T Consensus         3 ~~~~~-~~~~~~~~e~~r~~~-~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~-------~~~I~~Igis~q~~~~v~lD~   73 (471)
T PRK10640          3 ARYER-ECRSLTLREIHRFNN-GLHSQDGFDTWDVDSLESAIRLGLNKVCEE-------GIRIDSIGIDTWGVDYVLLDK   73 (471)
T ss_pred             eEEcC-CCceEEEEEEEecCC-CCeeeCCeeEECHHHHHHHHHHHHHHHhhc-------CCCccEEEEcCCcccEEEECC
Confidence            45665 45555433   2322 344678999999999999999999888542       467999999999999999999


Q ss_pred             CCCCccccccccCCcccc
Q psy9709         116 NTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       116 ~~g~pl~p~i~w~d~~~~  133 (500)
                       +|+||+|+|+|+|.|..
T Consensus        74 -~G~pL~pai~w~D~Ra~   90 (471)
T PRK10640         74 -QGQRVGLPVSYRDSRTD   90 (471)
T ss_pred             -CCCCcCCceeccCCCCH
Confidence             69999999999998873

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=98.41  E-value=5.3e-07  Score=87.09  Aligned_cols=70  Identities=14%  Similarity=0.219  Sum_probs=57.7

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      +++|||+|||++|++++| + |++++..+.              +++.||+.+.+++++++++   .+.+..+|.+|++|
T Consensus         1 ~~lGIDiGtts~K~vl~d-~-g~il~~~~~--------------~~~~~~~~~~~~l~~~~~~---~~~~~~~i~~i~~T   61 (248)
T TIGR00241         1 ISLGIDSGSTTTKMVLME-D-GKVIGYKWL--------------DTTPVIEETARAILEALKE---AGIGLEPIDKIVAT   61 (248)
T ss_pred             CEEEEEcChhheEEEEEc-C-CEEEEEEEe--------------cCCCCHHHHHHHHHHHHHH---cCCChhheeEEEEE
Confidence            478999999999999999 6 998876643              4556788888888888865   46667889999999


Q ss_pred             CCCceeEEE
Q psy9709         234 NQRETTVVW  242 (500)
Q Consensus       234 ~~~~~~v~~  242 (500)
                      ++++++++.
T Consensus        62 g~~~~~v~~   70 (248)
T TIGR00241        62 GYGRHKVGF   70 (248)
T ss_pred             CCCcccccc
Confidence            999888774

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=97.88  E-value=0.00014  Score=69.72  Aligned_cols=121  Identities=15%  Similarity=0.172  Sum_probs=71.4

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcE-EEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEE-VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~-l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      +.+|||+|+|++|++|+|. +++. .......++..       ..+|   .++..+++++++++   .+++..+|.+|+.
T Consensus         2 ~~~GIDiGStttK~Vlid~-~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~l~~~~~~---~g~~~~~i~~i~~   67 (262)
T TIGR02261         2 ITAGIDIGTGAIKTVLFEV-DGDKEECLAKRNDRIR-------QRDP---FKLAEDAYDDLLEE---AGLAAADVAYCAT   67 (262)
T ss_pred             eEEEEEcCcccEEEEEEec-CCCeeEEEEEEEecCC-------CCCH---HHHHHHHHHHHHHH---cCCChhheEEEEE
Confidence            4567999999999999995 4542 22223223211       1133   33456677777766   7777789999999


Q ss_pred             cCCcceeEEeeCCCCCccccccccCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCCCeEEEE
Q psy9709         104 TNQRETTVVWDLNTGEPLYNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVS  180 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~  180 (500)
                      |+.+......|+   . ++. |     .+|.+-+.|          .....-..||||++-+|++.+|.+ |++...
T Consensus        68 TGYGR~~~~a~~---~-vtE-I-----t~ha~GA~~----------~~p~~~tIiDIGGQD~K~I~~~~~-G~v~~f  123 (262)
T TIGR02261        68 TGEGESLAFHTG---H-FYS-M-----TTHARGAIY----------LNPEARAVLDIGALHGRAIRMDER-GKVEAY  123 (262)
T ss_pred             ECCchhhhhhcC---C-eeE-E-----eHHHHHHHH----------HCCCCCEEEEeCCCceEEEEEcCC-CcEeeE
Confidence            998765522222   1 111 1     111111111          000112359999999999999974 988643

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=97.88  E-value=0.00014  Score=70.71  Aligned_cols=113  Identities=12%  Similarity=0.119  Sum_probs=71.7

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +.+|||+|+|++|++|+|.  ++++.....++.          .+|.   +...+++++++++   .++..+++..+++|
T Consensus        33 ~~~GIDiGStt~K~Vlld~--~~i~~~~~~~tg----------~~~~---~~a~~~l~~~l~~---~g~~~~~v~~~~~T   94 (293)
T TIGR03192        33 ITCGIDVGSVSSQAVLVCD--GELYGYNSMRTG----------NNSP---DSAKNALQGIMDK---IGMKLEDINYVVGT   94 (293)
T ss_pred             EEEEEEeCchhEEEEEEeC--CEEEEEEeecCC----------CCHH---HHHHHHHHHHHHH---cCCcccceEEEEEE
Confidence            5677999999999999994  566655444332          1232   2456677777776   67767789999998


Q ss_pred             CCcceeEEeeCCCCCccccccccCCccccCCC-----CCCCCCCCCcccccc-CCEEEEEeccCCCceEEEEeCCCCeEE
Q psy9709         105 NQRETTVVWDLNTGEPLYNAIDKMPSLVYNTP-----PEPSSNTNNNSIQTQ-VPLIGVIDEGTRTVRFAIISALTQEEV  178 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~~t-----~~~~~~~~n~~~~~~-~~~~lgIDiGTts~k~~l~d~~~G~vi  178 (500)
                      +.+.-.++. .             |.-+.|-+     +.|          .. ...-..||||++-+|++.+|.+ |++.
T Consensus        95 GyGr~~~~~-a-------------~~~v~EItaha~Ga~~----------~~pp~v~tIIDIGGQDsK~I~~d~~-G~v~  149 (293)
T TIGR03192        95 GYGRVNVPF-A-------------HKAITEIACHARGANY----------MGGNAVRTILDMGGQDCKAIHCDEK-GKVT  149 (293)
T ss_pred             Ccchhhcch-h-------------hcceeeHHHHHHHHHH----------hcCCCCCEEEEeCCCceEEEEEcCC-CcEe
Confidence            877544432 1             11111111     111          00 0122459999999999999974 9876


Q ss_pred             EE
Q psy9709         179 VS  180 (500)
Q Consensus       179 ~~  180 (500)
                      ..
T Consensus       150 dF  151 (293)
T TIGR03192       150 NF  151 (293)
T ss_pred             ee
Confidence            43

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=97.62  E-value=0.00038  Score=70.48  Aligned_cols=116  Identities=17%  Similarity=0.164  Sum_probs=74.6

Q ss_pred             CcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          23 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        23 ~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      +.+.+|||+|+|++|++++|.  ++++.....++.           ++   .+...+++++++++   .+++.++|.+|+
T Consensus       143 ~g~~lGIDiGSTttK~Vl~dd--~~Ii~~~~~~t~-----------~~---~~~a~~~l~~~l~~---~Gl~~~di~~i~  203 (404)
T TIGR03286       143 EGLTLGIDSGSTTTKAVVMED--NEVIGTGWVPTT-----------KV---IESAEEAVERALEE---AGVSLEDVEAIG  203 (404)
T ss_pred             CCEEEEEEcChhheeeEEEcC--CeEEEEEEeecc-----------cH---HHHHHHHHHHHHHH---cCCCccceeEEE
Confidence            346778999999999999984  688877655431           12   33456677777766   788888999999


Q ss_pred             EcCCcceeEE--eeCCCCCccccccccCCccccCCC-----CCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCCC
Q psy9709         103 ITNQRETTVV--WDLNTGEPLYNAIDKMPSLVYNTP-----PEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQ  175 (500)
Q Consensus       103 is~~~~~~v~--~d~~~g~pl~p~i~w~d~~~~~~t-----~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G  175 (500)
                      +|+.+...+.  .+.             |.-..|-+     +.| ..      +.....-..||||++-.|++.++  +|
T Consensus       204 ~TGyGR~~i~~~~~a-------------d~iv~EItaha~GA~~-L~------p~~~~v~TIIDIGGQDsK~I~l~--~G  261 (404)
T TIGR03286       204 TTGYGRFTIGEHFGA-------------DLIQEELTVNSKGAVY-LA------DKQEGPATVIDIGGMDNKAISVW--DG  261 (404)
T ss_pred             eeeecHHHHhhhcCC-------------CceEEEEhhHHHHHHH-hc------ccCCCCcEEEEeCCCceEEEEEc--CC
Confidence            9998877764  222             11111111     111 00      00011235699999999999885  48


Q ss_pred             eEEE
Q psy9709         176 EEVV  179 (500)
Q Consensus       176 ~vi~  179 (500)
                      ++..
T Consensus       262 ~v~d  265 (404)
T TIGR03286       262 IPDN  265 (404)
T ss_pred             ceee
Confidence            7753

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>PRK13311 N-acetyl-D-glucosamine kinase; Provisional

Probab=97.59  E-value=0.00039  Score=67.50  Aligned_cols=86  Identities=10%  Similarity=0.081  Sum_probs=58.9

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  234 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~  234 (500)
                      ++|||+|.|++|++++|.. |+++.+.+.+++         ..+++++.+.+.+++++....       ...+.+|||+.
T Consensus         2 ~lgidiggt~i~~~l~d~~-g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgv~~   64 (256)
T PRK13311          2 YYGFDMGGTKIELGVFDEN-LQRIWHKRVPTP---------REDYPQLLQILRDLTEEADTY-------CGVQGSVGIGI   64 (256)
T ss_pred             EEEEEECCCcEEEEEECCC-CCEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCCCceEEEEe
Confidence            6899999999999999985 999977766543         135677777777777665421       12345888888


Q ss_pred             CCceeEEEeCCCCccccccee-eccCCC
Q psy9709         235 QRETTVVWDLNTGEPLYNAIV-WSDTRA  261 (500)
Q Consensus       235 ~~~~~v~~d~~~G~~l~~~i~-w~D~r~  261 (500)
                      ++    ++|.++|....+.+. |.+..-
T Consensus        65 pG----~vd~~~g~i~~~~~~~w~~~~l   88 (256)
T PRK13311         65 PG----LPNADDGTVFTANVPSAMGQPL   88 (256)
T ss_pred             cC----cEECCCCEEEccCCCcccCCCh
Confidence            77    778744554444343 655443

>KOG2531|consensus

Probab=97.58  E-value=0.00019  Score=72.24  Aligned_cols=87  Identities=18%  Similarity=0.290  Sum_probs=65.9

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCC-----------CccccCHH-HHHHHHHHHHHHHHHHHHhCC
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQE-----------GWAEQDPM-EILQAVQTTMDRAIEKLSAHG   92 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~-----------g~~e~d~~-~~~~~~~~~i~~~~~~~~~~~   92 (500)
                      ..+|+|++|+.+|++++|. +++|+......++...|+-           |..-..|- .|.+|+--.    +++|++++
T Consensus        10 ~fLG~DlSTQqlKaviids-~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDll----l~kl~~~~   84 (545)
T KOG2531|consen   10 SFLGFDLSTQQLKAVIIDS-NLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLL----LDKLREAG   84 (545)
T ss_pred             eeeeeecccceeEEEEEcC-CccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHH----HHHHHHcC
Confidence            3567999999999999998 9999999988876544331           23333454 666655444    44444478


Q ss_pred             CCCCCeeEEEEcCCcceeEEeeCC
Q psy9709          93 LSRDDIVTLGITNQRETTVVWDLN  116 (500)
Q Consensus        93 ~~~~~i~~Igis~~~~~~v~~d~~  116 (500)
                      .+..+|.||+=++|.|+.|.|-+.
T Consensus        85 ~d~~kV~aiSGagQQHGsVyWs~g  108 (545)
T KOG2531|consen   85 FDLSKVMAISGAGQQHGSVYWSKG  108 (545)
T ss_pred             CCHHHhhhhcccccccceeeehhh
Confidence            888999999999999999999884

>PRK09698 D-allose kinase; Provisional

Probab=97.57  E-value=0.00059  Score=67.91  Aligned_cols=91  Identities=11%  Similarity=0.095  Sum_probs=62.8

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      +..+++|||+|.|++|++++|.. |+++...+.+++.        ..+++. .+.+.+.+++++++.   +   .++.+|
T Consensus         2 ~~~~~lgidig~t~i~~~l~d~~-g~i~~~~~~~~~~--------~~~~~~-~~~l~~~i~~~~~~~---~---~~i~gi   65 (302)
T PRK09698          2 QKNVVLGIDMGGTHIRFCLVDAE-GEILHCEKKRTAE--------VIAPDL-VSGLGEMIDEYLRRF---N---ARCHGI   65 (302)
T ss_pred             CccEEEEEEcCCcEEEEEEEcCC-CCEEEEEEeCCcc--------ccchHH-HHHHHHHHHHHHHHc---C---CCeeEE
Confidence            56789999999999999999985 9999876655431        123333 666777777777642   1   478999


Q ss_pred             EEcCCCceeEEEeCCCCccc-cccee---eccCCC
Q psy9709         231 GITNQRETTVVWDLNTGEPL-YNAIV---WSDTRA  261 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l-~~~i~---w~D~r~  261 (500)
                      ||+.++    ++|.++|..+ .|.+.   |.+..-
T Consensus        66 gia~pG----~vd~~~g~i~~~~~~~~~~~~~~~l   96 (302)
T PRK09698         66 VMGFPA----LVSKDRRTVISTPNLPLTALDLYDL   96 (302)
T ss_pred             EEeCCc----ceeCCCCEEEecCCCCccccccCCH
Confidence            999887    7887434433 34454   554443

>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=97.51  E-value=0.00059  Score=68.30  Aligned_cols=87  Identities=16%  Similarity=0.152  Sum_probs=62.4

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|+|++|++++|. +|+++.+.+.+++..        .+.+.+.+.+.+.+++++++   .+ ...++.+||+
T Consensus         6 ~~~lgidIggt~i~~~l~d~-~g~~l~~~~~~~~~~--------~~~~~~~~~i~~~i~~~~~~---~~-~~~~~iGIgi   72 (314)
T COG1940           6 MTVLGIDIGGTKIKVALVDL-DGEILLRERIPTPTP--------DPEEAILEAILALVAELLKQ---AQ-GRVAIIGIGI   72 (314)
T ss_pred             cEEEEEEecCCEEEEEEECC-CCcEEEEEEEecCCC--------CchhHHHHHHHHHHHHHHHh---cC-CcCceEEEEe
Confidence            36777999999999999998 999999988888622        23357888888888888876   43 3456778887


Q ss_pred             cCCcceeEEeeCCCC-CccccccccC
Q psy9709         104 TNQRETTVVWDLNTG-EPLYNAIDKM  128 (500)
Q Consensus       104 s~~~~~~v~~d~~~g-~pl~p~i~w~  128 (500)
                      ++.+    .+|. .. ....|.+.|.
T Consensus        73 ~~pg----~~~~-~~~~~~~~~~~~~   93 (314)
T COG1940          73 PGPG----DVDN-GTVIVPAPNLGWW   93 (314)
T ss_pred             ccce----eccC-CcEEeecCCCCcc
Confidence            7644    4455 12 3345555554

>PRK09698 D-allose kinase; Provisional

Probab=97.51  E-value=0.00062  Score=67.75  Aligned_cols=76  Identities=12%  Similarity=0.149  Sum_probs=57.1

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|+|++|++++|. +|+++.+.+.+++.        ..+++. .+.+.+.+++++++   .+   .++.+|||
T Consensus         4 ~~~lgidig~t~i~~~l~d~-~g~i~~~~~~~~~~--------~~~~~~-~~~l~~~i~~~~~~---~~---~~i~gigi   67 (302)
T PRK09698          4 NVVLGIDMGGTHIRFCLVDA-EGEILHCEKKRTAE--------VIAPDL-VSGLGEMIDEYLRR---FN---ARCHGIVM   67 (302)
T ss_pred             cEEEEEEcCCcEEEEEEEcC-CCCEEEEEEeCCcc--------ccchHH-HHHHHHHHHHHHHH---cC---CCeeEEEE
Confidence            46777999999999999998 99999877665531        123444 77888888888776   32   57999999


Q ss_pred             cCCcceeEEeeCCCCC
Q psy9709         104 TNQRETTVVWDLNTGE  119 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~  119 (500)
                      +..+    ++|.+.|.
T Consensus        68 a~pG----~vd~~~g~   79 (302)
T PRK09698         68 GFPA----LVSKDRRT   79 (302)
T ss_pred             eCCc----ceeCCCCE
Confidence            9877    56774343

>PRK13311 N-acetyl-D-glucosamine kinase; Provisional

Probab=97.43  E-value=0.00066  Score=65.91  Aligned_cols=82  Identities=12%  Similarity=0.148  Sum_probs=55.6

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++|||+|+|++|++++|. +|+++.+.+.+++         ..+++++.+.+.+.+++....       ...+.+|||+.
T Consensus         2 ~lgidiggt~i~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgv~~   64 (256)
T PRK13311          2 YYGFDMGGTKIELGVFDE-NLQRIWHKRVPTP---------REDYPQLLQILRDLTEEADTY-------CGVQGSVGIGI   64 (256)
T ss_pred             EEEEEECCCcEEEEEECC-CCCEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCCCceEEEEe
Confidence            466999999999999998 9999987776543         135677787777777666432       12345788886


Q ss_pred             CcceeEEeeCCCCCccccccc-cC
Q psy9709         106 QRETTVVWDLNTGEPLYNAID-KM  128 (500)
Q Consensus       106 ~~~~~v~~d~~~g~pl~p~i~-w~  128 (500)
                      .+    ++|.++|....+.+. |.
T Consensus        65 pG----~vd~~~g~i~~~~~~~w~   84 (256)
T PRK13311         65 PG----LPNADDGTVFTANVPSAM   84 (256)
T ss_pred             cC----cEECCCCEEEccCCCccc
Confidence            66    567644554333333 54

>PRK09557 fructokinase; Reviewed

Probab=97.42  E-value=0.0008  Score=66.96  Aligned_cols=83  Identities=18%  Similarity=0.188  Sum_probs=59.3

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      +.+|||+|.|++|++++|.+ |+++...+.+++         .++++++.+.+.+.+++...+       ...+.+||++
T Consensus         1 ~~lgidig~t~~~~~l~d~~-g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgi~   63 (301)
T PRK09557          1 MRIGIDLGGTKIEVIALDDA-GEELFRKRLPTP---------RDDYQQTIEAIATLVDMAEQA-------TGQRGTVGVG   63 (301)
T ss_pred             CEEEEEECCCcEEEEEECCC-CCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHhh-------cCCceEEEec
Confidence            36899999999999999985 999877655543         135677777777777766542       1346789999


Q ss_pred             CCCceeEEEeCCCCcccccceeec
Q psy9709         234 NQRETTVVWDLNTGEPLYNAIVWS  257 (500)
Q Consensus       234 ~~~~~~v~~d~~~G~~l~~~i~w~  257 (500)
                      .++    ++|+++|....+...|.
T Consensus        64 ~pG----~vd~~~g~i~~~~~~~~   83 (301)
T PRK09557         64 IPG----SISPYTGLVKNANSTWL   83 (301)
T ss_pred             Ccc----cCcCCCCeEEecCCccc
Confidence            887    77865576555445573

>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase)

Probab=97.41  E-value=0.00066  Score=68.04  Aligned_cols=84  Identities=17%  Similarity=0.296  Sum_probs=63.8

Q ss_pred             EEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCc
Q psy9709          28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR  107 (500)
Q Consensus        28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~~  107 (500)
                      |||+|+|++|++++|. +|+++.+.+.+.+          .+++++.+.+.+.+++++++   .+....+|.+|||+..+
T Consensus         2 gidig~t~~~~~l~d~-~g~i~~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gIgva~pG   67 (318)
T TIGR00744         2 GVDIGGTTIKLGVVDE-EGNILSKWKVPTD----------TTPETIVDAIASAVDSFIQH---IAKVGHEIVAIGIGAPG   67 (318)
T ss_pred             EEEeCCCEEEEEEECC-CCCEEEEEEeCCC----------CCHHHHHHHHHHHHHHHHHh---cCCCccceEEEEEeccc
Confidence            6999999999999998 8999987655432          25788999999999998877   66667789999999766


Q ss_pred             ceeEEeeCCCCCccc-cccccCC
Q psy9709         108 ETTVVWDLNTGEPLY-NAIDKMP  129 (500)
Q Consensus       108 ~~~v~~d~~~g~pl~-p~i~w~d  129 (500)
                          ++|.++|.... |..-|.+
T Consensus        68 ----~vd~~~g~~~~~~~~~w~~   86 (318)
T TIGR00744        68 ----PVNRQRGTVYFAVNLDWKQ   86 (318)
T ss_pred             ----cccCCCCEEEecCCCCCCC
Confidence                55764455322 3334754

This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.

>PRK13310 N-acetyl-D-glucosamine kinase; Provisional

Probab=97.41  E-value=0.00079  Score=67.05  Aligned_cols=89  Identities=12%  Similarity=0.021  Sum_probs=61.7

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  234 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~  234 (500)
                      ++|||+|.|++|++++|.. |+++...+.+++         ..+++++.+.+.+.+++....       ...+.+|||+.
T Consensus         2 ~lgidig~t~i~~~l~d~~-g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~~igia~   64 (303)
T PRK13310          2 YYGFDIGGTKIELGVFNEK-LELQWEERVPTP---------RDSYDAFLDAVCELVAEADQR-------FGCKGSVGIGI   64 (303)
T ss_pred             eEEEEeCCCcEEEEEECCC-CcEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCCcceEEEeC
Confidence            5899999999999999985 999877655443         135778888888877776532       12345788888


Q ss_pred             CCceeEEEeCCCCccccccee-eccCCCHHH
Q psy9709         235 QRETTVVWDLNTGEPLYNAIV-WSDTRADNI  264 (500)
Q Consensus       235 ~~~~~v~~d~~~G~~l~~~i~-w~D~r~~~~  264 (500)
                      ++    ++|.++|....+.+. |.+..-.++
T Consensus        65 pG----~vd~~~g~~~~~~~~~w~~~~l~~~   91 (303)
T PRK13310         65 PG----MPETEDGTLYAANVPAASGKPLRAD   91 (303)
T ss_pred             CC----cccCCCCEEeccCcccccCCcHHHH
Confidence            87    778745665555554 665554433

>PRK09557 fructokinase; Reviewed

Probab=97.40  E-value=0.00064  Score=67.66  Aligned_cols=82  Identities=17%  Similarity=0.133  Sum_probs=59.2

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      .+|||+|+|++|++++|. +|+++.+.+.+++         .++++++.+.+.+.++++.+.   .    ..+.+|||+.
T Consensus         2 ~lgidig~t~~~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~----~~~~gIgi~~   64 (301)
T PRK09557          2 RIGIDLGGTKIEVIALDD-AGEELFRKRLPTP---------RDDYQQTIEAIATLVDMAEQA---T----GQRGTVGVGI   64 (301)
T ss_pred             EEEEEECCCcEEEEEECC-CCCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHhh---c----CCceEEEecC
Confidence            456999999999999998 8999987665543         136777888888877777543   2    3567899987


Q ss_pred             CcceeEEeeCCCCCccccccccC
Q psy9709         106 QRETTVVWDLNTGEPLYNAIDKM  128 (500)
Q Consensus       106 ~~~~~v~~d~~~g~pl~p~i~w~  128 (500)
                      .+    ++|.++|....+...|.
T Consensus        65 pG----~vd~~~g~i~~~~~~~~   83 (301)
T PRK09557         65 PG----SISPYTGLVKNANSTWL   83 (301)
T ss_pred             cc----cCcCCCCeEEecCCccc
Confidence            76    56764566554444563

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=97.37  E-value=0.0017  Score=64.41  Aligned_cols=115  Identities=20%  Similarity=0.215  Sum_probs=72.1

Q ss_pred             cCcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          22 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        22 ~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      ...+.+|||.|+|.+|+++.+. ++.++......++      |    .|.     ..+++++++++   .+....+|.++
T Consensus       133 ~~~~~LGID~GSTtTK~VLm~d-~~~I~~~~~~~t~------g----~p~-----~~~~l~~~le~---l~~~~~~I~~~  193 (396)
T COG1924         133 QGMYTLGIDSGSTTTKAVLMED-GKEILYGFYVSTK------G----RPI-----AEKALKEALEE---LGEKLEEILGL  193 (396)
T ss_pred             cCcEEEEEecCCcceeEEEEeC-CCeEEEEEEEcCC------C----Chh-----HHHHHHHHHHH---cccChheeeee
Confidence            3456788999999999999996 5545544443332      1    222     25566666666   55566899999


Q ss_pred             EEcCCcceeEEeeCCCCCccccccccCCccccCCC------CCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCCC
Q psy9709         102 GITNQRETTVVWDLNTGEPLYNAIDKMPSLVYNTP------PEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQ  175 (500)
Q Consensus       102 gis~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~~t------~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G  175 (500)
                      |+|+.+...+-           .-.-.|.-..|-+      .||  .       ...+  ..||||++=+|++-++ + |
T Consensus       194 ~~TGYGR~~v~-----------~~~~aD~~~~Ei~ah~kgA~~f--~-------p~~d--tIiDIGGQD~K~i~i~-d-G  249 (396)
T COG1924         194 GVTGYGRNLVG-----------AALGADKVVVEISAHAKGARYF--A-------PDVD--TVIDIGGQDSKVIKLE-D-G  249 (396)
T ss_pred             eeecccHHHhh-----------hhhcCCcceeeeehhHHHHHHh--C-------CCCc--EEEEecCcceeEEEEe-C-C
Confidence            99998866553           1111222222222      333  1       1111  4599999999999998 4 8


Q ss_pred             eEEE
Q psy9709         176 EEVV  179 (500)
Q Consensus       176 ~vi~  179 (500)
                      .+..
T Consensus       250 ~v~d  253 (396)
T COG1924         250 KVDD  253 (396)
T ss_pred             eeee
Confidence            7664

>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase)

Probab=97.37  E-value=0.001  Score=66.74  Aligned_cols=89  Identities=16%  Similarity=0.294  Sum_probs=65.1

Q ss_pred             EEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCC
Q psy9709         156 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ  235 (500)
Q Consensus       156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~~  235 (500)
                      +|||+|.|++|++++|.. |+++...+.+.+          .+++++.+.+.+.+++++++   .+....++.+|||+.+
T Consensus         1 lgidig~t~~~~~l~d~~-g~i~~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gIgva~p   66 (318)
T TIGR00744         1 IGVDIGGTTIKLGVVDEE-GNILSKWKVPTD----------TTPETIVDAIASAVDSFIQH---IAKVGHEIVAIGIGAP   66 (318)
T ss_pred             CEEEeCCCEEEEEEECCC-CCEEEEEEeCCC----------CCHHHHHHHHHHHHHHHHHh---cCCCccceEEEEEecc
Confidence            589999999999999985 999876655432          25778888888888888765   3445568999999988


Q ss_pred             CceeEEEeCCCCcccc-cceeeccCCCH
Q psy9709         236 RETTVVWDLNTGEPLY-NAIVWSDTRAD  262 (500)
Q Consensus       236 ~~~~v~~d~~~G~~l~-~~i~w~D~r~~  262 (500)
                      +    ++|.++|.... |.+.|.+..-.
T Consensus        67 G----~vd~~~g~~~~~~~~~w~~~~l~   90 (318)
T TIGR00744        67 G----PVNRQRGTVYFAVNLDWKQEPLK   90 (318)
T ss_pred             c----cccCCCCEEEecCCCCCCCCCHH
Confidence            7    77864465433 44458765433

This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.

>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []

Probab=97.36  E-value=0.001  Score=60.66  Aligned_cols=87  Identities=21%  Similarity=0.346  Sum_probs=66.5

Q ss_pred             EEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCC
Q psy9709         157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR  236 (500)
Q Consensus       157 gIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~~~  236 (500)
                      |||+|+++++++++|.+ |+++...+.+++          .+++++.+.+.+.++++..+.       ... +|||+.++
T Consensus         1 gidig~~~i~~~l~d~~-g~ii~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~~-------~~~-gIgi~~pG   61 (179)
T PF00480_consen    1 GIDIGGTSIRIALVDLD-GEIIYSESIPTP----------TSPEELLDALAELIERLLADY-------GRS-GIGISVPG   61 (179)
T ss_dssp             EEEEESSEEEEEEEETT-SCEEEEEEEEHH----------SSHHHHHHHHHHHHHHHHHHH-------TCE-EEEEEESS
T ss_pred             CEEECCCEEEEEEECCC-CCEEEEEEEECC----------CCHHHHHHHHHHHHHHHHhhc-------ccc-cEEEeccc
Confidence            79999999999999985 999988777664          478889999999999988764       122 88999888


Q ss_pred             ceeEEEeCCCCcccc-cceeeccCCCHHHHH
Q psy9709         237 ETTVVWDLNTGEPLY-NAIVWSDTRADNIVD  266 (500)
Q Consensus       237 ~~~v~~d~~~G~~l~-~~i~w~D~r~~~~~~  266 (500)
                          ++|.+.|..+. |...|.+.+-.+.++
T Consensus        62 ----~v~~~~g~i~~~~~~~~~~~~l~~~l~   88 (179)
T PF00480_consen   62 ----IVDSEKGRIISSPNPGWENIPLKEELE   88 (179)
T ss_dssp             ----EEETTTTEEEECSSGTGTTCEHHHHHH
T ss_pred             ----cCcCCCCeEEecCCCCcccCCHHHHhh
Confidence                89985445554 555688866544443

This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....

>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.0014  Score=65.59  Aligned_cols=97  Identities=15%  Similarity=0.165  Sum_probs=64.9

Q ss_pred             ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709         150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT  229 (500)
Q Consensus       150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~  229 (500)
                      .+..+++|||||.|++|++++|.. |+++...+.+++..        .+.+.+.+.+.+.++++.++.   + ....+.+
T Consensus         3 ~~~~~~lgidIggt~i~~~l~d~~-g~~l~~~~~~~~~~--------~~~~~~~~~i~~~i~~~~~~~---~-~~~~~iG   69 (314)
T COG1940           3 PEAMTVLGIDIGGTKIKVALVDLD-GEILLRERIPTPTP--------DPEEAILEAILALVAELLKQA---Q-GRVAIIG   69 (314)
T ss_pred             ccCcEEEEEEecCCEEEEEEECCC-CcEEEEEEEecCCC--------CchhHHHHHHHHHHHHHHHhc---C-CcCceEE
Confidence            345689999999999999999985 99998887877631        222467777777777777642   2 3455778


Q ss_pred             EEEcCCCceeEEEeCCCC-cccccceeecc-CCCHHH
Q psy9709         230 LGITNQRETTVVWDLNTG-EPLYNAIVWSD-TRADNI  264 (500)
Q Consensus       230 I~vs~~~~~~v~~d~~~G-~~l~~~i~w~D-~r~~~~  264 (500)
                      ||+++++    .+|. .. ....|.+.|.+ ..-.+.
T Consensus        70 Igi~~pg----~~~~-~~~~~~~~~~~~~~~~~l~~~  101 (314)
T COG1940          70 IGIPGPG----DVDN-GTVIVPAPNLGWWNGVDLAEE  101 (314)
T ss_pred             EEeccce----eccC-CcEEeecCCCCccccccHHHH
Confidence            8887665    6665 22 22235555544 334333

>PRK13310 N-acetyl-D-glucosamine kinase; Provisional

Probab=97.29  E-value=0.001  Score=66.25  Aligned_cols=82  Identities=12%  Similarity=0.072  Sum_probs=58.1

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++|||+|+|++|++++|. +|+++.+.+.+++         ..+++++.+.+.+.++++...   .    ..+.+|||+.
T Consensus         2 ~lgidig~t~i~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~----~~~~~igia~   64 (303)
T PRK13310          2 YYGFDIGGTKIELGVFNE-KLELQWEERVPTP---------RDSYDAFLDAVCELVAEADQR---F----GCKGSVGIGI   64 (303)
T ss_pred             eEEEEeCCCcEEEEEECC-CCcEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh---c----CCcceEEEeC
Confidence            467999999999999998 8999987765443         135788888888888877543   2    2345788887


Q ss_pred             CcceeEEeeCCCCCccccccc-cC
Q psy9709         106 QRETTVVWDLNTGEPLYNAID-KM  128 (500)
Q Consensus       106 ~~~~~v~~d~~~g~pl~p~i~-w~  128 (500)
                      .+    ++|.++|....+.+. |.
T Consensus        65 pG----~vd~~~g~~~~~~~~~w~   84 (303)
T PRK13310         65 PG----MPETEDGTLYAANVPAAS   84 (303)
T ss_pred             CC----cccCCCCEEeccCccccc
Confidence            66    567645655444444 54

>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]

Probab=97.25  E-value=0.00083  Score=65.05  Aligned_cols=68  Identities=16%  Similarity=0.269  Sum_probs=52.4

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      .|++|||-|+|++++.|.|. +|+++.+....-..+      ....+++-+..+.+++.+.+.+   ++.++++|.++
T Consensus         5 ~~~lGVDGGGTkt~a~l~~~-~g~vlg~g~sGpAN~------~~~~~e~A~~ni~~ai~~A~~~---aG~~~~~i~~~   72 (301)
T COG2971           5 PYFLGVDGGGTKTRAVLADE-DGNVLGRGKSGPANI------QLVGKEEAVRNIKDAIREALDE---AGLKPDEIAAI   72 (301)
T ss_pred             cEEEEEccCCcceEEEEEcC-CCcEEEEeccCCcee------cccchHHHHHHHHHHHHHHHHh---cCCCHHHhCce
Confidence            56777999999999999997 999999875332211      2223488999999999999887   88888876554

>PRK12408 glucokinase; Provisional

Probab=97.09  E-value=0.0007  Score=68.42  Aligned_cols=77  Identities=12%  Similarity=0.098  Sum_probs=45.0

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcE------EEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEE------VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD   97 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~------l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~   97 (500)
                      ..++++|||+|++|++++|. +|++      +...+.+++               .++.+.+.+++++++       ..+
T Consensus        16 ~~~L~~DIGGT~i~~al~d~-~g~~~~~~~~~~~~~~~t~---------------~~~~~~~~i~~~~~~-------~~~   72 (336)
T PRK12408         16 ESFVAADVGGTHVRVALVCA-SPDAAKPVELLDYRTYRCA---------------DYPSLAAILADFLAE-------CAP   72 (336)
T ss_pred             ccEEEEEcChhhhheeEEec-cCCccccccccceeEecCC---------------CccCHHHHHHHHHhc-------CCC
Confidence            34677999999999999997 7773      333222221               112244445555432       124


Q ss_pred             eeEEEEcCCcceeEEeeCCCCCccccccccC
Q psy9709          98 IVTLGITNQRETTVVWDLNTGEPLYNAIDKM  128 (500)
Q Consensus        98 i~~Igis~~~~~~v~~d~~~g~pl~p~i~w~  128 (500)
                      +.+|||+.-+. .  ++.  |....+-+.|.
T Consensus        73 ~~~igIg~pG~-~--~~~--g~v~~~nl~w~   98 (336)
T PRK12408         73 VRRGVIASAGY-A--LDD--GRVITANLPWT   98 (336)
T ss_pred             cCEEEEEecCC-c--eEC--CEEEecCCCCc
Confidence            77888886664 1  333  66555445674

>smart00732 YqgFc Likely ribonuclease with RNase H fold

Probab=97.06  E-value=0.0022  Score=52.23  Aligned_cols=30  Identities=13%  Similarity=0.143  Sum_probs=25.7

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeee
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDI   56 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~   56 (500)
                      ++|||+|+|.+|++++|. +|+++...+.+.
T Consensus         3 ilgiD~Ggt~i~~a~~d~-~g~~~~~~~~~~   32 (99)
T smart00732        3 VLGLDPGRKGIGVAVVDE-TGKLADPLEVIP   32 (99)
T ss_pred             EEEEccCCCeEEEEEECC-CCCEecCEEEEE
Confidence            567999999999999998 899998766544

YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.

>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []

Probab=97.04  E-value=0.0024  Score=58.23  Aligned_cols=82  Identities=22%  Similarity=0.310  Sum_probs=62.8

Q ss_pred             EEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCc
Q psy9709          28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR  107 (500)
Q Consensus        28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~~  107 (500)
                      |||+|+++++++++|. +|+++.+.+.+++          .+++++.+.+.+.++++..+   .+    .. +|||+..+
T Consensus         1 gidig~~~i~~~l~d~-~g~ii~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~---~~----~~-gIgi~~pG   61 (179)
T PF00480_consen    1 GIDIGGTSIRIALVDL-DGEIIYSESIPTP----------TSPEELLDALAELIERLLAD---YG----RS-GIGISVPG   61 (179)
T ss_dssp             EEEEESSEEEEEEEET-TSCEEEEEEEEHH----------SSHHHHHHHHHHHHHHHHHH---HT----CE-EEEEEESS
T ss_pred             CEEECCCEEEEEEECC-CCCEEEEEEEECC----------CCHHHHHHHHHHHHHHHHhh---cc----cc-cEEEeccc
Confidence            6999999999999998 9999998887764          47899999999999999877   22    22 88888777


Q ss_pred             ceeEEeeCCCCCcc-ccccccCCccc
Q psy9709         108 ETTVVWDLNTGEPL-YNAIDKMPSLV  132 (500)
Q Consensus       108 ~~~v~~d~~~g~pl-~p~i~w~d~~~  132 (500)
                          ++|.+.|..+ .|...|.+-..
T Consensus        62 ----~v~~~~g~i~~~~~~~~~~~~l   83 (179)
T PF00480_consen   62 ----IVDSEKGRIISSPNPGWENIPL   83 (179)
T ss_dssp             ----EEETTTTEEEECSSGTGTTCEH
T ss_pred             ----cCcCCCCeEEecCCCCcccCCH
Confidence                7888533333 34455765333

This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....

>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family

Probab=97.01  E-value=0.00064  Score=61.86  Aligned_cols=79  Identities=15%  Similarity=0.210  Sum_probs=63.7

Q ss_pred             EEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCC
Q psy9709          27 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ  106 (500)
Q Consensus        27 ~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~  106 (500)
                      +|||+|+|++-++++|. ++.+++..+.++.            |++....+.++++++++.   .++++++|..|-++++
T Consensus         2 igIDvGGT~TD~v~~d~-~~~~~~~~K~~Tt------------~~d~~~gi~~al~~l~~~---~~~~~~~i~~v~~gTT   65 (176)
T PF05378_consen    2 IGIDVGGTFTDAVLLDE-DTGVVATAKVPTT------------PDDPAEGILEALDALLEE---SGIDPSDIDRVRHGTT   65 (176)
T ss_pred             eeEecCCCcEEEEEEeC-CCCEEEEEEeCCC------------CcCHHHHHHHHHHhhhcc---cCCChhhCcEEEeccH
Confidence            36999999999999998 6678888877663            455778888899998877   7777899999999998


Q ss_pred             cceeEEeeCCCCCccc
Q psy9709         107 RETTVVWDLNTGEPLY  122 (500)
Q Consensus       107 ~~~~v~~d~~~g~pl~  122 (500)
                      ..+=.++-+ +|.++.
T Consensus        66 ~~tNAl~e~-~g~~v~   80 (176)
T PF05378_consen   66 VATNALLER-KGARVG   80 (176)
T ss_pred             HHHHHHHhc-cCCCce
Confidence            877777777 475543

>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis

Probab=97.00  E-value=0.0018  Score=63.30  Aligned_cols=68  Identities=18%  Similarity=0.247  Sum_probs=51.4

Q ss_pred             EEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          27 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        27 ~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +|||.|+|++|++|+|. +|+++.+.....      .+....+.++..+.+.+++++++++   .+.+..+|..+.+.
T Consensus         1 lGIDgGgTkt~~vl~d~-~g~il~~~~~~~------~n~~~~~~~~~~~~i~~~i~~~~~~---~~~~~~~i~~~~~g   68 (271)
T PF01869_consen    1 LGIDGGGTKTKAVLVDE-NGNILGRGKGGG------ANYNSVGFEEAMENIKEAIEEALSQ---AGLSPDDIAAICIG   68 (271)
T ss_dssp             EEEEECSSEEEEEEEET-TSEEEEEEEES-------TTHHHHHHHHHHHHHHHHHHHHHHH---HTTSTTCCCEEEEE
T ss_pred             CEEeeChheeeeEEEeC-CCCEEEEEEeCC------CCCCCCCcchhhhHHHHHHHHHHHH---cCCCccccceeeee
Confidence            47999999999999998 999887665322      2223356788899999999999888   67777777666433

The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.

>PRK13321 pantothenate kinase; Reviewed

Probab=96.73  E-value=0.0052  Score=59.58  Aligned_cols=63  Identities=16%  Similarity=0.284  Sum_probs=43.0

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      +++||+|.|++|+++||. + +++...+.+++        ...+++++...+.+.++    +   .+.+.++|.+|++++
T Consensus         2 iL~IDIGnT~ik~gl~~~-~-~i~~~~~~~T~--------~~~~~~~~~~~l~~l~~----~---~~~~~~~i~~i~vss   64 (256)
T PRK13321          2 LLLIDVGNTNIKLGVFDG-D-RLLRSFRLPTD--------KSRTSDELGILLLSLFR----H---AGLDPEDIRAVVISS   64 (256)
T ss_pred             EEEEEECCCeEEEEEEEC-C-EEEEEEEEecC--------CCCCHHHHHHHHHHHHH----H---cCCChhhCCeEEEEe
Confidence            456999999999999995 4 77776665554        22345556655555443    3   344456799999997

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=96.71  E-value=0.0089  Score=58.36  Aligned_cols=67  Identities=16%  Similarity=0.164  Sum_probs=45.3

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      .+++|||+|+|++|++++| + ++++.....++.          .++.   +...+++++++++   .+....++..+++
T Consensus        32 m~~~GIDiGStt~K~Vlld-~-~~i~~~~~~~tg----------~~~~---~~a~~~l~~~l~~---~g~~~~~v~~~~~   93 (293)
T TIGR03192        32 IITCGIDVGSVSSQAVLVC-D-GELYGYNSMRTG----------NNSP---DSAKNALQGIMDK---IGMKLEDINYVVG   93 (293)
T ss_pred             cEEEEEEeCchhEEEEEEe-C-CEEEEEEeecCC----------CCHH---HHHHHHHHHHHHH---cCCcccceEEEEE
Confidence            4789999999999999999 4 666654433222          1222   2455666666665   3555668888888


Q ss_pred             cCCCc
Q psy9709         233 TNQRE  237 (500)
Q Consensus       233 s~~~~  237 (500)
                      |+.+.
T Consensus        94 TGyGr   98 (293)
T TIGR03192        94 TGYGR   98 (293)
T ss_pred             ECcch
Confidence            87763

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=96.62  E-value=0.0085  Score=60.89  Aligned_cols=72  Identities=22%  Similarity=0.336  Sum_probs=50.2

Q ss_pred             ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709         150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT  229 (500)
Q Consensus       150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~  229 (500)
                      +.+.+++|||+|+|++|++++| + ++++.....++.           ++   .+.+.+++++++++   .+++..+|..
T Consensus       141 ~~~g~~lGIDiGSTttK~Vl~d-d-~~Ii~~~~~~t~-----------~~---~~~a~~~l~~~l~~---~Gl~~~di~~  201 (404)
T TIGR03286       141 RQEGLTLGIDSGSTTTKAVVME-D-NEVIGTGWVPTT-----------KV---IESAEEAVERALEE---AGVSLEDVEA  201 (404)
T ss_pred             ccCCEEEEEEcChhheeeEEEc-C-CeEEEEEEeecc-----------cH---HHHHHHHHHHHHHH---cCCCccceeE
Confidence            3455899999999999999998 4 778765433221           11   23455666666654   4667788999


Q ss_pred             EEEcCCCceeE
Q psy9709         230 LGITNQRETTV  240 (500)
Q Consensus       230 I~vs~~~~~~v  240 (500)
                      |++|+.+...+
T Consensus       202 i~~TGyGR~~i  212 (404)
T TIGR03286       202 IGTTGYGRFTI  212 (404)
T ss_pred             EEeeeecHHHH
Confidence            99998875554

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=96.62  E-value=0.0094  Score=57.35  Aligned_cols=72  Identities=18%  Similarity=0.290  Sum_probs=45.5

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEE-EEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEV-VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi-~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      +++|||+|+|++|++++|.+ ++.+ ......++.    .+   .+|   .+...+++++++++   .+++..+|..|+.
T Consensus         2 ~~~GIDiGStttK~Vlid~~-~~~~~~~~~~~~~~----~~---~~~---~~~~~~~l~~~~~~---~g~~~~~i~~i~~   67 (262)
T TIGR02261         2 ITAGIDIGTGAIKTVLFEVD-GDKEECLAKRNDRI----RQ---RDP---FKLAEDAYDDLLEE---AGLAAADVAYCAT   67 (262)
T ss_pred             eEEEEEcCcccEEEEEEecC-CCeeEEEEEEEecC----CC---CCH---HHHHHHHHHHHHHH---cCCChhheEEEEE
Confidence            57999999999999999953 4322 222222221    11   122   23355666666654   4666678999999


Q ss_pred             cCCCcee
Q psy9709         233 TNQRETT  239 (500)
Q Consensus       233 s~~~~~~  239 (500)
                      |+.+...
T Consensus        68 TGYGR~~   74 (262)
T TIGR02261        68 TGEGESL   74 (262)
T ss_pred             ECCchhh
Confidence            9887544

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>PRK13318 pantothenate kinase; Reviewed

Probab=96.61  E-value=0.0082  Score=58.29  Aligned_cols=63  Identities=17%  Similarity=0.246  Sum_probs=43.3

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      +++||+|.|++|.+++|  +|+++.+.+.+++.        ...++++.    +.++++++.   .+.+..++.+|++++
T Consensus         2 iL~IDIGnT~iK~al~d--~g~i~~~~~~~t~~--------~~~~~~~~----~~l~~l~~~---~~~~~~~i~~I~iss   64 (258)
T PRK13318          2 LLAIDVGNTNTVFGLYE--GGKLVAHWRISTDS--------RRTADEYG----VWLKQLLGL---SGLDPEDITGIIISS   64 (258)
T ss_pred             EEEEEECCCcEEEEEEE--CCEEEEEEEEeCCC--------CCCHHHHH----HHHHHHHHH---cCCCcccCceEEEEE
Confidence            45699999999999999  38888776665541        12344444    444555554   555556799999997

>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X

Probab=96.55  E-value=0.0052  Score=63.15  Aligned_cols=81  Identities=22%  Similarity=0.264  Sum_probs=49.6

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeec-CCC-----Ccccc-C-HHHHHHHHHHHHHHHHHHHH-hCCCCC
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTIS-PQE-----GWAEQ-D-PMEILQAVQTTMDRAIEKLS-AHGLSR   95 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~-~~~-----g~~e~-d-~~~~~~~~~~~i~~~~~~~~-~~~~~~   95 (500)
                      |=++||+|||++.+.++|..+|++++..+...+... ..+     .++.. + .+++-+.+.+.++++++++- +.++++
T Consensus         2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~   81 (412)
T PF14574_consen    2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP   81 (412)
T ss_dssp             EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred             EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            446799999999999999878999999988777542 221     12221 1 34555555555555554432 278888


Q ss_pred             CCeeEEEEcC
Q psy9709          96 DDIVTLGITN  105 (500)
Q Consensus        96 ~~i~~Igis~  105 (500)
                      ++|..|.|++
T Consensus        82 ~~I~~i~i~G   91 (412)
T PF14574_consen   82 EDIYEIVIVG   91 (412)
T ss_dssp             GGEEEEEEEE
T ss_pred             HHeEEEEEEe
Confidence            9998888874

>PRK05082 N-acetylmannosamine kinase; Provisional

Probab=96.54  E-value=0.011  Score=58.59  Aligned_cols=89  Identities=10%  Similarity=0.071  Sum_probs=58.1

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  234 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~  234 (500)
                      ++|||+|.++++++++|.+ |+++...+.+++.        ..+++++.+.+.+.+++...          ++.+|||+.
T Consensus         3 ~lgvdig~~~i~~~l~dl~-g~i~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~----------~~~~igi~~   63 (291)
T PRK05082          3 TLAIDIGGTKIAAALVGED-GQIRQRRQIPTPA--------SQTPEALRQALSALVSPLQA----------QADRVAVAS   63 (291)
T ss_pred             EEEEEECCCEEEEEEEcCC-CcEEEEEEecCCC--------CCCHHHHHHHHHHHHHHhhh----------cCcEEEEeC
Confidence            6899999999999999985 9998766665541        12466677777766665432          356788888


Q ss_pred             CCceeEEEeCCCCcccc-cce-eeccCCCHHHHH
Q psy9709         235 QRETTVVWDLNTGEPLY-NAI-VWSDTRADNIVD  266 (500)
Q Consensus       235 ~~~~~v~~d~~~G~~l~-~~i-~w~D~r~~~~~~  266 (500)
                      ++    ++|...+..+. +.+ -|.+..-.++++
T Consensus        64 pG----~vd~~~~~~~~~~~~~~w~~~~l~~~l~   93 (291)
T PRK05082         64 TG----IINDGILTALNPHNLGGLLHFPLVQTLE   93 (291)
T ss_pred             cc----cccCCeeEEecCCCCccccCCChHHHHH
Confidence            76    56652112122 223 487776555443

>smart00732 YqgFc Likely ribonuclease with RNase H fold

Probab=96.53  E-value=0.0076  Score=49.01  Aligned_cols=29  Identities=10%  Similarity=0.134  Sum_probs=24.3

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeee
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMD  184 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~  184 (500)
                      +||||+|+|.+|++++|.+ |+++...+.+
T Consensus         3 ilgiD~Ggt~i~~a~~d~~-g~~~~~~~~~   31 (99)
T smart00732        3 VLGLDPGRKGIGVAVVDET-GKLADPLEVI   31 (99)
T ss_pred             EEEEccCCCeEEEEEECCC-CCEecCEEEE
Confidence            6899999999999999975 9888655443

YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.

>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional

Probab=96.49  E-value=0.023  Score=60.52  Aligned_cols=148  Identities=8%  Similarity=0.067  Sum_probs=83.4

Q ss_pred             cEEEEEecCCCcceEEEEeCCCC--cEEEEEEeeeeeec--CCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTIS--PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   99 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g--~~l~~~~~~~~~~~--~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~   99 (500)
                      .++++||+||.|+|..|++..+|  +++...+..+..-.  ...|  .-+++ -.+..++++++..+.+++.+  .++|.
T Consensus         6 ~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e-~i~r~~~~L~~F~~~~~~~~--v~~i~   80 (496)
T PRK11031          6 SLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDN--ALSNE-AMERGWQCLRLFAERLQDIP--PSQIR   80 (496)
T ss_pred             CEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCC--CcCHH-HHHHHHHHHHHHHHHHHhCC--CCeEE
Confidence            57889999999999999996334  33434433333211  1111  22333 44555677776655543343  46899


Q ss_pred             EEEEcCCcceeEEeeCCCCCccccccc--------cCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEe
Q psy9709         100 TLGITNQRETTVVWDLNTGEPLYNAID--------KMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIIS  171 (500)
Q Consensus       100 ~Igis~~~~~~v~~d~~~g~pl~p~i~--------w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d  171 (500)
                      +++-++.|      |+.|++-+-.-+-        +.+..-.....|. . -.|. ....+. .+.+|||+.|+-.++++
T Consensus        81 ~vATsAvR------eA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~-g-v~~~-l~~~~~-~lviDIGGGStEl~~~~  150 (496)
T PRK11031         81 VVATATLR------LAVNADEFLAKAQEILGCPVQVISGEEEARLIYQ-G-VAHT-TGGADQ-RLVVDIGGASTELVTGT  150 (496)
T ss_pred             EEEeHHHH------cCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHH-h-hhhc-cCCCCC-EEEEEecCCeeeEEEec
Confidence            99999888      5544443322221        1111000000222 1 1111 111122 57799999999999998


Q ss_pred             CCCCeEEEEeeeecccc
Q psy9709         172 ALTQEEVVSHSMDISTI  188 (500)
Q Consensus       172 ~~~G~vi~~~~~~~~~~  188 (500)
                       + +++....+.+...+
T Consensus       151 -~-~~~~~~~Sl~lG~v  165 (496)
T PRK11031        151 -G-AQATSLFSLSMGCV  165 (496)
T ss_pred             -C-CceeeeeEEeccch
Confidence             3 78887777777654

>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X

Probab=96.48  E-value=0.0082  Score=61.72  Aligned_cols=82  Identities=22%  Similarity=0.241  Sum_probs=52.4

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCC------eEE-EC-hHHHHHHHHHHHHHHHHHHH-hCCCCC
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEG------WAE-QD-PMEILQAVQTTMDRAIEKLS-AHGLSR  224 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g------~~~-~d-~~~~~~~i~~~l~~~~~~~~-~~~~~~  224 (500)
                      |-++||+|||++.+.++|..+|++++..+..+|+.....+      +.. .+ .+++-+.+.+.+.++++++. +.++++
T Consensus         2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~   81 (412)
T PF14574_consen    2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP   81 (412)
T ss_dssp             EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred             EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            6789999999999999999889999999998887643221      112 11 34455555566666555432 457888


Q ss_pred             CCeeEEEEcCC
Q psy9709         225 DDIVTLGITNQ  235 (500)
Q Consensus       225 ~~I~~I~vs~~  235 (500)
                      ++|..|.|++.
T Consensus        82 ~~I~~i~i~GN   92 (412)
T PF14574_consen   82 EDIYEIVIVGN   92 (412)
T ss_dssp             GGEEEEEEEE-
T ss_pred             HHeEEEEEEec
Confidence            99999988764

>PRK10854 exopolyphosphatase; Provisional

Probab=96.44  E-value=0.046  Score=58.58  Aligned_cols=146  Identities=11%  Similarity=0.112  Sum_probs=82.2

Q ss_pred             EEEEEecCCCcceEEEEeCCCC--cEEEEEEeeeeeecCCCCcc---ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWA---EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   99 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g--~~l~~~~~~~~~~~~~~g~~---e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~   99 (500)
                      .+++||+|+.++|..|++..+|  +++...+..+..   ..|-.   .-++ +-.+..++++++..+.+++.+  .+++.
T Consensus        12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrL---g~g~~~~g~Ls~-e~~~r~~~~L~~F~~~~~~~~--v~~v~   85 (513)
T PRK10854         12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHL---ADGLDSDNMLSE-EAMERGLNCLSLFAERLQGFS--PANVC   85 (513)
T ss_pred             EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEEC---CCCcCCCCCcCH-HHHHHHHHHHHHHHHHHHhCC--CCeEE
Confidence            5788999999999999996334  444444444332   22211   2233 345555677777665543344  46899


Q ss_pred             EEEEcCCcceeEEeeCCCCCccccccc--------cCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEe
Q psy9709         100 TLGITNQRETTVVWDLNTGEPLYNAID--------KMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIIS  171 (500)
Q Consensus       100 ~Igis~~~~~~v~~d~~~g~pl~p~i~--------w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d  171 (500)
                      +++-++.+      +++|+..+-.-+-        |.+..-...-.|. .. .+.. ...+ -.+.+|||+.|+-.++++
T Consensus        86 ~vATsAlR------eA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~-gv-~~~l-~~~~-~~lvvDIGGGStEl~~~~  155 (513)
T PRK10854         86 IVGTHTLR------QALNATDFLKRAEKVIPYPIEIISGNEEARLIFM-GV-EHTQ-PEKG-RKLVIDIGGGSTELVIGE  155 (513)
T ss_pred             EEehHHHH------cCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHh-hh-hccc-CCCC-CeEEEEeCCCeEEEEEec
Confidence            99999888      5544444432221        1111100000222 11 1111 1112 257799999999999998


Q ss_pred             CCCCeEEEEeeeecccc
Q psy9709         172 ALTQEEVVSHSMDISTI  188 (500)
Q Consensus       172 ~~~G~vi~~~~~~~~~~  188 (500)
                      .  +++....+.+...+
T Consensus       156 ~--~~~~~~~S~~lG~v  170 (513)
T PRK10854        156 N--FEPILVESRRMGCV  170 (513)
T ss_pred             C--CCeeEeEEEeccee
Confidence            3  77666666665543

>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]

Probab=96.28  E-value=0.014  Score=56.61  Aligned_cols=70  Identities=14%  Similarity=0.236  Sum_probs=51.6

Q ss_pred             ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEECh-HHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709         150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDP-MEILQAVQTTMDRAIEKLSAHGLSRDDIV  228 (500)
Q Consensus       150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~-~~~~~~i~~~l~~~~~~~~~~~~~~~~I~  228 (500)
                      +++.|+||||-|+|++|+.+.|. +|+++......       +-....++ +.-+..+.+++.+++.+   ++.++++|.
T Consensus         2 ~~~~~~lGVDGGGTkt~a~l~~~-~g~vlg~g~sG-------pAN~~~~~~e~A~~ni~~ai~~A~~~---aG~~~~~i~   70 (301)
T COG2971           2 EPMPYFLGVDGGGTKTRAVLADE-DGNVLGRGKSG-------PANIQLVGKEEAVRNIKDAIREALDE---AGLKPDEIA   70 (301)
T ss_pred             CCccEEEEEccCCcceEEEEEcC-CCcEEEEeccC-------CceecccchHHHHHHHHHHHHHHHHh---cCCCHHHhC
Confidence            46779999999999999999996 49999876332       11123445 77888888888888765   466677664


Q ss_pred             EE
Q psy9709         229 TL  230 (500)
Q Consensus       229 ~I  230 (500)
                      .+
T Consensus        71 ~~   72 (301)
T COG2971          71 AI   72 (301)
T ss_pred             ce
Confidence            43

>PRK00292 glk glucokinase; Provisional

Probab=96.25  E-value=0.012  Score=59.08  Aligned_cols=80  Identities=15%  Similarity=0.060  Sum_probs=48.9

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      +++++||||+|++|++++|.+.++++...+.+++           +.+    .+.+.+.+++++.  .   ..++.+|||
T Consensus         2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~-----------~~~----~~~~~l~~~l~~~--~---~~~~~gigI   61 (316)
T PRK00292          2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATA-----------DYP----SLEDAIRAYLADE--H---GVQVRSACF   61 (316)
T ss_pred             ceEEEEEcCccceEEEEEecCCCceeeeEEEecC-----------CCC----CHHHHHHHHHHhc--c---CCCCceEEE
Confidence            3689999999999999999543555655544432           111    1344444444320  1   125788888


Q ss_pred             cCCCceeEEEeCCCCcccccceeecc
Q psy9709         233 TNQRETTVVWDLNTGEPLYNAIVWSD  258 (500)
Q Consensus       233 s~~~~~~v~~d~~~G~~l~~~i~w~D  258 (500)
                      +.++    ++|. + +...+.+.|.+
T Consensus        62 g~pG----~vd~-~-~i~~~n~~w~~   81 (316)
T PRK00292         62 AIAG----PVDG-D-EVRMTNHHWAF   81 (316)
T ss_pred             EEeC----cccC-C-EEEecCCCccc
Confidence            8877    7786 2 34444556864

>PRK12408 glucokinase; Provisional

Probab=96.15  E-value=0.0085  Score=60.58  Aligned_cols=77  Identities=14%  Similarity=0.201  Sum_probs=46.0

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeE------EEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEE------VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD  226 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~v------i~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~  226 (500)
                      ..+|++|||+|++|.+++|.+ |++      +...+.+++           +.    +.+.+.+++++++       ..+
T Consensus        16 ~~~L~~DIGGT~i~~al~d~~-g~~~~~~~~~~~~~~~t~-----------~~----~~~~~~i~~~~~~-------~~~   72 (336)
T PRK12408         16 ESFVAADVGGTHVRVALVCAS-PDAAKPVELLDYRTYRCA-----------DY----PSLAAILADFLAE-------CAP   72 (336)
T ss_pred             ccEEEEEcChhhhheeEEecc-CCccccccccceeEecCC-----------Cc----cCHHHHHHHHHhc-------CCC
Confidence            347999999999999999964 663      333222221           11    1133344444432       124


Q ss_pred             eeEEEEcCCCceeEEEeCCCCcccccceeec
Q psy9709         227 IVTLGITNQRETTVVWDLNTGEPLYNAIVWS  257 (500)
Q Consensus       227 I~~I~vs~~~~~~v~~d~~~G~~l~~~i~w~  257 (500)
                      +.+|+|+..+.   .++  +|....+.+.|.
T Consensus        73 ~~~igIg~pG~---~~~--~g~v~~~nl~w~   98 (336)
T PRK12408         73 VRRGVIASAGY---ALD--DGRVITANLPWT   98 (336)
T ss_pred             cCEEEEEecCC---ceE--CCEEEecCCCCc
Confidence            78889988873   144  477666666784

>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein

Probab=96.12  E-value=0.0083  Score=59.49  Aligned_cols=31  Identities=16%  Similarity=0.067  Sum_probs=26.0

Q ss_pred             EEecCCCcceEEEEeCCCCcEEEEEEeeeeee
Q psy9709          28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTI   59 (500)
Q Consensus        28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~   59 (500)
                      |+|||+-|+|++++|. +|+++...+.+.|..
T Consensus         2 G~DiGGA~~K~a~~~~-~g~~~~v~~~~~plW   32 (318)
T TIGR03123         2 GIDIGGANTKAAELDE-DGRIKEVHQLYCPLW   32 (318)
T ss_pred             ccccccceeeeEEecC-CCceeEEEEecCccc
Confidence            6999999999999997 898887776666644

This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.

>PRK05082 N-acetylmannosamine kinase; Provisional

Probab=96.11  E-value=0.019  Score=56.81  Aligned_cols=63  Identities=13%  Similarity=0.157  Sum_probs=46.5

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++|||+|.|+++++++|. +|+++.+.+.+++.        ..+++++.+.+.+.++++..          ++.+|||+.
T Consensus         3 ~lgvdig~~~i~~~l~dl-~g~i~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~----------~~~~igi~~   63 (291)
T PRK05082          3 TLAIDIGGTKIAAALVGE-DGQIRQRRQIPTPA--------SQTPEALRQALSALVSPLQA----------QADRVAVAS   63 (291)
T ss_pred             EEEEEECCCEEEEEEEcC-CCcEEEEEEecCCC--------CCCHHHHHHHHHHHHHHhhh----------cCcEEEEeC
Confidence            466999999999999998 99999877665541        23567777777777766532          356788887


Q ss_pred             Cc
Q psy9709         106 QR  107 (500)
Q Consensus       106 ~~  107 (500)
                      .+
T Consensus        64 pG   65 (291)
T PRK05082         64 TG   65 (291)
T ss_pred             cc
Confidence            66

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=96.05  E-value=0.0066  Score=66.89  Aligned_cols=65  Identities=12%  Similarity=0.096  Sum_probs=44.3

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++|+|||+|++|++++|. +|+++...+.+++.               ++.+.+.+++++++   .+.  .++.+|||+.
T Consensus        20 ~L~iDIGGT~ir~al~~~-~g~i~~~~~~~t~~---------------~~~~~~~i~~~l~~---~~~--~~~~~igig~   78 (638)
T PRK14101         20 RLLADVGGTNARFALETG-PGEITQIRVYPGAD---------------YPTLTDAIRKYLKD---VKI--GRVNHAAIAI   78 (638)
T ss_pred             EEEEEcCchhheeeeecC-CCcccceeEEecCC---------------CCCHHHHHHHHHHh---cCC--CCcceEEEEE
Confidence            566999999999999997 89987776554421               13455666666654   332  3577777776


Q ss_pred             CcceeEEeeC
Q psy9709         106 QRETTVVWDL  115 (500)
Q Consensus       106 ~~~~~v~~d~  115 (500)
                      -+    ++|.
T Consensus        79 pG----pVd~   84 (638)
T PRK14101         79 AN----PVDG   84 (638)
T ss_pred             ec----CccC
Confidence            55    5565

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=96.01  E-value=0.17  Score=49.43  Aligned_cols=58  Identities=17%  Similarity=0.199  Sum_probs=38.1

Q ss_pred             CcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHH
Q psy9709          23 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA   84 (500)
Q Consensus        23 ~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~   84 (500)
                      ..++++||+||+++|+++.+. ++++++....+-...  ..| .-.|.+...+.+..+++.+
T Consensus        23 ~~~~~~iDiGSssi~~vv~~~-~~~~~~~~~~~~~~v--r~G-~i~di~~a~~~i~~~~~~a   80 (267)
T PRK15080         23 SPLKVGVDLGTANIVLAVLDE-DGQPVAGALEWADVV--RDG-IVVDFIGAVTIVRRLKATL   80 (267)
T ss_pred             CCEEEEEEccCceEEEEEEcC-CCCEEEEEecccccc--CCC-EEeeHHHHHHHHHHHHHHH
Confidence            357888999999999999987 787766665444322  233 3556665555555554443

>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P)

Probab=95.99  E-value=0.034  Score=51.95  Aligned_cols=73  Identities=21%  Similarity=0.343  Sum_probs=47.3

Q ss_pred             EEEEEecCCCcceEEEEeCCCCc-EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCC-CCCCeeEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQE-EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL-SRDDIVTLG  102 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~-~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~-~~~~i~~Ig  102 (500)
                      .+++||+|+||.|++++.. .|+ .+...+..|+.  |. ...+...+++++.+.+++.+.++.   .+. +.++..-+|
T Consensus        64 ~~LalDlGGTnlRv~~V~L-~g~~~~~~~~~~~~i--p~-~~~~~~~~~lFd~ia~~i~~f~~~---~~~~~~~~~l~lG  136 (206)
T PF00349_consen   64 DFLALDLGGTNLRVALVEL-SGNGKVEIEQEKYKI--PE-ELMNGSGEELFDFIADCIAEFLKE---HNLESRDEKLPLG  136 (206)
T ss_dssp             EEEEEEESSSSEEEEEEEE-ESSSEEEEEEEEEE----H-HHHTSBHHHHHHHHHHHHHHHHHH---TTTTSTTSEEEEE
T ss_pred             eEEEEeecCcEEEEEEEEE-cCCCCceeeeccccC--Ch-HHhcCCcccHHHHHHHHHHHHHHH---hcccccccccceE
Confidence            3566999999999999997 565 34333444431  11 112344589999999999999887   433 234444555


Q ss_pred             Ec
Q psy9709         103 IT  104 (500)
Q Consensus       103 is  104 (500)
                      ++
T Consensus       137 fT  138 (206)
T PF00349_consen  137 FT  138 (206)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....

>PRK00292 glk glucokinase; Provisional

Probab=95.95  E-value=0.015  Score=58.20  Aligned_cols=79  Identities=14%  Similarity=0.026  Sum_probs=45.8

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++++|+|+|++|++++|...++++.+.+.+++           +    ++.+.+.+.+++++.  .   ..++.+|||+
T Consensus         3 ~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~-----------~----~~~~~~~l~~~l~~~--~---~~~~~gigIg   62 (316)
T PRK00292          3 PALVGDIGGTNARFALCDWANGEIEQIKTYATA-----------D----YPSLEDAIRAYLADE--H---GVQVRSACFA   62 (316)
T ss_pred             eEEEEEcCccceEEEEEecCCCceeeeEEEecC-----------C----CCCHHHHHHHHHHhc--c---CCCCceEEEE
Confidence            467799999999999999414555665554432           1    112444555554320  1   1257788888


Q ss_pred             CCcceeEEeeCCCCCccccccccCC
Q psy9709         105 NQRETTVVWDLNTGEPLYNAIDKMP  129 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p~i~w~d  129 (500)
                      .-+    ++|.+  +...+.+.|..
T Consensus        63 ~pG----~vd~~--~i~~~n~~w~~   81 (316)
T PRK00292         63 IAG----PVDGD--EVRMTNHHWAF   81 (316)
T ss_pred             EeC----cccCC--EEEecCCCccc
Confidence            665    55662  23233334753

>TIGR03706 exo_poly_only exopolyphosphatase

Probab=95.76  E-value=0.043  Score=54.53  Aligned_cols=148  Identities=12%  Similarity=0.131  Sum_probs=80.1

Q ss_pred             EEEEecCCCcceEEEEeCCCC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          26 IGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      +++||+|+.++|..+++..++  +++...+.++..-..-...-..+++ -.+.+.+++++..+.+++.+  .+++.+++-
T Consensus         2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e-~i~~~~~~l~~f~~~~~~~~--v~~i~~vaT   78 (300)
T TIGR03706         2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEE-AIERALEALKRFAELLRGFP--VDEVRAVAT   78 (300)
T ss_pred             eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHH-HHHHHHHHHHHHHHHHHhCC--CCeEEEEEc
Confidence            467999999999999996223  3444444433321110000122333 44455566666655543344  468999999


Q ss_pred             cCCcceeEEeeCCCCCccccccc--------cCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCCC
Q psy9709         104 TNQRETTVVWDLNTGEPLYNAID--------KMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQ  175 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~p~i~--------w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G  175 (500)
                      ++.|.      +++++-+-..+-        |.+..-   -+|+........... .. .+.+|+|+.|+...+++.  +
T Consensus        79 sa~R~------A~N~~~~~~~i~~~tgi~i~visg~e---Ea~l~~~gv~~~~~~-~~-~~v~DiGGGSte~~~~~~--~  145 (300)
T TIGR03706        79 AALRD------AKNGPEFLREAEAILGLPIEVISGEE---EARLIYLGVAHTLPI-AD-GLVVDIGGGSTELILGKD--F  145 (300)
T ss_pred             HHHHc------CCCHHHHHHHHHHHHCCCeEEeChHH---HHHHHHHHHHhCCCC-CC-cEEEEecCCeEEEEEecC--C
Confidence            99884      324444433321        111110   012200000000011 11 377999999999999983  7


Q ss_pred             eEEEEeeeeccccc
Q psy9709         176 EEVVSHSMDISTIS  189 (500)
Q Consensus       176 ~vi~~~~~~~~~~~  189 (500)
                      +++...+.++..+.
T Consensus       146 ~~~~~~Sl~lG~vr  159 (300)
T TIGR03706       146 EPGEGVSLPLGCVR  159 (300)
T ss_pred             CEeEEEEEccceEE
Confidence            78777777766543

It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.

>PRK13321 pantothenate kinase; Reviewed

Probab=95.72  E-value=0.028  Score=54.51  Aligned_cols=63  Identities=17%  Similarity=0.282  Sum_probs=41.6

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  234 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~  234 (500)
                      +|+||+|.|++|.++|| + ++++...+.+++.        ..+++++...+...+++.       +.+.++|.+|++++
T Consensus         2 iL~IDIGnT~ik~gl~~-~-~~i~~~~~~~T~~--------~~~~~~~~~~l~~l~~~~-------~~~~~~i~~i~vss   64 (256)
T PRK13321          2 LLLIDVGNTNIKLGVFD-G-DRLLRSFRLPTDK--------SRTSDELGILLLSLFRHA-------GLDPEDIRAVVISS   64 (256)
T ss_pred             EEEEEECCCeEEEEEEE-C-CEEEEEEEEecCC--------CCCHHHHHHHHHHHHHHc-------CCChhhCCeEEEEe
Confidence            58999999999999999 4 5777655554431        234456665555544332       33445788888875

>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis

Probab=95.68  E-value=0.019  Score=56.13  Aligned_cols=67  Identities=18%  Similarity=0.242  Sum_probs=46.4

Q ss_pred             EEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         156 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      ||||.|+|++|++++|.+ |+++......-.      .....+.++..+.+.+++++++++.   +.+..+|..+.+
T Consensus         1 lGIDgGgTkt~~vl~d~~-g~il~~~~~~~~------n~~~~~~~~~~~~i~~~i~~~~~~~---~~~~~~i~~~~~   67 (271)
T PF01869_consen    1 LGIDGGGTKTKAVLVDEN-GNILGRGKGGGA------NYNSVGFEEAMENIKEAIEEALSQA---GLSPDDIAAICI   67 (271)
T ss_dssp             EEEEECSSEEEEEEEETT-SEEEEEEEES-T------THHHHHHHHHHHHHHHHHHHHHHHH---TTSTTCCCEEEE
T ss_pred             CEEeeChheeeeEEEeCC-CCEEEEEEeCCC------CCCCCCcchhhhHHHHHHHHHHHHc---CCCccccceeee
Confidence            699999999999999985 998866533211      1112345677778888888888764   455566666643

The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=95.61  E-value=0.079  Score=55.31  Aligned_cols=80  Identities=18%  Similarity=0.160  Sum_probs=53.2

Q ss_pred             cccCcEEEEEecCCCcceEEEEeC-CCC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy9709          20 QTQVPLIGVIDEGTRTVRFAIISA-LTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD   96 (500)
Q Consensus        20 ~m~~~~i~giDiGtt~~k~~v~d~-~~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~   96 (500)
                      ||.+.+++|||+||+++|+++.+. .+|  ++++....+..-.  ..| .-.|.+..-+++.++++++-+.   ++.+..
T Consensus         4 ~~~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~gi--~~G-~I~d~~~~~~aI~~av~~ae~~---~g~~i~   77 (420)
T PRK09472          4 ATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGM--DKG-GVNDLESVVKCVQRAIDQAELM---ADCQIS   77 (420)
T ss_pred             ccCCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCCCc--cCC-EEEcHHHHHHHHHHHHHHHHHH---hCCccc
Confidence            355578888999999999987652 144  5566655542211  123 5678898888888888887655   666555


Q ss_pred             CeeEEEEcCC
Q psy9709          97 DIVTLGITNQ  106 (500)
Q Consensus        97 ~i~~Igis~~  106 (500)
                      + +.+|+++.
T Consensus        78 ~-v~v~i~g~   86 (420)
T PRK09472         78 S-VYLALSGK   86 (420)
T ss_pred             E-EEEEecCc
Confidence            4 33677764

>PRK13318 pantothenate kinase; Reviewed

Probab=95.55  E-value=0.04  Score=53.47  Aligned_cols=63  Identities=17%  Similarity=0.221  Sum_probs=41.1

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  234 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~  234 (500)
                      +|+||+|.|++|.+++| + |+++...+.+++.        ...++++.+    .++++++.   .+.+..++.+|++++
T Consensus         2 iL~IDIGnT~iK~al~d-~-g~i~~~~~~~t~~--------~~~~~~~~~----~l~~l~~~---~~~~~~~i~~I~iss   64 (258)
T PRK13318          2 LLAIDVGNTNTVFGLYE-G-GKLVAHWRISTDS--------RRTADEYGV----WLKQLLGL---SGLDPEDITGIIISS   64 (258)
T ss_pred             EEEEEECCCcEEEEEEE-C-CEEEEEEEEeCCC--------CCCHHHHHH----HHHHHHHH---cCCCcccCceEEEEE
Confidence            58999999999999999 5 8888766555431        123344443    34444433   234445688889875

>TIGR02707 butyr_kinase butyrate kinase

Probab=95.35  E-value=0.06  Score=54.59  Aligned_cols=66  Identities=14%  Similarity=0.188  Sum_probs=42.3

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHH---HHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQ---TTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~---~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      |++|..|+||+|++|||. +++++.+........   .    -+++.+.+.+.   +.+.+.+++   .++...+|.+|+
T Consensus         2 il~in~Gsts~k~alf~~-~~~~~~~~~~~~~~~---~----~~~~~~~~q~~~r~~~i~~~l~~---~~~~~~~i~av~   70 (351)
T TIGR02707         2 ILVINPGSTSTKLAVFED-ERPLFEETLRHSVEE---L----GRFKNVIDQFEFRKQVILQFLEE---HGISISKLDAVV   70 (351)
T ss_pred             EEEEecCchhheEEEEeC-CCceeeeeecCCHHH---h----cccccHHHHHHHHHHHHHHHHHH---cCCCcccccEEE
Confidence            577999999999999998 888776544333111   1    12333444444   444444444   777677888883

This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.

>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family

Probab=95.20  E-value=0.046  Score=49.71  Aligned_cols=73  Identities=15%  Similarity=0.192  Sum_probs=52.9

Q ss_pred             EEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCC
Q psy9709         156 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ  235 (500)
Q Consensus       156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~~  235 (500)
                      +|||+|+|.+-++++|.+ ..++...+.++.            +++....+.+++++++++   .++++++|..|.+++.
T Consensus         2 igIDvGGT~TD~v~~d~~-~~~~~~~K~~Tt------------~~d~~~gi~~al~~l~~~---~~~~~~~i~~v~~gTT   65 (176)
T PF05378_consen    2 IGIDVGGTFTDAVLLDED-TGVVATAKVPTT------------PDDPAEGILEALDALLEE---SGIDPSDIDRVRHGTT   65 (176)
T ss_pred             eeEecCCCcEEEEEEeCC-CCEEEEEEeCCC------------CcCHHHHHHHHHHhhhcc---cCCChhhCcEEEeccH
Confidence            699999999999999975 477777766553            345566777777777764   3556778888888776


Q ss_pred             CceeEEEeC
Q psy9709         236 RETTVVWDL  244 (500)
Q Consensus       236 ~~~~v~~d~  244 (500)
                      ..+=.++-.
T Consensus        66 ~~tNAl~e~   74 (176)
T PF05378_consen   66 VATNALLER   74 (176)
T ss_pred             HHHHHHHhc
Confidence            555445544

>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.06  E-value=0.18  Score=53.19  Aligned_cols=150  Identities=12%  Similarity=0.134  Sum_probs=77.3

Q ss_pred             EEEEEecCCCcceEEEEeCCC-C--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALT-Q--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~-g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      .+++||+||-|+|.+|++. . |  +++...+.....-..-+-.-.-+++ -.+...+|++...+.+  .+...++|.+|
T Consensus         4 ~~A~IDiGSNS~rlvV~~~-~~~~~~~l~~~k~~vrLgegl~~~g~L~~e-ai~R~~~aL~~f~e~~--~~~~~~~v~~v   79 (492)
T COG0248           4 RVAAIDLGSNSFRLVVAEI-TPGSFQVLFREKRIVRLGEGLDATGNLSEE-AIERALSALKRFAELL--DGFGAEEVRVV   79 (492)
T ss_pred             eEEEEEecCCeEEEEEEec-cCCccchhhhhhhheehhcCccccCCcCHH-HHHHHHHHHHHHHHHH--hhCCCCEEEEe
Confidence            5778999999999999996 3 3  4444333222211111111122333 4445566666665554  33456789999


Q ss_pred             EEcCCcceeEEeeCCCCCccc----cccccCCccccCCC-CCCCCCCC-CccccccCCEEEEEeccCCCceEEEEeCCCC
Q psy9709         102 GITNQRETTVVWDLNTGEPLY----NAIDKMPSLVYNTP-PEPSSNTN-NNSIQTQVPLIGVIDEGTRTVRFAIISALTQ  175 (500)
Q Consensus       102 gis~~~~~~v~~d~~~g~pl~----p~i~w~d~~~~~~t-~~~~~~~~-n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G  175 (500)
                      +-++.|      |+.|++-+-    ..+-+.-+-.-.+. +|++-.-. |. ... ..-.+.+|||+.|+-.++.+.  .
T Consensus        80 ATsA~R------~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~-~~~-~~~~lv~DIGGGStEl~~g~~--~  149 (492)
T COG0248          80 ATSALR------DAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVAST-LPR-KGDGLVIDIGGGSTELVLGDN--F  149 (492)
T ss_pred             hhHHHH------cCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhc-CCC-CCCEEEEEecCCeEEEEEecC--C
Confidence            988887      443222110    00011101100000 11100000 10 111 233678999999999999983  5


Q ss_pred             eEEEEeeeecccc
Q psy9709         176 EEVVSHSMDISTI  188 (500)
Q Consensus       176 ~vi~~~~~~~~~~  188 (500)
                      ++....+.+...+
T Consensus       150 ~~~~~~Sl~~G~v  162 (492)
T COG0248         150 EIGLLISLPLGCV  162 (492)
T ss_pred             ccceeEEeecceE
Confidence            6666666666543

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=95.02  E-value=0.029  Score=61.87  Aligned_cols=79  Identities=13%  Similarity=0.112  Sum_probs=50.2

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      +..+||+|||+|++|++++|.+ |+++...+.+++.      +         +.+...+++++++.   +.  .++.+||
T Consensus        17 ~~~~L~iDIGGT~ir~al~~~~-g~i~~~~~~~t~~------~---------~~~~~~i~~~l~~~---~~--~~~~~ig   75 (638)
T PRK14101         17 DGPRLLADVGGTNARFALETGP-GEITQIRVYPGAD------Y---------PTLTDAIRKYLKDV---KI--GRVNHAA   75 (638)
T ss_pred             CCCEEEEEcCchhheeeeecCC-CcccceeEEecCC------C---------CCHHHHHHHHHHhc---CC--CCcceEE
Confidence            3448999999999999999975 8887665554421      1         22445555555431   21  3578888


Q ss_pred             EcCCCceeEEEeCCCCcccccceeec
Q psy9709         232 ITNQRETTVVWDLNTGEPLYNAIVWS  257 (500)
Q Consensus       232 vs~~~~~~v~~d~~~G~~l~~~i~w~  257 (500)
                      |+.+|    ++|. + ....+.+.|.
T Consensus        76 ig~pG----pVd~-~-~~~~~nl~w~   95 (638)
T PRK14101         76 IAIAN----PVDG-D-QVRMTNHDWS   95 (638)
T ss_pred             EEEec----CccC-C-eeeecCCCcE
Confidence            88777    7776 2 2333445675

>smart00842 FtsA Cell division protein FtsA

Probab=94.89  E-value=0.17  Score=46.50  Aligned_cols=74  Identities=16%  Similarity=0.196  Sum_probs=48.3

Q ss_pred             EEEecCCCcceEEEEeCC-CC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          27 GVIDEGTRTVRFAIISAL-TQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        27 ~giDiGtt~~k~~v~d~~-~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .|||+||+++|+++.... +|  ++++....+..-  -..| .-.|.+..-+++.++++++-+.   .+.+.++ +.+++
T Consensus         2 ~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~g--i~~G-~I~d~~~~~~~I~~ai~~ae~~---~~~~i~~-V~v~i   74 (187)
T smart00842        2 VGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSRG--IRKG-VIVDIEAAARAIREAVEEAERM---AGVKIDS-VYVGI   74 (187)
T ss_pred             EEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCC--ccCc-EEECHHHHHHHHHHHHHHHHHH---hCCcccE-EEEEE
Confidence            469999999999998642 34  555555443221  1223 5668888888888888888665   5654433 45666


Q ss_pred             cCCc
Q psy9709         104 TNQR  107 (500)
Q Consensus       104 s~~~  107 (500)
                      ++..
T Consensus        75 ~g~~   78 (187)
T smart00842       75 SGRH   78 (187)
T ss_pred             cCCc
Confidence            6654

FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=94.82  E-value=0.12  Score=51.64  Aligned_cols=72  Identities=24%  Similarity=0.347  Sum_probs=46.5

Q ss_pred             ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709         150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT  229 (500)
Q Consensus       150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~  229 (500)
                      +...++||||.|+|++|+++++.  ++++...-...     ..|.    |.     ...+++++.+++   +.+..+|.+
T Consensus       132 ~~~~~~LGID~GSTtTK~VLm~d--~~~I~~~~~~~-----t~g~----p~-----~~~~l~~~le~l---~~~~~~I~~  192 (396)
T COG1924         132 YQGMYTLGIDSGSTTTKAVLMED--GKEILYGFYVS-----TKGR----PI-----AEKALKEALEEL---GEKLEEILG  192 (396)
T ss_pred             hcCcEEEEEecCCcceeEEEEeC--CCeEEEEEEEc-----CCCC----hh-----HHHHHHHHHHHc---ccChheeee
Confidence            44668999999999999999994  55554332221     1221    11     244555555543   445578999


Q ss_pred             EEEcCCCceeE
Q psy9709         230 LGITNQRETTV  240 (500)
Q Consensus       230 I~vs~~~~~~v  240 (500)
                      +++++.|...+
T Consensus       193 ~~~TGYGR~~v  203 (396)
T COG1924         193 LGVTGYGRNLV  203 (396)
T ss_pred             eeeecccHHHh
Confidence            99999875544

>smart00842 FtsA Cell division protein FtsA

Probab=94.27  E-value=0.36  Score=44.32  Aligned_cols=74  Identities=16%  Similarity=0.216  Sum_probs=45.5

Q ss_pred             EEEEeccCCCceEEEEeCC-CC--eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         155 IGVIDEGTRTVRFAIISAL-TQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~-~G--~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      +.||||||+++|+++.... +|  ++++....+..  .-+.| ...|.+..-+++.++++++-++   .+.+.+.+ .++
T Consensus         1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~--gi~~G-~I~d~~~~~~~I~~ai~~ae~~---~~~~i~~V-~v~   73 (187)
T smart00842        1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSR--GIRKG-VIVDIEAAARAIREAVEEAERM---AGVKIDSV-YVG   73 (187)
T ss_pred             CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC--CccCc-EEECHHHHHHHHHHHHHHHHHH---hCCcccEE-EEE
Confidence            3689999999999998643 24  55555544321  12334 4678888877777777776544   24433333 455


Q ss_pred             EcCC
Q psy9709         232 ITNQ  235 (500)
Q Consensus       232 vs~~  235 (500)
                      +++.
T Consensus        74 i~g~   77 (187)
T smart00842       74 ISGR   77 (187)
T ss_pred             EcCC
Confidence            5544

FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.

>TIGR00749 glk glucokinase, proteobacterial type

Probab=94.14  E-value=0.075  Score=53.22  Aligned_cols=62  Identities=16%  Similarity=0.168  Sum_probs=37.3

Q ss_pred             EEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCC---CCeeEEEEc
Q psy9709          28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR---DDIVTLGIT  104 (500)
Q Consensus        28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~---~~i~~Igis  104 (500)
                      ++|||+|++|++++|. +|+++.+..  +.   +.     .+    ++.+.+.+++++++   .+.+.   -...+||+.
T Consensus         2 ~~DIGGT~i~~glvd~-~g~~l~~~~--~~---~~-----~~----~~~l~~~i~~~l~~---~~~~~~~~~~~~~Igi~   63 (316)
T TIGR00749         2 VGDIGGTNARLALCEI-APGEISQAK--TY---SG-----LD----FPSLEAVVRVYLEE---HKVELKDPIAKGCFAIA   63 (316)
T ss_pred             eEecCcceeeEEEEec-CCCceeeeE--EE---ec-----CC----CCCHHHHHHHHHHh---cccccCCCcCeEEEEEe
Confidence            5999999999999997 777665432  21   11     11    24455566665544   22111   235788888


Q ss_pred             CCc
Q psy9709         105 NQR  107 (500)
Q Consensus       105 ~~~  107 (500)
                      +..
T Consensus        64 Gpv   66 (316)
T TIGR00749        64 CPI   66 (316)
T ss_pred             Ccc
Confidence            653

This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.

>KOG1794|consensus

Probab=93.91  E-value=0.29  Score=47.20  Aligned_cols=92  Identities=12%  Similarity=0.130  Sum_probs=69.1

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCC-eeEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD-IVTLG  102 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~-i~~Ig  102 (500)
                      .+++||+=|.|..|++++|+ +++++++.........      -.+-+..-+.+.+.++++.++   ++.++.. +.++|
T Consensus         3 ~~y~GvEGgaT~s~~Vivd~-~~~~~~~a~~~~Tnh~------~ig~~~~~~rie~~i~~A~~k---~g~d~~~~lr~lg   72 (336)
T KOG1794|consen    3 DFYGGVEGGATCSRLVIVDE-DGTILGRAVGGGTNHW------LIGSTTCASRIEDMIREAKEK---AGWDKKGPLRSLG   72 (336)
T ss_pred             ceeEeecCCcceeEEEEECC-CCCEeeEeeccccccc------cCCchHHHHHHHHHHHHHHhh---cCCCccCccceee
Confidence            46788999999999999998 9999998875544222      234566788888888888887   8998887 77777


Q ss_pred             EcCCcceeEEeeCCCCCccccccccCCccc
Q psy9709         103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLV  132 (500)
Q Consensus       103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~  132 (500)
                      ++--+     .|.  +.-.+..+.|...++
T Consensus        73 L~lSg-----~d~--e~~~~~lv~~~R~~f   95 (336)
T KOG1794|consen   73 LGLSG-----TDQ--EDKNRKLVTEFRDKF   95 (336)
T ss_pred             eeccc-----CCc--hhHHHHHHHHHHHhc
Confidence            76433     233  566777788876665

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=93.86  E-value=0.13  Score=52.01  Aligned_cols=73  Identities=21%  Similarity=0.274  Sum_probs=45.9

Q ss_pred             hhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEE------cCCCCCCHHHHH
Q psy9709         409 GSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVIC------GMTQFTTKGHII  482 (500)
Q Consensus       409 g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~------Gl~~~~~~~~l~  482 (500)
                      -|...+|..++-..+.|+.  +.+++.+++.+...       |.        .-....++|-      =+..+.+++|++
T Consensus       298 KCAAGTGrFLE~mA~~Lgi--~leEl~~lA~~a~~-------pv--------~ISS~CtVFAESEVIslla~G~~reDIa  360 (432)
T TIGR02259       298 RCAAGCGRYLGYIADEMNM--GLHELGPLAMKSSK-------PA--------RINSTCTVFAGAELRDRLALGDKREDIL  360 (432)
T ss_pred             cccccchHHHHHHHHHcCC--CHHHHHHHHhcCCC-------CC--------CcCCcceEEehHHHHHHHHCCCCHHHHH
Confidence            3566778888888888865  56666666543211       10        0112233442      244567899999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy9709         483 RAALEAICFQTRDILE  498 (500)
Q Consensus       483 rAv~Egia~~~~~~~~  498 (500)
                      .+++.+|+-.+...+.
T Consensus       361 AGL~~SIA~Rv~s~l~  376 (432)
T TIGR02259       361 AGLHRAIILRAISIIS  376 (432)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999887776654

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>TIGR01174 ftsA cell division protein FtsA

Probab=93.46  E-value=0.43  Score=48.90  Aligned_cols=75  Identities=17%  Similarity=0.176  Sum_probs=49.1

Q ss_pred             EEEEecCCCcceEEEEeCC-CC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          26 IGVIDEGTRTVRFAIISAL-TQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~-~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      ++||||||+++|+++.... ++  ++++....|....  ..| .-.|++..-+++.++++++-+.   .+....+ +.++
T Consensus         2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~gi--~~G-~I~d~~~~~~~i~~al~~~e~~---~~~~i~~-v~~~   74 (371)
T TIGR01174         2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSRGI--KKG-VINDIEAAVGSIQRAIEAAELM---AGCEIRS-VIVS   74 (371)
T ss_pred             EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCc--cCc-EEEcHHHHHHHHHHHHHHHHHH---hCCcccE-EEEE
Confidence            5679999999999987631 34  4555555443311  223 5668888888888888887665   5655444 5577


Q ss_pred             EcCCc
Q psy9709         103 ITNQR  107 (500)
Q Consensus       103 is~~~  107 (500)
                      +++..
T Consensus        75 v~g~~   79 (371)
T TIGR01174        75 ISGAH   79 (371)
T ss_pred             Ecccc
Confidence            77643

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=93.38  E-value=0.094  Score=53.07  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=26.7

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeec
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDI  185 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~  185 (500)
                      +|++|||+|+|++|++++|.+ ++++.....++
T Consensus         2 ~y~lGIDIGSTsTKaVVmd~~-g~Il~~~i~pT   33 (432)
T TIGR02259         2 ECFVGIDLGSTTTKAVLMDDK-GEVIGRGITNS   33 (432)
T ss_pred             ceEEEEEcCchhEEEEEEcCC-CcEEEEEecCC
Confidence            589999999999999999964 67887765554

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>PLN02914 hexokinase

Probab=93.27  E-value=0.41  Score=50.54  Aligned_cols=59  Identities=14%  Similarity=0.204  Sum_probs=42.1

Q ss_pred             EEEEEecCCCcceEEEEeCCCCc---EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      .+++||+|+||.|+++++. .|+   ++...+..++.  | .....-..+++|+-+.+++++.++.
T Consensus        96 ~fLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~i--p-~~l~~gt~~eLFdfIA~~i~~fl~~  157 (490)
T PLN02914         96 LFYALDLGGTNFRVLRVQL-GGKDERVIATEFEQVSI--P-QELMFGTSEELFDFIASGLANFVAK  157 (490)
T ss_pred             EEEEEecCCceEEEEEEEe-cCCCCceeeeeEEEecC--C-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence            3455999999999999997 663   44444444432  1 1223446789999999999999976

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=93.27  E-value=0.74  Score=48.07  Aligned_cols=78  Identities=15%  Similarity=0.139  Sum_probs=48.2

Q ss_pred             cCCEEEEEeccCCCceEEEEeC-CCC--eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISA-LTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI  227 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~-~~G--~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I  227 (500)
                      .++++.||||||+++|+++... .+|  ++++....+..  --+.| ...|.+..-+++.++++++-+.   ++.+.+.+
T Consensus         6 ~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~--gi~~G-~I~d~~~~~~aI~~av~~ae~~---~g~~i~~v   79 (420)
T PRK09472          6 DRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR--GMDKG-GVNDLESVVKCVQRAIDQAELM---ADCQISSV   79 (420)
T ss_pred             CCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCC--CccCC-EEEcHHHHHHHHHHHHHHHHHH---hCCcccEE
Confidence            3468999999999999987652 234  55565555421  11233 4678888777777777766433   34444443


Q ss_pred             eEEEEcCC
Q psy9709         228 VTLGITNQ  235 (500)
Q Consensus       228 ~~I~vs~~  235 (500)
                       .+++++.
T Consensus        80 -~v~i~g~   86 (420)
T PRK09472         80 -YLALSGK   86 (420)
T ss_pred             -EEEecCc
Confidence             3555543

>PF13941 MutL: MutL protein

Probab=93.19  E-value=0.33  Score=50.68  Aligned_cols=52  Identities=12%  Similarity=0.226  Sum_probs=40.9

Q ss_pred             EEEEecCCCcceEEEEe--CCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          26 IGVIDEGTRTVRFAIIS--ALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d--~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      ++.+|+|+|.+|+.+||  ..+.+++++++.++..        +  +.++...+.++++++.+.
T Consensus         2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv--------~--~~Dv~~G~~~A~~~l~~~   55 (457)
T PF13941_consen    2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTV--------E--PGDVTIGLNNALEQLEEQ   55 (457)
T ss_pred             EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCc--------C--cccHHHHHHHHHHHHHHh
Confidence            34599999999999999  4478999998887762        1  245777888888888766

>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P)

Probab=93.10  E-value=0.23  Score=46.41  Aligned_cols=60  Identities=12%  Similarity=0.176  Sum_probs=40.0

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK  216 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~  216 (500)
                      .+|+||+|+|+.|++++.......+...+..++.  |. .......+++++.+.+|+.+.+++
T Consensus        64 ~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~i--p~-~~~~~~~~~lFd~ia~~i~~f~~~  123 (206)
T PF00349_consen   64 DFLALDLGGTNLRVALVELSGNGKVEIEQEKYKI--PE-ELMNGSGEELFDFIADCIAEFLKE  123 (206)
T ss_dssp             EEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE----H-HHHTSBHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeecCcEEEEEEEEEcCCCCceeeeccccC--Ch-HHhcCCcccHHHHHHHHHHHHHHH
Confidence            4799999999999999998623334333333331  10 001223488999999999999876

The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....

>PTZ00288 glucokinase 1; Provisional

Probab=92.98  E-value=0.55  Score=48.49  Aligned_cols=89  Identities=12%  Similarity=0.081  Sum_probs=51.5

Q ss_pred             cEEEEEecCCCcceEEEEeC--CCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISA--LTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~--~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      .|++++|||+||+|+++|+.  .++..+...+..++..       ..|..+..+.+.+.++++.+.+  ..+..-.-.+|
T Consensus        26 ~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~i   96 (405)
T PTZ00288         26 PIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNVT-------KTDIRELLEFFDEVLQKLKKNL--SFIQRVAAGAI   96 (405)
T ss_pred             CeEEEEEecCCceEEEEEeccCCCCCceeEEEEecccc-------cccHHHHHHHHHHHHHHHHhcC--ccccCcCeEEE
Confidence            57888999999999999985  1222333334443311       1366777878777777776541  11222334566


Q ss_pred             EEcCCcceeEEeeCCCCCccccccccCC
Q psy9709         102 GITNQRETTVVWDLNTGEPLYNAIDKMP  129 (500)
Q Consensus       102 gis~~~~~~v~~d~~~g~pl~p~i~w~d  129 (500)
                      +|.+      |++.  |+.-.|.-.|..
T Consensus        97 AvAG------PV~~--~~~~~~~~~~~~  116 (405)
T PTZ00288         97 SVPG------PVTG--GQLAGPFNNLKG  116 (405)
T ss_pred             EEeC------ceeC--CEeecccccccc
Confidence            6655      4433  444445555543

>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]

Probab=92.72  E-value=1.4  Score=40.38  Aligned_cols=29  Identities=17%  Similarity=0.129  Sum_probs=25.6

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHS   53 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~   53 (500)
                      ++.+|+|+||.++-..++|. +|+.++-+-
T Consensus        29 k~~vGVDLGT~~iV~~vlD~-d~~Pvag~~   57 (277)
T COG4820          29 KLWVGVDLGTCDIVSMVLDR-DGQPVAGCL   57 (277)
T ss_pred             ceEEEeecccceEEEEEEcC-CCCeEEEEe
Confidence            56777999999999999998 999998664

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=92.30  E-value=0.92  Score=44.22  Aligned_cols=57  Identities=18%  Similarity=0.157  Sum_probs=36.6

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHH
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD  211 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~  211 (500)
                      +.+++++|||||+++|+++.+.. ++.++....+-.  .-+.|. ..|.+.....+..+++
T Consensus        22 ~~~~~~~iDiGSssi~~vv~~~~-~~~~~~~~~~~~--~vr~G~-i~di~~a~~~i~~~~~   78 (267)
T PRK15080         22 ESPLKVGVDLGTANIVLAVLDED-GQPVAGALEWAD--VVRDGI-VVDFIGAVTIVRRLKA   78 (267)
T ss_pred             CCCEEEEEEccCceEEEEEEcCC-CCEEEEEecccc--ccCCCE-EeeHHHHHHHHHHHHH
Confidence            46789999999999999999864 766655544332  123444 5565554444444443

>PLN02596 hexokinase-like

Probab=92.27  E-value=0.61  Score=49.25  Aligned_cols=60  Identities=7%  Similarity=-0.023  Sum_probs=41.6

Q ss_pred             CcEEEEEecCCCcceEEEEeCCCCc---EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          23 VPLIGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        23 ~~~i~giDiGtt~~k~~v~d~~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      +.| ++||+|+||.|++.++. .|+   +....+..++.  | .....-..+++|+.+.+++.+.++.
T Consensus        96 G~y-LAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~I--p-~~l~~~t~~eLFd~IA~~i~~fl~~  158 (490)
T PLN02596         96 GLY-YGLNLRGSNFLLLRARL-GGKNEPISDLYREEISI--P-SNVLNGTSQELFDYIALELAKFVAE  158 (490)
T ss_pred             eEE-EEEeeCCceEEEEEEEE-cCCCCceEEEEEEEecC--C-hHhhcCCHHHHHHHHHHHHHHHHHh
Confidence            345 56999999999999998 664   23333333321  1 1223446789999999999999876

>PLN02362 hexokinase

Probab=91.86  E-value=0.86  Score=48.43  Aligned_cols=58  Identities=12%  Similarity=0.177  Sum_probs=39.7

Q ss_pred             EEEEecCCCcceEEEEeCCCCc---EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          26 IGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      +++||+|+||.|+++++. .|+   ++...+..++.  |.. -.....+++|+.+.+++.+.++.
T Consensus        97 fLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~I--p~~-l~~~~~~eLFd~IA~~i~~fl~~  157 (509)
T PLN02362         97 YYALDLGGTNFRVLRVQL-GGQRSSILSQDVERHPI--PQH-LMNSTSEVLFDFIASSLKQFVEK  157 (509)
T ss_pred             EEEEecCCceEEEEEEEe-cCCCcceeeceeEEEec--Chh-hccCCHHHHHHHHHHHHHHHHHh
Confidence            456999999999999998 663   22222223321  111 12346789999999999999876

>PF13941 MutL: MutL protein

Probab=91.69  E-value=0.59  Score=48.82  Aligned_cols=53  Identities=11%  Similarity=0.214  Sum_probs=40.8

Q ss_pred             EEEEeccCCCceEEEEe--CCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHH
Q psy9709         155 IGVIDEGTRTVRFAIIS--ALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL  217 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d--~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~  217 (500)
                      +|.+|||+|.+|+.+||  .++.++++..+.++..        +  +.++...+.+|++++.++.
T Consensus         2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv--------~--~~Dv~~G~~~A~~~l~~~~   56 (457)
T PF13941_consen    2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTV--------E--PGDVTIGLNNALEQLEEQT   56 (457)
T ss_pred             EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCc--------C--cccHHHHHHHHHHHHHHhc
Confidence            57899999999999999  5557888888777662        1  1467777788888877653

>PLN02405 hexokinase

Probab=91.52  E-value=0.88  Score=48.19  Aligned_cols=59  Identities=12%  Similarity=0.169  Sum_probs=42.3

Q ss_pred             EEEEEecCCCcceEEEEeCCCCc---EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      .+++||+|+||.|++.+.. .|+   ++...+..++.  | +....-..+++|+-+.+++++.+++
T Consensus        96 ~flAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~i--p-~~~~~gt~~~LFdfIA~~i~~fl~~  157 (497)
T PLN02405         96 LFYALDLGGTNFRVLRVLL-GGKDGRVVKQEFEEVSI--P-PHLMTGSSDALFDFIAAALAKFVAT  157 (497)
T ss_pred             eEEEEecCCceEEEEEEEE-cCCCCceeEEEEEEeec--C-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence            3455999999999999997 663   44444444432  1 1223446789999999999999876

>TIGR02707 butyr_kinase butyrate kinase

Probab=91.44  E-value=0.69  Score=46.94  Aligned_cols=68  Identities=15%  Similarity=0.226  Sum_probs=39.5

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeec-ccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDI-STISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~-~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      +|+|..|+||+|+++|+.+ ++++....... +..    +    +.+.+.+.+.-.++.+.+.+.+.++...+|.+|+
T Consensus         2 il~in~Gsts~k~alf~~~-~~~~~~~~~~~~~~~----~----~~~~~~~q~~~r~~~i~~~l~~~~~~~~~i~av~   70 (351)
T TIGR02707         2 ILVINPGSTSTKLAVFEDE-RPLFEETLRHSVEEL----G----RFKNVIDQFEFRKQVILQFLEEHGISISKLDAVV   70 (351)
T ss_pred             EEEEecCchhheEEEEeCC-CceeeeeecCCHHHh----c----ccccHHHHHHHHHHHHHHHHHHcCCCcccccEEE
Confidence            6899999999999999986 87775543332 111    1    2223333343122233333333566667788884

This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.

>PRK03011 butyrate kinase; Provisional

Probab=91.17  E-value=0.36  Score=49.12  Aligned_cols=69  Identities=14%  Similarity=0.286  Sum_probs=39.9

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      .|++|.-|+||+|.++|+.  .+.+......++...-..      -..+++.+.-..+.+.+.|++.++..++|.+|
T Consensus         3 ~il~inpgststk~a~~~~--~~~~~~~~~~h~~~~~~~------~~~~~~q~~~r~~~i~~~l~~~g~~~~~l~av   71 (358)
T PRK03011          3 RILVINPGSTSTKIAVFED--EKPIFEETLRHSAEELEK------FKTIIDQYEFRKQAILDFLKEHGIDLSELDAV   71 (358)
T ss_pred             EEEEEcCCCchheEEEEcC--CceeeeeccccCHHHHhc------CCCccchHHHHHHHHHHHHHHcCCChhcceEE
Confidence            4778999999999999984  566666665554221110      01122222222223333333377877888888

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=91.04  E-value=1.6  Score=45.28  Aligned_cols=74  Identities=18%  Similarity=0.122  Sum_probs=47.0

Q ss_pred             EEEEEecCCCcceEEEEeCCCC-c--EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQ-E--EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g-~--~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      ++.++|+||++++++|=-..++ +  +++..+.+..-.  .. ..-.|.+..-+++.++++++-..   ++++.++ +.+
T Consensus         7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~SrGi--k~-G~I~di~~~~~sI~~av~~AE~m---ag~~i~~-v~v   79 (418)
T COG0849           7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSRGI--KK-GVIVDLDAAAQSIKKAVEAAERM---AGCEIKS-VIV   79 (418)
T ss_pred             eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCccc--cc-ceEEcHHHHHHHHHHHHHHHHHh---cCCCcce-EEE
Confidence            7778999999999988765333 2  333323222211  12 35568898888888888888766   7765543 344


Q ss_pred             EEcC
Q psy9709         102 GITN  105 (500)
Q Consensus       102 gis~  105 (500)
                      ++++
T Consensus        80 s~sG   83 (418)
T COG0849          80 SLSG   83 (418)
T ss_pred             Eecc
Confidence            5554

>PTZ00107 hexokinase; Provisional

Probab=90.84  E-value=1.4  Score=46.37  Aligned_cols=61  Identities=11%  Similarity=0.136  Sum_probs=40.0

Q ss_pred             EEEEecCCCcceEEEEeCCCCc-EEEEEEeeeee--ec---CCCC-ccccCHHHHHHHHHHHHHHHHHH
Q psy9709          26 IGVIDEGTRTVRFAIISALTQE-EVVSHSMDIST--IS---PQEG-WAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~-~l~~~~~~~~~--~~---~~~g-~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      +++||+|+||.|+++++. .|+ .....+..+..  ..   +.+. -.+...+++|+.+.++|.+.+++
T Consensus        76 fLAlDlGGTN~RV~~V~L-~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~  143 (464)
T PTZ00107         76 YYAIDFGGTNFRAVRVSL-RGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEE  143 (464)
T ss_pred             EEEEecCCceEEEEEEEe-CCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHh
Confidence            456999999999999998 664 33333333321  10   0000 11226789999999999999976

>PRK13331 pantothenate kinase; Reviewed

Probab=90.68  E-value=0.91  Score=43.65  Aligned_cols=58  Identities=12%  Similarity=0.040  Sum_probs=37.5

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      +++||+|-|++|.++||.  .+++...+  +...      ...|           ++.+++.   .+++.++|.++.+++
T Consensus         9 ~L~iDiGNT~~~~g~f~~--~~~~~~~r--t~~~------~t~d-----------~~~~l~~---~~~~~~~i~~~iisS   64 (251)
T PRK13331          9 WLALMIGNSRLHWGYFSG--ETLVKTWD--TPHL------DESI-----------IQLLLPG---QTLLIVAPNPLVIAS   64 (251)
T ss_pred             EEEEEeCCCcEEEEEEEC--CEEEEEEE--cCCc------chHH-----------HHHHHHH---cCCCccccCEEEEEe
Confidence            566999999999999995  45554322  2100      1111           5555555   666777888888886


Q ss_pred             Cc
Q psy9709         106 QR  107 (500)
Q Consensus       106 ~~  107 (500)
                      --
T Consensus        65 VV   66 (251)
T PRK13331         65 VV   66 (251)
T ss_pred             cC
Confidence            53

>PRK13317 pantothenate kinase; Provisional

Probab=90.60  E-value=0.66  Score=45.43  Aligned_cols=26  Identities=12%  Similarity=0.202  Sum_probs=21.5

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVS   51 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~   51 (500)
                      +.+|||+|+|.+|++++|. +++++.+
T Consensus         3 ~~iGIDiGstt~K~v~~~~-~~~~~~~   28 (277)
T PRK13317          3 MKIGIDAGGTLTKIVYLEE-KKQRTFK   28 (277)
T ss_pred             ceEEEEeCcccEEEEEEcC-CCeEEEE
Confidence            4567999999999999997 7776644

>PRK13324 pantothenate kinase; Reviewed

Probab=90.49  E-value=1.1  Score=43.50  Aligned_cols=65  Identities=14%  Similarity=0.232  Sum_probs=39.6

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++.||+|-|++|.++||.  ++++...+.++..       .....+++..    .++.+++.   .+.+..+|.++.+|+
T Consensus         2 iL~iDiGNT~ik~gl~~~--~~~~~~~r~~t~~-------~~~t~de~~~----~l~~~~~~---~~~~~~~i~~viisS   65 (258)
T PRK13324          2 LLVMDMGNSHIHIGVFDG--DRIVSQIRYATSS-------VDSTSDQMGV----FLRQALRE---NSVDLGKIDGCGISS   65 (258)
T ss_pred             EEEEEeCCCceEEEEEEC--CEEEEEEEEecCc-------cccchHHHHH----HHHHHHHh---cCCCccCCCeEEEEe
Confidence            455999999999999995  4566554444310       1123344443    44444444   455566788888885


Q ss_pred             C
Q psy9709         106 Q  106 (500)
Q Consensus       106 ~  106 (500)
                      -
T Consensus        66 V   66 (258)
T PRK13324         66 V   66 (258)
T ss_pred             C
Confidence            3

>TIGR01174 ftsA cell division protein FtsA

Probab=90.13  E-value=2.2  Score=43.64  Aligned_cols=81  Identities=15%  Similarity=0.114  Sum_probs=48.5

Q ss_pred             EEEEeccCCCceEEEEeCCC-C--eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         155 IGVIDEGTRTVRFAIISALT-Q--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~-G--~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      ++||||||+++|+++..... +  ++++....+..  .-..| ...|.+.+-+++.++++++-++   .+...+. ..++
T Consensus         2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~--gi~~G-~I~d~~~~~~~i~~al~~~e~~---~~~~i~~-v~~~   74 (371)
T TIGR01174         2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSR--GIKKG-VINDIEAAVGSIQRAIEAAELM---AGCEIRS-VIVS   74 (371)
T ss_pred             EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC--CccCc-EEEcHHHHHHHHHHHHHHHHHH---hCCcccE-EEEE
Confidence            67999999999999876432 3  44555544432  22333 4678888777777777776543   3444333 3455


Q ss_pred             EcCCCceeEEEeC
Q psy9709         232 ITNQRETTVVWDL  244 (500)
Q Consensus       232 vs~~~~~~v~~d~  244 (500)
                      +++.  .+...+.
T Consensus        75 v~g~--~v~~~~~   85 (371)
T TIGR01174        75 ISGA--HIKSQNS   85 (371)
T ss_pred             Eccc--ceEEEee
Confidence            5554  3444433

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>KOG1794|consensus

Probab=89.63  E-value=1.9  Score=41.72  Aligned_cols=74  Identities=15%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCC-eeEE
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD-IVTL  230 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~-I~~I  230 (500)
                      +.+++|++=|.|++|.+++|.. ++++.+........     | ....+..-+.+.+.++++..+   .+.+++. ++++
T Consensus         2 ~~~y~GvEGgaT~s~~Vivd~~-~~~~~~a~~~~Tnh-----~-~ig~~~~~~rie~~i~~A~~k---~g~d~~~~lr~l   71 (336)
T KOG1794|consen    2 KDFYGGVEGGATCSRLVIVDED-GTILGRAVGGGTNH-----W-LIGSTTCASRIEDMIREAKEK---AGWDKKGPLRSL   71 (336)
T ss_pred             CceeEeecCCcceeEEEEECCC-CCEeeEeecccccc-----c-cCCchHHHHHHHHHHHHHHhh---cCCCccCcccee
Confidence            5689999999999999999975 99998765543321     1 223455666777777777665   6888777 8877


Q ss_pred             EEcCC
Q psy9709         231 GITNQ  235 (500)
Q Consensus       231 ~vs~~  235 (500)
                      +++-.
T Consensus        72 gL~lS   76 (336)
T KOG1794|consen   72 GLGLS   76 (336)
T ss_pred             eeecc
Confidence            76533

>PTZ00288 glucokinase 1; Provisional

Probab=89.17  E-value=2  Score=44.35  Aligned_cols=57  Identities=14%  Similarity=0.170  Sum_probs=35.2

Q ss_pred             CCEEEEEeccCCCceEEEEeC--CCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHH
Q psy9709         152 VPLIGVIDEGTRTVRFAIISA--LTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIE  215 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~--~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~  215 (500)
                      -.|++++|||+|++|..+++.  ..+..+.....++++       ...|..+..+.+.+.++.+.+
T Consensus        25 ~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~   83 (405)
T PTZ00288         25 GPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNV-------TKTDIRELLEFFDEVLQKLKK   83 (405)
T ss_pred             CCeEEEEEecCCceEEEEEeccCCCCCceeEEEEeccc-------ccccHHHHHHHHHHHHHHHHh
Confidence            457999999999999999985  112233333333331       124556666666666665554

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=89.00  E-value=1.2  Score=42.72  Aligned_cols=53  Identities=13%  Similarity=0.126  Sum_probs=35.6

Q ss_pred             EEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHH
Q psy9709          28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA   84 (500)
Q Consensus        28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~   84 (500)
                      |||+||+++|+++.+. +++.++....+-...   .+..-.|.+.....+....+.+
T Consensus         1 g~dig~~~ik~v~~~~-~~~~~~~~~~~~~~~---~~g~I~d~~~~~~~l~~l~~~a   53 (239)
T TIGR02529         1 GVDLGTANIVIVVLDE-DGQPVAGVMQFADVV---RDGIVVDFLGAVEIVRRLKDTL   53 (239)
T ss_pred             CCCcccceEEEEEEec-CCCEEEEEecccccc---cCCeEEEhHHHHHHHHHHHHHH
Confidence            5999999999999998 676666554443322   2235668877666666665544

>TIGR00749 glk glucokinase, proteobacterial type

Probab=87.88  E-value=0.7  Score=46.22  Aligned_cols=24  Identities=25%  Similarity=0.228  Sum_probs=19.4

Q ss_pred             EEEeccCCCceEEEEeCCCCeEEEE
Q psy9709         156 GVIDEGTRTVRFAIISALTQEEVVS  180 (500)
Q Consensus       156 lgIDiGTts~k~~l~d~~~G~vi~~  180 (500)
                      |.+|||+|++|++++|.+ |..+..
T Consensus         1 l~~DIGGT~i~~glvd~~-g~~l~~   24 (316)
T TIGR00749         1 LVGDIGGTNARLALCEIA-PGEISQ   24 (316)
T ss_pred             CeEecCcceeeEEEEecC-CCceee
Confidence            469999999999999975 665543

This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=87.86  E-value=4.3  Score=42.05  Aligned_cols=59  Identities=19%  Similarity=0.123  Sum_probs=37.4

Q ss_pred             EEEEEeccCCCceEEEEeCCCC---eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHH
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQ---EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIE  215 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G---~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~  215 (500)
                      ++.++||||+.+++++--..++   ++++..+.+..  --+.| ...|.+..-++++.+++++-.
T Consensus         7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~Sr--Gik~G-~I~di~~~~~sI~~av~~AE~   68 (418)
T COG0849           7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSR--GIKKG-VIVDLDAAAQSIKKAVEAAER   68 (418)
T ss_pred             eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCc--ccccc-eEEcHHHHHHHHHHHHHHHHH
Confidence            8999999999999998765544   22333222211  11233 466888777777777766644

>PRK12440 acetate kinase; Reviewed

Probab=87.81  E-value=2.3  Score=43.58  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=25.0

Q ss_pred             ccCcEEEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709          21 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHS   53 (500)
Q Consensus        21 m~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~   53 (500)
                      |...+|++|..|+||+|..|||....+++.+..
T Consensus         1 ~~~~~ILviN~GSSSlKf~l~~~~~~~~l~~G~   33 (397)
T PRK12440          1 MSNSYVLVINSGSSSLKFAVIDSVTGEAVLSGL   33 (397)
T ss_pred             CCCCEEEEEECChHhheEEEEecCCCceEEEEE
Confidence            445678889999999999999963445665543

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=87.37  E-value=3.6  Score=41.61  Aligned_cols=75  Identities=12%  Similarity=0.127  Sum_probs=42.8

Q ss_pred             cEEEEEecCCCcceEEEEeCCCC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      ..++|||+|++++|++.+....+  +++.....+.+...-..| .-.|++++    .+++++++++   .++... -+.+
T Consensus         3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g-~i~d~~~~----~~~l~~~~~~---~~~~~k-~v~~   73 (348)
T TIGR01175         3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEG-HIVEYQAV----AEALKELLSE---LGINTK-KAAT   73 (348)
T ss_pred             CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCC-CccCHHHH----HHHHHHHHHH---cCCCcc-eEEE
Confidence            35677999999999999985223  344444445542211222 23456554    4555555555   444333 3567


Q ss_pred             EEcCCc
Q psy9709         102 GITNQR  107 (500)
Q Consensus       102 gis~~~  107 (500)
                      ++.+..
T Consensus        74 alp~~~   79 (348)
T TIGR01175        74 AVPGSA   79 (348)
T ss_pred             EecCCe
Confidence            777654

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional

Probab=87.36  E-value=2.9  Score=42.19  Aligned_cols=76  Identities=14%  Similarity=0.181  Sum_probs=54.2

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCcc-ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~-e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .++|||--+..+-++|+|. +|+++..........+.+ |-+ +.....-.+.+...+++++++   ++++.++|.+|++
T Consensus         2 ~iLgIETScd~tsvAl~~~-~~~il~~~~~sq~~~~G~-GvvP~~a~r~H~~~l~~~i~~~l~~---a~~~~~did~Iav   76 (345)
T PTZ00340          2 LALGIEGSANKLGVGIVTS-DGEILSNVRETYITPPGT-GFLPRETAQHHREHILSLVKEALEE---AKITPSDISLICY   76 (345)
T ss_pred             eEEEEEccchhhEEEEEEC-CCcEEEEEEeeccccCCC-CcCchHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEE
Confidence            4788999999999999997 788887654333211111 322 233455677777888888877   8999999999999


Q ss_pred             cC
Q psy9709         104 TN  105 (500)
Q Consensus       104 s~  105 (500)
                      |.
T Consensus        77 t~   78 (345)
T PTZ00340         77 TK   78 (345)
T ss_pred             ec
Confidence            86

>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional

Probab=87.12  E-value=3.2  Score=43.29  Aligned_cols=35  Identities=14%  Similarity=0.261  Sum_probs=28.2

Q ss_pred             ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecc
Q psy9709         150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS  186 (500)
Q Consensus       150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~  186 (500)
                      .++..++.||||+..+-.++|.  +|+++.....+..
T Consensus       143 Eke~gVa~IDIGgGTT~iaVf~--~G~l~~T~~l~vG  177 (475)
T PRK10719        143 ERNTRVLNIDIGGGTANYALFD--AGKVIDTACLNVG  177 (475)
T ss_pred             hccCceEEEEeCCCceEEEEEE--CCEEEEEEEEecc
Confidence            4556678899999999999998  3999987766654

>PRK13320 pantothenate kinase; Reviewed

Probab=86.45  E-value=2.4  Score=40.69  Aligned_cols=25  Identities=28%  Similarity=0.321  Sum_probs=19.8

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEE
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSH   52 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~   52 (500)
                      ++.||+|-|++|.++|+.  ++++...
T Consensus         4 ~L~iDiGNT~ik~~~~~~--~~~~~~~   28 (244)
T PRK13320          4 NLVIDIGNTTTKLAVFEG--DELLEVF   28 (244)
T ss_pred             EEEEEeCCCcEEEEEEEC--CEEEEEE
Confidence            455999999999999995  5666543

>COG5026 Hexokinase [Carbohydrate transport and metabolism]

Probab=86.25  E-value=2.2  Score=43.72  Aligned_cols=60  Identities=15%  Similarity=0.144  Sum_probs=39.6

Q ss_pred             EEEEEecCCCcceEEEEeCC-CCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          25 LIGVIDEGTRTVRFAIISAL-TQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~-~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      -+++||+|+||.|++++... +|+..-..+ ++.  .|..-...+.++++|.-+++.++..+++
T Consensus        76 ~~LaiD~GGTnlRvc~V~l~g~gt~~~~~s-ks~--lp~e~~~~~~~~~l~~~iadrl~~fi~~  136 (466)
T COG5026          76 SVLAIDLGGTNLRVCLVVLGGDGTFDIEQS-KSF--LPVECRDSESRDELFGFIADRLAAFIKE  136 (466)
T ss_pred             CEEEEecCCceEEEEEEEeCCCCCcccccC-ccc--CchhhccCCChHHHHHHHHHHHHHHHHH
Confidence            46679999999999999872 333332221 111  2222222337899999999999998765

>PRK07058 acetate kinase; Provisional

Probab=86.11  E-value=3.1  Score=42.50  Aligned_cols=32  Identities=16%  Similarity=0.306  Sum_probs=24.5

Q ss_pred             cCcEEEEEecCCCcceEEEEeCCCC--cEEEEEE
Q psy9709          22 QVPLIGVIDEGTRTVRFAIISALTQ--EEVVSHS   53 (500)
Q Consensus        22 ~~~~i~giDiGtt~~k~~v~d~~~g--~~l~~~~   53 (500)
                      ++++|++|..|+||+|..|||..+.  +++.+..
T Consensus         2 ~~~~iLviNaGSSSlKf~l~~~~~~~~~~l~~G~   35 (396)
T PRK07058          2 SKPLLLTFNAGSSTVKIGLFEVDGNEARRIGKGD   35 (396)
T ss_pred             CCCEEEEEECChHhheeEEEecCCCCceEEEEEE
Confidence            5678899999999999999996223  4555543

>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type

Probab=85.75  E-value=3.2  Score=40.59  Aligned_cols=25  Identities=12%  Similarity=0.048  Sum_probs=21.1

Q ss_pred             EEEecCCCcceEEEEeCCCCcEEEEE
Q psy9709          27 GVIDEGTRTVRFAIISALTQEEVVSH   52 (500)
Q Consensus        27 ~giDiGtt~~k~~v~d~~~g~~l~~~   52 (500)
                      +|||+|+|-+|.+..|. +++++...
T Consensus         3 iGiDiGgT~~Kiv~~~~-~~~~~f~~   27 (279)
T TIGR00555         3 IGIDIGGTLIKVVYEEP-KGRRKFKT   27 (279)
T ss_pred             EEEEeCcceEEEEEEcC-CCcEEEEE
Confidence            46999999999999997 88887543

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).

>PRK09604 UGMP family protein; Validated

Probab=85.00  E-value=4.3  Score=40.94  Aligned_cols=77  Identities=16%  Similarity=0.205  Sum_probs=52.2

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeee-eecCCCCcc-ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS-TISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~-~~~~~~g~~-e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      .++|||--+-.+-++|+|. +++++........ ...+..|-. +.....--+.+...+++++++   .++++.+|.+|+
T Consensus         2 ~iLgIdTS~~~~sval~~~-~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~---~~~~~~did~ia   77 (332)
T PRK09604          2 LILGIETSCDETSVAVVDD-GRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKE---AGLTLEDIDAIA   77 (332)
T ss_pred             eEEEEEccccceEEEEEEC-CCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEE
Confidence            4788999777899999996 6688876543221 111112211 223345566777788888877   889999999999


Q ss_pred             EcC
Q psy9709         103 ITN  105 (500)
Q Consensus       103 is~  105 (500)
                      ++.
T Consensus        78 vt~   80 (332)
T PRK09604         78 VTA   80 (332)
T ss_pred             Eec
Confidence            987

>PRK07157 acetate kinase; Provisional

Probab=84.92  E-value=2.8  Score=42.91  Aligned_cols=28  Identities=18%  Similarity=0.332  Sum_probs=21.9

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHS   53 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~   53 (500)
                      |++|..|+||+|..|||..+.+++.+..
T Consensus         5 iLvlN~GSSSlKf~lf~~~~~~~l~~G~   32 (400)
T PRK07157          5 ILVINAGSSSIKWQLFDKENLNLIASGL   32 (400)
T ss_pred             EEEEECChHhheeEEEECCCCcEEEEEE
Confidence            7779999999999999963345665544

>PRK13326 pantothenate kinase; Reviewed

Probab=84.23  E-value=3.7  Score=39.84  Aligned_cols=29  Identities=17%  Similarity=0.296  Sum_probs=21.9

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeee
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDI   56 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~   56 (500)
                      +++||+|-|++|.++||.  ++++...+.++
T Consensus         8 ~L~IDiGNT~ik~glf~~--~~l~~~~r~~t   36 (262)
T PRK13326          8 QLIIDIGNTSISFALYKD--NKMQIFCKLKT   36 (262)
T ss_pred             EEEEEeCCCeEEEEEEEC--CEEEEEEEecc
Confidence            566999999999999995  56665444443

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=84.04  E-value=4.3  Score=41.00  Aligned_cols=92  Identities=16%  Similarity=0.170  Sum_probs=46.2

Q ss_pred             EEecCCCcceEEEEeCCCCc---EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          28 VIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        28 giDiGtt~~k~~v~d~~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      |||||+.++|++-++. .++   +......++|...-.+| ...|++.+-+++.+++++.       ++. .+-+.+++.
T Consensus         1 GiDiG~~siK~v~l~~-~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l~~~L~~~~~~~-------~~~-~k~v~~aip   70 (340)
T PF11104_consen    1 GIDIGSSSIKAVELSK-KGNRFQLEAFASIPLPPGAISDG-EIVDPEALAEALKELLKEN-------KIK-GKKVVLAIP   70 (340)
T ss_dssp             EEEE-SSEEEEEEEET-TTT--EEEEEEEEE--TTSEETT-EES-HHHHHHHHHHHHHHH-------T-----EEEEEE-
T ss_pred             CeecCCCeEEEEEEEE-cCCccEEEEEEEEECCCCCccCC-CcCCHHHHHHHHHHHHHHc-------CCC-CCeEEEEeC
Confidence            6999999999999997 553   34445566652211122 3456776555555444443       332 345667777


Q ss_pred             CCccee--EEeeCC-CCCccccccccCC
Q psy9709         105 NQRETT--VVWDLN-TGEPLYNAIDKMP  129 (500)
Q Consensus       105 ~~~~~~--v~~d~~-~g~pl~p~i~w~d  129 (500)
                      ++.--+  +-+... +.+-+..+|.|.-
T Consensus        71 ~~~vi~r~i~lP~~m~~~el~~~I~~Ea   98 (340)
T PF11104_consen   71 GSSVIIRNIRLPAVMPEKELEEAIRWEA   98 (340)
T ss_dssp             GGG-EEEEEEEE----HHHHHHHHHHHH
T ss_pred             CCcEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            654332  222221 2466777777753

>PRK13324 pantothenate kinase; Reviewed

Probab=83.75  E-value=5  Score=38.86  Aligned_cols=64  Identities=13%  Similarity=0.230  Sum_probs=37.0

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  234 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~  234 (500)
                      +|.||+|.|++|.++||.  ++++...+.++..       .....+++...+...+    ..   .+.+..+|..+.+++
T Consensus         2 iL~iDiGNT~ik~gl~~~--~~~~~~~r~~t~~-------~~~t~de~~~~l~~~~----~~---~~~~~~~i~~viisS   65 (258)
T PRK13324          2 LLVMDMGNSHIHIGVFDG--DRIVSQIRYATSS-------VDSTSDQMGVFLRQAL----RE---NSVDLGKIDGCGISS   65 (258)
T ss_pred             EEEEEeCCCceEEEEEEC--CEEEEEEEEecCc-------cccchHHHHHHHHHHH----Hh---cCCCccCCCeEEEEe
Confidence            678999999999999993  5666544333310       1223445444444333    22   234445677767663

>PLN02914 hexokinase

Probab=83.62  E-value=2.1  Score=45.29  Aligned_cols=60  Identities=13%  Similarity=0.174  Sum_probs=42.4

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCe---EEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK  216 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~---vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~  216 (500)
                      -.+++||+|+||.|+++++.. |+   ++...+..+++  | .....-..+++++.+.+|+++.+++
T Consensus        95 G~fLAlDlGGTNfRV~~V~L~-g~~~~~~~~~~~~~~i--p-~~l~~gt~~eLFdfIA~~i~~fl~~  157 (490)
T PLN02914         95 GLFYALDLGGTNFRVLRVQLG-GKDERVIATEFEQVSI--P-QELMFGTSEELFDFIASGLANFVAK  157 (490)
T ss_pred             eEEEEEecCCceEEEEEEEec-CCCCceeeeeEEEecC--C-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence            457899999999999999975 52   44443343332  1 1122345689999999999999875

>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional

Probab=83.32  E-value=4.4  Score=43.29  Aligned_cols=80  Identities=11%  Similarity=0.173  Sum_probs=48.1

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCC--eEEEEeeeecccc--cCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI  227 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~--~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I  227 (500)
                      ..++.+||+||+|+|..+++...|  +++...+.....-  ....|  ..++ +-.+...+|+++..+.+...  +..+|
T Consensus         5 ~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~-e~i~r~~~~L~~F~~~~~~~--~v~~i   79 (496)
T PRK11031          5 SSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDN--ALSN-EAMERGWQCLRLFAERLQDI--PPSQI   79 (496)
T ss_pred             CCEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCC--CcCH-HHHHHHHHHHHHHHHHHHhC--CCCeE
Confidence            567899999999999999996435  3333333333321  11122  2223 34445566777766655433  45678


Q ss_pred             eEEEEcCCC
Q psy9709         228 VTLGITNQR  236 (500)
Q Consensus       228 ~~I~vs~~~  236 (500)
                      .+++.++..
T Consensus        80 ~~vATsAvR   88 (496)
T PRK11031         80 RVVATATLR   88 (496)
T ss_pred             EEEEeHHHH
Confidence            888876654

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=83.28  E-value=3.9  Score=41.35  Aligned_cols=55  Identities=16%  Similarity=0.225  Sum_probs=31.4

Q ss_pred             EEeccCCCceEEEEeCCCC--eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHH
Q psy9709         157 VIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR  212 (500)
Q Consensus       157 gIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~  212 (500)
                      |||||+.++|++-++...+  ++......++|.-.-.+| ...|++.+-+.+.+++++
T Consensus         1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l~~~L~~~~~~   57 (340)
T PF11104_consen    1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDG-EIVDPEALAEALKELLKE   57 (340)
T ss_dssp             EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETT-EES-HHHHHHHHHHHHHH
T ss_pred             CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCC-CcCCHHHHHHHHHHHHHH
Confidence            8999999999999997423  445666666663222222 345666655555444443

>PRK10854 exopolyphosphatase; Provisional

Probab=83.22  E-value=4.3  Score=43.54  Aligned_cols=79  Identities=11%  Similarity=0.173  Sum_probs=47.4

Q ss_pred             CEEEEEeccCCCceEEEEeCCCC--eEEEEeeeecccc--cCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV  228 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~--~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~  228 (500)
                      ..+.+||+||+|+|..+++..+|  +++...+.....-  ....|  ..++ +-.+..++|+++..+.+...  ..+++.
T Consensus        11 ~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g--~Ls~-e~~~r~~~~L~~F~~~~~~~--~v~~v~   85 (513)
T PRK10854         11 QEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDN--MLSE-EAMERGLNCLSLFAERLQGF--SPANVC   85 (513)
T ss_pred             CEEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCC--CcCH-HHHHHHHHHHHHHHHHHHhC--CCCeEE
Confidence            45788999999999999997545  4444444443321  11122  2233 34455566777766655443  346788


Q ss_pred             EEEEcCCC
Q psy9709         229 TLGITNQR  236 (500)
Q Consensus       229 ~I~vs~~~  236 (500)
                      +++.++..
T Consensus        86 ~vATsAlR   93 (513)
T PRK10854         86 IVGTHTLR   93 (513)
T ss_pred             EEehHHHH
Confidence            88866544

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=83.11  E-value=4.7  Score=38.59  Aligned_cols=52  Identities=15%  Similarity=0.164  Sum_probs=32.2

Q ss_pred             EEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHH
Q psy9709         157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR  212 (500)
Q Consensus       157 gIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~  212 (500)
                      ||||||+++|+++.+.. ++-++....+-.  --.+| ...|.+.....+....+.
T Consensus         1 g~dig~~~ik~v~~~~~-~~~~~~~~~~~~--~~~~g-~I~d~~~~~~~l~~l~~~   52 (239)
T TIGR02529         1 GVDLGTANIVIVVLDED-GQPVAGVMQFAD--VVRDG-IVVDFLGAVEIVRRLKDT   52 (239)
T ss_pred             CCCcccceEEEEEEecC-CCEEEEEecccc--cccCC-eEEEhHHHHHHHHHHHHH
Confidence            69999999999999976 544444333222  11233 466777665555554443

>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]

Probab=83.03  E-value=1.7  Score=41.93  Aligned_cols=34  Identities=18%  Similarity=0.203  Sum_probs=27.7

Q ss_pred             ccCcEEEEEecCCCcceEEEEeCCCCcEEEEEEee
Q psy9709          21 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMD   55 (500)
Q Consensus        21 m~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~   55 (500)
                      |.+.++++||=||||.|+-+++. +|+++.+.+-.
T Consensus         2 m~~~~~i~iDWGTT~~R~wL~~~-dg~~l~~r~~~   35 (306)
T COG3734           2 MSEPAYIAIDWGTTNLRAWLVRG-DGAVLAERRSE   35 (306)
T ss_pred             CCCceEEEEecCCccEEEEEEcC-Ccceeeeeccc
Confidence            34456677999999999999998 99999876543

>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon

Probab=82.84  E-value=4.4  Score=42.27  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=27.2

Q ss_pred             cccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeee
Q psy9709         149 QTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMD  184 (500)
Q Consensus       149 ~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~  184 (500)
                      +.....++-||||+..+..++|+.  |++++..-..
T Consensus       139 ~~~~~~V~NiDIGGGTtN~avf~~--G~v~~T~cl~  172 (473)
T PF06277_consen  139 KEHHTVVANIDIGGGTTNIAVFDN--GEVIDTACLD  172 (473)
T ss_pred             hhhCCeEEEEEeCCCceeEEEEEC--CEEEEEEEEe
Confidence            345567899999999999999993  9999776444

The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.

>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]

Probab=82.74  E-value=1.4  Score=45.33  Aligned_cols=28  Identities=29%  Similarity=0.389  Sum_probs=22.5

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHS   53 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~   53 (500)
                      |++|..|+||+|++|||..+.+++.+..
T Consensus         2 ILVIN~GSSS~Kfalf~~~~~~~l~~g~   29 (388)
T PF00871_consen    2 ILVINPGSSSTKFALFDMDSGEVLASGL   29 (388)
T ss_dssp             EEEEEEESSEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCChHhheeeeEECCCCCeeeech
Confidence            5679999999999999985566776544

The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....

>PLN02362 hexokinase

Probab=82.52  E-value=2.4  Score=45.08  Aligned_cols=58  Identities=10%  Similarity=0.113  Sum_probs=40.1

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCe---EEEE--eeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQE---EVVS--HSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK  216 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~---vi~~--~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~  216 (500)
                      -.+++||+|+||.|+++++.. |+   .+..  .+.+.|..     ...-..+++++.|.+|+.+.+++
T Consensus        95 G~fLAlDlGGTNfRV~~V~L~-g~~~~~~~~~~~~~~Ip~~-----l~~~~~~eLFd~IA~~i~~fl~~  157 (509)
T PLN02362         95 GTYYALDLGGTNFRVLRVQLG-GQRSSILSQDVERHPIPQH-----LMNSTSEVLFDFIASSLKQFVEK  157 (509)
T ss_pred             eeEEEEecCCceEEEEEEEec-CCCcceeeceeEEEecChh-----hccCCHHHHHHHHHHHHHHHHHh
Confidence            347899999999999999985 62   2211  22222211     12346789999999999999875

>PLN02666 5-oxoprolinase

Probab=82.44  E-value=2  Score=50.72  Aligned_cols=88  Identities=10%  Similarity=0.112  Sum_probs=50.8

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHH-HHHHHHHHHHHHHHHH-H-HhCCCCCCCeeE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPM-EILQAVQTTMDRAIEK-L-SAHGLSRDDIVT  100 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~-~~~~~~~~~i~~~~~~-~-~~~~~~~~~i~~  100 (500)
                      .+.++||+|+|-+-++++|. ++.-+...+.++.  .|      .||. .+.+.+.+++++++.. + ...++++++|..
T Consensus         9 ~~rigIDvGGTFTD~v~~~~-~~~~~~~~K~~st--tp------~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~~   79 (1275)
T PLN02666          9 KFRFCIDRGGTFTDVYAEVP-GGSDFRVLKLLSV--DP------ANYDDAPREGIRRILEEVTGKKIPRSAKIPTERIEW   79 (1275)
T ss_pred             CEEEEEECCcCCEeEEEEec-CCCeEEEEEeCCC--CC------CChhHHHHHHHHHHHHHHhcCCcccccCCChHHccE
Confidence            36677999999999999997 6654444444431  11      2332 3455555554444210 0 013555667888


Q ss_pred             EEEcCCcceeEEeeCCCCCcc
Q psy9709         101 LGITNQRETTVVWDLNTGEPL  121 (500)
Q Consensus       101 Igis~~~~~~v~~d~~~g~pl  121 (500)
                      |..+++..+=.++.+ .|.++
T Consensus        80 v~hGTT~atNAller-kGa~v   99 (1275)
T PLN02666         80 IRMGTTVATNALLER-KGERI   99 (1275)
T ss_pred             EEEechHHHHHHHhc-cCCcE
Confidence            877777666556665 35443

>TIGR00016 ackA acetate kinase

Probab=81.94  E-value=3.8  Score=42.09  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=21.6

Q ss_pred             EEEEecCCCcceEEEEeCCC-CcEEEEEE
Q psy9709          26 IGVIDEGTRTVRFAIISALT-QEEVVSHS   53 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~-g~~l~~~~   53 (500)
                      |++|..|+||+|..+||..+ .+++.+..
T Consensus         6 iLvlN~GSSSlKf~lf~~~~~~~~l~~G~   34 (404)
T TIGR00016         6 ILVINAGSSSLKFALFDYTNGETVLLSGL   34 (404)
T ss_pred             EEEEECChHhheEEEEecCCCCceEEEEE
Confidence            77799999999999999623 45655443

Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.

>PLN02405 hexokinase

Probab=81.83  E-value=2.8  Score=44.44  Aligned_cols=60  Identities=12%  Similarity=0.139  Sum_probs=42.4

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCe---EEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK  216 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~---vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~  216 (500)
                      -.+++||+|+||.|++++... |+   .+...+..+++  | +....-..+++++.+.+|+.+.+++
T Consensus        95 G~flAlDlGGTNfRV~~V~L~-g~~~~~~~~~~~~~~i--p-~~~~~gt~~~LFdfIA~~i~~fl~~  157 (497)
T PLN02405         95 GLFYALDLGGTNFRVLRVLLG-GKDGRVVKQEFEEVSI--P-PHLMTGSSDALFDFIAAALAKFVAT  157 (497)
T ss_pred             eeEEEEecCCceEEEEEEEEc-CCCCceeEEEEEEeec--C-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence            357899999999999999985 52   34433333332  1 1122446789999999999999875

>PLN02596 hexokinase-like

Probab=81.80  E-value=2.7  Score=44.53  Aligned_cols=60  Identities=8%  Similarity=-0.001  Sum_probs=41.3

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCe---EEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK  216 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~---vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~  216 (500)
                      --+++||+|+||.|+++++.. |+   +....+..+++  | .....-..+++++.+.+|+.+.+++
T Consensus        96 G~yLAlDlGGTNfRV~~V~L~-g~~~~~~~~~~~~~~I--p-~~l~~~t~~eLFd~IA~~i~~fl~~  158 (490)
T PLN02596         96 GLYYGLNLRGSNFLLLRARLG-GKNEPISDLYREEISI--P-SNVLNGTSQELFDYIALELAKFVAE  158 (490)
T ss_pred             eEEEEEeeCCceEEEEEEEEc-CCCCceEEEEEEEecC--C-hHhhcCCHHHHHHHHHHHHHHHHHh
Confidence            346899999999999999985 63   23333333331  1 1112335688999999999999875

>TIGR03706 exo_poly_only exopolyphosphatase

Probab=81.77  E-value=4.7  Score=40.01  Aligned_cols=77  Identities=17%  Similarity=0.236  Sum_probs=42.6

Q ss_pred             EEEEeccCCCceEEEEeCCCC--eEEEEeeeecccc--cCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         155 IGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~--~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      +.+||+||+++|..+++..++  +.+...+.+...-  ....|  ..+++ -.+.+.+++++..+.+...+  .+++.++
T Consensus         2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g--~i~~e-~i~~~~~~l~~f~~~~~~~~--v~~i~~v   76 (300)
T TIGR03706         2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTG--RLSEE-AIERALEALKRFAELLRGFP--VDEVRAV   76 (300)
T ss_pred             eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCC--CcCHH-HHHHHHHHHHHHHHHHHhCC--CCeEEEE
Confidence            468999999999999996434  3333333333221  11111  22333 33444566666666554333  4577777


Q ss_pred             EEcCCC
Q psy9709         231 GITNQR  236 (500)
Q Consensus       231 ~vs~~~  236 (500)
                      +.++..
T Consensus        77 aTsa~R   82 (300)
T TIGR03706        77 ATAALR   82 (300)
T ss_pred             EcHHHH
Confidence            755443

It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.

>COG4020 Uncharacterized protein conserved in archaea [Function unknown]

Probab=81.63  E-value=3.4  Score=39.13  Aligned_cols=63  Identities=17%  Similarity=0.295  Sum_probs=37.5

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +| |||-|||++|++++|. ++....+--+           +|  ..+.-  =...++++-++   +++..++|.-|+++
T Consensus         5 fV-GiDHGTsgi~~ai~d~-e~~~~Fklgr-----------ae--~~~~~--ek~~L~~l~de---~~i~l~eidlialt   64 (332)
T COG4020           5 FV-GIDHGTSGIKFAIYDG-EKDPEFKLGR-----------AE--LRKVA--EKSLLRELEDE---ARIALEEIDLIALT   64 (332)
T ss_pred             EE-eecCCCcceEEEEEcC-CCCceEEech-----------hh--hhhhh--HHHHHHHhhHh---hCCccccceEEEEe
Confidence            55 4999999999999996 6654432110           11  01110  12334444444   66777888888887


Q ss_pred             CCc
Q psy9709         105 NQR  107 (500)
Q Consensus       105 ~~~  107 (500)
                      --|
T Consensus        65 YsM   67 (332)
T COG4020          65 YSM   67 (332)
T ss_pred             ecc
Confidence            554

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=81.26  E-value=5.2  Score=40.44  Aligned_cols=74  Identities=12%  Similarity=0.139  Sum_probs=42.6

Q ss_pred             CEEEEEeccCCCceEEEEeCCCC--eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      ..++|||||++++|++.+....+  +++.....+.|.-.-.+|. ..|.+.+-    .++++++++   .+..... ..+
T Consensus         3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~-i~d~~~~~----~~l~~~~~~---~~~~~k~-v~~   73 (348)
T TIGR01175         3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGH-IVEYQAVA----EALKELLSE---LGINTKK-AAT   73 (348)
T ss_pred             CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCC-ccCHHHHH----HHHHHHHHH---cCCCcce-EEE
Confidence            46899999999999999985423  4555555555532223332 34655544    444555544   2333333 355


Q ss_pred             EEcCC
Q psy9709         231 GITNQ  235 (500)
Q Consensus       231 ~vs~~  235 (500)
                      ++.+.
T Consensus        74 alp~~   78 (348)
T TIGR01175        74 AVPGS   78 (348)
T ss_pred             EecCC
Confidence            55554

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>COG3894 Uncharacterized metal-binding protein [General function prediction only]

Probab=80.83  E-value=2  Score=44.58  Aligned_cols=38  Identities=16%  Similarity=0.121  Sum_probs=31.7

Q ss_pred             ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeeccc
Q psy9709         150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDIST  187 (500)
Q Consensus       150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~  187 (500)
                      ..+.|-+++|+|||.+++.++|.++|+++.+.....++
T Consensus       161 ~~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~q  198 (614)
T COG3894         161 KNEAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQ  198 (614)
T ss_pred             cceeeeeEEecccceeeeEEEeccCCcEEEeeeccCCC
Confidence            34678899999999999999999999999876554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	500
2d4w_A	504	Crystal Structure Of Glycerol Kinase From Cellulomo		1e-84
1gla_G	501	Structure Of The Regulatory Complex Of Escherichia		2e-76
3ezw_A	526	Crystal Structure Of A Hyperactive Escherichia Coli		2e-76
1bu6_O	501	Crystal Structures Of Escherichia Coli Glycerol Kin		2e-76
1bwf_Y	501	Escherichia Coli Glycerol Kinase Mutant With Bound		8e-76
2dpn_A	495	Crystal Structure Of The Glycerol Kinase From Therm		2e-74
3g25_A	501	1.9 Angstrom Crystal Structure Of Glycerol Kinase (		2e-73
4e1j_A	520	Crystal Structure Of Glycerol Kinase In Complex Wit		4e-73
3h3n_X	506	Glycerol Kinase H232r With Glycerol Length = 506		3e-70
3d7e_O	505	Enterococcus Casseliflavus Glycerol Kinase Mutant H		3e-70
3h45_X	506	Glycerol Kinase H232e With Ethylene Glycol Length =		3e-70
1r59_O	505	Enterococcus Casseliflavus Glycerol Kinase Length =		3e-70
3flc_O	518	Crystal Structure Of The His-Tagged H232r Mutant Of		3e-70
1xup_O	487	Enterococcus Casseliflavus Glycerol Kinase Complexe		4e-70
2zf5_O	497	Crystal Structure Of Highly Thermostable Glycerol K		2e-67
2w41_A	507	Crystal Structure Of Plasmodium Falciparum Glycerol		3e-65
2w40_A	503	Crystal Structure Of Plasmodium Falciparum Glycerol		5e-65
3gbt_A	504	Crystal Structure Of Gluconate Kinase From Lactobac		2e-13
2itm_A	484	Crystal Structure Of The E. Coli Xylulose Kinase Co		8e-11
3ifr_A	508	The Crystal Structure Of Xylulose Kinase From Rhodo		7e-04

>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp. Nt3060 Length = 504

Iteration: 1
 Score =  310 bits (795), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/397 (42%), Positives = 228/397 (57%), Gaps = 63/397 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
            ID+GT + R AI+   + E   +  ++   I P+ GW E +P +I   V+  +  A   
Sbjct: 6   AIDQGTTSSR-AIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLA--- 61
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
           L+   L+ +DI  +GITNQRET VVWD  TG+P+YNAIVW DTR   IVD++     D+ 
Sbjct: 62  LTRGNLTHEDIAAVGITNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDELGG---DEG 118
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT--- 333
            +  K I GLP++ YFS  K+ W++ NV   R   ++   LFG  DTW++WN+TG T   
Sbjct: 119 AEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWNMTGGTEGG 178
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG------------ 381
            HVTDVTNASRTMLM++D+L W   +     +P ++LP+IRSSSE+YG            
Sbjct: 179 VHVTDVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPDIRSSSEVYGHGRPRGLVPGVP 238
Query: 382 ----------------------------------------KVHSNNGLVTTVAYQFGPDA 401
                                                   KV S NGL+TTV Y+ G DA
Sbjct: 239 IAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIG-DA 297
Query: 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYW 461
             +YALEGSIAV G+ V+WLRDNL + ++  + E LA KV   G  YFVPAF GL+APYW
Sbjct: 298 PAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLFAPYW 357
Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           R DARG + G+T++  + HI RAALEA  FQ+R++++
Sbjct: 358 RPDARGALVGLTRYVNRNHIARAALEATAFQSREVVD 394

>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli Iiiglc With Glycerol Kinase Length = 501

Iteration: 1
 Score =  283 bits (723), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 157/402 (39%), Positives = 215/402 (53%), Gaps = 62/402 (15%)
Query: 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTT 209
           T+   I  +D+GT + R  ++        VS   +   I P+ GW E DPMEI     +T
Sbjct: 1   TEKKYIVALDQGTTSSRAVVMDHDANIISVSQR-EFEQIYPKPGWVEHDPMEIWATQSST 59
Query: 210 MDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVL 269
           +   +E L+   +S D I  +GITNQRETT+VW+  TG+P+YNAIVW   R   I + + 
Sbjct: 60  L---VEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLK 116
Query: 270 AKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNL 329
               D  +DY++   GL + PYFS  K+ W++ +V   R   +    LFGTVDTWL+W +
Sbjct: 117 ---RDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 173
Query: 330 TGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------- 382
           T    HVTD TNASRTML NI +L WD  + +   +P  +LPE+R SSE+YG+       
Sbjct: 174 TQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKG 233
Query: 383 ----------------------------------------------VHSNNGLVTTVAYQ 396
                                                         V S NGL+TT+A  
Sbjct: 234 GTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA-- 291
Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
            GP     YALEG++ +AGA+++WLRD + L+++  ++E  A KV  T  VY VPAF GL
Sbjct: 292 CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGL 351
Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
            APYW   ARG I G+T+     HIIRA LE+I +QTRD+LE
Sbjct: 352 GAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLE 393

>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices Length = 526

Iteration: 1
 Score =  283 bits (723), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 157/402 (39%), Positives = 215/402 (53%), Gaps = 62/402 (15%)
Query: 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTT 209
           T+   I  +D+GT + R  ++        VS   +   I P+ GW E DPMEI     +T
Sbjct: 1   TEKKYIVALDQGTTSSRAVVMDHDANIISVSQR-EFEQIYPKPGWVEHDPMEIWATQSST 59
Query: 210 MDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVL 269
           +   +E L+   +S D I  +GITNQRETT+VW+  TG+P+YNAIVW   R   I + + 
Sbjct: 60  L---VEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLK 116
Query: 270 AKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNL 329
               D  +DY++   GL + PYFS  K+ W++ +V   R   +    LFGTVDTWL+W +
Sbjct: 117 R---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 173
Query: 330 TGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------- 382
           T    HVTD TNASRTML NI +L WD  + +   +P  +LPE+R SSE+YG+       
Sbjct: 174 TQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIDGKG 233
Query: 383 ----------------------------------------------VHSNNGLVTTVAYQ 396
                                                         V S NGL+TT+A  
Sbjct: 234 GTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA-- 291
Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
            GP     YALEG++ +AGA+++WLRD + L+++  ++E  A KV  T  VY VPAF GL
Sbjct: 292 CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGL 351
Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
            APYW   ARG I G+T+     HIIRA LE+I +QTRD+LE
Sbjct: 352 GAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLE 393

>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And The Mutant A65t In An Inactive Tetramer: Conformational Changes And Implications For Allosteric Regulation Length = 501

Iteration: 1
 Score =  283 bits (723), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 157/402 (39%), Positives = 215/402 (53%), Gaps = 62/402 (15%)
Query: 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTT 209
           T+   I  +D+GT + R  ++        VS   +   I P+ GW E DPMEI     +T
Sbjct: 1   TEKKYIVALDQGTTSSRAVVMDHDANIISVSQR-EFEQIYPKPGWVEHDPMEIWATQSST 59
Query: 210 MDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVL 269
           +   +E L+   +S D I  +GITNQRETT+VW+  TG+P+YNAIVW   R   I + + 
Sbjct: 60  L---VEVLTKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLK 116
Query: 270 AKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNL 329
               D  +DY++   GL + PYFS  K+ W++ +V   R   +    LFGTVDTWL+W +
Sbjct: 117 R---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 173
Query: 330 TGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------- 382
           T    HVTD TNASRTML NI +L WD  + +   +P  +LPE+R SSE+YG+       
Sbjct: 174 TQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKG 233
Query: 383 ----------------------------------------------VHSNNGLVTTVAYQ 396
                                                         V S NGL+TT+A  
Sbjct: 234 GTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA-- 291
Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
            GP     YALEG++ +AGA+++WLRD + L+++  ++E  A KV  T  VY VPAF GL
Sbjct: 292 CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGL 351
Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
            APYW   ARG I G+T+     HIIRA LE+I +QTRD+LE
Sbjct: 352 GAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLE 393

>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp Analog Showing Substantial Domain Motion Length = 501

Iteration: 1
 Score =  281 bits (718), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 157/402 (39%), Positives = 214/402 (53%), Gaps = 62/402 (15%)
Query: 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTT 209
           T+   I  +D+GT + R  ++        VS   +   I P+ GW E DPMEI      T
Sbjct: 1   TEKKYIVALDQGTTSSRAVVMDHDANIISVSQR-EFEQIYPKPGWVEHDPMEIWATQSWT 59
Query: 210 MDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVL 269
           +   +E L+   +S D I  +GITNQRETT+VW+  TG+P+YNAIVW   R   I + + 
Sbjct: 60  L---VEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLK 116
Query: 270 AKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNL 329
               D  +DY++   GL + PYFS  K+ W++ +V   R   +    LFGTVDTWL+W +
Sbjct: 117 ---RDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 173
Query: 330 TGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------- 382
           T    HVTD TNASRTML NI +L WD  + +   +P  +LPE+R SSE+YG+       
Sbjct: 174 TQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKG 233
Query: 383 ----------------------------------------------VHSNNGLVTTVAYQ 396
                                                         V S NGL+TT+A  
Sbjct: 234 GTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA-- 291
Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
            GP     YALEG++ +AGA+++WLRD + L+++  ++E  A KV  T  VY VPAF GL
Sbjct: 292 CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGL 351
Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
            APYW   ARG I G+T+     HIIRA LE+I +QTRD+LE
Sbjct: 352 GAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLE 393

>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus Thermophilus Hb8 Length = 495

Iteration: 1
 Score =  276 bits (706), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 157/393 (39%), Positives = 211/393 (53%), Gaps = 62/393 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
            +D+GT + R AI+  L    V     +   + P+ GW E DP+EI +   TT+  A E 
Sbjct: 6   ALDQGTTSSR-AILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWE---TTLWAAREV 61
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
           L   G    +++ LGITNQRETT++WD  TG+PL+NAIVW D R   + + + AK     
Sbjct: 62  LRRAGAEAGEVLALGITNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRAK---GL 118
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
           +   +   GL   PYFS  KL WL++NV  ++   +     FGTVDTWL+WNLTG   H 
Sbjct: 119 EPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVDTWLIWNLTGGKVHA 178
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK-------------- 382
           TD TNASRT+L N+ +L WDP L +   +P  +LPE+R S   +G+              
Sbjct: 179 TDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPSDGDFGETLPELLGAPVPIRG 238
Query: 383 --------------------------------------VHSNNGLVTTVAYQFGPDATPI 404
                                                 V S  GL+ TVA+  G  AT  
Sbjct: 239 VLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLGGRAT-- 296
Query: 405 YALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKD 464
           YALEGS+ VAGAAV WL++ + L+    E E+LA  V  TGDVYFVPAF GL APYW   
Sbjct: 297 YALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVEDTGDVYFVPAFTGLGAPYWDPY 355
Query: 465 ARGVICGMTQFTTKGHIIRAALEAICFQTRDIL 497
           ARG + G+T+ T++ H+ RAALE + FQ RD++
Sbjct: 356 ARGTLLGLTRGTSRAHLARAALEGVAFQVRDVV 388

>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk) From Staphylococcus Aureus In Complex With Glycerol. Length = 501

Iteration: 1
 Score =  273 bits (697), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 151/394 (38%), Positives = 211/394 (53%), Gaps = 62/394 (15%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217
           ID+GT + R AI+     E       +     PQ GW E D  EI  +V   +    E +
Sbjct: 11  IDQGTTSSR-AILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSV---LAVXTEVI 66
Query: 218 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDK 277
           + + +  D I  +GITNQRETTVVWD +TG P+Y+AIVW   +  +I  ++  +  +Q  
Sbjct: 67  NENDVRADQIAGIGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSELKQQGYEQT- 125
Query: 278 DYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVT 337
              +   GL + PYF+  K+ W++ NV   R   +    LFGT+DTWLVW L+G+  H+T
Sbjct: 126 --FRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVWKLSGKAAHIT 183
Query: 338 DVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK--------------- 382
           D +NASRT+  NI  L+WD  L +   VP   LPE+++SSE+YGK               
Sbjct: 184 DYSNASRTLXFNIHDLEWDDELLELLTVPKNXLPEVKASSEVYGKTIDYHFYGQEVPIAG 243
Query: 383 --------------------------------------VHSNNGLVTTVAYQFGPDATPI 404
                                                 V S +GL+TT+AY  G D    
Sbjct: 244 VAGDQQAALFGQACFERGDVKNTYGTGGFXLXNTGDKAVKSESGLLTTIAY--GIDGKVN 301
Query: 405 YALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKD 464
           YALEGSI V+G+A++WLRD L  +++  ++ES A +V +T  VY VPAF GL  PYW  +
Sbjct: 302 YALEGSIFVSGSAIQWLRDGLRXINSAPQSESYATRVDSTEGVYVVPAFVGLGTPYWDSE 361
Query: 465 ARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           ARG I G+T+ T K H IRA LE++C+QTRD+ E
Sbjct: 362 ARGAIFGLTRGTEKEHFIRATLESLCYQTRDVXE 395

>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With Glycerol From Sinorhizobium Meliloti 1021 Length = 520

Iteration: 1
 Score =  272 bits (695), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 164/401 (40%), Positives = 212/401 (52%), Gaps = 75/401 (18%)
Query: 157 VIDEGTRTVRFAI------ISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTM 210
            ID+GT + R  +      I+ + Q+E   H        P+ GW E DP EI Q V +T+
Sbjct: 30  AIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHF-------PKSGWVEHDPEEIWQTVVSTV 82
Query: 211 DRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLA 270
             AIEK    G++ +DI  +GITNQRET VVWD  TG+P++NAIVW D R     D++  
Sbjct: 83  KEAIEK---SGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKK 139
Query: 271 KFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVR-RAIKENRCLFGTVDTWLVWNL 329
           K    +K ++K   GL + PYFS  KL+WL+ NV   + RA K   C FGT+DT+L+W L
Sbjct: 140 K--GLEKTFVKKT-GLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELC-FGTIDTFLIWRL 195
Query: 330 TGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG-------- 381
           TG  C  TD TNASRT+L NI    WD  L +   VP   LPE++  +  +G        
Sbjct: 196 TGGECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEXLPEVKDCAADFGVTDPSLFG 255
Query: 382 --------------------------------------------KVHSNNGLVTTVAYQF 397
                                                        V S N L+TT+AY+ 
Sbjct: 256 AAIPILGVAGDQQAATIGQACFKPGXLKSTYGTGCFALLNTGKDXVRSKNRLLTTIAYRL 315
Query: 398 GPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLY 457
             D    YALEGSI VAGAAV+WLRD L ++    +T SLAE    + +VY VPAF GL 
Sbjct: 316 --DGETTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLG 373
Query: 458 APYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           AP+W  DARG I G T+ T      RAALEA+C+QTRD+LE
Sbjct: 374 APHWDPDARGAIFGXTRNTGPAEFARAALEAVCYQTRDLLE 414

>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol Length = 506

Iteration: 1
 Score =  262 bits (670), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/395 (36%), Positives = 209/395 (52%), Gaps = 62/395 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
            ID+GT + R AII     +++ S   +     P+ GW E +  EI  +VQ+ +  A  +
Sbjct: 9   AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 67
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
               G+  + I  +GITNQRETTVVWD  TG+P+ NAIVW   ++  I DQ+     D  
Sbjct: 68  ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---DGH 121
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
            + +    GL +  YFSA K+ WL+ N+   +        LFGT+D+WLVW LT    HV
Sbjct: 122 TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHV 181
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH------------ 384
           TD +NASRTML NI  L+WD  +     +P ++LPE++S+SE+YG               
Sbjct: 182 TDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYRFYGSEVPIA 241
Query: 385 -----------------------------------------SNNGLVTTVAYQFGPDATP 403
                                                    S+N L+TT+ Y  G +   
Sbjct: 242 GMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKV 299
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
            YALEGSI VAG+A++WLRD L +++   ++E LA K     +VY VPAF GL APYW  
Sbjct: 300 YYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS 359
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           +ARG + G+T+ TTK   +RA L+A+ +Q++D+++
Sbjct: 360 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 394

>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant His232ala Complexed With Glycerol Length = 505

Iteration: 1
 Score =  262 bits (670), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/395 (36%), Positives = 209/395 (52%), Gaps = 62/395 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
            ID+GT + R AII     +++ S   +     P+ GW E +  EI  +VQ+ +  A  +
Sbjct: 8   AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 66
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
               G+  + I  +GITNQRETTVVWD  TG+P+ NAIVW   ++  I DQ+     D  
Sbjct: 67  ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---DGH 120
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
            + +    GL +  YFSA K+ WL+ N+   +        LFGT+D+WLVW LT    HV
Sbjct: 121 TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHV 180
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH------------ 384
           TD +NASRTML NI  L+WD  +     +P ++LPE++S+SE+YG               
Sbjct: 181 TDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYAFYGSEVPIA 240
Query: 385 -----------------------------------------SNNGLVTTVAYQFGPDATP 403
                                                    S+N L+TT+ Y  G +   
Sbjct: 241 GMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKV 298
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
            YALEGSI VAG+A++WLRD L +++   ++E LA K     +VY VPAF GL APYW  
Sbjct: 299 YYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS 358
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           +ARG + G+T+ TTK   +RA L+A+ +Q++D+++
Sbjct: 359 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 393

>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol Length = 506

Iteration: 1
 Score =  262 bits (670), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/395 (36%), Positives = 208/395 (52%), Gaps = 62/395 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
            ID+GT + R AII     +++ S   +     P+ GW E +  EI  +VQ+ +  A   
Sbjct: 9   AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGA--- 64
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
               G+  + I  +GITNQRETTVVWD  TG+P+ NAIVW   ++  I DQ+     D  
Sbjct: 65  FIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---DGH 121
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
            + +    GL +  YFSA K+ WL+ N+   +        LFGT+D+WLVW LT    HV
Sbjct: 122 TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHV 181
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH------------ 384
           TD +NASRTML NI  L+WD  +     +P ++LPE++S+SE+YG               
Sbjct: 182 TDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYEFYGSEVPIA 241
Query: 385 -----------------------------------------SNNGLVTTVAYQFGPDATP 403
                                                    S+N L+TT+ Y  G +   
Sbjct: 242 GMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKV 299
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
            YALEGSI VAG+A++WLRD L +++   ++E LA K     +VY VPAF GL APYW  
Sbjct: 300 YYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS 359
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           +ARG + G+T+ TTK   +RA L+A+ +Q++D+++
Sbjct: 360 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 394

>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Length = 505

Iteration: 1
 Score =  262 bits (670), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/395 (36%), Positives = 209/395 (52%), Gaps = 62/395 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
            ID+GT + R AII     +++ S   +     P+ GW E +  EI  +VQ+ +  A  +
Sbjct: 8   AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 66
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
               G+  + I  +GITNQRETTVVWD  TG+P+ NAIVW   ++  I DQ+     D  
Sbjct: 67  ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---DGH 120
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
            + +    GL +  YFSA K+ WL+ N+   +        LFGT+D+WLVW LT    HV
Sbjct: 121 TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHV 180
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH------------ 384
           TD +NASRTML NI  L+WD  +     +P ++LPE++S+SE+YG               
Sbjct: 181 TDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYHFYGSEVPIA 240
Query: 385 -----------------------------------------SNNGLVTTVAYQFGPDATP 403
                                                    S+N L+TT+ Y  G +   
Sbjct: 241 GMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKV 298
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
            YALEGSI VAG+A++WLRD L +++   ++E LA K     +VY VPAF GL APYW  
Sbjct: 299 YYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS 358
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           +ARG + G+T+ TTK   +RA L+A+ +Q++D+++
Sbjct: 359 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 393

>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of Glycerol Kinase From Enterococcus Casseliflavus With Glycerol Length = 518

Iteration: 1
 Score =  262 bits (670), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/395 (36%), Positives = 209/395 (52%), Gaps = 62/395 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
            ID+GT + R AII     +++ S   +     P+ GW E +  EI  +VQ+ +  A  +
Sbjct: 21  AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 79
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
               G+  + I  +GITNQRETTVVWD  TG+P+ NAIVW   ++  I DQ+     D  
Sbjct: 80  ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---DGH 133
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
            + +    GL +  YFSA K+ WL+ N+   +        LFGT+D+WLVW LT    HV
Sbjct: 134 TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHV 193
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH------------ 384
           TD +NASRTML NI  L+WD  +     +P ++LPE++S+SE+YG               
Sbjct: 194 TDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYRFYGSEVPIA 253
Query: 385 -----------------------------------------SNNGLVTTVAYQFGPDATP 403
                                                    S+N L+TT+ Y  G +   
Sbjct: 254 GMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKV 311
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
            YALEGSI VAG+A++WLRD L +++   ++E LA K     +VY VPAF GL APYW  
Sbjct: 312 YYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS 371
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           +ARG + G+T+ TTK   +RA L+A+ +Q++D+++
Sbjct: 372 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 406

>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With Glycerol Length = 487

Iteration: 1
 Score =  262 bits (669), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 144/395 (36%), Positives = 209/395 (52%), Gaps = 62/395 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
            ID+GT + R AII     +++ S   +     P+ GW E +  EI  +VQ+ +  A  +
Sbjct: 4   AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 62
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
               G+  + I  +GITNQRETTVVWD  TG+P+ NAIVW   ++  I DQ+     D  
Sbjct: 63  ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---DGH 116
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
            + +    GL +  YFSA K+ WL+ N+   +        LFGT+D+WLVW LT    HV
Sbjct: 117 TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHV 176
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH------------ 384
           TD +NASRTML NI  L+WD  +     +P ++LPE++S+SE+YG               
Sbjct: 177 TDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYHFYGSEVPIA 236
Query: 385 -----------------------------------------SNNGLVTTVAYQFGPDATP 403
                                                    S+N L+TT+ Y  G +   
Sbjct: 237 GMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKV 294
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
            YALEGSI VAG+A++WLRD L +++   ++E LA K     +VY VPAF GL APYW  
Sbjct: 295 YYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS 354
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           +ARG + G+T+ TTK   +RA L+A+ +Q++D+++
Sbjct: 355 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 389

>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase From A Hyperthermophilic Archaeon Length = 497

Iteration: 1
 Score =  253 bits (646), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 154/398 (38%), Positives = 213/398 (53%), Gaps = 76/398 (19%)
Query: 158 IDEGTRTVRFAI------ISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 211
           +DEGT + R  I      I  + Q E   H        P+ GW E +P EI  A    + 
Sbjct: 8   LDEGTTSARAIIFDRESNIHGIGQYEFPQHY-------PRPGWVEHNPEEIWDAQLRAIK 60
Query: 212 RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAK 271
            AI+  SA  +  + I  +G+TNQRETT+VWD + G+PLYNAIVW   R   +V+++  +
Sbjct: 61  DAIQ--SAR-IEPNQIAAIGVTNQRETTLVWDKD-GKPLYNAIVWQCRRTAEMVEEIKRE 116
Query: 272 FPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTG 331
           +       +K   GL    YFSA KL WL+ NV  +R   ++   +FGTVDT+L++ LTG
Sbjct: 117 YGTM----IKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDTFLIYRLTG 172
Query: 332 RTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS------ 385
              HVTD +NASRTML NI  L WD  L + F +P ++LPE+R SSE+YG          
Sbjct: 173 E--HVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEVRESSEVYGYTKKELLGAE 230
Query: 386 ---------------------------------------------NNGLVTTVAYQFGPD 400
                                                        ++ L+TT+A+  G +
Sbjct: 231 IPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKMVLYSDNLLTTIAW--GLN 288
Query: 401 ATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPY 460
               YALEGSI V GAAV+WLRD + ++ +  ETE LA K+ +   VYFVPAF GL APY
Sbjct: 289 GRVSYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESNEGVYFVPAFVGLGAPY 348
Query: 461 WRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           W + ARG+I G+T+ T + H+ RA LEAI + TRD+++
Sbjct: 349 WDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVD 386

>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Adp Length = 507

Iteration: 1
 Score =  245 bits (626), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 150/400 (37%), Positives = 211/400 (52%), Gaps = 70/400 (17%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDIS----TISPQEGWAEQDPMEILQAVQTTMDRA 213
           ID+ T++ +   +    +E  + HS +++     + P  GW E DP+EI+  +   M+  
Sbjct: 13  IDQSTQSTK---VFFYDEELNIVHSNNLNHEQKCLKP--GWYEHDPIEIMTNLYNLMNEG 67
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
           I+ L     S   I  +GITNQRET ++WD  TG+PLYNAIVW DTR + +V +  AK+ 
Sbjct: 68  IKVLKDKYTSVI-IKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYN 126
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
           + D   ++   G   + YFSA K+ WLIQN   +++ I +   + G ++TWL++NLT   
Sbjct: 127 NND---IQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGN 183
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCK------------------------------YF 363
           C+ TDVTNASRT+LM+I++LQWD  +CK                              Y 
Sbjct: 184 CY-TDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYL 242
Query: 364 AVPPTILPEIRSSSEI-------------YGK------------VHSNNGLVTTVAYQFG 398
            +P T     + S+ I             YG             V+S  GL+TT+ Y+F 
Sbjct: 243 NIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFN 302
Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
            +  P YALEGSI  AG+ V WL  N  L+D+  E   + EK   T  V FVPAF GLYA
Sbjct: 303 DNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCENTTGVIFVPAFSGLYA 361
Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           P WR DAR  I GMT  T + HI+RA LE I FQ  +I++
Sbjct: 362 PRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVD 401

>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Bound Glycerol Length = 503

Iteration: 1
 Score =  245 bits (625), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 150/400 (37%), Positives = 211/400 (52%), Gaps = 70/400 (17%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDIS----TISPQEGWAEQDPMEILQAVQTTMDRA 213
           ID+ T++ +   +    +E  + HS +++     + P  GW E DP+EI+  +   M+  
Sbjct: 9   IDQSTQSTK---VFFYDEELNIVHSNNLNHEQKCLKP--GWYEHDPIEIMTNLYNLMNEG 63
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
           I+ L     S   I  +GITNQRET ++WD  TG+PLYNAIVW DTR + +V +  AK+ 
Sbjct: 64  IKVLKDKYTSVI-IKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYN 122
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
           + D   ++   G   + YFSA K+ WLIQN   +++ I +   + G ++TWL++NLT   
Sbjct: 123 NND---IQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGN 179
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCK------------------------------YF 363
           C+ TDVTNASRT+LM+I++LQWD  +CK                              Y 
Sbjct: 180 CY-TDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYL 238
Query: 364 AVPPTILPEIRSSSEI-------------YGK------------VHSNNGLVTTVAYQFG 398
            +P T     + S+ I             YG             V+S  GL+TT+ Y+F 
Sbjct: 239 NIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFN 298
Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
            +  P YALEGSI  AG+ V WL  N  L+D+  E   + EK   T  V FVPAF GLYA
Sbjct: 299 DNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCENTTGVIFVPAFSGLYA 357
Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           P WR DAR  I GMT  T + HI+RA LE I FQ  +I++
Sbjct: 358 PRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVD 397

>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus Acidophilus Length = 504

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 150/393 (38%), Gaps = 76/393 (19%)
Query: 159 DEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLS 218
           D GT   +  ++  +  + V S S     I  + G AE+DP  I  AVQ  +    +K+ 
Sbjct: 10  DVGTTATK-GVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKID 68
Query: 219 AHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKD 278
                   I  +  ++Q  + +    +  E L N+I W+D  A +IV         +++ 
Sbjct: 69  GK------IAAISWSSQXHSLIGLGSDD-ELLTNSITWADNCAKSIVQDA------KNRG 115
Query: 279 YLKPI---CGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCH 335
           + + I    G P  P     KL WL    + V     + +   G +  ++++ LTG+   
Sbjct: 116 FAQQIYRKTGXPXHPXAPIYKLLWLKNKKTEV---FSQAQKWIG-IKEYIIFRLTGKL-- 169
Query: 336 VTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEI-------YGK------ 382
           VTD T A+ T ++N+ +L WD  L     +    LP+I   +++       Y K      
Sbjct: 170 VTDTTXAAGTGILNLKTLTWDQELLDILKIKKEQLPKIAQPTKVIFPIKTEYVKKLGIDS 229
Query: 383 -----VHSNNGLVTTV---------------------------------AYQFGPDATPI 404
                + +++G ++T+                                 +Y   P     
Sbjct: 230 DTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQPKIDPSASYFCYPADKTH 289
Query: 405 YALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTG--DVYFVPAFGGLYAPYWR 462
           Y L G +   G    W R  L   D   +      +    G  ++ F+P  GG  AP W 
Sbjct: 290 YLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAPIWD 349
Query: 463 KDARGVICGMTQFTTKGHIIRAALEAICFQTRD 495
            +ARG   G+T+   K    RA +E I F   D
Sbjct: 350 ANARGSFVGLTRXHQKPEXARAVIEGIIFNLYD 382

>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed With Xylulose Length = 484

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 157/396 (39%), Gaps = 75/396 (18%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTIS-PQEGWAEQDPMEILQAVQTTMDRAIEK 216
           ID GT  V+  +++   Q EVV+   +  T+S P   W+EQDP +  QA     DRA++ 
Sbjct: 5   IDLGTSGVKVILLN--EQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQAT----DRAMKA 58
Query: 217 LS-AHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQ 275
           L   H L   D+  LGI  Q     + D      L  AI+W+D R       + A+ P  
Sbjct: 59  LGDQHSLQ--DVKALGIAGQMHGATLLDAQQ-RVLRPAILWNDGRCAQECTLLEARVPQS 115
Query: 276 DKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCH 335
                + I G  + P F+A KL W+ ++   + R I  ++ L      +L   +TG    
Sbjct: 116 -----RVITGNLMMPGFTAPKLLWVQRHEPEIFRQI--DKVLL--PKDYLRLRMTGE--F 164
Query: 336 VTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEI---------------- 379
            +D+++A+ TM +++    W  ++ +   +    +P +   SEI                
Sbjct: 165 ASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMAT 224
Query: 380 ----------------YGKVHSNNGLVT-------------------TVAYQFGPDATPI 404
                            G V +N  +++                   +  + F       
Sbjct: 225 VPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQR 284
Query: 405 YALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGD-VYFVPAFGGLYAPYWRK 463
           + L   +  A + + W    L  + NV    + A++   + + V+F+P   G   P+   
Sbjct: 285 WHLMSVMLSAASCLDWAA-KLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNP 343
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499
            A+GV  G+T       + RA LE + +   D +++
Sbjct: 344 QAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDV 379

>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From Rhodospirillum Rubrum Length = 508

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 143/391 (36%), Gaps = 68/391 (17%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217
           +D GT T   AI+  L    V   S   +  SP  GWAE+DP +     +  +    E  
Sbjct: 12  LDIGT-TSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVL---AELK 67
Query: 218 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDK 277
           +  G S      + +T      V+ D + G  L  +I  SD R  + V ++ A+    D 
Sbjct: 68  TTAGESDWRPGGICVTGXLPAVVLLD-DRGAVLRPSIQQSDGRCGDEVAELRAEV---DS 123
Query: 278 DYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVT 337
           +      G  V+      KL W+ ++  +V  AI     + G+ D ++   LTG    V 
Sbjct: 124 EAFLARTGNGVTQQLVTAKLRWIERHEPAVFGAIA---TVCGSYD-YINXLLTGE--RVV 177
Query: 338 DVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTT----- 392
           D   A     +++ S   +  L     +PP+ +P    +  + G V +    +T      
Sbjct: 178 DRNWALEGGFIDLASGTVEADLVALAHIPPSAVPPAHPTHRVLGAVTAEAAALTGLPTGL 237
Query: 393 -----------------------VAYQFG-------PDATP---------------IYAL 407
                                  V  +FG         AT                +YA 
Sbjct: 238 PVYGGAADHIASALAAGITRPGDVLLKFGGAGDIIVASATAKSDPRLYLDYHLVPGLYAP 297
Query: 408 EGSIAVAGAAVKWLRDNLNLMDNVR---ETESLAEKVMTTGD-VYFVPAFGGLYAPYWRK 463
            G  A  G+A+ WL   L          + ++LA +V    D +  +P F G   P    
Sbjct: 298 NGCXAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFLGEKTPIHDP 357
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTR 494
            A G   G++   T+GH+ RA LEA+    R
Sbjct: 358 FASGTFTGLSLSHTRGHLWRALLEAVALAFR 388

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	500
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	1e-167
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	1e-29
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	1e-164
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	2e-27
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	1e-161
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	2e-27
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	1e-161
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	2e-27
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	1e-161
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	2e-27
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	1e-161
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	2e-27
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	1e-159
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	4e-27
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	1e-155
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	1e-25
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	7e-95
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	2e-19
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	8e-79
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	4e-12
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	1e-65
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	1e-14
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	1e-61
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	3e-13
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	4e-61
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	6e-12
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	6e-40
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	5e-08
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	9e-33
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	1e-14
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	3e-11
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	5e-31
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	6e-16
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	1e-09
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	2e-27
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Length = 503

 Score =  482 bits (1242), Expect = e-167
 Identities = 146/399 (36%), Positives = 206/399 (51%), Gaps = 62/399 (15%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           I  ID+ T++ +           V S++++      + GW E DP+EI+  +   M+  I
Sbjct: 6   ILSIDQSTQSTK-VFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGI 64

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
           + L     +   I  +GITNQRET ++WD  TG+PLYNAIVW DTR + +V +  A    
Sbjct: 65  KVLKD-KYTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSA---K 120

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
            + + ++   G   + YFSA K+ WLIQN   +++ I +   + G ++TWL++NLT    
Sbjct: 121 YNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGN- 179

Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPT-ILPEIRSSSEI-------------- 379
             TDVTNASRT+LM+I++LQWD  +CK F +    +LPEI+S+                 
Sbjct: 180 CYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLN 239

Query: 380 ----------------------------YG------------KVHSNNGLVTTVAYQFGP 399
                                       YG             V+S  GL+TT+ Y+F  
Sbjct: 240 IPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFND 299

Query: 400 DATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAP 459
           +  P YALEGSI  AG+ V WL  N  L+D+  E   + EK   T  V FVPAF GLYAP
Sbjct: 300 NDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAP 358

Query: 460 YWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
            WR DAR  I GMT  T + HI+RA LE I FQ  +I++
Sbjct: 359 RWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVD 397

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Length = 503

 Score =  120 bits (303), Expect = 1e-29
 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
           I  ID+ T++ +           V S++++      + GW E DP+EI+  +   M+  I
Sbjct: 6   ILSIDQSTQSTK-VFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGI 64

Query: 86  EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
           + L     +   I  +GITNQRET ++WD  TG+PLYNAI
Sbjct: 65  KVLKD-KYTSVIIKCIGITNQRETVIIWDRITGKPLYNAI 103

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Length = 504

 Score =  472 bits (1218), Expect = e-164
 Identities = 165/399 (41%), Positives = 228/399 (57%), Gaps = 63/399 (15%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           +  ID+GT + R AI+   + E   +  ++   I P+ GW E +P +I   V+  +  A+
Sbjct: 4   VLAIDQGTTSSR-AIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLAL 62

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
            +     L+ +DI  +GITNQRET VVWD  TG+P+YNAIVW DTR   IVD++     D
Sbjct: 63  TR---GNLTHEDIAAVGITNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDELGG---D 116

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT- 333
           +  +  K I GLP++ YFS  K+ W++ NV   R   ++   LFG  DTW++WN+TG T 
Sbjct: 117 EGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWNMTGGTE 176

Query: 334 --CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK--------- 382
              HVTDVTNASRTMLM++D+L W   +     +P ++LP+IRSSSE+YG          
Sbjct: 177 GGVHVTDVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPDIRSSSEVYGHGRPRGLVPG 236

Query: 383 -------------------------------------------VHSNNGLVTTVAYQFGP 399
                                                      V S NGL+TTV Y+ G 
Sbjct: 237 VPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIG- 295

Query: 400 DATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAP 459
           DA  +YALEGSIAV G+ V+WLRDNL + ++  + E LA KV   G  YFVPAF GL+AP
Sbjct: 296 DAPAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLFAP 355

Query: 460 YWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           YWR DARG + G+T++  + HI RAALEA  FQ+R++++
Sbjct: 356 YWRPDARGALVGLTRYVNRNHIARAALEATAFQSREVVD 394

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Length = 504

 Score =  114 bits (287), Expect = 2e-27
 Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 4/100 (4%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
           +  ID+GT + R AI+   + E   +  ++   I P+ GW E +P +I   V+  +  A+
Sbjct: 4   VLAIDQGTTSSR-AIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLAL 62

Query: 86  EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
            +     L+ +DI  +GITNQRET VVWD  TG+P+YNAI
Sbjct: 63  TR---GNLTHEDIAAVGITNQRETAVVWDKTTGKPVYNAI 99

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Length = 506

 Score =  465 bits (1200), Expect = e-161
 Identities = 143/397 (36%), Positives = 209/397 (52%), Gaps = 62/397 (15%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           +  ID+GT + R AII     +++ S   +     P+ GW E +  EI  +VQ+ +  A 
Sbjct: 7   VMAIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 65

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
            +    G+  + I  +GITNQRETTVVWD  TG+P+ NAIVW   ++  I DQ+     D
Sbjct: 66  IE---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---D 119

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
              + +    GL +  YFSA K+ WL+ N+   +        LFGT+D+WLVW LT    
Sbjct: 120 GHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQV 179

Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------------ 382
           HVTD +NASRTML NI  L+WD  +     +P ++LPE++S+SE+YG             
Sbjct: 180 HVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYRFYGSEVP 239

Query: 383 -----------------------------------------VHSNNGLVTTVAYQFGPDA 401
                                                      S+N L+TT+ Y    + 
Sbjct: 240 IAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGI--NG 297

Query: 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYW 461
              YALEGSI VAG+A++WLRD L +++   ++E LA K     +VY VPAF GL APYW
Sbjct: 298 KVYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYW 357

Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
             +ARG + G+T+ TTK   +RA L+A+ +Q++D+++
Sbjct: 358 DSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 394

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Length = 506

 Score =  114 bits (287), Expect = 2e-27
 Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 4/100 (4%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
           +  ID+GT + R AII     +++ S   +     P+ GW E +  EI  +VQ+ +  A 
Sbjct: 7   VMAIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 65

Query: 86  EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
            +    G+  + I  +GITNQRETTVVWD  TG+P+ NAI
Sbjct: 66  IE---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAI 102

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} Length = 520

 Score =  465 bits (1200), Expect = e-161
 Identities = 158/396 (39%), Positives = 205/396 (51%), Gaps = 61/396 (15%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           I  ID+GT + R AI+    Q+       +     P+ GW E DP EI Q V +T+  AI
Sbjct: 28  ILAIDQGTTSTR-AIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAI 86

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
           EK    G++ +DI  +GITNQRET VVWD  TG+P++NAIVW D R     D++      
Sbjct: 87  EK---SGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKK---K 140

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
             +       GL + PYFS  KL+WL+ NV   +    +    FGT+DT+L+W LTG  C
Sbjct: 141 GLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGEC 200

Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------------ 382
             TD TNASRT+L NI    WD  L +   VP  +LPE++  +  +G             
Sbjct: 201 FCTDATNASRTLLYNIAENAWDDELTEVLRVPKEMLPEVKDCAADFGVTDPSLFGAAIPI 260

Query: 383 ----------------------------------------VHSNNGLVTTVAYQFGPDAT 402
                                                   V S N L+TT+AY+   D  
Sbjct: 261 LGVAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRL--DGE 318

Query: 403 PIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWR 462
             YALEGSI VAGAAV+WLRD L ++    +T SLAE    + +VY VPAF GL AP+W 
Sbjct: 319 TTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWD 378

Query: 463 KDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
            DARG I GMT+ T      RAALEA+C+QTRD+LE
Sbjct: 379 PDARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLE 414

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} Length = 520

 Score =  114 bits (287), Expect = 2e-27
 Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 4/100 (4%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
           I  ID+GT + R AI+    Q+       +     P+ GW E DP EI Q V +T+  AI
Sbjct: 28  ILAIDQGTTSTR-AIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAI 86

Query: 86  EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
           EK    G++ +DI  +GITNQRET VVWD  TG+P++NAI
Sbjct: 87  EK---SGITANDIAAIGITNQRETVVVWDRETGKPIHNAI 123

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Length = 501

 Score =  465 bits (1198), Expect = e-161
 Identities = 151/397 (38%), Positives = 212/397 (53%), Gaps = 62/397 (15%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           I  ID+GT + R AI+     E       +     PQ GW E D  EI  +V   M   I
Sbjct: 8   ILSIDQGTTSSR-AILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVI 66

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
            +   + +  D I  +GITNQRETTVVWD +TG P+Y+AIVW   +  +I  ++      
Sbjct: 67  NE---NDVRADQIAGIGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSELKQ---Q 120

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
             +   +   GL + PYF+  K+ W++ NV   R   +    LFGT+DTWLVW L+G+  
Sbjct: 121 GYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVWKLSGKAA 180

Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------------ 382
           H+TD +NASRT++ NI  L+WD  L +   VP  +LPE+++SSE+YGK            
Sbjct: 181 HITDYSNASRTLMFNIHDLEWDDELLELLTVPKNMLPEVKASSEVYGKTIDYHFYGQEVP 240

Query: 383 -----------------------------------------VHSNNGLVTTVAYQFGPDA 401
                                                    V S +GL+TT+AY    D 
Sbjct: 241 IAGVAGDQQAALFGQACFERGDVKNTYGTGGFMLMNTGDKAVKSESGLLTTIAYGI--DG 298

Query: 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYW 461
              YALEGSI V+G+A++WLRD L ++++  ++ES A +V +T  VY VPAF GL  PYW
Sbjct: 299 KVNYALEGSIFVSGSAIQWLRDGLRMINSAPQSESYATRVDSTEGVYVVPAFVGLGTPYW 358

Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
             +ARG I G+T+ T K H IRA LE++C+QTRD++E
Sbjct: 359 DSEARGAIFGLTRGTEKEHFIRATLESLCYQTRDVME 395

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Length = 501

 Score =  113 bits (286), Expect = 2e-27
 Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
           I  ID+GT + R AI+     E       +     PQ GW E D  EI  +V   M   I
Sbjct: 8   ILSIDQGTTSSR-AILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVI 66

Query: 86  EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
            +   + +  D I  +GITNQRETTVVWD +TG P+Y+AI
Sbjct: 67  NE---NDVRADQIAGIGITNQRETTVVWDKHTGRPIYHAI 103

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Length = 495

 Score =  460 bits (1187), Expect = e-159
 Identities = 149/396 (37%), Positives = 205/396 (51%), Gaps = 62/396 (15%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           +  +D+GT + R AI+  L    V     +   + P+ GW E DP+EI +         +
Sbjct: 4   LLALDQGTTSSR-AILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVL 62

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
            +    G    +++ LGITNQRETT++WD  TG+PL+NAIVW D R   + + + A    
Sbjct: 63  RR---AGAEAGEVLALGITNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRA---K 116

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
             +   +   GL   PYFS  KL WL++NV  ++   +     FGTVDTWL+WNLTG   
Sbjct: 117 GLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVDTWLIWNLTGGKV 176

Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------------ 382
           H TD TNASRT+L N+ +L WDP L +   +P  +LPE+R S   +G+            
Sbjct: 177 HATDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPSDGDFGETLPELLGAPVPI 236

Query: 383 ----------------------------------------VHSNNGLVTTVAYQFGPDAT 402
                                                   V S  GL+ TVA+  G    
Sbjct: 237 RGVLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLG--GR 294

Query: 403 PIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWR 462
             YALEGS+ VAGAAV WL++ + L+    E E+LA  V  TGDVYFVPAF GL APYW 
Sbjct: 295 ATYALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVEDTGDVYFVPAFTGLGAPYWD 353

Query: 463 KDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
             ARG + G+T+ T++ H+ RAALE + FQ RD++ 
Sbjct: 354 PYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVL 389

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Length = 495

 Score =  113 bits (284), Expect = 4e-27
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
           +  +D+GT + R AI+  L    V     +   + P+ GW E DP+EI +         +
Sbjct: 4   LLALDQGTTSSR-AILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVL 62

Query: 86  EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
            +    G    +++ LGITNQRETT++WD  TG+PL+NAI
Sbjct: 63  RR---AGAEAGEVLALGITNQRETTLLWDRKTGKPLHNAI 99

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} Length = 497

 Score =  450 bits (1159), Expect = e-155
 Identities = 149/395 (37%), Positives = 207/395 (52%), Gaps = 64/395 (16%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           +  +DEGT + R AII             +     P+ GW E +P EI  A    +  AI
Sbjct: 5   VLSLDEGTTSAR-AIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAI 63

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
           +      +  + I  +G+TNQRETT+VWD   G+PLYNAIVW   R   +V++ + +   
Sbjct: 64  QS---ARIEPNQIAAIGVTNQRETTLVWD-KDGKPLYNAIVWQCRRTAEMVEE-IKR--- 115

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
           +    +K   GL    YFSA KL WL+ NV  +R   ++   +FGTVDT+L++ LTG   
Sbjct: 116 EYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDTFLIYRLTGE-- 173

Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN-------- 386
           HVTD +NASRTML NI  L WD  L + F +P ++LPE+R SSE+YG             
Sbjct: 174 HVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEVRESSEVYGYTKKELLGAEIPV 233

Query: 387 -------------------------------------------NGLVTTVAYQFGPDATP 403
                                                      + L+TT+A+    +   
Sbjct: 234 SGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKMVLYSDNLLTTIAWGL--NGRV 291

Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
            YALEGSI V GAAV+WLRD + ++ +  ETE LA K+ +   VYFVPAF GL APYW +
Sbjct: 292 SYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESNEGVYFVPAFVGLGAPYWDQ 351

Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
            ARG+I G+T+ T + H+ RA LEAI + TRD+++
Sbjct: 352 FARGIIIGITRGTGREHLARATLEAIAYLTRDVVD 386

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} Length = 497

 Score =  108 bits (273), Expect = 1e-25
 Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
           +  +DEGT + R AII             +     P+ GW E +P EI  A    +  AI
Sbjct: 5   VLSLDEGTTSAR-AIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAI 63

Query: 86  EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
           +      +  + I  +G+TNQRETT+VWD   G+PLYNAI
Sbjct: 64  QS---ARIEPNQIAAIGVTNQRETTLVWD-KDGKPLYNAI 99

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Length = 504

 Score =  296 bits (759), Expect = 7e-95
 Identities = 87/398 (21%), Positives = 149/398 (37%), Gaps = 71/398 (17%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           +IG +D GT   +  ++  +  + V S S     I  + G AE+DP  I  AVQ  +   
Sbjct: 6   IIG-MDVGTTATK-GVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDL 63

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
            +K          I  +  ++Q  + +    +  E L N+I W+D  A +IV     +  
Sbjct: 64  TQK------IDGKIAAISWSSQMHSLIGLGSD-DELLTNSITWADNCAKSIVQDAKNRGF 116

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
                 +    G+P+ P     KL WL    + V    +     +  +  ++++ LTG+ 
Sbjct: 117 ---AQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVFSQAQ----KWIGIKEYIIFRLTGK- 168

Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK----------- 382
             VTD T A+ T ++N+ +L WD  L     +    LP+I   +++              
Sbjct: 169 -LVTDTTMAAGTGILNLKTLTWDQELLDILKIKKEQLPKIAQPTKVIFPIKTEYVKKLGI 227

Query: 383 ----------------------VHSNNGLVT--------TVAYQFGPD--------ATP- 403
                                 + S++  +         T+  Q   D            
Sbjct: 228 DSDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQPKIDPSASYFCYPADK 287

Query: 404 -IYALEGSIAVAGAAVKWLRDNLNLMDN-VRETESLAEKVMT-TGDVYFVPAFGGLYAPY 460
             Y L G +   G    W R  L   D   ++   +A+     + ++ F+P  GG  AP 
Sbjct: 288 THYLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAPI 347

Query: 461 WRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
           W  +ARG   G+T+   K  + RA +E I F   D   
Sbjct: 348 WDANARGSFVGLTRMHQKPEMARAVIEGIIFNLYDAAS 385

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Length = 504

 Score = 90.0 bits (224), Expect = 2e-19
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
           +IG +D GT   +  ++  +  + V S S     I  + G AE+DP  I  AVQ  +   
Sbjct: 6   IIG-MDVGTTATK-GVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDL 63

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
            +K          I  +  ++Q  + +    +  E L N+I
Sbjct: 64  TQK------IDGKIAAISWSSQMHSLIGLGSD-DELLTNSI 97

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Length = 489

 Score =  253 bits (649), Expect = 8e-79
 Identities = 49/398 (12%), Positives = 117/398 (29%), Gaps = 79/398 (19%)

Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDIS----TISPQEGWAEQDPMEILQAVQTTMDRA 213
           +D G  + R  +++   +E       +I      +  Q G+   D   +  A++  +++ 
Sbjct: 9   VDLGASSGR-VMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKV 67

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
                    +   I ++GI       V+ D   G+ +   + + D+R + ++ Q   +  
Sbjct: 68  -------CAAGIAIDSIGIDTWGVDFVLLDQQ-GQRVGLPVAYRDSRTNGLMAQAQQQLG 119

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
              K  +    G+   P+ +  +L  L +    +   I         +  +  + LTG+ 
Sbjct: 120 ---KRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAH----ALLMPDYFSYRLTGK- 171

Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH--------- 384
               + TNA+ T L+NI+S  WD  L  +                + G            
Sbjct: 172 -MNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPV 230

Query: 385 ------------------------------------------SNNGLVTTVAYQFGPDAT 402
                                                     ++  L   +  + G +  
Sbjct: 231 VAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGR 290

Query: 403 PIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFV--PAFGGLYAPY 460
             Y +  +I       + L++     +++    +  + +     +       F       
Sbjct: 291 --YRVLKNIMGLWLLQRVLQERQI--NDLPALIAATQALPACRFIINPNDDRFINPDEMC 346

Query: 461 WRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
               A           +   + R   +++     D+L 
Sbjct: 347 SEIQAACREMAQPIPESDAELARCIFDSLALLYADVLH 384

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Length = 489

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 29  IDEGTRTVRFAIISALTQEEVVSHSMDIS----TISPQEGWAEQDPMEILQAVQTTMDRA 84
           +D G  + R  +++   +E       +I      +  Q G+   D   +  A++  +++ 
Sbjct: 9   VDLGASSGR-VMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKV 67

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
                    +   I ++GI       V+ D   G+ +   +
Sbjct: 68  -------CAAGIAIDSIGIDTWGVDFVLLDQQ-GQRVGLPV 100

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} Length = 508

 Score =  219 bits (560), Expect = 1e-65
 Identities = 81/401 (20%), Positives = 131/401 (32%), Gaps = 69/401 (17%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           +IG +D GT +   AI+  L    V   S   +  SP  GWAE+DP +     +  +   
Sbjct: 9   VIG-LDIGTTSTI-AILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAEL 66

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
                  G S      + +T      V+ D   G  L  +I  SD R  + V ++ A+  
Sbjct: 67  KTT---AGESDWRPGGICVTGMLPAVVLLDDR-GAVLRPSIQQSDGRCGDEVAELRAEVD 122

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
            +         G  V+      KL W+ ++  +V  AI            ++   LTG  
Sbjct: 123 SEA---FLARTGNGVTQQLVTAKLRWIERHEPAVFGAIA----TVCGSYDYINMLLTGE- 174

Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN------- 386
             V D   A     +++ S   +  L     +PP+ +P    +  + G V +        
Sbjct: 175 -RVVDRNWALEGGFIDLASGTVEADLVALAHIPPSAVPPAHPTHRVLGAVTAEAAALTGL 233

Query: 387 ----------------------------------NGLVTTVAYQFGPD--------ATP- 403
                                              G +   +     D          P 
Sbjct: 234 PTGLPVYGGAADHIASALAAGITRPGDVLLKFGGAGDIIVASATAKSDPRLYLDYHLVPG 293

Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTT----GDVYFVPAFGGLYAP 459
           +YA  G +A  G+A+ WL   L           L             +  +P F G   P
Sbjct: 294 LYAPNGCMAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFLGEKTP 353

Query: 460 YWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
                A G   G++   T+GH+ RA LEA+    R  + + 
Sbjct: 354 IHDPFASGTFTGLSLSHTRGHLWRALLEAVALAFRHHVAVL 394

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} Length = 508

 Score = 75.3 bits (186), Expect = 1e-14
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
           +IG +D GT +   AI+  L    V   S   +  SP  GWAE+DP +     +  +   
Sbjct: 9   VIG-LDIGTTSTI-AILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAEL 66

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
                  G S      + +T      V+ D   G  L  +I
Sbjct: 67  KTT---AGESDWRPGGICVTGMLPAVVLLDDR-GAVLRPSI 103

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511

 Score =  208 bits (532), Expect = 1e-61
 Identities = 73/407 (17%), Positives = 125/407 (30%), Gaps = 75/407 (18%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           +    D GT  V+ A ++          S+ + T     G  EQD  +   AVQ      
Sbjct: 7   IAT-FDIGTTEVK-AALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQR----I 60

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
                  G+    +  + ++ Q +  +  D +  EPL+ A+++SD R     +++ A+  
Sbjct: 61  ASSWWQSGVDARRVSAIVLSGQMQNFLPLDQD-HEPLHRAVLYSDKRPLKEAEEINARHG 119

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
             +   L      P++      KL +   +       +   R +      ++V  LTGR 
Sbjct: 120 ADN---LWSALENPMTAASILPKLVFWRASFPQAFGRL---RHVVLGAKDYVVLRLTGR- 172

Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK----------- 382
            H TD TNAS T L       W   L   +     ++P +    E  G            
Sbjct: 173 -HATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQVGGVSALAARQTGF 231

Query: 383 ----------------------VHSNNGLVT----------TVAYQFGPD---------- 400
                                 +   +  +           T     G            
Sbjct: 232 VSGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAG 291

Query: 401 ATP-IYALEGSIAVAGAAVKWLRDNL--NLMDNVRETESLAEKVMTT----GDVYFVPAF 453
                      +  AG  ++W    +     ++  E   +A   +        + FVP  
Sbjct: 292 IIAGKTLQVAPVLNAGNILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTVPDGLLFVPYL 351

Query: 454 GGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
                P      RG + G+T  TT+  I+ A LE      R   EL 
Sbjct: 352 HAERCPVELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELL 398

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
           +    D GT  V+ A ++          S+ + T     G  EQD  +   AVQ      
Sbjct: 7   IAT-FDIGTTEVK-AALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQR----I 60

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
                  G+    +  + ++ Q +  +  D +  EPL+ A+
Sbjct: 61  ASSWWQSGVDARRVSAIVLSGQMQNFLPLDQD-HEPLHRAV 100

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484

 Score =  206 bits (527), Expect = 4e-61
 Identities = 81/399 (20%), Positives = 144/399 (36%), Gaps = 72/399 (18%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
            IG ID GT  V+  I+     E V + +  ++   P   W+EQDP +  QA    M   
Sbjct: 2   YIG-IDLGTSGVK-VILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKAL 59

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
            ++ S       D+  LGI  Q     + D      L  AI+W+D R       + A+ P
Sbjct: 60  GDQHSL-----QDVKALGIAGQMHGATLLDAQ-QRVLRPAILWNDGRCAQECTLLEARVP 113

Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
                    I G  + P F+A KL W+ ++   + R I            +L   +TG  
Sbjct: 114 QSRV-----ITGNLMMPGFTAPKLLWVQRHEPEIFRQID----KVLLPKDYLRLRMTGE- 163

Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN------- 386
              +D+++A+ TM +++    W  ++ +   +    +P +   SEI G +          
Sbjct: 164 -FASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGM 222

Query: 387 ---------------------------------NGLVTTVAYQFGPDATPI--------- 404
                                            +G+   V+  F                
Sbjct: 223 ATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALP 282

Query: 405 --YALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGD-VYFVPAFGGLYAPYW 461
             + L   +  A + + W       + NV    + A++   + + V+F+P   G   P+ 
Sbjct: 283 QRWHLMSVMLSAASCLDWAAKLTG-LSNVPALIAAAQQADESAEPVWFLPYLSGERTPHN 341

Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
              A+GV  G+T       + RA LE + +   D +++ 
Sbjct: 342 NPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVV 380

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484

 Score = 66.5 bits (163), Expect = 6e-12
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
            IG ID GT  V+  I+     E V + +  ++   P   W+EQDP +  QA    M   
Sbjct: 2   YIG-IDLGTSGVK-VILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKAL 59

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
            ++ S       D+  LGI  Q     + D      L  AI
Sbjct: 60  GDQHSL-----QDVKALGIAGQMHGATLLDAQ-QRVLRPAI 94

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515

 Score =  150 bits (380), Expect = 6e-40
 Identities = 74/434 (17%), Positives = 129/434 (29%), Gaps = 111/434 (25%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
           + G +D  T++ +  +  A T E V          +        DP     A Q   ++A
Sbjct: 7   VAG-VDTSTQSCKVRVTDAETGELVRFGQ------AKHPNGTSVDPSYWWSAFQEAAEQA 59

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
                      DD+  L +  Q+   V+ D   G  + +A++W+DT +      ++ K  
Sbjct: 60  GGL--------DDVSALAVGGQQHGMVILDNQ-GNVIRDAMLWNDTSSAPQAAALIEKLG 110

Query: 274 DQDKDYLKP-------------ICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGT 320
                  +P               G      ++  K++W+ +N     + I     +   
Sbjct: 111 AAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVAWVAENEPENVKKI---AAICLP 167

Query: 321 VDTWLVWNLTGRTCH-----------VTDVTNASRTMLMNIDSLQWDPLLCKYFAV---- 365
            D WL W + G                TD ++AS T+  +  S ++   L          
Sbjct: 168 HD-WLSWRIAGYGPVAEGEDAHLEALFTDRSDASGTIYYDAASNEYRRDLIAMVLEAAEG 226

Query: 366 --------PPTILPEIRSSSEIYGKVHS-------------------NN----------- 387
                      +LP +    +                          +N           
Sbjct: 227 AKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNVEGGCLLAPGGGDNAMASLGLGMAV 286

Query: 388 ----------GLVTTVAYQFGPD----------ATPIYALEGSIAVAGAAVKWLRDNLNL 427
                     G+   ++     D           T  Y            +   R  L +
Sbjct: 287 GDVSISLGTSGVAAAISENPTYDLTGAVSGFADCTGHYLPLACTINGSRILDAGRAALGV 346

Query: 428 MDNVRETESLAEKVMTTGD-VYFVPAFGGLYAPYWRKDARGVICGMTQF-TTKGHIIRAA 485
             +  E   LA       + +  VP F G   P  R +A     GMT   TT+ ++ RA 
Sbjct: 347 --DYDELAKLAFASKPGANGITLVPYFDGERTP-NRPNATATFSGMTLANTTRENLARAF 403

Query: 486 LEAICFQTRDILEL 499
           +E +    RD LEL
Sbjct: 404 VEGLLCSQRDCLEL 417

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
           + G +D  T++ +  +  A T E V          +        DP     A Q   ++A
Sbjct: 7   VAG-VDTSTQSCKVRVTDAETGELVRFGQ------AKHPNGTSVDPSYWWSAFQEAAEQA 59

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
                      DD+  L +  Q+   V+ D   G  + +A+
Sbjct: 60  GGL--------DDVSALAVGGQQHGMVILDNQ-GNVIRDAM 91

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Length = 554

 Score =  130 bits (328), Expect = 9e-33
 Identities = 62/277 (22%), Positives = 97/277 (35%), Gaps = 35/277 (12%)

Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
            IG +D GT + R A +  L    V   S +I+   P+  + EQ    I QAV   +  A
Sbjct: 7   FIG-VDVGTGSAR-AGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDA 64

Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL---------YNAIVWSDTRADNI 264
           + +     ++   +  LG      + VV D   G PL          N IVW D RA   
Sbjct: 65  VNQ---ADINPIQVKGLGFDATC-SLVVLDKE-GNPLTVSPSGRNEQNVIVWMDHRAITQ 119

Query: 265 VDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTW 324
            +++     +  K  +    G  +SP     KL WL Q+          N      +  +
Sbjct: 120 AERI-----NATKHPVLEFVGGVISPEMQTPKLLWLKQH----MPNTWSNVGHLFDLPDF 170

Query: 325 LVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTI---LPEIRSSSEIYG 381
           L W  T        + +            +WDP   K   +   +     +I ++ +  G
Sbjct: 171 LTWRATKD--ETRSLCSTVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGATVKPMG 228

Query: 382 KVHSNNGLVTTVAYQFG-PDATPIYALEGSI-AVAGA 416
                +GL    A + G    T +      I A AG 
Sbjct: 229 APLG-HGLSQRAASEMGLIPGTAVSV--SIIDAHAGT 262

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Length = 554

 Score = 75.4 bits (186), Expect = 1e-14
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 23/117 (19%)

Query: 405 YALEGSIAVAGAAVKWLRDNLNLMDNVRET---------ESLAEKVMT-----------T 444
           +  EG  +  GA +  +  +      + E          E+L   +             T
Sbjct: 318 WLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEPENIAFLT 377

Query: 445 GDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHII---RAALEAICFQTRDILE 498
            D++ +P F G  +P    +  G+I G+   TT   +     A ++A+   TR I+E
Sbjct: 378 NDIHMLPYFHGNRSPRANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIE 434

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Length = 554

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 25  LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
            IG +D GT + R A +  L    V   S +I+   P+  + EQ    I QAV   +  A
Sbjct: 7   FIG-VDVGTGSAR-AGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDA 64

Query: 85  IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL 121
           + +     ++   +  LG      + VV D   G PL
Sbjct: 65  VNQ---ADINPIQVKGLGFDATC-SLVVLDKE-GNPL 96

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} Length = 482

 Score =  113 bits (285), Expect = 2e-27
 Identities = 35/266 (13%), Positives = 73/266 (27%), Gaps = 40/266 (15%)

Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
           VID G    + ++        +       S     +G    D  +  + +   + R  + 
Sbjct: 10  VIDLGKTLSKVSLWDL-DGRMLDRQVRP-SIPLEIDGIRRLDAPDTGRWLLDVLSRYADH 67

Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
                     + T+                G   +  + +  +  + ++    ++     
Sbjct: 68  ---------PVTTIVPVGHGAGIAALT--DGRLAFPPLDYEQSIPEAVMADYRSQRDPFA 116

Query: 277 KDYLKPICGLPVSPYF--SALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
                   G P  P       +L WL Q    V                +  W LTGR  
Sbjct: 117 ------RTGSPALPDGLNIGSQLWWLDQLHPDVMANAT-----LLPWAQYWAWFLTGR-- 163

Query: 335 HVTDVTNAS-RTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTV 393
            V++VT+    + L +     + P+  +           I  + +  G +         +
Sbjct: 164 AVSEVTSLGCHSDLWDPQDGDFSPMAKRLG--WAARFAPIVRAGDTVGALLPA------I 215

Query: 394 AYQFG-PDATPIYALEGSIAVAGAAV 418
           A + G      + A  G      A +
Sbjct: 216 AERTGLSPDVQVLA--GLHDSNAALL 239

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} Length = 482

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 13/99 (13%)

Query: 28  VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87
           VID G    + ++        +       S     +G    D  +  + +   + R  + 
Sbjct: 10  VIDLGKTLSKVSLWDL-DGRMLDRQVRP-SIPLEIDGIRRLDAPDTGRWLLDVLSRYADH 67

Query: 88  LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAID 126
                     + T+                G   +  +D
Sbjct: 68  ---------PVTTIVPVGHGAGIAALT--DGRLAFPPLD 95

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 4e-10
 Identities = 75/434 (17%), Positives = 135/434 (31%), Gaps = 121/434 (27%)

Query: 52  HSMDISTISPQEGWAEQDPMEI-LQAVQTTMD-RAIEKLSAHGLSR---DDIVTLGITNQ 106
           H MD  T   Q  +  +D + +   A     D + ++ +    LS+   D I+       
Sbjct: 5   HHMDFETGEHQYQY--KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 107 RETTVVWDL-NTGEP----------------LYNAI---DKMPSLV---YNTPPEPSSNT 143
               + W L +  E                 L + I    + PS++   Y    +   N 
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 144 NNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEIL 203
           N    +  V       +    +R A++     + V+   +         G  +      +
Sbjct: 123 NQVFAKYNVS----RLQPYLKLRQALLELRPAKNVLIDGV--------LGSGKT----WV 166

Query: 204 QAVQTTMDRAIEKLSAHGLSRDDI--VTLGITNQRETTVVWDLNTGEPLYNAIVWSDT-R 260
            A+   +   ++           I  + L   N    TV+  L     L   I  + T R
Sbjct: 167 -ALDVCLSYKVQCKMDFK-----IFWLNLKNCN-SPETVLEMLQK---LLYQIDPNWTSR 216

Query: 261 ADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLI-QNVSSVRRAIK--ENRCL 317
           +D+  +  L       +  L+ +  L   PY + L    L+  NV +  +A       C 
Sbjct: 217 SDHSSNIKLRI--HSIQAELRRL--LKSKPYENCL----LVLLNVQN-AKAWNAFNLSC- 266

Query: 318 FGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQW-------DPLLCKYFAVPPTIL 370
                  L+   T R   VTD  +A+ T  +++D             LL KY    P  L
Sbjct: 267 -----KILL---TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 371 PEIRSSSEIYGKVHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDN 430
           P          +V + N                       +++   +   +RD L   DN
Sbjct: 319 PR---------EVLTTNPRR--------------------LSIIAES---IRDGLATWDN 346

Query: 431 VRETESLAEKVMTT 444
            +      +K+ T 
Sbjct: 347 WKHVNC--DKLTTI 358

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	500
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	100.0
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	100.0
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	100.0
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	100.0
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	100.0
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	100.0
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	100.0
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	100.0
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	100.0
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	100.0
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	100.0
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	100.0
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	100.0
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	100.0
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	100.0
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	100.0
4bc3_A	538	Xylulose kinase; transferase, glucuronate xyluloki	100.0
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	100.0
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	100.0
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	99.88
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	99.82
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	99.81
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	99.81
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	99.81
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	99.81
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	99.81
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	99.79
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	99.79
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	99.78
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	99.77
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	99.75
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	99.75
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	99.75
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	99.75
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	99.73
4bc3_A	538	Xylulose kinase; transferase, glucuronate xyluloki	99.71
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	99.7
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	99.68
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	98.53
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	98.42
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	98.34
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	98.3
1z05_A	429	Transcriptional regulator, ROK family; structural	98.3
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	98.26
2ch5_A	347	NAGK protein; transferase, N-acetylglucosamine, gl	98.25
1z05_A	429	Transcriptional regulator, ROK family; structural	98.21
4db3_A	327	Glcnac kinase, N-acetyl-D-glucosamine kinase; stru	98.21
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	98.14
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	98.14
2yhw_A	343	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N	98.14
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	98.14
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	98.14
4db3_A	327	Glcnac kinase, N-acetyl-D-glucosamine kinase; stru	98.09
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	98.09
2yhw_A	343	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N	98.03
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	98.0
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	97.92
2e2o_A	299	Hexokinase; acetate and sugar kinases, HSP70, acti	97.86
3htv_A	310	D-allose kinase, allokinase; NP_418508.1, structur	97.84
3htv_A	310	D-allose kinase, allokinase; NP_418508.1, structur	97.82
2ch5_A	347	NAGK protein; transferase, N-acetylglucosamine, gl	97.79
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	97.74
2ap1_A	327	Putative regulator protein; zinc binding protein,	97.71
4htl_A	297	Beta-glucoside kinase; structural genomics, sugar	97.64
3vov_A	302	Glucokinase, hexokinase; ROK, sugar kinase, transf	97.62
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	97.59
4htl_A	297	Beta-glucoside kinase; structural genomics, sugar	97.55
3vov_A	302	Glucokinase, hexokinase; ROK, sugar kinase, transf	97.52
3epq_A	302	Putative fructokinase; SCRK, ADP binding, PSI2, MC	97.49
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	97.45
3epq_A	302	Putative fructokinase; SCRK, ADP binding, PSI2, MC	97.41
2ap1_A	327	Putative regulator protein; zinc binding protein,	97.37
3mcp_A	366	Glucokinase; structural genomics, joint center for	97.33
1woq_A	267	Inorganic polyphosphate/ATP-glucomannokinase; tran	97.31
2aa4_A	289	Mannac kinase, putative N-acetylmannosamine kinase	97.29
3mcp_A	366	Glucokinase; structural genomics, joint center for	97.23
2e2o_A	299	Hexokinase; acetate and sugar kinases, HSP70, acti	97.22
2yhx_A	457	Hexokinase B; transferase(phosphoryl,alcohol accep	97.21
2aa4_A	289	Mannac kinase, putative N-acetylmannosamine kinase	97.17
3lm2_A	226	Putative kinase; structural genomics, joint center	97.16
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	97.12
1woq_A	267	Inorganic polyphosphate/ATP-glucomannokinase; tran	97.09
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	97.02
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	97.01
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	96.92
3mdq_A	315	Exopolyphosphatase; structural genomics, joint cen	96.84
1bdg_A	451	Hexokinase; phosphotransferase; HET: GLC; 2.60A {S	96.83
3djc_A	266	Type III pantothenate kinase; structural genomics,	96.83
1sz2_A	332	Glucokinase, glucose kinase; ATP-dependent, glucos	96.69
1cza_N	917	Hexokinase type I; structurally homologous domains	96.67
1saz_A	381	Probable butyrate kinase 2; askha (acetate and sug	96.64
1zxo_A	291	Conserved hypothetical protein Q8A1P1; NESG, BTR25	96.61
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	96.59
3lm2_A	226	Putative kinase; structural genomics, joint center	96.58
2q2r_A	373	Glucokinase 1, putative; ATPase hexose kinase fami	96.5
1sz2_A	332	Glucokinase, glucose kinase; ATP-dependent, glucos	96.42
2q2r_A	373	Glucokinase 1, putative; ATPase hexose kinase fami	96.35
2yhx_A	457	Hexokinase B; transferase(phosphoryl,alcohol accep	96.24
3cer_A	343	Possible exopolyphosphatase-like protein; NESG, BL	96.12
3o8m_A	485	Hexokinase; rnaseh-like fold, glycolysis, glucose	96.11
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	96.1
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	96.05
1u6z_A	513	Exopolyphosphatase; alpha/beta protein, askha (ace	96.03
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	95.99
1cza_N	917	Hexokinase type I; structurally homologous domains	95.94
1zxo_A	291	Conserved hypothetical protein Q8A1P1; NESG, BTR25	95.85
1t6c_A	315	Exopolyphosphatase; alpha/beta protein, actin-like	95.8
2h3g_X	268	Biosynthetic protein; pantothenate kinase, anthrax	95.74
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	95.7
3bex_A	249	Type III pantothenate kinase; actin-like fold, ATP	95.68
1bdg_A	451	Hexokinase; phosphotransferase; HET: GLC; 2.60A {S	95.58
3djc_A	266	Type III pantothenate kinase; structural genomics,	95.42
1saz_A	381	Probable butyrate kinase 2; askha (acetate and sug	95.25
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	94.47
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	93.8
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	93.69
3o8m_A	485	Hexokinase; rnaseh-like fold, glycolysis, glucose	93.47
3hi0_A	508	Putative exopolyphosphatase; 17739545, structural	93.39
2h3g_X	268	Biosynthetic protein; pantothenate kinase, anthrax	93.36
3bex_A	249	Type III pantothenate kinase; actin-like fold, ATP	93.26
3hm8_A	445	Hexokinase-3; glucose, glucose-6-phosphate, non-pr	92.84
3f9m_A	470	Glucokinase; hexokinase IV, ATP-binding, diabetes	91.19
3mdq_A	315	Exopolyphosphatase; structural genomics, joint cen	91.04
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	91.0
3sk3_A	415	Acetate kinase, acetokinase; actin-like ATPase dom	90.41
3eno_A	334	Putative O-sialoglycoprotein endopeptidase; hydrol	90.1
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	89.7
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	88.7
3r9p_A	391	ACKA; ssgcid, seattle structural genomics center f	88.01
4ijn_A	398	Acetate kinase, acetokinase; proprionate kinase, A	87.96
3hm8_A	445	Hexokinase-3; glucose, glucose-6-phosphate, non-pr	87.93
3cet_A	334	Conserved archaeal protein; Q6M145, MRR63, NESG, X	87.61
3t69_A	330	Putative 2-dehydro-3-deoxygalactonokinase; structu	87.0
1t6c_A	315	Exopolyphosphatase; alpha/beta protein, actin-like	85.38
3nuw_A	295	2-OXO-3-deoxygalactonate kinase; structural genomi	84.87
3t69_A	330	Putative 2-dehydro-3-deoxygalactonokinase; structu	84.02
3cer_A	343	Possible exopolyphosphatase-like protein; NESG, BL	83.78
1u6z_A	513	Exopolyphosphatase; alpha/beta protein, askha (ace	82.6
3f9m_A	470	Glucokinase; hexokinase IV, ATP-binding, diabetes	82.41
3cj1_A	456	Ectonucleoside triphosphate diphosphohydrolase 2;	81.33
3nuw_A	295	2-OXO-3-deoxygalactonate kinase; structural genomi	80.64

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=100.00  E-value=1.6e-63  Score=530.37  Aligned_cols=343  Identities=42%  Similarity=0.761  Sum_probs=298.5

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      .++|+||||+||||+|++|||.+ |++++..+.+++..+|++||.||||++||+++++++++++++   .++++.+|.+|
T Consensus         2 ekkYvlgID~GTss~Ka~l~d~~-G~~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~---~~~~~~~I~aI   77 (526)
T 3ezw_A            2 EKKYIVALDQGTTSSRAVVMDHD-ANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAK---ADISSDQIAAI   77 (526)
T ss_dssp             -CCEEEEEEECSSEEEEEEECTT-CCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---HTCCGGGEEEE
T ss_pred             CceEEEEEEccccceeeeEEcCC-CCEEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHHHHHHH---cCCChhhEEEE
Confidence            46899999999999999999975 999999999999999999999999999999999999999886   46778899999


Q ss_pred             EEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHH
Q psy9709         231 GITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRA  310 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  310 (500)
                      ||++|++++|+||+++|+|++|+|+|+|.|+.++++++.+...   .+.+++.||.+++++++++||+|+++|+|+++++
T Consensus        78 gis~q~~~~v~~D~~~G~pl~~ai~W~D~R~~~~~~~l~~~~~---~~~i~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~  154 (526)
T 3ezw_A           78 GITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGL---EDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRER  154 (526)
T ss_dssp             EEEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTC---HHHHHHHHCCCSSTTSHHHHHHHHHHHSTTHHHH
T ss_pred             EEeCCCCCEEEEECCCCeEcccceecCCcchHHHHHHHHhhcc---HHHHHHHhCCCCCcccHHHHHHHHHHcCchHHHH
Confidence            9999999999999756999999999999999999999998765   3678899999999999999999999999999999


Q ss_pred             hhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC----
Q psy9709         311 IKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN----  386 (500)
Q Consensus       311 ~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~----  386 (500)
                      +++....+..+.+||.|+|||.+..++|+|+|++|++||+++++|++++++.+||+.++||+++++++++|.+...    
T Consensus       155 ~~~~~~~~~~i~~~L~~~Lt~g~~~~td~s~As~t~l~d~~~~~w~~~ll~~~gi~~~~LP~i~~~~~~~G~~~~~~~~~  234 (526)
T 3ezw_A          155 ARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIDGKGG  234 (526)
T ss_dssp             HHTTCEEEECHHHHHHHHHTTTSCCEEEHHHHTTSSSEETTTTEECHHHHHHHTCCGGGCCEEECSEEEEEEECTTCTTS
T ss_pred             HHHhhhhccchhHHHhhhhcCCCceEEEchhhccccCcCccccCcCHHHHHHcCCCHHHCCCccccccccCccchhhhcC
Confidence            9843344677889999999964567899999999999999999999999999999999999999999999985432    


Q ss_pred             Ccce------------------------------EEEEEeecC-----------------CCCceeeechhhhchhHHHH
Q psy9709         387 NGLV------------------------------TTVAYQFGP-----------------DATPIYALEGSIAVAGAAVK  419 (500)
Q Consensus       387 ~G~~------------------------------~~~~~~~~~-----------------~~p~~~~~~g~~~~~G~~~~  419 (500)
                      .|+.                              ..+....+.                 ..++.|.++|+++++|.+++
T Consensus       235 ~gipV~~g~gD~~aa~~G~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~eg~~~~~G~~~~  314 (526)
T 3ezw_A          235 TRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQ  314 (526)
T ss_dssp             CCEEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECTTSCEEEEEEEEESCSHHHHH
T ss_pred             CCCcEEEEcchHHHHhhhccccccceeEEEeccCeeEecccCCccccccccceeeeeeccCCcceeeeHHHHHHHHHHHH
Confidence            1111                              001111110                 11346889999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy9709         420 WLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL  499 (500)
Q Consensus       420 w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~  499 (500)
                      ||++.++........+..+...++++|++|+|||.|+|+|+|||++||+|+||+..|+++||+||++||+||.+|+++|.
T Consensus       315 Wl~~~~~~~~~~~~~~~~~~~~~~~~gl~~lP~~~G~r~P~~d~~arG~~~Glt~~~~~~~i~RAvlEgia~~~r~~le~  394 (526)
T 3ezw_A          315 WLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEA  394 (526)
T ss_dssp             HHHHTSCCCCSSSCHHHHHTTSSSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccchhHHHHHHhccCCCCCeEEeCCCCCCCCCCCCcccCeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999976544344455566667999999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q psy9709         500 Y  500 (500)
Q Consensus       500 ~  500 (500)
                      |
T Consensus       395 l  395 (526)
T 3ezw_A          395 M  395 (526)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=100.00  E-value=5.4e-63  Score=524.94  Aligned_cols=345  Identities=43%  Similarity=0.703  Sum_probs=297.0

Q ss_pred             cccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709         149 QTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV  228 (500)
Q Consensus       149 ~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~  228 (500)
                      +||++|++|||+|||++|++++|.+ |+++...+.+++..+|++||.+||+++||+++++++++++++   .++++.+|.
T Consensus        22 ~MM~~~~lgIDiGtts~k~~l~d~~-G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~---~~~~~~~I~   97 (520)
T 4e1j_A           22 SMMGGYILAIDQGTTSTRAIVFDGN-QKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEK---SGITANDIA   97 (520)
T ss_dssp             CCCSCEEEEEEECSSEEEEEEECTT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHT---TTCCGGGEE
T ss_pred             HHhhCeEEEEEeCCcceEEEEECCC-CCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHh---cCCCcccEE
Confidence            3567899999999999999999985 999999999999888999999999999999999999999864   456677899


Q ss_pred             EEEEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHH
Q psy9709         229 TLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVR  308 (500)
Q Consensus       229 ~I~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~  308 (500)
                      +|||+++++++++||+++|+|++|++.|+|.|+.++++++.+...   .+++++.||.++++.++++||+|+++|+||+|
T Consensus        98 ~Igis~~g~~~v~~D~~~G~~l~~~i~W~D~R~~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~  174 (520)
T 4e1j_A           98 AIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGL---EKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQ  174 (520)
T ss_dssp             EEEEEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTC---HHHHHHHHSSCSSTTSHHHHHHHHHHHSTTHH
T ss_pred             EEEEeCCcceEEEEECCCCeECccccccccCCHHHHHHHHHhccc---HHHHHHHHCCCCCchhHHHHHHHHHHcChHHH
Confidence            999999999999999437999999999999999999999998754   36789999999999999999999999999999


Q ss_pred             HHhhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC--
Q psy9709         309 RAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN--  386 (500)
Q Consensus       309 ~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~--  386 (500)
                      ++++++...|++++|||.|+|||...+++|+|+|++|+|||+++++|++++|+.+||+.++||+|+++++++|.+...  
T Consensus       175 ~~~~~~~~~~~~~~dyl~~~LTG~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~~~~~~l  254 (520)
T 4e1j_A          175 VRAAKGELCFGTIDTFLIWRLTGGECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEMLPEVKDCAADFGVTDPSLF  254 (520)
T ss_dssp             HHHHTTCEEEEEHHHHHHHHHTTTCCCEEEHHHHTTSSSEETTTTEECHHHHHHHTCCGGGSCEEECSBSCCCBCCHHHH
T ss_pred             HHHhcCCeEecCHHHHHHHHhcCCCeeeecHHHhhhhcccccccCCCCHHHHHHcCCCHHHCCceecCCCceeeeChhhC
Confidence            998732345778999999999941148999999999999999999999999999999999999999999999984320  


Q ss_pred             ------------------------C-------cceEEEEEeecC---------------CC--CceeeechhhhchhHHH
Q psy9709         387 ------------------------N-------GLVTTVAYQFGP---------------DA--TPIYALEGSIAVAGAAV  418 (500)
Q Consensus       387 ------------------------~-------G~~~~~~~~~~~---------------~~--p~~~~~~g~~~~~G~~~  418 (500)
                                              .       |....+....+.               ..  ++.|.++|+++++|.++
T Consensus       255 ~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~  334 (520)
T 4e1j_A          255 GAAIPILGVAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAV  334 (520)
T ss_dssp             TSCCBEEEECCHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTCCCCCSSSCEEEEEEEETTEEEEEEEEEESCSHHHH
T ss_pred             CCCCeEEEECCcHHHHHHhCCCCCCCcEEEEecCchheEEecCCccccCCCceeeEEeEecCCCceEEEcchHhhHHHHH
Confidence                                    0       111111111110               01  23688899999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9709         419 KWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE  498 (500)
Q Consensus       419 ~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~  498 (500)
                      +|+++.++...+|++++++++++|++++++|+|||.|+|+|+|||++||+|+|++.+|+++||+||++||+||.+|+++|
T Consensus       335 ~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~lP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~l~  414 (520)
T 4e1j_A          335 QWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLE  414 (520)
T ss_dssp             HHHHHTTCCC-----CHHHHHTSCTTCCCEEECCTTCBCTTTCBTTCCCEEEEECTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcccHHHHHHHHhcCCCCCcEEEEcCccCCCCCCCCCCCCEEEecccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999997666788999999988999999999999999999999999999999999999999999999999999999998


Q ss_pred             hC
Q psy9709         499 LY  500 (500)
Q Consensus       499 ~~  500 (500)
                      .|
T Consensus       415 ~l  416 (520)
T 4e1j_A          415 AM  416 (520)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=100.00  E-value=2.8e-63  Score=525.99  Aligned_cols=336  Identities=23%  Similarity=0.279  Sum_probs=294.7

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      .++|++|||+|||++|+++||.+ |+++...+.+++...|++||.+|||++||+++++++++++++   .+++..+|.+|
T Consensus         5 ~~~~~lgIDiGtts~k~~l~d~~-G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~---~~~~~~~I~~I   80 (508)
T 3ifr_A            5 QGRQVIGLDIGTTSTIAILVRLP-DTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTT---AGESDWRPGGI   80 (508)
T ss_dssp             --CEEEEEEECSSEEEEEEEETT-TEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---HCGGGCCEEEE
T ss_pred             cCCEEEEEEecCcceEEEEECCC-CCEEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHh---cCCChhheEEE
Confidence            45799999999999999999975 999999999999889999999999999999999999999875   35566889999


Q ss_pred             EEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHH
Q psy9709         231 GITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRA  310 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  310 (500)
                      ||++|++++++||+ +|+|++|+|.|+|.|+.++++++.+..+.   +++++.||.++++.++++||+|+++|+||+|++
T Consensus        81 gis~~~~~~v~~D~-~G~~l~~~i~W~D~R~~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~  156 (508)
T 3ifr_A           81 CVTGMLPAVVLLDD-RGAVLRPSIQQSDGRCGDEVAELRAEVDS---EAFLARTGNGVTQQLVTAKLRWIERHEPAVFGA  156 (508)
T ss_dssp             EEEECSSCBEEECT-TSCBCSCEECTTCCCCHHHHHHHHHHSCH---HHHHHHHSSCSSTTSHHHHHHHHHHHCHHHHHT
T ss_pred             EEECCCCcEEEECC-CCCCcccceeccccChHHHHHHHHhhccH---HHHHHHHCCCCChhhHHHHHHHHHHcCHHHHHH
Confidence            99999999999999 69999999999999999999999998763   678899999999999999999999999999999


Q ss_pred             hhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC----
Q psy9709         311 IKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN----  386 (500)
Q Consensus       311 ~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~----  386 (500)
                      ++    +|++++|||.|+||  |+.++|+|+|++|++||+++++|++++|+.+||+.++||+|+++++++|.+.+.    
T Consensus       157 ~~----~~l~~~dyl~~~LT--G~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~l~~~~a~~  230 (508)
T 3ifr_A          157 IA----TVCGSYDYINMLLT--GERVVDRNWALEGGFIDLASGTVEADLVALAHIPPSAVPPAHPTHRVLGAVTAEAAAL  230 (508)
T ss_dssp             CS----EEECHHHHHHHHHH--CCCCEEHHHHHHHTCEETTTTEECHHHHHTTTSCGGGSCCEECTTSEEEECCHHHHHH
T ss_pred             Hh----hhcCchHHHHHHhc--CCccccHhHhhcccCccCccCCCCHHHHHHcCCCHHHCCCCcCCCCeeeccCHHHHHH
Confidence            87    89999999999999  779999999999999999999999999999999999999999999999985321    


Q ss_pred             Cc----------------------------------ceEEEEEee------------cCCCCceeeechhhhchhHHHHH
Q psy9709         387 NG----------------------------------LVTTVAYQF------------GPDATPIYALEGSIAVAGAAVKW  420 (500)
Q Consensus       387 ~G----------------------------------~~~~~~~~~------------~~~~p~~~~~~g~~~~~G~~~~w  420 (500)
                      .|                                  ....+....            ....|+.|.++|+++++|.+++|
T Consensus       231 ~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~G~~~~W  310 (508)
T 3ifr_A          231 TGLPTGLPVYGGAADHIASALAAGITRPGDVLLKFGGAGDIIVASATAKSDPRLYLDYHLVPGLYAPNGCMAATGSALNW  310 (508)
T ss_dssp             HCCCTTCEEECCEEHHHHHHHHTTCCSTTEEEEEESSSEEEEECBSCCCCBTTBBCCBCSSTTCBCCEEEESSSHHHHHH
T ss_pred             hCCCCCCeEEEECchHHHHHHhCCCCCCCcEEEEechhhhheeeCCCcccCCCcceeeeecCCceEEechhhhhHHHHHH
Confidence            01                                  001111111            11237889999999999999999


Q ss_pred             HHHHcCC-CC--CHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9709         421 LRDNLNL-MD--NVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDI  496 (500)
Q Consensus       421 ~~~~~~~-~~--~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~  496 (500)
                      +++.|.. ..  +|+++++++++.+ +++|++|+|||.|||+|+|||++||+|+|++..|+++||+||++||+||.+|++
T Consensus       311 ~~~~~~~~~~~~~~~~l~~~a~~~~~~~~gl~flP~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~  390 (508)
T 3ifr_A          311 LAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGHLWRALLEAVALAFRHH  390 (508)
T ss_dssp             HHHHHSTTCTTHHHHHHHHHHHTSCTTGGGCEEECCTTCCC----CCCCCCEEESCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCCHHHHHHHHhcCCCCCCCeEEecCCCCCCCCCCCCCcCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999842 12  5889999888765 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhC
Q psy9709         497 LELY  500 (500)
Q Consensus       497 ~~~~  500 (500)
                      +|.|
T Consensus       391 ~~~l  394 (508)
T 3ifr_A          391 VAVL  394 (508)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9864

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=100.00  E-value=1e-62  Score=521.27  Aligned_cols=333  Identities=24%  Similarity=0.370  Sum_probs=293.3

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      +++|++|||+|||++|+++||.+ |+++...+.+++..+|++||.|||+++||+++++++++++++   .+   .+|.+|
T Consensus         2 ~m~~~lgIDiGtts~K~~l~d~~-G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~---~~---~~I~~I   74 (504)
T 3ll3_A            2 SLKYIIGMDVGTTATKGVLYDIN-GKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQK---ID---GKIAAI   74 (504)
T ss_dssp             CCEEEEEEEECSSEEEEEEEETT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHT---CS---SEEEEE
T ss_pred             CCCEEEEEEecCCceEEEEEcCC-CCEEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHh---CC---CCeEEE
Confidence            35699999999999999999985 999999999999889999999999999999999999998864   22   679999


Q ss_pred             EEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHH
Q psy9709         231 GITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRA  310 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  310 (500)
                      ||++|++++++||+ +|+|++|+|+|+|.|+.++++++.+..+   .+++++.||.++++.++++||+|+++|+||+|++
T Consensus        75 gis~q~~~~v~~D~-~G~pl~~~i~W~D~R~~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~  150 (504)
T 3ll3_A           75 SWSSQMHSLIGLGS-DDELLTNSITWADNCAKSIVQDAKNRGF---AQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVFSQ  150 (504)
T ss_dssp             EEEECSSCBEEECT-TSCBSSCEECTTCCTTHHHHHHHHHHTH---HHHHHHHHCCCSCTTSHHHHHHHHHHHCHHHHHH
T ss_pred             EEECCCCcEEEECC-CCCCcccceeCCccCHHHHHHHHHhccC---HHHHHHHHCCCCCcccHHHHHHHHHHcChHHHHH
Confidence            99999999999999 7999999999999999999999998764   3678999999999999999999999999999999


Q ss_pred             hhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC----
Q psy9709         311 IKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN----  386 (500)
Q Consensus       311 ~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~----  386 (500)
                      ++    +|++++|||.|+||  |+.++|+|+|++|++||+++++|++++|+.+||+.++||+|+++++++|.+.+.    
T Consensus       151 ~~----~~~~~~dyl~~~LT--G~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~l~~~~a~~  224 (504)
T 3ll3_A          151 AQ----KWIGIKEYIIFRLT--GKLVTDTTMAAGTGILNLKTLTWDQELLDILKIKKEQLPKIAQPTKVIFPIKTEYVKK  224 (504)
T ss_dssp             CC----EEECHHHHHHHHHH--SCCEEEHHHHTTTTCBCTTTSSBCHHHHHHHTCCGGGSCEEECTTCEECCCCHHHHHH
T ss_pred             Hh----heeCHHHHHHHHHh--CCcccchhHhhcccCeeCCCCCcCHHHHHHcCCCHHHCCCeeCCcceeeccCHHHHHh
Confidence            87    89999999999999  789999999999999999999999999999999999999999999999984321    


Q ss_pred             Cc----------------------------------ceEEEEEeecCC-------------CCceeeechhhhchhHHHH
Q psy9709         387 NG----------------------------------LVTTVAYQFGPD-------------ATPIYALEGSIAVAGAAVK  419 (500)
Q Consensus       387 ~G----------------------------------~~~~~~~~~~~~-------------~p~~~~~~g~~~~~G~~~~  419 (500)
                      .|                                  ....+....+..             .|+.|.++|+++++|.+++
T Consensus       225 ~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~  304 (504)
T 3ll3_A          225 LGIDSDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQPKIDPSASYFCYPADKTHYLLGGPVNNGGIVFN  304 (504)
T ss_dssp             HTCCTTCEEEEEEEHHHHHHHTTTCCSTTEEEEEESSSEEEEEEESSCCCCTTCCSEEEEEETTEEEEEEEESCSHHHHH
T ss_pred             cCCCcCCCEEEEccHHHHHHHhCCCCCCCcEEEEechhhhheeeCCCcccCCCCceEEEEeCCCeEEEEeehhhHHHHHH
Confidence            01                                  001111111100             1467889999999999999


Q ss_pred             HHHHHcCCC-CCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9709         420 WLRDNLNLM-DNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDIL  497 (500)
Q Consensus       420 w~~~~~~~~-~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~  497 (500)
                      |+++.+... ..++.+.++++++| ++++++|+|||.|+|+|+|||++||+|+|++..|+++||+||++||+||.+|+++
T Consensus       305 W~~~~~~~~~~~~~~~~~~a~~~~~g~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~~  384 (504)
T 3ll3_A          305 WARQTLFDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAPIWDANARGSFVGLTRMHQKPEMARAVIEGIIFNLYDAA  384 (504)
T ss_dssp             HHHHHHTCTTCCHHHHHHHHHTSCTTGGGCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccchhHHHHHHHHHhcCCCCCCCeEEecCccCCCCCCCCCccCeEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999988643 23454444777776 8999999999999999999999999999999999999999999999999999999


Q ss_pred             HhC
Q psy9709         498 ELY  500 (500)
Q Consensus       498 ~~~  500 (500)
                      |.|
T Consensus       385 ~~l  387 (504)
T 3ll3_A          385 SNL  387 (504)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=100.00  E-value=3.8e-63  Score=525.41  Aligned_cols=335  Identities=22%  Similarity=0.223  Sum_probs=298.2

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      |++|++|||+|||++|+++||.+ |+++...+.+++...+++||.+||+++||+++++++++++ +   .+++..+|.+|
T Consensus         3 mm~~~lgIDiGtts~k~~l~d~~-G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~-~---~~~~~~~I~~I   77 (511)
T 3hz6_A            3 LAFYIATFDIGTTEVKAALADRD-GGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWW-Q---SGVDARRVSAI   77 (511)
T ss_dssp             CCCEEEEEEECSSEEEEEEECTT-SCEEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHH-T---TTCCGGGEEEE
T ss_pred             cccEEEEEEeCCCceEEEEECCC-CCEEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHHHH-h---cCCChhHeEEE
Confidence            35699999999999999999985 9999999999998899999999999999999999999987 4   45667889999


Q ss_pred             EEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHH
Q psy9709         231 GITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRA  310 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  310 (500)
                      ||++|++++++||+ +|+|++|+|+|+|.|+.++++++.+..+   .+++++.||.++++.++++||+|+++|+||+|++
T Consensus        78 gis~q~~~~v~~D~-~G~pl~~~i~W~D~R~~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~  153 (511)
T 3hz6_A           78 VLSGQMQNFLPLDQ-DHEPLHRAVLYSDKRPLKEAEEINARHG---ADNLWSALENPMTAASILPKLVFWRASFPQAFGR  153 (511)
T ss_dssp             EEEECCSCBEEECT-TSCBSSCEECTTCCCCHHHHHHHHHHHC---HHHHHHHHSSCCSTTSHHHHHHHHHHHCHHHHTT
T ss_pred             EEecccccEEEECC-CcCCCcCceecCCCCHHHHHHHHHhccC---HHHHHHHHCCCCCchhHHHHHHHHHHhChHHHHH
Confidence            99999999999999 6999999999999999999999998765   3678999999999999999999999999999998


Q ss_pred             hhcccccccc-hhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC---
Q psy9709         311 IKENRCLFGT-VDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN---  386 (500)
Q Consensus       311 ~~~~~~~~~~-~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~---  386 (500)
                      ++    +|++ ++|||.|+||  |+.++|+|+|++|++||+++++|++++|+.+||+.++||+|+++++++|.+.+.   
T Consensus       154 ~~----~~l~~~~dyl~~~LT--G~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~l~~~~a~  227 (511)
T 3hz6_A          154 LR----HVVLGAKDYVVLRLT--GRHATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQVGGVSALAAR  227 (511)
T ss_dssp             CC----EEECSHHHHHHHHHH--SCCEECHHHHHHTTCEETTTTEECHHHHHHTTCCGGGSCEECCTTSEEEECCHHHHH
T ss_pred             HH----HHhcCcHHHHHHHHh--CCceeeHhHhhcccceeCCCCCcCHHHHHHhCCCHHHCCCCcCCCCcccccCHHHHH
Confidence            87    8999 9999999999  789999999999999999999999999999999999999999999999984310   


Q ss_pred             -----------------------------------CcceEEEEEeec----------------CCCCceeeechhhhchh
Q psy9709         387 -----------------------------------NGLVTTVAYQFG----------------PDATPIYALEGSIAVAG  415 (500)
Q Consensus       387 -----------------------------------~G~~~~~~~~~~----------------~~~p~~~~~~g~~~~~G  415 (500)
                                                         .|....+....+                ...|+.|++.|+++++|
T Consensus       228 ~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G  307 (511)
T 3hz6_A          228 QTGFVSGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAG  307 (511)
T ss_dssp             HHCCCTTCEEECCEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEECCCCCSCCSSCCEEECSSSTTEEEEEEEESSSH
T ss_pred             hhCCCCCCeEEEECchHHHHHHhCCCCCCCcEEEEecchhhheeecCCeecccCCCCceEEEEEecCCceEEEeehhhHH
Confidence                                               011111111111                12356666668899999


Q ss_pred             HHHHHHHHHcC--CCCCHHHHHHHHHhcC-C---CCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy9709         416 AAVKWLRDNLN--LMDNVRETESLAEKVM-T---TGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAI  489 (500)
Q Consensus       416 ~~~~w~~~~~~--~~~~~~~l~~~~~~~~-~---~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egi  489 (500)
                      .+++|+++.++  ...+|+++++++++++ +   +++++|+|||.|+|+|+||+++||+|+|++..|+++||+||++||+
T Consensus       308 ~~~~W~~~~~~~~~~~~~~~l~~~a~~~~~g~~~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgi  387 (511)
T 3hz6_A          308 NILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTGATTRAQILLAVLEGA  387 (511)
T ss_dssp             HHHHHHGGGGTCCTTSCSHHHHHHHHHHHTTCCCCTTCEEEEESSCBCSSSCBSSCEEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccHHHHHHHHHhCCCCCCCCCCEEEeCCCCCCCCCCCCCccceEEEcCCCCCCHHHHHHHHHHHH
Confidence            99999999987  5557899999988875 8   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q psy9709         490 CFQTRDILELY  500 (500)
Q Consensus       490 a~~~~~~~~~~  500 (500)
                      ||.+|++++.|
T Consensus       388 a~~~~~~~~~l  398 (511)
T 3hz6_A          388 ALSLRWCAELL  398 (511)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=100.00  E-value=1.1e-62  Score=521.56  Aligned_cols=343  Identities=40%  Similarity=0.723  Sum_probs=300.4

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      .++|++|||+|||++|+++||.+ |+++...+.+++..+|++||.+||+++||+++++++++++++.   ++++.+|.+|
T Consensus         3 ~~~~~lgIDiGtts~k~~l~d~~-G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~---~~~~~~I~~I   78 (506)
T 3h3n_X            3 EKNYVMAIDQGTTSSRAIIFDRN-GKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIES---GIRPEAIAGI   78 (506)
T ss_dssp             CCCEEEEEEECSSEEEEEEEETT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHH---TCCGGGEEEE
T ss_pred             CCCEEEEEEcCCCceEEEEECCC-CCEEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHHc---CCChhheEEE
Confidence            45799999999999999999985 9999999999998899999999999999999999999998763   5666789999


Q ss_pred             EEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHH
Q psy9709         231 GITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRA  310 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  310 (500)
                      ||++|++++++||+++|+|++|+|+|+|.|+.++++++.+...   .+.+++.||.++++.++++||+|+++|+||+|++
T Consensus        79 gis~~~~~~v~~D~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  155 (506)
T 3h3n_X           79 GITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGH---TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEK  155 (506)
T ss_dssp             EEEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTC---HHHHHHHHSCCCCTTSHHHHHHHHHHHSTTHHHH
T ss_pred             EeeCCcccEEEEeCCCCeECCCceEecCcchHHHHHHHHhccC---HHHHHHHhCCCCCchhHHHHHHHHHHhCHHHHHH
Confidence            9999999999999934999999999999999999999998754   3678999999999999999999999999999999


Q ss_pred             hhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC----
Q psy9709         311 IKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN----  386 (500)
Q Consensus       311 ~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~----  386 (500)
                      ++++...|++++|||.|+|||..++++|+|+|++|+|||+++++|++++|+.+||+.++||+|+++++++|.+...    
T Consensus       156 ~~~~~~~~~~~~dyl~~~LTG~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~~~~~~~lg  235 (506)
T 3h3n_X          156 ADNGELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYRFYG  235 (506)
T ss_dssp             HHTTCEEEECHHHHHHHHHTTTSCCEEEHHHHHTTTSEETTTTEECHHHHHHTTCCGGGCCEEECSEEEEEECCGGGTTT
T ss_pred             HhcCCeEEecHHHHHHHHhcCCceeeeEHHHhhhhhCeecCCCCcCHHHHHHcCcCHHHCCceecCCCcceeeChHHhcC
Confidence            9733345888999999999941168999999999999999999999999999999999999999999999985421    


Q ss_pred             Ccc------------------------------eEEEEEeecC---------------CCCc--eeeechhhhchhHHHH
Q psy9709         387 NGL------------------------------VTTVAYQFGP---------------DATP--IYALEGSIAVAGAAVK  419 (500)
Q Consensus       387 ~G~------------------------------~~~~~~~~~~---------------~~p~--~~~~~g~~~~~G~~~~  419 (500)
                      .|+                              ...+....+.               ..++  .|.++|+++++|.+++
T Consensus       236 ~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~  315 (506)
T 3h3n_X          236 SEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGKVYYALEGSIFVAGSAIQ  315 (506)
T ss_dssp             CCCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEETCCCSCCTTSEEEEEEEETTEEEEEEEEEECCSSHHHH
T ss_pred             CCCeEEEECCcHHHHHHhCCCCCCCcEEEEecchheeeeecCCccccCCCceEEEeeeecCCCCEEEEecchhhHHHHHH
Confidence            111                              0111111110               0133  5888999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy9709         420 WLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL  499 (500)
Q Consensus       420 w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~  499 (500)
                      |+++.++...+|+++++++++++..++++|+|||.|+|+|+||+++||+|+|++..|+++||+||++||+||.+|++++.
T Consensus       316 W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~~~~  395 (506)
T 3h3n_X          316 WLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDT  395 (506)
T ss_dssp             HHHHTSCCCSSTTHHHHHHTTCCSCSCCEEECCTTCBCTTTCBTTCCCEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCcHHHHHHHHhcCCCCCceEEeccccCCCCCccCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999976667889999999888669999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q psy9709         500 Y  500 (500)
Q Consensus       500 ~  500 (500)
                      |
T Consensus       396 l  396 (506)
T 3h3n_X          396 M  396 (506)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=100.00  E-value=1.9e-62  Score=519.49  Aligned_cols=344  Identities=41%  Similarity=0.737  Sum_probs=300.9

Q ss_pred             ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709         150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT  229 (500)
Q Consensus       150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~  229 (500)
                      .|++|++|||+|||++|+++||.+ |+++...+.+++..+|++||.+||+++||+++++++++++++   .++++.+|.+
T Consensus         3 aM~~~~lgIDiGtts~k~~l~d~~-G~il~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~~~~I~~   78 (501)
T 3g25_A            3 AMEKYILSIDQGTTSSRAILFNQK-GEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINE---NDVRADQIAG   78 (501)
T ss_dssp             CCCCEEEEEEECSSEEEEEEECTT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHT---TTCCGGGEEE
T ss_pred             ccccEEEEEEeCccceEEEEEcCC-CCEEEEEEeecccccCCCCcEEECHHHHHHHHHHHHHHHHHh---cCCCcccEEE
Confidence            466799999999999999999985 999999999999889999999999999999999999999865   4566788999


Q ss_pred             EEEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHH
Q psy9709         230 LGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRR  309 (500)
Q Consensus       230 I~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  309 (500)
                      |||++|++++++||+++|+|++|++.|+|.|+.++++++.+...   .+++++.||.++++.++++||+|+++|+||+|+
T Consensus        79 Igis~~~~~~v~~D~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~  155 (501)
T 3g25_A           79 IGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSELKQQGY---EQTFRDKTGLLLDPYFAGTKVKWILDNVEGARE  155 (501)
T ss_dssp             EEEEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTC---HHHHHHHHSCCSSTTSHHHHHHHHHHHSTTHHH
T ss_pred             EEEECCcCcEEEEECCCCeECCCceeeccCChHHHHHHHHhccC---HHHHHHHHCCCCCchhHHHHHHHHHHhCHHHHH
Confidence            99999999999999933999999999999999999999998754   377899999999999999999999999999999


Q ss_pred             HhhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC---
Q psy9709         310 AIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN---  386 (500)
Q Consensus       310 ~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~---  386 (500)
                      ++++....|++++|||.|+|||..+.++|+|+|++|++||+++++|++++|+.+||+.++||+|+++++++|.+...   
T Consensus       156 ~~~~~~~l~~~~~dyl~~~LTG~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~~~~~~~~  235 (501)
T 3g25_A          156 KAENGDLLFGTIDTWLVWKLSGKAAHITDYSNASRTLMFNIHDLEWDDELLELLTVPKNMLPEVKASSEVYGKTIDYHFY  235 (501)
T ss_dssp             HHHTTCEEEEEHHHHHHHHHTTTSCCEEEHHHHTTSSSEETTTTEECHHHHHHHTCCGGGCCEEECSEEEEEECCGGGTT
T ss_pred             HHhcCCeEEecHHHHHHHHhcCCCeeeeeHHHhhcccCeeCCCCCCCHHHHHHhCcCHHHCCceecCCCceeccchHHhC
Confidence            99722334888999999999941179999999999999999999999999999999999999999999999986421   


Q ss_pred             -Ccc------------------------------eEEEEEeecC---------------CCCc--eeeechhhhchhHHH
Q psy9709         387 -NGL------------------------------VTTVAYQFGP---------------DATP--IYALEGSIAVAGAAV  418 (500)
Q Consensus       387 -~G~------------------------------~~~~~~~~~~---------------~~p~--~~~~~g~~~~~G~~~  418 (500)
                       .|+                              ...+....+.               ..++  .|.++|+++++|.++
T Consensus       236 g~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~  315 (501)
T 3g25_A          236 GQEVPIAGVAGDQQAALFGQACFERGDVKNTYGTGGFMLMNTGDKAVKSESGLLTTIAYGIDGKVNYALEGSIFVSGSAI  315 (501)
T ss_dssp             TCCCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEEEETTEEEEEEEEEESCSTHHH
T ss_pred             CCCCeEEEECccHHHHHHhCCCCCCCcEEEEccchhheeeecCCccccCCCCeEEEeeEecCCccEEEEecccccHHHHH
Confidence             111                              0111111110               0123  688899999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9709         419 KWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE  498 (500)
Q Consensus       419 ~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~  498 (500)
                      +|+++.++...+|+++++++++++..++++|+|||.|+|+|+|||++||+|+|++..|+++||+||++||+||.+|++++
T Consensus       316 ~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~~  395 (501)
T 3g25_A          316 QWLRDGLRMINSAPQSESYATRVDSTEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIRATLESLCYQTRDVME  395 (501)
T ss_dssp             HHHHHTSCCCSSGGGHHHHHTTSSCCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCcHHHHHHHHhhCCCCCeEEEecccccCCCCCCCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999997666788999999888877999999999999999999999999999999999999999999999999999998


Q ss_pred             hC
Q psy9709         499 LY  500 (500)
Q Consensus       499 ~~  500 (500)
                      .|
T Consensus       396 ~l  397 (501)
T 3g25_A          396 AM  397 (501)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=100.00  E-value=2.3e-60  Score=503.29  Aligned_cols=338  Identities=42%  Similarity=0.714  Sum_probs=297.9

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      +++++|||+|||++|++++|.+ |+++...+.+++..+|++||.+||+++||+++++++++++++.   +++..+|.+||
T Consensus         2 ~~~~lgiDiGtt~~k~~l~d~~-g~~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~---~~~~~~i~~Ig   77 (497)
T 2zf5_O            2 EKFVLSLDEGTTSARAIIFDRE-SNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSA---RIEPNQIAAIG   77 (497)
T ss_dssp             CCEEEEEEECSSEEEEEEECTT-CCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHH---TCCGGGEEEEE
T ss_pred             CcEEEEEecCCchhEEEEECCC-CCEEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHhc---CCCcccEEEEE
Confidence            4689999999999999999985 9999999999998889999999999999999999999998763   45667899999


Q ss_pred             EcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHh
Q psy9709         232 ITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAI  311 (500)
Q Consensus       232 vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~  311 (500)
                      |+++++++++||+ +|+|++|+|.|+|.|+.++++++.+. .   .+.+++.||.++++.++++||+|+++|+||+|+++
T Consensus        78 is~~~~~~v~~D~-~G~~l~~~i~w~D~R~~~~~~~l~~~-~---~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~  152 (497)
T 2zf5_O           78 VTNQRETTLVWDK-DGKPLYNAIVWQCRRTAEMVEEIKRE-Y---GTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKA  152 (497)
T ss_dssp             EEECSSCEEEECT-TCCBSSCEECTTCCTTHHHHHHHHHH-H---HHHHHHHHSSCCCTTSHHHHHHHHHHHSTTHHHHH
T ss_pred             EecCCCcEEEECC-CCCCcccceeecccCcHHHHHHHHhh-h---HHHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHH
Confidence            9999999999999 79999999999999999999999876 3   25688899999999999999999999999999999


Q ss_pred             hcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC---C-
Q psy9709         312 KENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN---N-  387 (500)
Q Consensus       312 ~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~---~-  387 (500)
                      +++...|++++|||.|+||  |+.++|+|+|++|++||+++++|++++|+.+||+.++||+|+++++++|.+...   . 
T Consensus       153 ~~~~~~~~~~~d~l~~~LT--G~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~i~~~~~~~G~~~~~~~g~g  230 (497)
T 2zf5_O          153 EKGEVMFGTVDTFLIYRLT--GEHVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEVRESSEVYGYTKKELLGAE  230 (497)
T ss_dssp             HTTCCEEEEHHHHHHHHHH--SCCEEEHHHHTTSSSEETTTTEECHHHHHHTTCCGGGCCEEECSEEEEEECCHHHHSSC
T ss_pred             hcCCCEEEcHHHHHHHHHh--CCeeeeHHHhhhhcCccCCCCCcCHHHHHHcCcCHHHCCCcCCCCCeeeecCHHHcCCC
Confidence            7333448899999999999  789999999999999999999999999999999999999999999999975310   1 


Q ss_pred             -----------------------------cceEEEEEeecC--------------CCCc--eeeechhhhchhHHHHHHH
Q psy9709         388 -----------------------------GLVTTVAYQFGP--------------DATP--IYALEGSIAVAGAAVKWLR  422 (500)
Q Consensus       388 -----------------------------G~~~~~~~~~~~--------------~~p~--~~~~~g~~~~~G~~~~w~~  422 (500)
                                                   |....+....+.              ..|+  .|.++|+++++|.+++|++
T Consensus       231 ~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~w~~  310 (497)
T 2zf5_O          231 IPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKMVLYSDNLLTTIAWGLNGRVSYALEGSIFVTGAAVQWLR  310 (497)
T ss_dssp             CEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEETCCCCCTTSEEEEEEEETTEEEEEEEEEESCSHHHHHHHH
T ss_pred             CeEEEEccHHHHHHHhCCCCCCCcEEEEcchhheeeEECCCCccCCCCcEEEEEEEcCCCCEEEEechhhhHHHHHHHHH
Confidence                                         111111111110              0122  6889999999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         423 DNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       423 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      +.++...+|++++++++++|++++++|+|||.|+|+|+||+++||+|+|++..|+++|++||++||+||.+|++++.|
T Consensus       311 ~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~l~~l  388 (497)
T 2zf5_O          311 DGIKIIKHASETEELATKLESNEGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEM  388 (497)
T ss_dssp             HTSCCCSCGGGHHHHHTTSSSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCcHHHHHHHHhhCCCCCceEEecCcCCCCCCCCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988765678889999888888999999999999999999999999999999999999999999999999999999864

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=100.00  E-value=1e-59  Score=497.95  Aligned_cols=338  Identities=41%  Similarity=0.738  Sum_probs=296.0

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      ++++|||+|||++|++++|.+ |+++...+.+++..++++||.+||+++||+++++++++++++   .+++..+|.+|||
T Consensus         2 ~~~lgiDiGtT~~k~~l~d~~-g~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~i~~Igi   77 (495)
T 2dpn_A            2 AFLLALDQGTTSSRAILFTLE-GRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRR---AGAEAGEVLALGI   77 (495)
T ss_dssp             -CEEEEEECSSEEEEEEECTT-SCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHH---TTCCGGGCCEEEE
T ss_pred             cEEEEEeeCCcceEEEEECCC-CCEEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHh---cCCCcccEEEEEE
Confidence            478999999999999999985 999999999999888999999999999999999999999875   4556678999999


Q ss_pred             cCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhh
Q psy9709         233 TNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIK  312 (500)
Q Consensus       233 s~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~  312 (500)
                      +++++++++||+++|++++|+|.|+|.|+.++++++.+. +.  .+.+++.||.++++.++++||+|+++|+||+|++++
T Consensus        78 s~~~~~~~~vD~~~G~~l~~~i~w~D~R~~~~~~~l~~~-~~--~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~  154 (495)
T 2dpn_A           78 TNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRAK-GL--EPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAE  154 (495)
T ss_dssp             EECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHT-TC--HHHHHHHTSCCSCTTSHHHHHHHHHHHSSSHHHHHH
T ss_pred             eCCCccEEEEECCCCcCCccceeecccChHHHHHHHHhc-cc--hhHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHHh
Confidence            999999999998449999999999999999999999876 21  357888999999999999999999999999999997


Q ss_pred             cccccccchhHHHHHhhcCCC--eeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC---C
Q psy9709         313 ENRCLFGTVDTWLVWNLTGRT--CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN---N  387 (500)
Q Consensus       313 ~~~~~~~~~~dyi~~~LTg~g--~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~---~  387 (500)
                      ++.+.|++++|||.|+||  |  ++++|+|+|++|++||+++++|++++|+.+||+.++||+|+++++++|.+...   .
T Consensus       155 ~~~~~~~~~~d~l~~~LT--G~~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~i~~~~~~~G~~~~~~~G~  232 (495)
T 2dpn_A          155 GGGVAFGTVDTWLIWNLT--GGKVHATDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPSDGDFGETLPELLGA  232 (495)
T ss_dssp             HTCEEEECHHHHHHHHHT--TTSCCEECHHHHTTSSSEETTTTEECHHHHHHTTCCSTTCCEECCTTSCCCBCCHHHHSS
T ss_pred             cCCcEEECHHHHHHHHhc--CCCeEEEehHHhHhhcCccCccCCcCHHHHHHcCCCHHHCCCccCCCCeeEeccHHHcCC
Confidence            333449999999999999  6  79999999999999999999999999999999999999999999999975310   0


Q ss_pred             ------------------------------cceEEEEEeecC---------------CCCc--eeeechhhhchhHHHHH
Q psy9709         388 ------------------------------GLVTTVAYQFGP---------------DATP--IYALEGSIAVAGAAVKW  420 (500)
Q Consensus       388 ------------------------------G~~~~~~~~~~~---------------~~p~--~~~~~g~~~~~G~~~~w  420 (500)
                                                    |....+....+.               ..|+  .|.++|+++++|.+++|
T Consensus       233 g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~w  312 (495)
T 2dpn_A          233 PVPIRGVLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLGGRATYALEGSLFVAGAAVGW  312 (495)
T ss_dssp             CCBEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEEEETTEEEEEEEEEESCSHHHHHH
T ss_pred             CCeEEEECcHHHHHHHhCCCCCCCcEEEEccHhhhhhhhcCCccccCCCCceEEEEEEcCCCCEEEEechHHhHHHHHHH
Confidence                                          111111111110               0123  68889999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         421 LRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       421 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      +++ ++...+|+++++++++++++++++|+|||.|+|+|+||+++||+|+|++..|+++|++||++||+||.+|.+++.|
T Consensus       313 ~~~-~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~~~rAvlEgia~~~~~~~~~l  391 (495)
T 2dpn_A          313 LKE-VGLIRESAEVEALAASVEDTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAM  391 (495)
T ss_dssp             HHH-TTSSSSTTTHHHHHHTCSCCSSCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-cCCccCHHHHHHHHhhCCCCCcEEEecCCCCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999 8765678889999988888899999999999999999999999999999999999999999999999999999864

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=100.00  E-value=2.2e-59  Score=496.42  Aligned_cols=340  Identities=41%  Similarity=0.700  Sum_probs=297.4

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      ++++|||+|||++|+++||.+ |+++...+.+++..++++||.+||+++||+++++++++++++.. .+++..+|.+|||
T Consensus         4 ~~~lgIDiGtT~~k~~l~d~~-g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~-~~~~~~~i~~Igi   81 (503)
T 2w40_A            4 NVILSIDQSTQSTKVFFYDEE-LNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLK-DKYTSVIIKCIGI   81 (503)
T ss_dssp             EEEEEEEECSSEEEEEEEETT-CCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHH-HHSSSCEEEEEEE
T ss_pred             cEEEEEEeCCcceEEEEECCC-CCEEEEEEEeeeeecCCCCcEEECHHHHHHHHHHHHHHHHHHhh-cCCCccceEEEEE
Confidence            589999999999999999985 99999999999988899999999999999999999999887520 0244568999999


Q ss_pred             cCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhh
Q psy9709         233 TNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIK  312 (500)
Q Consensus       233 s~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~  312 (500)
                      +++++++++||+++|++++|+|.|+|.|+.++++++.+...   .+.+++.||.++++.++++||+|+++|+||+|++++
T Consensus        82 s~~~~~~~~~D~~~G~~l~~~i~w~D~r~~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~  158 (503)
T 2w40_A           82 TNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYN---NNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKID  158 (503)
T ss_dssp             EECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHHHHHSC---HHHHHHHHSSCCCSSSHHHHHHHHHHHCHHHHHHHH
T ss_pred             cCCcceEEEEECCCCcCCccceeecccCcHHHHHHHHhccc---hHHHHHHhCCCCCcccHHHHHHHHHHhChHHHHHHh
Confidence            99999999999944999999999999999999999988632   357888999999999999999999999999999998


Q ss_pred             cccccccchhHHHHHhhcCCC-eeeeecccccccccccCCCCCCcHHHHhhcCCC-CCCCCCcccCCcccceeecC---C
Q psy9709         313 ENRCLFGTVDTWLVWNLTGRT-CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVP-PTILPEIRSSSEIYGKVHSN---N  387 (500)
Q Consensus       313 ~~~~~~~~~~dyi~~~LTg~g-~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~-~~~lP~i~~~~~~~G~~~~~---~  387 (500)
                      +++..|++++|||.|+||  | ++++|+|+|++|++||+++++|++++|+.+||+ .++||+|+++++++|.+...   .
T Consensus       159 ~~~~~~~~~~d~l~~~LT--G~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~~lP~i~~~~~~~G~~~~~~~g~  236 (503)
T 2w40_A          159 DGTAVIGNINTWLIFNLT--KGNCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPD  236 (503)
T ss_dssp             TTCEEEEEHHHHHHHHHH--TSCCEEEHHHHTTTTCBCTTTCSBCHHHHHHTTCCCGGGSCEEECSEEEEEECCCTTSGG
T ss_pred             cCCeEEECHHHHHHHHHc--CCCccccHHHhhhhcCccCCCCccCHHHHHHcCCChHHHCCCccCCcCceeeccHHHcCC
Confidence            333449999999999999  6 599999999999999999999999999999999 99999999999999976421   0


Q ss_pred             --cce------------------------------EEEEEeec---------------CCCCc----eeeechhhhchhH
Q psy9709         388 --GLV------------------------------TTVAYQFG---------------PDATP----IYALEGSIAVAGA  416 (500)
Q Consensus       388 --G~~------------------------------~~~~~~~~---------------~~~p~----~~~~~g~~~~~G~  416 (500)
                        |+.                              ..+....+               ...|+    .|.++|+++++|.
T Consensus       237 ~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~g~  316 (503)
T 2w40_A          237 YLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSIGTAGS  316 (503)
T ss_dssp             GTTCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCSTTSCCEEEEEEEESCSHH
T ss_pred             CCCceEEEECchHHHHHHhCCCCCCCcEEEEechhheeeeecCCccccCCCCceeEEEeecCCCCCceEEEechhhhhHh
Confidence              210                              11111111               01244    7999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9709         417 AVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDI  496 (500)
Q Consensus       417 ~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~  496 (500)
                      +++|+++ ++...+|++++++++++++++|++|+|||.|+|+|+|||++||+|+|++..|+++|++||++||+||.+|.+
T Consensus       317 ~~~w~~~-~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~  395 (503)
T 2w40_A          317 GVSWLLK-NKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEI  395 (503)
T ss_dssp             HHHHHHH-TTSSSCGGGHHHHHHHCCSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hCCcCCHHHHHHHHhhCCCCCCEEEecCCCCCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999 876567889999998888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhC
Q psy9709         497 LELY  500 (500)
Q Consensus       497 ~~~~  500 (500)
                      +|.|
T Consensus       396 ~~~l  399 (503)
T 2w40_A          396 VDSL  399 (503)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9864

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=100.00  E-value=1.3e-59  Score=498.13  Aligned_cols=339  Identities=44%  Similarity=0.799  Sum_probs=298.6

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      ++++|||+|||++|++++|.+ |+++...+.+++..+|++||.+||+++||+++++++++++++   .+++..+|.+|||
T Consensus         2 ~~~lgiDiGtts~k~~l~d~~-G~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~i~~Igi   77 (504)
T 2d4w_A            2 DYVLAIDQGTTSSRAIVFDHS-GEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTR---GNLTHEDIAAVGI   77 (504)
T ss_dssp             CEEEEEEECSSEEEEEEECTT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---TTCCGGGEEEEEE
T ss_pred             CEEEEEecCCcceEEEEECCC-CCEEEEEEEecceecCCCCceeECHHHHHHHHHHHHHHHHHH---cCCCcccEEEEEE
Confidence            478999999999999999985 999999999999888999999999999999999999999875   4555678999999


Q ss_pred             cCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhh
Q psy9709         233 TNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIK  312 (500)
Q Consensus       233 s~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~  312 (500)
                      +++++++++||+++|++++|+|.|+|.|+.++++++.+..+   .+.+++.||.++++.++++||+|+++|+||+|++++
T Consensus        78 s~~g~~~v~vD~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~  154 (504)
T 2d4w_A           78 TNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDELGGDEG---AEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAE  154 (504)
T ss_dssp             EECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHCSSC---GGGGHHHHSCCSCTTSHHHHHHHHHHHSTTHHHHHH
T ss_pred             eCCCCeEEEEECCCCCCccccceecccChHHHHHHHHhhcc---hHHHHHHhCCCCCchhHHHHHHHHHHcChhHHHHHh
Confidence            99999999999844999999999999999999999987553   367889999999999999999999999999999997


Q ss_pred             cccccccchhHHHHHhhcCCC--e---eeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec-C
Q psy9709         313 ENRCLFGTVDTWLVWNLTGRT--C---HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS-N  386 (500)
Q Consensus       313 ~~~~~~~~~~dyi~~~LTg~g--~---~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~-~  386 (500)
                      ++.+.|++++|||.|+||  |  +   +++|+|+|++|++||+++++|++++|+.+||+.++||+|+++++++|.+.. .
T Consensus       155 ~~~~~~~~~~d~l~~~LT--G~~~~~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~i~~~~~~~G~~~~~~  232 (504)
T 2d4w_A          155 KGDLLFGNTDTWVLWNMT--GGTEGGVHVTDVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPDIRSSSEVYGHGRPRG  232 (504)
T ss_dssp             HTCEEEECHHHHHHHHHT--TTTTTCCCEEEHHHHTTTTCEETTTTEECHHHHHHTTCCGGGSCEEECSEEEEEECCTTS
T ss_pred             cCCeEEecHHHHHHHHhc--CCCcCCceeeehhhhhhhcCccCCCCccCHHHHHHhCCCHHHCCCccCCccceeccchHH
Confidence            334449999999999999  5  6   999999999999999999999999999999999999999999999998653 1


Q ss_pred             -Cc-------------------------------ceEEEEEeec---------------CCCCc---eeeechhhhchhH
Q psy9709         387 -NG-------------------------------LVTTVAYQFG---------------PDATP---IYALEGSIAVAGA  416 (500)
Q Consensus       387 -~G-------------------------------~~~~~~~~~~---------------~~~p~---~~~~~g~~~~~G~  416 (500)
                       .|                               ....+....+               ...|+   .|..+|+++++|.
T Consensus       233 ~~G~~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~  312 (504)
T 2d4w_A          233 LVPGVPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIGDAPAVYALEGSIAVTGS  312 (504)
T ss_dssp             SSTTCEEEEEEEHHHHHHHHTTCCSTTEEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCTTSCCEEEEEEEESCSHH
T ss_pred             hCCCCeEEEECCcHHHHHhhCCCCCCCcEEEEcchhheeeeecCCccccCCCCcEEEEEEEcCCCCceEEEcchhhhHHH
Confidence             11                               0011111111               01245   7899999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9709         417 AVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDI  496 (500)
Q Consensus       417 ~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~  496 (500)
                      +++|+++.++...+|++++++++++++++|++|+|||.|+|+|+|||++||+|+|++..|+++|++||++||+||.+|.+
T Consensus       313 ~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~  392 (504)
T 2d4w_A          313 LVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHIARAALEATAFQSREV  392 (504)
T ss_dssp             HHHHHHHTTCTTTTCSCTHHHHTTSSSCTTCEEECTTCCCSTTTCCCCSCEEEEEECSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHhhCCCCCCEEEecCCCCCCCCCCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999998876556778888888888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHhC
Q psy9709         497 LELY  500 (500)
Q Consensus       497 ~~~~  500 (500)
                      ++.|
T Consensus       393 ~~~l  396 (504)
T 2d4w_A          393 VDAM  396 (504)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9864

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=100.00  E-value=1.1e-58  Score=489.02  Aligned_cols=328  Identities=23%  Similarity=0.341  Sum_probs=282.6

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      +++|||+|||++|++++|.+ |+++...+.+++...+++||.+||+++||+++++++++++++.     ...+|.+|||+
T Consensus         1 ~~lgiDiGtt~~k~~l~d~~-g~~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~-----~~~~i~~Igis   74 (484)
T 2itm_A            1 MYIGIDLGTSGVKVILLNEQ-GEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH-----SLQDVKALGIA   74 (484)
T ss_dssp             CEEEEEECSSEEEEEEECTT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHS-----CCTTCCEEEEE
T ss_pred             CEEEEEecCcccEEEEECCC-CCEEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHhC-----CccceEEEEEc
Confidence            36899999999999999985 9999999999998899999999999999999999999988651     24679999999


Q ss_pred             CCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhhc
Q psy9709         234 NQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKE  313 (500)
Q Consensus       234 ~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~  313 (500)
                      ++++++++||+ +|+|++|+|.|+|.|+.++++++.+..+     .+++.||.++++.++++||+|+++|+||+|++++ 
T Consensus        75 ~~~~~~v~~D~-~G~~l~~~i~w~D~R~~~~~~~l~~~~~-----~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~~-  147 (484)
T 2itm_A           75 GQMHGATLLDA-QQRVLRPAILWNDGRCAQECTLLEARVP-----QSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQID-  147 (484)
T ss_dssp             ECSSCBEEECT-TCCBCSCEECTTCCTTHHHHHHHHHHCT-----THHHHHSSCCCTTSHHHHHHHHHHHCHHHHTTCC-
T ss_pred             CCcCcEEEECC-CcCCCcccceecccCcHHHHHHHHHhHH-----HHHHHhCCCCCcccHHHHHHHHHHhChHHHHHHh-
Confidence            99999999999 6999999999999999999999988753     2566799999999999999999999999999887 


Q ss_pred             ccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC----C--
Q psy9709         314 NRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN----N--  387 (500)
Q Consensus       314 ~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~----~--  387 (500)
                         +++.++|||.|+||  |+.++|+|+|++|++||+++++|++++|+.+||+.++||+|+++++++|.+...    .  
T Consensus       148 ---~~l~~~d~l~~~LT--G~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lp~i~~~~~~~G~~~~~~a~~~Gl  222 (484)
T 2itm_A          148 ---KVLLPKDYLRLRMT--GEFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGM  222 (484)
T ss_dssp             ---EEECHHHHHHHHHH--SCCEEEHHHHHTTTCEETTTTEECHHHHHTTTCCGGGSCEEECTTSEEEECCHHHHHHHTS
T ss_pred             ---heeCcHHHHHHHHh--CCceeeHHHhhccccccCCCCCcCHHHHHHcCCCHHHCCCccCCcceeeccCHHHHHHhCC
Confidence               79999999999999  789999999999999999999999999999999999999999999999984321    0  


Q ss_pred             -c------------------------------ceEEEEEee--------------cCCCCceeeechhhhchhHHHHHHH
Q psy9709         388 -G------------------------------LVTTVAYQF--------------GPDATPIYALEGSIAVAGAAVKWLR  422 (500)
Q Consensus       388 -G------------------------------~~~~~~~~~--------------~~~~p~~~~~~g~~~~~G~~~~w~~  422 (500)
                       |                              ....+....              .+..|+.|.++++++++|.+++|++
T Consensus       223 ~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~~~W~~  302 (484)
T 2itm_A          223 ATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWAA  302 (484)
T ss_dssp             CCCEEECCEEHHHHHHHHHTCCSTTCEEEEESSSEEEEEECSSCCCCCSSSCEEEECSSTTCEEEEEEECCHHHHHHHHH
T ss_pred             CCCeEEEEchHHHHHHHhCCCCCCCcEEEEccchheeEEecCCCccCcccceEEeecccCCeeeeeehhhhHHHHHHHHH
Confidence             1                              101111100              0124678999999999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         423 DNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       423 ~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      +.++. .+|+.+.+++++.+ ++++++|+|||.|+|+|+||+++||+|+|++.+|+++|++||++||+||.+|++++.|
T Consensus       303 ~~~~~-~~~~~~~~~a~~~~~~~~gl~~lP~~~G~r~P~~~~~a~g~~~Gl~~~~~~~~~~rAvlEgia~~~~~~~~~l  380 (484)
T 2itm_A          303 KLTGL-SNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVV  380 (484)
T ss_dssp             HHTTC-CSHHHHHHHGGGCCTTSCCCEEEEEEC--------CCEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCc-ccHHHHHHHHhcCCCCCCCeEEeCCCCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98864 46888888877765 9999999999999999999999999999999999999999999999999999999864

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=100.00  E-value=9.9e-58  Score=483.30  Aligned_cols=325  Identities=21%  Similarity=0.297  Sum_probs=280.8

Q ss_pred             cCCEEEEEeccCCCceEEEEe-CCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIIS-ALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT  229 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d-~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~  229 (500)
                      .++|+||||+|||++|+++|| .+ |+++...+.++      ++|.+||+++||++++++++++       +. ..+|.+
T Consensus         3 ~~~~~lgIDiGtts~ka~l~d~~~-G~i~~~~~~~~------~g~~e~d~~~~~~~i~~~l~~~-------~~-~~~I~~   67 (515)
T 3i8b_A            3 LRTLVAGVDTSTQSCKVRVTDAET-GELVRFGQAKH------PNGTSVDPSYWWSAFQEAAEQA-------GG-LDDVSA   67 (515)
T ss_dssp             CSCEEEEEEECSSEEEEEEEETTT-CCEEEEEEEEC------CSSSEECTHHHHHHHHHHHHHT-------TC-STTEEE
T ss_pred             CCcEEEEEEeccccEEEEEEECCC-CeEEEEEEEeC------CCCceECHHHHHHHHHHHHHhc-------CC-ccCceE
Confidence            467999999999999999999 64 99999887776      4789999999999998887653       23 478999


Q ss_pred             EEEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCC-C------------ccchhhcccCCCCchhchHHH
Q psy9709         230 LGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD-Q------------DKDYLKPICGLPVSPYFSALK  296 (500)
Q Consensus       230 I~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~-~------------~~~~~~~~tG~~~~~~~~~~k  296 (500)
                      ||+++|++++++||+ +|+|++|+|+|+|.|+.++++++.+.++. .            ..+++++.||.++++.++++|
T Consensus        68 Igis~q~~~~v~~D~-~G~pl~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~k  146 (515)
T 3i8b_A           68 LAVGGQQHGMVILDN-QGNVIRDAMLWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTK  146 (515)
T ss_dssp             EEEEECSSCBEEECT-TSCBCSCEECTTCCTTHHHHHHHHHHHHCSCCCTTCCSSHHHHHHHHHHHHHSSCCCTTSHHHH
T ss_pred             EEEeCCcceEEEECC-CCCCcCCcceecCCCHHHHHHHHHHhcCcccccccccccccchhHHHHHHHHCCCCCchhHHHH
Confidence            999999999999999 79999999999999999999999886531 0            015788999999999999999


Q ss_pred             HHHHHhhChHHHHHhhcccccccchhHHHHHhhcCCCe-------------eeeecccccccccccCCCCCCcHHHHhhc
Q psy9709         297 LSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC-------------HVTDVTNASRTMLMNIDSLQWDPLLCKYF  363 (500)
Q Consensus       297 l~Wl~~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g~-------------~~~d~s~as~t~l~d~~~~~W~~~ll~~~  363 (500)
                      |+|+++|+||+|++++    +|++++|||.|+||  |+             +++|+|+|++|++||+++++|++++|+.+
T Consensus       147 l~Wl~~~~Pe~~~~~~----~~l~~~dyl~~~LT--G~~~~~~~~~~~~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~  220 (515)
T 3i8b_A          147 VAWVAENEPENVKKIA----AICLPHDWLSWRIA--GYGPVAEGEDAHLEALFTDRSDASGTIYYDAASNEYRRDLIAMV  220 (515)
T ss_dssp             HHHHHHHCHHHHTTCS----EEECHHHHHHHHHT--TCCCCCTTSCCCGGGCEEEHHHHTTSSSEETTTTEECHHHHHHH
T ss_pred             HHHHHHcChHHHHHHh----eecCHHHHHHHHhc--CCCcccccccccccceeecHHHhhcccCeeCCcCccCHHHHHhh
Confidence            9999999999999887    89999999999999  55             68999999999999999999999999998


Q ss_pred             -CCC-----------CCCCCCcccCCcccceeecC----Ccce-----------------------EEEEEeecC-----
Q psy9709         364 -AVP-----------PTILPEIRSSSEIYGKVHSN----NGLV-----------------------TTVAYQFGP-----  399 (500)
Q Consensus       364 -gl~-----------~~~lP~i~~~~~~~G~~~~~----~G~~-----------------------~~~~~~~~~-----  399 (500)
                       ||+           .++||+|+++++++|.+...    .|+.                       ..+...+|+     
T Consensus       221 ~gi~~~~~~~~~~~~~~~LP~i~~~~~~~G~v~~~~A~~~Gl~~g~pV~~g~~D~~aa~lG~g~~~g~~~~s~GTs~~~~  300 (515)
T 3i8b_A          221 LEAAEGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNVEGGCLLAPGGGDNAMASLGLGMAVGDVSISLGTSGVAA  300 (515)
T ss_dssp             HHHHHCHHHHHHHHHHSBCCEEECTTCCCSSCCCTTTTTTTSTTCCEECCCEEHHHHHHHHTTCCTTEEEEEESSSEEEE
T ss_pred             cCCCcccccccccchHHHCCCCcCCcCcccCcCHHHHHHhCCCCCCeEEEECchHHHHHhhCCCCCCcEEEEechhhhhh
Confidence             998           78999999999999985431    1110                       000001110     


Q ss_pred             ------------------CCCceeeechhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCC
Q psy9709         400 ------------------DATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPY  460 (500)
Q Consensus       400 ------------------~~p~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~  460 (500)
                                        ..+|.|+.++++.++|.+++|+++.++.  +|+++++++++++ ++++++|+|||.|+|+|+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~gg~~l~w~~~~~~~--~~~~l~~~a~~~~~g~~gl~~lP~~~Ger~P~  378 (515)
T 3i8b_A          301 AISENPTYDLTGAVSGFADCTGHYLPLACTINGSRILDAGRAALGV--DYDELAKLAFASKPGANGITLVPYFDGERTPN  378 (515)
T ss_dssp             ECBSSCCCCTTSCSEEEECSSSSEEEEEEESCSTHHHHHHHHHHTC--CHHHHHHHHHHSCTTGGGCEEECCTTCBTTTT
T ss_pred             cccCccccCCCCcEEeeecCCCCEEEeeecccHHHHHHHHHHHhCC--CHHHHHHHHHhCCCCCCCeEEecCCCCCcCCC
Confidence                              1256788888899999999999998864  6999999999986 889999999999999997


Q ss_pred             CCCCCcEEEEcCCCCC-CHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         461 WRKDARGVICGMTQFT-TKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       461 ~~~~~~g~f~Gl~~~~-~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      + |++||+|+|++..| +++||+||++||+||.+|++++.|
T Consensus       379 ~-~~arg~~~Gl~~~~~~~~~l~RAvlEgia~~~r~~l~~l  418 (515)
T 3i8b_A          379 R-PNATATFSGMTLANTTRENLARAFVEGLLCSQRDCLELI  418 (515)
T ss_dssp             B-TTCCCEEESCCTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-cCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6 99999999999999 999999999999999999999864

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*

Probab=100.00  E-value=4.6e-57  Score=483.53  Aligned_cols=331  Identities=22%  Similarity=0.298  Sum_probs=282.0

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      .++|+||||+|||++|+++||.+ |++++..+.+++..+|++||.|||+++||+++++++++++++.   ++++.+|.+|
T Consensus         3 ~~~~~lgIDiGtts~ka~l~d~~-G~il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~~~~~~~---~~~~~~I~~I   78 (554)
T 3l0q_A            3 LASYFIGVDVGTGSARAGVFDLQ-GRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQA---DINPIQVKGL   78 (554)
T ss_dssp             -CCEEEEEEECSSEEEEEEEETT-SCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHH---TCCGGGEEEE
T ss_pred             CCcEEEEEEECcccEEEEEECCC-CCEEEEEEEecccccCCCCccccCHHHHHHHHHHHHHHHHHHc---CCCHhHEEEE
Confidence            35699999999999999999975 9999999999998889999999999999999999999998763   5667789999


Q ss_pred             EEcCCCceeEEEeCCCCccc---------ccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHH
Q psy9709         231 GITNQRETTVVWDLNTGEPL---------YNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLI  301 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l---------~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~  301 (500)
                      |+++| +++|+||+ +|+|+         +|+|+|+|.|+.++++++.+..     +++++.||.+++++++++||+||+
T Consensus        79 gis~~-~~~v~~D~-~G~pl~~~~~~~~~~~ai~W~D~Ra~~~~~~l~~~~-----~~~~~~tG~~~~~~~~~~Kl~Wl~  151 (554)
T 3l0q_A           79 GFDAT-CSLVVLDK-EGNPLTVSPSGRNEQNVIVWMDHRAITQAERINATK-----HPVLEFVGGVISPEMQTPKLLWLK  151 (554)
T ss_dssp             EEEEC-SCEEEEET-TSCBCCCSTTCCTTCCEECTTCCTTHHHHHHHHHHT-----CGGGGGBTTCCCTTSHHHHHHHHH
T ss_pred             EEcCC-CceEEECC-CCCEeeccCCCCCCCCcEEecccchHHHHHHHHHhH-----HHHHHHhCCCCChhhHHHHHHHHH
Confidence            99998 79999999 69999         7999999999999999998862     458899999999999999999999


Q ss_pred             hhChHHHHHhhcccccccchhHHHHHhhcCCCeeeeecccccccc--cccCCCCCCcHHHHhhcCCCCC------CCC-C
Q psy9709         302 QNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTM--LMNIDSLQWDPLLCKYFAVPPT------ILP-E  372 (500)
Q Consensus       302 ~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~--l~d~~~~~W~~~ll~~~gl~~~------~lP-~  372 (500)
                      +|+||+|++++    +|++++|||.|+||  |+..  +++++.++  .||+++++|++++|+.+||+..      +|| +
T Consensus       152 ~~~Pe~~~~~~----~~~~~~dyl~~~LT--G~~~--~s~as~t~~~~~d~~~~~W~~~ll~~~gi~~~~~~~~~~Lp~~  223 (554)
T 3l0q_A          152 QHMPNTWSNVG----HLFDLPDFLTWRAT--KDET--RSLCSTVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGAT  223 (554)
T ss_dssp             HHCHHHHHHEE----EEEEHHHHHHHHHH--SCCC--EEHHHHHHHSCCBTTTTBCCHHHHHHHTCGGGGHHHHTTTCSC
T ss_pred             HhChHHHHHhc----eEEcHHHHHHHHHh--CCcc--ccccchhhccccccccCCCCHHHHHHcCCccccchhHHhCCCc
Confidence            99999999987    89999999999999  5564  56666665  4788999999999999999962      899 6


Q ss_pred             cccCCcccc-eeec---------------------------CCcce---E-------EEEEeec----------------
Q psy9709         373 IRSSSEIYG-KVHS---------------------------NNGLV---T-------TVAYQFG----------------  398 (500)
Q Consensus       373 i~~~~~~~G-~~~~---------------------------~~G~~---~-------~~~~~~~----------------  398 (500)
                      |+++++++| .+..                           ..|..   .       ......|                
T Consensus       224 i~~~~~~~G~~lt~~~A~~~GL~~g~pV~~g~gD~~aa~lg~~G~~~~~G~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~  303 (554)
T 3l0q_A          224 VKPMGAPLGHGLSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTGENANFDRRIALIGGTSTAHMAMSRSAHFIS  303 (554)
T ss_dssp             EECTTCBCTTSSCHHHHHHHTCCTTCEEBCCEEHHHHHHHHHTTCCCTTSCCCCTTTEEEEECSSSEEEEEEESSCCCCT
T ss_pred             ccCCcCeeCcccCHHHHHHhCCCCCCeEEEeChHHHhHHhhccccccCCCccccccceEEEEecchheeeeecCCccccC
Confidence            999999999 5221                           00111   0       1111111                


Q ss_pred             --------CCCCceeeechhhhchhHHHHHHHHHcCC------------CCCHHHHHHHHHhcC-C-------CCCeEEe
Q psy9709         399 --------PDATPIYALEGSIAVAGAAVKWLRDNLNL------------MDNVRETESLAEKVM-T-------TGDVYFV  450 (500)
Q Consensus       399 --------~~~p~~~~~~g~~~~~G~~~~w~~~~~~~------------~~~~~~l~~~~~~~~-~-------~~~l~~~  450 (500)
                              +..|+.|.++|+++++|.+++|+++.++.            .+.|+.+++++++.+ +       ++|++|+
T Consensus       304 ~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gl~fl  383 (554)
T 3l0q_A          304 GIWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEPENIAFLTNDIHML  383 (554)
T ss_dssp             TSEEEEETSSSTTCEEEEEEESCSHHHHHHHHHTSTTHHHHHHHHHHTTCCHHHHHHHHHHHHHSSGGGGGGGGTTCCEE
T ss_pred             CcceeecccccCCceEecchhhhhHHHHHHHHHhcccchHHHHHHHhcCCCHHHHHHHHHHhcCCCCCccccccCceEEc
Confidence                    12367899999999999999999998752            234777777766653 3       7899999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEcCCCCCCHHHH---HHHHHHHHHHHHHHHHHhC
Q psy9709         451 PAFGGLYAPYWRKDARGVICGMTQFTTKGHI---IRAALEAICFQTRDILELY  500 (500)
Q Consensus       451 P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l---~rAv~Egia~~~~~~~~~~  500 (500)
                      |||.|+|+|+|||++||+|+||+.+|+++||   +||++||+||++|+++|.|
T Consensus       384 P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~r~~rAvlEgia~~~r~~~e~l  436 (554)
T 3l0q_A          384 PYFHGNRSPRANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIETM  436 (554)
T ss_dssp             CCTTCBCSSSCBTTCCCEECSCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999   8999999999999999864

>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*

Probab=100.00  E-value=2.3e-55  Score=468.56  Aligned_cols=329  Identities=14%  Similarity=0.107  Sum_probs=275.3

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCC----CCeE-------EEChHH-HHHHHHHHHHHHHHHHHh
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQ----EGWA-------EQDPME-ILQAVQTTMDRAIEKLSA  219 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~----~g~~-------~~d~~~-~~~~i~~~l~~~~~~~~~  219 (500)
                      ++|+||||+|||++|+++||.+ |++++..+.+++..+|+    +||.       ||||++ ||+++..+++.+ .+   
T Consensus         9 ~~~~lgID~GTts~Ka~l~d~~-G~vv~~~~~~~~~~~p~~~~~~g~~e~~~g~~eqdp~~~w~~~~~~~~~~l-~~---   83 (538)
T 4bc3_A            9 RRCCLGWDFSTQQVKVVAVDAE-LNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEKM-KA---   83 (538)
T ss_dssp             CCEEEEEEECSSEEEEEEEETT-CCEEEEEEEEHHHHSGGGCCBTTBEECTTSSCEEEEHHHHHHHHHHHHHHH-HH---
T ss_pred             CCEEEEEEEcCcCEEEEEECCC-CCEEEEEEEecCCcCCcccCCCCeeecCCCccccCcHHHHHHHHHHHHHHH-HH---
Confidence            4699999999999999999974 99999999999876664    6775       678875 666665555443 32   


Q ss_pred             CCCCCCCeeEEEEcCCCceeEEEeCCCCc--------------------ccccceeeccCCCHHHHHHHHhhCCCCccch
Q psy9709         220 HGLSRDDIVTLGITNQRETTVVWDLNTGE--------------------PLYNAIVWSDTRADNIVDQVLAKFPDQDKDY  279 (500)
Q Consensus       220 ~~~~~~~I~~I~vs~~~~~~v~~d~~~G~--------------------~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~  279 (500)
                      .++++.+|++||||+|++++|+||+ +|+                    |++|+|+|+|.|+.++++++.+.++.  .++
T Consensus        84 ~~~~~~~I~aIgis~q~~~~v~~D~-~g~~~l~~l~~~~~l~~~~~~~~pl~~ai~W~D~R~~~~~~~l~~~~~~--~~~  160 (538)
T 4bc3_A           84 SGFDFSQVLALSGAGQQHGSIYWKA-GAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQCRQLEAAVGG--AQA  160 (538)
T ss_dssp             TTCCGGGEEEEEEEECSSCEEEEET-THHHHHHTCCTTSCHHHHHTTCBSCSEEECTTCCCCHHHHHHHHHHHTS--HHH
T ss_pred             cCCChHHeEEEEecccceeEEEECC-CccccccccccccchhhhccccccccCCcccccCcHHHHHHHHHHhhCc--HHH
Confidence            5677889999999999999999999 565                    99999999999999999999987642  367


Q ss_pred             hhcccCCCCchhchHHHHHHHHhhChHHHHHhhcccccccchhHHHHHhhcCCCeee-eecccccccccccCCCCCCcHH
Q psy9709         280 LKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV-TDVTNASRTMLMNIDSLQWDPL  358 (500)
Q Consensus       280 ~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g~~~-~d~s~as~t~l~d~~~~~W~~~  358 (500)
                      +++.||.++++.++++||+|+++|+||+|++++    +|++++|||.|+||  |+.+ +|+|+|++|++||+++++|+++
T Consensus       161 ~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~----~~~~~~d~l~~~LT--G~~~~td~s~As~t~l~d~~~~~W~~~  234 (538)
T 4bc3_A          161 LSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTE----RISLVSSFAASLFL--GSYSPIDYSDGSGMNLLQIQDKVWSQA  234 (538)
T ss_dssp             HHHHHSSCCCTTSHHHHHHHHHHHCHHHHHTEE----EEEEHHHHHHHHHH--TSCCCCBHHHHTTSSCEETTTTEECHH
T ss_pred             HHHHHCCCCccccHHHHHHHHHHcCHHHHHHhh----eEEcHHHHHHHHHh--CCCcccccchhhcccccccccCCCCHH
Confidence            899999999999999999999999999999987    89999999999999  7787 9999999999999999999999


Q ss_pred             HHhhcCCC-CCCCCCcccCCcccceeecC----Cc---------------------------------ceEEEEEeecC-
Q psy9709         359 LCKYFAVP-PTILPEIRSSSEIYGKVHSN----NG---------------------------------LVTTVAYQFGP-  399 (500)
Q Consensus       359 ll~~~gl~-~~~lP~i~~~~~~~G~~~~~----~G---------------------------------~~~~~~~~~~~-  399 (500)
                      +|+.+|++ .++||+|+++++++|.+...    .|                                 ....+....+. 
T Consensus       235 ll~~~gi~~~~~LP~i~~~~~~~G~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~~~~~g~~~~s~GTs~~~~~~~~~~  314 (538)
T 4bc3_A          235 CLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDIAVSLGTSDTLFLWLQEP  314 (538)
T ss_dssp             HHHHHCTTHHHHHCCCBCSSCEEEECCHHHHHHHCCCTTCEEECCEEHHHHHHHHTTCCTTCEEEEESSSEEEEEEESSC
T ss_pred             HHHHhCccHHHHCCCcccccccccccCHHHHHHhCCCCCCeEEEecccHHhhhhccccCCCcEEEEeccchheEEecCCC
Confidence            99999998 78999999999999984321    01                                 11111111111 


Q ss_pred             -----------CC-CceeeechhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCc
Q psy9709         400 -----------DA-TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDAR  466 (500)
Q Consensus       400 -----------~~-p~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~  466 (500)
                                 .. ++.|..+++++++|.+++|+++.++. .+|+++++++++++ +++|++|+|||.|||+|+    +|
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~w~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~lp~~~Ger~P~----~~  389 (538)
T 4bc3_A          315 MPALEGHIFCNPVDSQHYMALLCFKNGSLMREKIRNESVS-RSWSDFSKALQSTEMGNGGNLGFYFDVMEITPE----II  389 (538)
T ss_dssp             CCCSSSEEEEETTEEEEEEEEEEESSSHHHHHHHHHHHST-TCHHHHHHHHHTSCTTGGGCEEEEESSCCSSSC----CC
T ss_pred             CCCCCcceEEeecCCCCEEEeehhhccchHHHHHHHHhcC-CCHHHHHHHHhcCCCCCCCeEEeecCCCCcCCC----CC
Confidence                       11 24578888888999999999998863 57999999999887 899999999999999996    56


Q ss_pred             EEEE------cCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         467 GVIC------GMTQFTTKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       467 g~f~------Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      |.|+      |++. |+++||+||++||+||.+|.+++.|
T Consensus       390 G~~~~~~~~~g~~~-~~~~~l~RAvlEgia~~~r~~~~~l  428 (538)
T 4bc3_A          390 GRHRFNTENHKVAA-FPGDVEVRALIEGQFMAKRIHAEGL  428 (538)
T ss_dssp             EEEEECTTSCEESC-CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceeeeccccccccC-CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7775      2333 8999999999999999999999865

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=9.5e-54  Score=448.21  Aligned_cols=316  Identities=13%  Similarity=0.120  Sum_probs=257.9

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      |++|++|||+|||++|+++||. +|+++...+.+++. .+++||.|||+++||+++++++++++ +        .+|.+|
T Consensus         4 mm~~~lgIDiGTts~Ka~l~d~-~G~i~~~~~~~~~~-~~~~g~~eqdp~~~~~~~~~~i~~~~-~--------~~I~aI   72 (482)
T 3h6e_A            4 STGATIVIDLGKTLSKVSLWDL-DGRMLDRQVRPSIP-LEIDGIRRLDAPDTGRWLLDVLSRYA-D--------HPVTTI   72 (482)
T ss_dssp             ----CEEEEECSSEEEEEEECT-TSCEEEEEEEECCC-EESSSCEECCHHHHHHHHHHHHHHTT-T--------SCCCEE
T ss_pred             hhceEEEEEcCCCCeEEEEEEC-CCcEEEEEEecCCc-ccCCCceeECHHHHHHHHHHHHHHHH-h--------cCCCEE
Confidence            4568999999999999999996 59999999999985 57899999999999999999988875 2        579999


Q ss_pred             EEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchh--chHHHHHHHHhhChHHH
Q psy9709         231 GITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPY--FSALKLSWLIQNVSSVR  308 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~--~~~~kl~Wl~~~~pe~~  308 (500)
                      ||++|++++++|| + |+|++|+|.|+|.|+.++++++.+..+      .++.||.+++++  ++++||+|+++|+||+|
T Consensus        73 gis~~~~~~v~~D-~-G~pl~~ai~w~D~R~~~~~~~l~~~~~------~~~~tG~~~~~~~~~~~~kl~Wl~~~~Pe~~  144 (482)
T 3h6e_A           73 VPVGHGAGIAALT-D-GRLAFPPLDYEQSIPEAVMADYRSQRD------PFARTGSPALPDGLNIGSQLWWLDQLHPDVM  144 (482)
T ss_dssp             EEEECSSCEEEEE-T-TEECSCCBCTTSCCCHHHHHHHHTTCC------CHHHHCCCCCSTTSSHHHHHHHHHHHSHHHH
T ss_pred             EEecCcCCEEEEC-C-CCEeccccccCCcccHHHHHHHHhhCh------HHHHhCCCCCCCchhHHHHHHHHHHcCchhh
Confidence            9999999999999 5 999999999999999999999987542      268899999998  89999999999999999


Q ss_pred             HHhhcccccccchhHHHHHhhcCCCeeeeeccc-ccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec--
Q psy9709         309 RAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTN-ASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS--  385 (500)
Q Consensus       309 ~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~-as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~--  385 (500)
                      +++    . |++++|||.|+||  |+.++|+|+ ||+|++||+++++|+ ++|+.+||+ ++||+|+++++++|.+.+  
T Consensus       145 ~~~----~-~l~~~dyl~~~LT--G~~~td~s~~As~t~l~d~~~~~W~-~ll~~~gi~-~~LP~v~~~~~~~G~l~~~~  215 (482)
T 3h6e_A          145 ANA----T-LLPWAQYWAWFLT--GRAVSEVTSLGCHSDLWDPQDGDFS-PMAKRLGWA-ARFAPIVRAGDTVGALLPAI  215 (482)
T ss_dssp             HSC----E-EEEHHHHHHHHTT--SCCCEEHHHHTTTCSSEETTTTEEC-HHHHHTTCG-GGBCCEECTTSEEEECCHHH
T ss_pred             hcC----E-EEccHHHHHHHHh--CCeeeecchhhhccCCccCCcCcHH-HHHHHcCCH-HhCCCCcCCCceeeeeCHHH
Confidence            876    3 8999999999999  789999998 899999999999999 599999999 899999999999998321  


Q ss_pred             ------------------------C---Ccc-----eEEE-------EEeecC---C----CC--c--------eeeech
Q psy9709         386 ------------------------N---NGL-----VTTV-------AYQFGP---D----AT--P--------IYALEG  409 (500)
Q Consensus       386 ------------------------~---~G~-----~~~~-------~~~~~~---~----~p--~--------~~~~~g  409 (500)
                                              .   .|.     ...+       ....+.   .    .|  +        .|.+++
T Consensus       216 A~~~GL~~g~pV~~g~~D~~aa~lG~~g~g~~~~g~~~~~s~GT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  295 (482)
T 3h6e_A          216 AERTGLSPDVQVLAGLHDSNAALLAARGFAEIADNEATVLSTGTWFIAMRLPATPVDTATLPEARDCLVNVDVHGRPVPS  295 (482)
T ss_dssp             HHHHTCCTTCEEECCEEHHHHHHHHHTTSTTTTTSSEEEEECSSSEEEEEECSSCCCGGGCCGGGTEEEEECTTSCEEEE
T ss_pred             HHHhCCCCCCEEEEeCcHHHHHHhhhhccCCcCCCCEEEEECCceeEEEEecCccCCccccchhhceeeccccccccccc
Confidence                                    1   111     0011       111122   1    01  1        134566


Q ss_pred             hhhchhHHHHHHHHHcCCCCC--HHHHHHHHHhc-CCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHH
Q psy9709         410 SIAVAGAAVKWLRDNLNLMDN--VRETESLAEKV-MTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAAL  486 (500)
Q Consensus       410 ~~~~~G~~~~w~~~~~~~~~~--~~~l~~~~~~~-~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~  486 (500)
                      ...++|.+++|+++......+  ++..+.+++.. ++++|++|+|||.|+|+|+||+  ||+|+||+.    +|++||++
T Consensus       296 ~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~a~~~~~g~~Gl~flP~l~Ger~P~~d~--rG~~~Gl~~----~~l~RA~l  369 (482)
T 3h6e_A          296 ARFMGGREIETLIEIDTRRVDIKPDQPALLAAVPEVLRHGRMILPTLMRGFGPYPHG--RFAWINRPE----DWFERRAA  369 (482)
T ss_dssp             EEECHHHHHHHHHCSGGGCTTCGGGHHHHHHTHHHHHHTTCEEESCSSTTCSSCTTC--CCEEESCCS----SHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhcccccccccchhhHHHhccccCCCCeEEecCCCCCCCCCCCC--ceEEeCCCH----HHHHHHHH
Confidence            677899999999654432211  22223233333 4889999999999999999987  999999999    79999999


Q ss_pred             HH--HHHHHHHHHHhC
Q psy9709         487 EA--ICFQTRDILELY  500 (500)
Q Consensus       487 Eg--ia~~~~~~~~~~  500 (500)
                      |+  +||++|+++|.|
T Consensus       370 E~~Gia~~~r~~l~~~  385 (482)
T 3h6e_A          370 ACLYAALVADTALDLI  385 (482)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHhHHHHHHHHHHHh
Confidence            95  999999999876

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*

Probab=100.00  E-value=3.1e-50  Score=425.32  Aligned_cols=322  Identities=16%  Similarity=0.202  Sum_probs=262.0

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecc----cccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS----TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD  226 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~----~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~  226 (500)
                      .+++++|||+|||++|++++|.+ |+++...+.++.    ...+++||.+||+++||+++.++++++...       ..+
T Consensus         2 ~~~~~lgiDiGtts~k~~l~d~~-g~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~~~~~~~~-------~~~   73 (489)
T 2uyt_A            2 TFRNCVAVDLGASSGRVMLARYE-RECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAA-------GIA   73 (489)
T ss_dssp             CCEEEEEEEECSSEEEEEEEEEE-GGGTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHT-------TCC
T ss_pred             CcceEEEEEecCCCceEEEEEec-CccceEEEEEEeecCCCccccCCeEEECHHHHHHHHHHHHHHHHhC-------CCC
Confidence            35578999999999999999985 988776655433    235678999999999999999999887641       357


Q ss_pred             eeEEEEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChH
Q psy9709         227 IVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS  306 (500)
Q Consensus       227 I~~I~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe  306 (500)
                      |.+|||++|+++.++||+ +|+|++|+|.|+|.|+.++++++.+..+   .+.+++.||.++++.++++||+|+++|+||
T Consensus        74 i~~Igis~q~~~~v~~D~-~G~~l~~~i~w~D~R~~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~  149 (489)
T 2uyt_A           74 IDSIGIDTWGVDFVLLDQ-QGQRVGLPVAYRDSRTNGLMAQAQQQLG---KRDIYQRSGIQFLPFNTLYQLRALTEQQPE  149 (489)
T ss_dssp             CCEEEEEECSSCEEEECT-TSCEESCCBCTTCGGGTTHHHHHHHHHC---HHHHHHHHCCCCCTTSHHHHHHHHHHHCGG
T ss_pred             ceEEEEecCcccEEEECC-CCCCccCCccccCCccHHHHHHHHHhcC---HHHHHHHhCCCCCCccHHHHHHHHHhcCch
Confidence            999999999999999999 6999999999999999999999987654   257889999999999999999999999999


Q ss_pred             HHHHhhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC
Q psy9709         307 VRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN  386 (500)
Q Consensus       307 ~~~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~  386 (500)
                      +|++++    +++.++|||.|+||  |++++|+|+|++|++||+++++|++++|+.+||+.++||+|+++++++|.+...
T Consensus       150 ~~~~~~----~~l~~~dyl~~~LT--G~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~i~~~~~~~G~~~~~  223 (489)
T 2uyt_A          150 LIPHIA----HALLMPDYFSYRLT--GKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICP  223 (489)
T ss_dssp             GGGGCC----EEEEHHHHHHHHHH--SCCCCBHHHHGGGTCEETTTTEECHHHHHHHTCCGGGSCCCBCTTCEEEEEECT
T ss_pred             HHHHhh----hccCcHHHHHHHHh--CCccceehhhhhhcccccCcCccCHHHHHHcCCCHHHCCCccCCCcceeeeecc
Confidence            999887    88999999999999  779999999999999999999999999999999999999999999999985311


Q ss_pred             C---------c------------------------ceEEEEEeec----------------CCCCceeeechhhhchhHH
Q psy9709         387 N---------G------------------------LVTTVAYQFG----------------PDATPIYALEGSIAVAGAA  417 (500)
Q Consensus       387 ~---------G------------------------~~~~~~~~~~----------------~~~p~~~~~~g~~~~~G~~  417 (500)
                      .         |                        ....+.....                ...|+.|.+++.+.  |  
T Consensus       224 ~~~g~pV~~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g--  299 (489)
T 2uyt_A          224 QGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIM--G--  299 (489)
T ss_dssp             TCCEEEEECCCCBHHHHHHHHSCCCSTTEEEEEESSSEEEEEEESSCCCSHHHHHHTCEEECCGGGCEEEEEEEC--T--
T ss_pred             cCCCCcEEEECchHHHHHHhcCCCCCCCcEEEEEchHhhcccccCCCccCHHHHhhcceeecCCCCeEEEehhHh--H--
Confidence            0         0                        0011111100                01255666666544  2  


Q ss_pred             HHHHHHHcC---CCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCC-----CcEEEEcCC--CCCCHHHHHHHHHH
Q psy9709         418 VKWLRDNLN---LMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKD-----ARGVICGMT--QFTTKGHIIRAALE  487 (500)
Q Consensus       418 ~~w~~~~~~---~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~-----~~g~f~Gl~--~~~~~~~l~rAv~E  487 (500)
                       .|+++.+.   ..+.|+.+.+.++..|++++ +|+|    +|.|+++|+     ++|.|.|+.  ..|+++||+||++|
T Consensus       300 -~W~~~~~~~~~~~~~~~~l~~~a~~~~~~~~-l~~p----~~~~~~~p~~~~~~~~g~~~g~~~~~~~t~~~l~RAvlE  373 (489)
T 2uyt_A          300 -LWLLQRVLQERQINDLPALIAATQALPACRF-IINP----NDDRFINPDEMCSEIQAACREMAQPIPESDAELARCIFD  373 (489)
T ss_dssp             -THHHHHHHHHTTCCCHHHHHHHHTTSCSSSS-CCCT----TSGGGSSCSCHHHHHHHHHHHTTCCCCCSHHHHHHHHHH
T ss_pred             -HHHHHHhhcccchhhHHHHHHHhccCCCcCe-eECC----CCCccCChhhhHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence             58877652   12457777666654557654 4788    577888887     589998884  78999999999999


Q ss_pred             HHHHHHHHHHHhC
Q psy9709         488 AICFQTRDILELY  500 (500)
Q Consensus       488 gia~~~~~~~~~~  500 (500)
                      |+||.+|+++|.|
T Consensus       374 gia~~~r~~~~~l  386 (489)
T 2uyt_A          374 SLALLYADVLHEL  386 (489)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999864

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=99.88  E-value=9.5e-23  Score=216.56  Aligned_cols=108  Identities=35%  Similarity=0.597  Sum_probs=101.5

Q ss_pred             cCcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          22 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        22 ~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      +|+|++|||+||||+|++|||. +|++++..+.+++..+|++||+||||++||+++++++++++++   .++++++|+||
T Consensus         2 ekkYvlgID~GTss~Ka~l~d~-~G~~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~---~~~~~~~I~aI   77 (526)
T 3ezw_A            2 EKKYIVALDQGTTSSRAVVMDH-DANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAK---ADISSDQIAAI   77 (526)
T ss_dssp             -CCEEEEEEECSSEEEEEEECT-TCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---HTCCGGGEEEE
T ss_pred             CceEEEEEEccccceeeeEEcC-CCCEEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHHHHHHH---cCCChhhEEEE
Confidence            3568888999999999999998 9999999999999999999999999999999999999999988   78889999999


Q ss_pred             EEcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         102 GITNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       102 gis~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      |||+|++++|+||+++|+||+|+|+|+|+|..
T Consensus        78 gis~q~~~~v~~D~~~G~pl~~ai~W~D~R~~  109 (526)
T 3ezw_A           78 GITNQRETTIVWEKETGKPIYNAIVWQCRRTA  109 (526)
T ss_dssp             EEEECSSCBEEEETTTCCBSSCEECTTCCTTH
T ss_pred             EEeCCCCCEEEEECCCCeEcccceecCCcchH
Confidence            99999999999997569999999999998874

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=99.82  E-value=1.8e-20  Score=197.89  Aligned_cols=102  Identities=24%  Similarity=0.208  Sum_probs=95.5

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|||++|++|||. +|+++++.+.+++..+|++||+||||++||+++++++++++++   .+   .+|++|||
T Consensus         4 ~~~lgIDiGtts~K~~l~d~-~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~---~~---~~I~~Igi   76 (504)
T 3ll3_A            4 KYIIGMDVGTTATKGVLYDI-NGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQK---ID---GKIAAISW   76 (504)
T ss_dssp             EEEEEEEECSSEEEEEEEET-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHT---CS---SEEEEEEE
T ss_pred             CEEEEEEecCCceEEEEEcC-CCCEEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHh---CC---CCeEEEEE
Confidence            46778999999999999998 9999999999999999999999999999999999999999876   43   68999999


Q ss_pred             cCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         104 TNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      ++|++++|+||+ +|+|++|+|+|+|.|..
T Consensus        77 s~q~~~~v~~D~-~G~pl~~~i~W~D~R~~  105 (504)
T 3ll3_A           77 SSQMHSLIGLGS-DDELLTNSITWADNCAK  105 (504)
T ss_dssp             EECSSCBEEECT-TSCBSSCEECTTCCTTH
T ss_pred             ECCCCcEEEECC-CCCCcccceeCCccCHH
Confidence            999999999999 69999999999998875

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=99.81  E-value=3.2e-20  Score=196.32  Aligned_cols=104  Identities=21%  Similarity=0.199  Sum_probs=97.7

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|||++|++|||. +|+++++.+.+++..+|++||+||||++||+++++++++++ +   .++++.+|.+|||
T Consensus         5 ~~~lgIDiGtts~k~~l~d~-~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~-~---~~~~~~~I~~Igi   79 (511)
T 3hz6_A            5 FYIATFDIGTTEVKAALADR-DGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWW-Q---SGVDARRVSAIVL   79 (511)
T ss_dssp             CEEEEEEECSSEEEEEEECT-TSCEEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHH-T---TTCCGGGEEEEEE
T ss_pred             cEEEEEEeCCCceEEEEECC-CCCEEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHHHH-h---cCCChhHeEEEEE
Confidence            36777999999999999998 89999999999999999999999999999999999999998 6   7777889999999


Q ss_pred             cCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         104 TNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      ++|++++|+||+ +|+|++|+|+|+|.|..
T Consensus        80 s~q~~~~v~~D~-~G~pl~~~i~W~D~R~~  108 (511)
T 3hz6_A           80 SGQMQNFLPLDQ-DHEPLHRAVLYSDKRPL  108 (511)
T ss_dssp             EECCSCBEEECT-TSCBSSCEECTTCCCCH
T ss_pred             ecccccEEEECC-CcCCCcCceecCCCCHH
Confidence            999999999999 69999999999998874

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=99.81  E-value=6.2e-20  Score=194.41  Aligned_cols=109  Identities=39%  Similarity=0.572  Sum_probs=99.9

Q ss_pred             ccCcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709          21 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT  100 (500)
Q Consensus        21 m~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~  100 (500)
                      ||+.+++|||+|||++|++|||. +|+++++.+.+++..+|++||+||||++||+++++++++++++   .++++.+|.+
T Consensus        23 MM~~~~lgIDiGtts~k~~l~d~-~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~---~~~~~~~I~~   98 (520)
T 4e1j_A           23 MMGGYILAIDQGTTSTRAIVFDG-NQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEK---SGITANDIAA   98 (520)
T ss_dssp             CCSCEEEEEEECSSEEEEEEECT-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHT---TTCCGGGEEE
T ss_pred             HhhCeEEEEEeCCcceEEEEECC-CCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHh---cCCCcccEEE
Confidence            33457778999999999999998 9999999999999889999999999999999999999999877   7777889999


Q ss_pred             EEEcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         101 LGITNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       101 Igis~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      |||++|++++|+||+++|+|++|+|+|.|.|..
T Consensus        99 Igis~~g~~~v~~D~~~G~~l~~~i~W~D~R~~  131 (520)
T 4e1j_A           99 IGITNQRETVVVWDRETGKPIHNAIVWQDRRTA  131 (520)
T ss_dssp             EEEEECSSCEEEEETTTCCBSSCEECTTCCTTH
T ss_pred             EEEeCCcceEEEEECCCCeECccccccccCCHH
Confidence            999999999999994379999999999998874

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=99.81  E-value=5.5e-20  Score=194.38  Aligned_cols=107  Identities=35%  Similarity=0.537  Sum_probs=99.6

Q ss_pred             CcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          23 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        23 ~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      +.+++|||+|||++|++|||. +|+++++.+.+++..+|++||+||||++||+++++++++++++   .++++.+|.+||
T Consensus         4 ~~~~lgIDiGtts~k~~l~d~-~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~---~~~~~~~I~~Ig   79 (506)
T 3h3n_X            4 KNYVMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGIG   79 (506)
T ss_dssp             CCEEEEEEECSSEEEEEEEET-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---HTCCGGGEEEEE
T ss_pred             CCEEEEEEcCCCceEEEEECC-CCCEEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHH---cCCChhheEEEE
Confidence            357788999999999999998 9999999999999999999999999999999999999999887   677778999999


Q ss_pred             EcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      |++|+|++++||+++|+|++|+|+|+|.|..
T Consensus        80 is~~~~~~v~~D~~~G~~l~~~i~w~D~R~~  110 (506)
T 3h3n_X           80 ITNQRETTVVWDKTTGQPIANAIVWQSRQSS  110 (506)
T ss_dssp             EEECSSCBEEEETTTCCBSSCEECTTCCTTH
T ss_pred             eeCCcccEEEEeCCCCeECCCceEecCcchH
Confidence            9999999999999449999999999998875

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=99.81  E-value=5.5e-20  Score=194.37  Aligned_cols=105  Identities=20%  Similarity=0.206  Sum_probs=98.8

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|||++|++|||. +|+++++.+.+++..+|++||+||||++||+++++++++++++   .++++.+|.+|||
T Consensus         7 ~~~lgIDiGtts~k~~l~d~-~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~---~~~~~~~I~~Igi   82 (508)
T 3ifr_A            7 RQVIGLDIGTTSTIAILVRL-PDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTT---AGESDWRPGGICV   82 (508)
T ss_dssp             CEEEEEEECSSEEEEEEEET-TTEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---HCGGGCCEEEEEE
T ss_pred             CEEEEEEecCcceEEEEECC-CCCEEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHh---cCCChhheEEEEE
Confidence            57788999999999999998 9999999999999999999999999999999999999999887   6677789999999


Q ss_pred             cCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         104 TNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      ++|++++|+||+ +|+|++|+|+|+|.|..
T Consensus        83 s~~~~~~v~~D~-~G~~l~~~i~W~D~R~~  111 (508)
T 3ifr_A           83 TGMLPAVVLLDD-RGAVLRPSIQQSDGRCG  111 (508)
T ss_dssp             EECSSCBEEECT-TSCBCSCEECTTCCCCH
T ss_pred             ECCCCcEEEECC-CCCCcccceeccccChH
Confidence            999999999999 69999999999998874

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=99.79  E-value=2e-19  Score=189.94  Aligned_cols=106  Identities=37%  Similarity=0.549  Sum_probs=99.1

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|||++|++|||. +|+++++.+.+++..+|++||+||||++||+++++++++++++   .++++++|.+|||
T Consensus         6 ~~~lgIDiGtts~k~~l~d~-~G~il~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~~~~I~~Igi   81 (501)
T 3g25_A            6 KYILSIDQGTTSSRAILFNQ-KGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINE---NDVRADQIAGIGI   81 (501)
T ss_dssp             CEEEEEEECSSEEEEEEECT-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHT---TTCCGGGEEEEEE
T ss_pred             cEEEEEEeCccceEEEEEcC-CCCEEEEEEeecccccCCCCcEEECHHHHHHHHHHHHHHHHHh---cCCCcccEEEEEE
Confidence            46778999999999999998 9999999999999999999999999999999999999999887   7777889999999


Q ss_pred             cCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         104 TNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      ++|+|++++||+++|+|++|+|+|+|.|..
T Consensus        82 s~~~~~~v~~D~~~G~~l~~~i~w~D~R~~  111 (501)
T 3g25_A           82 TNQRETTVVWDKHTGRPIYHAIVWQSRQTQ  111 (501)
T ss_dssp             EECSSCEEEEETTTCCBSSCEECTTCCTTH
T ss_pred             ECCcCcEEEEECCCCeECCCceeeccCChH
Confidence            999999999999449999999999998875

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*

Probab=99.79  E-value=1.4e-19  Score=193.48  Aligned_cols=104  Identities=25%  Similarity=0.310  Sum_probs=97.3

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|||++|++|||. +|+++++.+.+++..+|++||+||||++||+++++++++++++   .+++..+|.+|||
T Consensus         5 ~~~lgIDiGtts~ka~l~d~-~G~il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~~~~~~---~~~~~~~I~~Igi   80 (554)
T 3l0q_A            5 SYFIGVDVGTGSARAGVFDL-QGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQ---ADINPIQVKGLGF   80 (554)
T ss_dssp             CEEEEEEECSSEEEEEEEET-TSCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHH---HTCCGGGEEEEEE
T ss_pred             cEEEEEEECcccEEEEEECC-CCCEEEEEEEecccccCCCCccccCHHHHHHHHHHHHHHHHHH---cCCCHhHEEEEEE
Confidence            47788999999999999998 9999999999999999999999999999999999999999987   6777889999999


Q ss_pred             cCCcceeEEeeCCCCCcc---------ccccccCCcccc
Q psy9709         104 TNQRETTVVWDLNTGEPL---------YNAIDKMPSLVY  133 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl---------~p~i~w~d~~~~  133 (500)
                      ++| +++|+||+ +|+||         +|+|+|+|.|..
T Consensus        81 s~~-~~~v~~D~-~G~pl~~~~~~~~~~~ai~W~D~Ra~  117 (554)
T 3l0q_A           81 DAT-CSLVVLDK-EGNPLTVSPSGRNEQNVIVWMDHRAI  117 (554)
T ss_dssp             EEC-SCEEEEET-TSCBCCCSTTCCTTCCEECTTCCTTH
T ss_pred             cCC-CceEEECC-CCCEeeccCCCCCCCCcEEecccchH
Confidence            999 89999999 69999         899999998864

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=99.77  E-value=6.8e-19  Score=185.75  Aligned_cols=105  Identities=33%  Similarity=0.524  Sum_probs=98.0

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|||++|++|||. +|+++++.+.+++..+|++||.||||++||+++++++++++++   .+++.++|.+|||
T Consensus         3 ~~~lgiDiGtt~~k~~l~d~-~g~~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~~~~i~~Igi   78 (497)
T 2zf5_O            3 KFVLSLDEGTTSARAIIFDR-ESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQS---ARIEPNQIAAIGV   78 (497)
T ss_dssp             CEEEEEEECSSEEEEEEECT-TCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHH---HTCCGGGEEEEEE
T ss_pred             cEEEEEecCCchhEEEEECC-CCCEEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHh---cCCCcccEEEEEE
Confidence            36778999999999999998 9999999999999889999999999999999999999999887   6677788999999


Q ss_pred             cCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         104 TNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      ++|+|++|+||+ +|+|++|+|+|+|.|..
T Consensus        79 s~~~~~~v~~D~-~G~~l~~~i~w~D~R~~  107 (497)
T 2zf5_O           79 TNQRETTLVWDK-DGKPLYNAIVWQCRRTA  107 (497)
T ss_dssp             EECSSCEEEECT-TCCBSSCEECTTCCTTH
T ss_pred             ecCCCcEEEECC-CCCCcccceeecccCcH
Confidence            999999999999 79999999999998864

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=99.75  E-value=2.2e-18  Score=182.07  Aligned_cols=106  Identities=33%  Similarity=0.503  Sum_probs=96.9

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhC--CCCCCCeeEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAH--GLSRDDIVTL  101 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~--~~~~~~i~~I  101 (500)
                      .+++|||+|||++|++|||. +|+++++.+.+++..+|++||.||||++||+++++++++++++   .  +++.++|.+|
T Consensus         4 ~~~lgIDiGtT~~k~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~~~i~~I   79 (503)
T 2w40_A            4 NVILSIDQSTQSTKVFFYDE-ELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKV---LKDKYTSVIIKCI   79 (503)
T ss_dssp             EEEEEEEECSSEEEEEEEET-TCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHH---HHHHSSSCEEEEE
T ss_pred             cEEEEEEeCCcceEEEEECC-CCCEEEEEEEeeeeecCCCCcEEECHHHHHHHHHHHHHHHHHH---hhcCCCccceEEE
Confidence            36778999999999999998 9999999999999888999999999999999999999999876   4  4556789999


Q ss_pred             EEcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         102 GITNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       102 gis~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      ||++|+|++++||+++|+|++|+|.|.|.|..
T Consensus        80 gis~~~~~~~~~D~~~G~~l~~~i~w~D~r~~  111 (503)
T 2w40_A           80 GITNQRETVIIWDRITGKPLYNAIVWLDTRVE  111 (503)
T ss_dssp             EEEECSSCEEEEETTTCCBSSCEECTTCCTTH
T ss_pred             EEcCCcceEEEEECCCCcCCccceeecccCcH
Confidence            99999999999999459999999999998863

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}

Probab=99.75  E-value=1e-18  Score=182.84  Aligned_cols=96  Identities=11%  Similarity=0.077  Sum_probs=87.7

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++|||+|||++|+++||. +|+++++.+.+++. ++.+||+||||++||+++++++++++ +        .+|.+|||+
T Consensus         7 ~~lgIDiGTts~Ka~l~d~-~G~i~~~~~~~~~~-~~~~g~~eqdp~~~~~~~~~~i~~~~-~--------~~I~aIgis   75 (482)
T 3h6e_A            7 ATIVIDLGKTLSKVSLWDL-DGRMLDRQVRPSIP-LEIDGIRRLDAPDTGRWLLDVLSRYA-D--------HPVTTIVPV   75 (482)
T ss_dssp             -CEEEEECSSEEEEEEECT-TSCEEEEEEEECCC-EESSSCEECCHHHHHHHHHHHHHHTT-T--------SCCCEEEEE
T ss_pred             eEEEEEcCCCCeEEEEEEC-CCcEEEEEEecCCc-ccCCCceeECHHHHHHHHHHHHHHHH-h--------cCCCEEEEe
Confidence            5677999999999999997 99999999999985 58899999999999999999998874 2        579999999


Q ss_pred             CCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         105 NQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      +|++++|+|| + |+|++|+|+|+|+|..
T Consensus        76 ~~~~~~v~~D-~-G~pl~~ai~w~D~R~~  102 (482)
T 3h6e_A           76 GHGAGIAALT-D-GRLAFPPLDYEQSIPE  102 (482)
T ss_dssp             ECSSCEEEEE-T-TEECSCCBCTTSCCCH
T ss_pred             cCcCCEEEEC-C-CCEeccccccCCcccH
Confidence            9999999999 6 9999999999998875

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=99.75  E-value=3.8e-18  Score=180.24  Aligned_cols=104  Identities=36%  Similarity=0.615  Sum_probs=97.6

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++|||+|||++|++|||. +|+++++.+.+++..+|++||.||||++||+++++++++++++   .+++..+|.+|||+
T Consensus         3 ~~lgiDiGtts~k~~l~d~-~G~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~i~~Igis   78 (504)
T 2d4w_A            3 YVLAIDQGTTSSRAIVFDH-SGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTR---GNLTHEDIAAVGIT   78 (504)
T ss_dssp             EEEEEEECSSEEEEEEECT-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---TTCCGGGEEEEEEE
T ss_pred             EEEEEecCCcceEEEEECC-CCCEEEEEEEecceecCCCCceeECHHHHHHHHHHHHHHHHHH---cCCCcccEEEEEEe
Confidence            5778999999999999998 9999999999999889999999999999999999999999887   77777889999999


Q ss_pred             CCcceeEEeeCCCCCccccccccCCccc
Q psy9709         105 NQRETTVVWDLNTGEPLYNAIDKMPSLV  132 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~  132 (500)
                      +|+|++++||+++|+|++|+|.|.|.|.
T Consensus        79 ~~g~~~v~vD~~~G~~l~~~i~w~D~R~  106 (504)
T 2d4w_A           79 NQRETAVVWDKTTGKPVYNAIVWQDTRT  106 (504)
T ss_dssp             ECSSCBEEEETTTCCBSSCEECTTCCTT
T ss_pred             CCCCeEEEEECCCCCCccccceecccCh
Confidence            9999999999945999999999999886

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=99.75  E-value=3.1e-18  Score=180.67  Aligned_cols=104  Identities=32%  Similarity=0.570  Sum_probs=97.1

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++|||+|||++|++|||. +|+++++.+.+++..+|.+||.||||++||+++++++++++++   .+++..+|.+|||+
T Consensus         3 ~~lgiDiGtT~~k~~l~d~-~g~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~i~~Igis   78 (495)
T 2dpn_A            3 FLLALDQGTTSSRAILFTL-EGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRR---AGAEAGEVLALGIT   78 (495)
T ss_dssp             CEEEEEECSSEEEEEEECT-TSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHH---TTCCGGGCCEEEEE
T ss_pred             EEEEEeeCCcceEEEEECC-CCCEEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHh---cCCCcccEEEEEEe
Confidence            5677999999999999998 9999999999999889999999999999999999999999887   77777889999999


Q ss_pred             CCcceeEEeeCCCCCccccccccCCccc
Q psy9709         105 NQRETTVVWDLNTGEPLYNAIDKMPSLV  132 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~  132 (500)
                      +|+|++++||+++|+|++|+|.|.|.|.
T Consensus        79 ~~~~~~~~vD~~~G~~l~~~i~w~D~R~  106 (495)
T 2dpn_A           79 NQRETTLLWDRKTGKPLHNAIVWQDRRT  106 (495)
T ss_dssp             ECSSCBEEEETTTCCBSSCEECTTCCTT
T ss_pred             CCCccEEEEECCCCcCCccceeecccCh
Confidence            9999999999945999999999999875

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=99.73  E-value=9.8e-18  Score=176.35  Aligned_cols=101  Identities=27%  Similarity=0.317  Sum_probs=93.8

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++|||+|||++|+++||. +|+++++.+.+++..+|++||+||||++||+++++++++++++   .  ..++|.+|||++
T Consensus         2 ~lgiDiGtt~~k~~l~d~-~g~~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~---~--~~~~i~~Igis~   75 (484)
T 2itm_A            2 YIGIDLGTSGVKVILLNE-QGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQ---H--SLQDVKALGIAG   75 (484)
T ss_dssp             EEEEEECSSEEEEEEECT-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---S--CCTTCCEEEEEE
T ss_pred             EEEEEecCcccEEEEECC-CCCEEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHh---C--CccceEEEEEcC
Confidence            467999999999999998 9999999999999999999999999999999999999999876   3  256899999999


Q ss_pred             CcceeEEeeCCCCCccccccccCCcccc
Q psy9709         106 QRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       106 ~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      |+|++|+||+ +|+|++|+|.|.|.|..
T Consensus        76 ~~~~~v~~D~-~G~~l~~~i~w~D~R~~  102 (484)
T 2itm_A           76 QMHGATLLDA-QQRVLRPAILWNDGRCA  102 (484)
T ss_dssp             CSSCBEEECT-TCCBCSCEECTTCCTTH
T ss_pred             CcCcEEEECC-CcCCCcccceecccCcH
Confidence            9999999999 69999999999998874

>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*

Probab=99.71  E-value=1e-17  Score=178.18  Aligned_cols=104  Identities=15%  Similarity=0.209  Sum_probs=87.4

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCC----CCcc-------ccCHH-HHHHHHHHHHHHHHHHHHhC
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQ----EGWA-------EQDPM-EILQAVQTTMDRAIEKLSAH   91 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~----~g~~-------e~d~~-~~~~~~~~~i~~~~~~~~~~   91 (500)
                      .+++|||+|||++|++|||. +|+++++.+.+|+..+|.    +||+       ||||+ .||+++..+++ .+++   .
T Consensus        10 ~~~lgID~GTts~Ka~l~d~-~G~vv~~~~~~~~~~~p~~~~~~g~~e~~~g~~eqdp~~~w~~~~~~~~~-~l~~---~   84 (538)
T 4bc3_A           10 RCCLGWDFSTQQVKVVAVDA-ELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILE-KMKA---S   84 (538)
T ss_dssp             CEEEEEEECSSEEEEEEEET-TCCEEEEEEEEHHHHSGGGCCBTTBEECTTSSCEEEEHHHHHHHHHHHHH-HHHH---T
T ss_pred             CEEEEEEEcCcCEEEEEECC-CCCEEEEEEEecCCcCCcccCCCCeeecCCCccccCcHHHHHHHHHHHHH-HHHH---c
Confidence            47888999999999999998 999999999999876664    6664       67887 46666655554 4455   7


Q ss_pred             CCCCCCeeEEEEcCCcceeEEeeCCCCC--------------------ccccccccCCcccc
Q psy9709          92 GLSRDDIVTLGITNQRETTVVWDLNTGE--------------------PLYNAIDKMPSLVY  133 (500)
Q Consensus        92 ~~~~~~i~~Igis~~~~~~v~~d~~~g~--------------------pl~p~i~w~d~~~~  133 (500)
                      ++++++|++||||+|+|++|+||+ +|+                    |++|+|+|+|.|..
T Consensus        85 ~~~~~~I~aIgis~q~~~~v~~D~-~g~~~l~~l~~~~~l~~~~~~~~pl~~ai~W~D~R~~  145 (538)
T 4bc3_A           85 GFDFSQVLALSGAGQQHGSIYWKA-GAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTT  145 (538)
T ss_dssp             TCCGGGEEEEEEEECSSCEEEEET-THHHHHHTCCTTSCHHHHHTTCBSCSEEECTTCCCCH
T ss_pred             CCChHHeEEEEecccceeEEEECC-CccccccccccccchhhhccccccccCCcccccCcHH
Confidence            778899999999999999999999 565                    99999999998874

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=99.70  E-value=3.3e-17  Score=173.15  Aligned_cols=95  Identities=21%  Similarity=0.213  Sum_probs=84.3

Q ss_pred             CcEEEEEecCCCcceEEEEe-CCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          23 VPLIGVIDEGTRTVRFAIIS-ALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        23 ~~~i~giDiGtt~~k~~v~d-~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      +.+++|||+|||++|++||| . +|+++++.+.++      +||+||||++||++++++++++       +. .++|.+|
T Consensus         4 ~~~~lgIDiGtts~ka~l~d~~-~G~i~~~~~~~~------~g~~e~d~~~~~~~i~~~l~~~-------~~-~~~I~~I   68 (515)
T 3i8b_A            4 RTLVAGVDTSTQSCKVRVTDAE-TGELVRFGQAKH------PNGTSVDPSYWWSAFQEAAEQA-------GG-LDDVSAL   68 (515)
T ss_dssp             SCEEEEEEECSSEEEEEEEETT-TCCEEEEEEEEC------CSSSEECTHHHHHHHHHHHHHT-------TC-STTEEEE
T ss_pred             CcEEEEEEeccccEEEEEEECC-CCeEEEEEEEeC------CCCceECHHHHHHHHHHHHHhc-------CC-ccCceEE
Confidence            35778899999999999999 8 899999988776      4899999999999988877643       33 5789999


Q ss_pred             EEcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         102 GITNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       102 gis~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      ||++|++++|+||+ +|+|++|+|+|+|.|..
T Consensus        69 gis~q~~~~v~~D~-~G~pl~~~i~W~D~R~~   99 (515)
T 3i8b_A           69 AVGGQQHGMVILDN-QGNVIRDAMLWNDTSSA   99 (515)
T ss_dssp             EEEECSSCBEEECT-TSCBCSCEECTTCCTTH
T ss_pred             EEeCCcceEEEECC-CCCCcCCcceecCCCHH
Confidence            99999999999999 79999999999998864

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*

Probab=99.68  E-value=3.6e-17  Score=172.36  Aligned_cols=103  Identities=16%  Similarity=0.133  Sum_probs=89.1

Q ss_pred             cCcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeee----eecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy9709          22 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS----TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD   97 (500)
Q Consensus        22 ~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~----~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~   97 (500)
                      ++.+++|||+|||++|++|||. +|+++...+.++.    ...+.+||.|+||++||+++.++++++...       ..+
T Consensus         2 ~~~~~lgiDiGtts~k~~l~d~-~g~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~~~~~~~~-------~~~   73 (489)
T 2uyt_A            2 TFRNCVAVDLGASSGRVMLARY-ERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAA-------GIA   73 (489)
T ss_dssp             CCEEEEEEEECSSEEEEEEEEE-EGGGTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHT-------TCC
T ss_pred             CcceEEEEEecCCCceEEEEEe-cCccceEEEEEEeecCCCccccCCeEEECHHHHHHHHHHHHHHHHhC-------CCC
Confidence            3456788999999999999998 8999987766654    245788999999999999999999987642       357


Q ss_pred             eeEEEEcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709          98 IVTLGITNQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus        98 i~~Igis~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      |.+|||++|+|++++||+ +|+|++|+|+|.|.|..
T Consensus        74 i~~Igis~q~~~~v~~D~-~G~~l~~~i~w~D~R~~  108 (489)
T 2uyt_A           74 IDSIGIDTWGVDFVLLDQ-QGQRVGLPVAYRDSRTN  108 (489)
T ss_dssp             CCEEEEEECSSCEEEECT-TSCEESCCBCTTCGGGT
T ss_pred             ceEEEEecCcccEEEECC-CCCCccCCccccCCccH
Confidence            999999999999999999 59999999999998874

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=98.53  E-value=3.1e-07  Score=90.96  Aligned_cols=91  Identities=19%  Similarity=0.291  Sum_probs=72.4

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|+|++|++++|. +|+++.+.+.+++.        +.+++++++.+.+.+++++++   .+++..+|.+|||
T Consensus         6 ~~~lgiDiggt~~~~~l~d~-~g~il~~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~~igi   73 (326)
T 2qm1_A            6 KKIIGIDLGGTTIKFAILTT-DGVVQQKWSIETNI--------LEDGKHIVPSIIESIRHRIDL---YNMKKEDFVGIGM   73 (326)
T ss_dssp             CEEEEEEECSSEEEEEEEET-TCCEEEEEEEECCC--------TTTTTTHHHHHHHHHHHHHHH---TTCCGGGEEEEEE
T ss_pred             cEEEEEEECCCEEEEEEECC-CCCEEEEEEEcCCC--------CCCHHHHHHHHHHHHHHHHHH---cCCCccceeEEEE
Confidence            46777999999999999998 89999887776642        357888999999999999887   6666678999999


Q ss_pred             cCCcceeEEeeCCCCCcc-ccccccCCc
Q psy9709         104 TNQRETTVVWDLNTGEPL-YNAIDKMPS  130 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl-~p~i~w~d~  130 (500)
                      +..+    ++|.++|..+ .|.+.|.+.
T Consensus        74 ~~pG----~vd~~~g~v~~~~~l~w~~~   97 (326)
T 2qm1_A           74 GTPG----SVDIEKGTVVGAYNLNWTTV   97 (326)
T ss_dssp             EESS----EEETTTTEEECBGGGTBCSC
T ss_pred             eccc----ceeCCCCEEEecCCCCccCC
Confidence            9877    6787556654 444567644

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=98.42  E-value=4.9e-07  Score=89.51  Aligned_cols=94  Identities=19%  Similarity=0.314  Sum_probs=72.8

Q ss_pred             ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709         150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT  229 (500)
Q Consensus       150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~  229 (500)
                      .|+.+++|||+|+|++|++++|.. |+++...+.+++.        .++++++++.+.+++++++++   .+++..+|.+
T Consensus         3 ~m~~~~lgiDiggt~~~~~l~d~~-g~il~~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~~   70 (326)
T 2qm1_A            3 AMDKKIIGIDLGGTTIKFAILTTD-GVVQQKWSIETNI--------LEDGKHIVPSIIESIRHRIDL---YNMKKEDFVG   70 (326)
T ss_dssp             GGGCEEEEEEECSSEEEEEEEETT-CCEEEEEEEECCC--------TTTTTTHHHHHHHHHHHHHHH---TTCCGGGEEE
T ss_pred             CcccEEEEEEECCCEEEEEEECCC-CCEEEEEEEcCCC--------CCCHHHHHHHHHHHHHHHHHH---cCCCccceeE
Confidence            455799999999999999999985 9999877766542        146778999999999988875   3455567999


Q ss_pred             EEEcCCCceeEEEeCCCCccc-ccceeeccC
Q psy9709         230 LGITNQRETTVVWDLNTGEPL-YNAIVWSDT  259 (500)
Q Consensus       230 I~vs~~~~~~v~~d~~~G~~l-~~~i~w~D~  259 (500)
                      |+++.++    ++|.++|..+ .|.+.|.+.
T Consensus        71 igi~~pG----~vd~~~g~v~~~~~l~w~~~   97 (326)
T 2qm1_A           71 IGMGTPG----SVDIEKGTVVGAYNLNWTTV   97 (326)
T ss_dssp             EEEEESS----EEETTTTEEECBGGGTBCSC
T ss_pred             EEEeccc----ceeCCCCEEEecCCCCccCC
Confidence            9999887    8887556655 345568665

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5

Probab=98.34  E-value=1.8e-06  Score=84.71  Aligned_cols=73  Identities=18%  Similarity=0.209  Sum_probs=57.0

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCe--eEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI--VTL  101 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i--~~I  101 (500)
                      .+++|||+|+|++|++++|. +|+++.+.+.+..      . ..++++++++.+.+.+++++++   .+.+.++|  .+|
T Consensus        11 ~~~lGiDiGgT~i~~~l~d~-~G~il~~~~~~~~------~-~~~~~~~~~~~l~~~i~~~l~~---~~~~~~~i~~~~i   79 (305)
T 1zc6_A           11 RYLIGVDGGGTGTRIRLHAS-DGTPLAMAEGGAS------A-LSQGIAKSWQAVLSTLEAAFQQ---AGLPAAPASACAI   79 (305)
T ss_dssp             CEEEEEEECSSCEEEEEEET-TCCEEEEEEESCC------C-GGGCHHHHHHHHHHHHHHHHHH---TTCCCCCGGGEEE
T ss_pred             CEEEEEEcCccceEEEEEcC-CCCEEEEEeCCCC------C-cccCHHHHHHHHHHHHHHHHHh---cCCChhhhccceE
Confidence            46788999999999999998 8999987654321      1 2368999999999999999887   67767777  566


Q ss_pred             EEcCCc
Q psy9709         102 GITNQR  107 (500)
Q Consensus       102 gis~~~  107 (500)
                      ||+..+
T Consensus        80 gig~pG   85 (305)
T 1zc6_A           80 GLGLSG   85 (305)
T ss_dssp             EEEESC
T ss_pred             EEEecC
Confidence            666444

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=98.30  E-value=1e-06  Score=89.31  Aligned_cols=90  Identities=13%  Similarity=0.138  Sum_probs=70.9

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|+|++|++++|. +|+++.+.+.+++        .+++++++++.+.+.+++++++   .+.+..+|.+|||
T Consensus        87 ~~~lGIDiGgt~i~~~l~d~-~G~vl~~~~~~~~--------~~~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gigi  154 (380)
T 2hoe_A           87 AYVLGIEVTRDEIAACLIDA-SMNILAHEAHPLP--------SQSDREETLNVMYRIIDRAKDM---MEKLGSKLSALTV  154 (380)
T ss_dssp             CEEEEEEECSSEEEEEEEET-TCCEEEEEEEECC--------SSCCHHHHHHHHHHHHHHHHHH---HHHTTCCCCEEEE
T ss_pred             CeEEEEEECCCEEEEEEECC-CCCEEEEEEEccC--------CCCCHHHHHHHHHHHHHHHHHh---cCCCcCcEEEEEE
Confidence            46788999999999999998 8999988776654        2357999999999999999876   4444578999999


Q ss_pred             cCCcceeEEeeCCCCCcc-ccccccCC
Q psy9709         104 TNQRETTVVWDLNTGEPL-YNAIDKMP  129 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl-~p~i~w~d  129 (500)
                      +..+    ++|.++|..+ .|.+.|.+
T Consensus       155 ~~pG----~vd~~~g~v~~~~~l~w~~  177 (380)
T 2hoe_A          155 AAPG----PIDTERGIIIDPRNFPLSQ  177 (380)
T ss_dssp             EESS----CEETTTTEECCCSSCTTBT
T ss_pred             Eeec----cEECCCCEEeccCCCCCcC
Confidence            9777    6787457665 35556764

>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=98.30  E-value=1.9e-06  Score=88.75  Aligned_cols=89  Identities=15%  Similarity=0.152  Sum_probs=72.4

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|+|++|++++|. +|+++.+.+.+++         .++++++++.+.+.+++++++   .+.+..+|.+|||
T Consensus       108 ~~~lGIDiGgt~i~~~l~d~-~G~il~~~~~~~~---------~~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gigi  174 (429)
T 1z05_A          108 WQFLSMRLGRGYLTIALHEL-GGEVLIDTKIDIH---------EIDQDDVLARLLFEIEEFFQT---YAAQLDRVTSIAI  174 (429)
T ss_dssp             EEEEEEEEETTEEEEEEEET-TSCEEEEEEEECC---------CCBHHHHHHHHHHHHHHHHHH---TTTTCCEEEEEEE
T ss_pred             CEEEEEEECCCEEEEEEECC-CCCEEEEEEEcCC---------CCCHHHHHHHHHHHHHHHHHh---cCCCcCceEEEEE
Confidence            46788999999999999998 8999988776653         236899999999999999887   6777778999999


Q ss_pred             cCCcceeEEeeCCCCCcc-ccccccCC
Q psy9709         104 TNQRETTVVWDLNTGEPL-YNAIDKMP  129 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl-~p~i~w~d  129 (500)
                      +..+    ++|.++|..+ .|.+.|.+
T Consensus       175 ~~pG----~vd~~~g~v~~~~~l~w~~  197 (429)
T 1z05_A          175 TLPG----LVNSEQGIVLQMPHYNVKN  197 (429)
T ss_dssp             EESS----EEETTTTEEEECSSSBCSS
T ss_pred             eccC----cEeCCCCeEeecCCCCCCC
Confidence            9888    7787557665 45566764

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=98.26  E-value=1.7e-06  Score=88.49  Aligned_cols=89  Identities=15%  Similarity=0.159  Sum_probs=70.7

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|+|++|++++|. +|+++.+.+.+++         +++++++++.+.+++++++++   .+.+..+|.+|||
T Consensus        85 ~~~lgiDiG~t~i~~~l~d~-~G~il~~~~~~~~---------~~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gigi  151 (406)
T 1z6r_A           85 WHYLSLRISRGEIFLALRDL-SSKLVVEESQELA---------LKDDLPLLDRIISHIDQFFIR---HQKKLERLTSIAI  151 (406)
T ss_dssp             CEEEEEEEETTEEEEEEEET-TCCEEEEEEEECC---------SSCSSCHHHHHHHHHHHHHHH---TGGGCCCEEEEEE
T ss_pred             cEEEEEEEcCCEEEEEEEcC-CCCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHHh---cCCCcCceeEEEE
Confidence            46788999999999999998 8999988766552         357888999999999999887   6666678999999


Q ss_pred             cCCcceeEEeeCCCCCccc-ccc-ccCC
Q psy9709         104 TNQRETTVVWDLNTGEPLY-NAI-DKMP  129 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~-p~i-~w~d  129 (500)
                      +..+    ++|.++|..+. |.+ -|.+
T Consensus       152 ~~pG----~vd~~~g~v~~~~~l~~w~~  175 (406)
T 1z6r_A          152 TLPG----IIDTENGIVHRMPFYEDVKE  175 (406)
T ss_dssp             EESS----EEETTTTEEEECTTCTTCSS
T ss_pred             Eeec----CEeCCCCEEecCCCCCCccC
Confidence            9888    67875566653 333 4764

>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*

Probab=98.25  E-value=2.4e-06  Score=85.32  Aligned_cols=74  Identities=12%  Similarity=0.160  Sum_probs=59.9

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCC-CeeEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD-DIVTLG  102 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~-~i~~Ig  102 (500)
                      .+++|||+|+|++|++++|. +|+++.+.+.+.      ..+.+++++++++.+.+++++++++   .+...+ +|.+||
T Consensus         6 ~~~lgiDiGgt~~~~~l~d~-~g~i~~~~~~~~------~~~~~~~~~~~~~~i~~~i~~~~~~---~~~~~~~~i~gig   75 (347)
T 2ch5_A            6 AIYGGVEGGGTRSEVLLVSE-DGKILAEADGLS------TNHWLIGTDKCVERINEMVNRAKRK---AGVDPLVPLRSLG   75 (347)
T ss_dssp             CEEEEEEECTTCEEEEEEET-TSCEEEEEEECC------CCHHHHCHHHHHHHHHHHHHHHHHH---HTCCTTCCBSEEE
T ss_pred             eEEEEEEcCccceEEEEEeC-CCCEEEEEeCCC------CCcccCCHHHHHHHHHHHHHHHHHh---cCCCcccceeEEE
Confidence            36778999999999999998 899998765422      1234568999999999999999877   555556 799999


Q ss_pred             EcCCc
Q psy9709         103 ITNQR  107 (500)
Q Consensus       103 is~~~  107 (500)
                      |+..+
T Consensus        76 i~~pG   80 (347)
T 2ch5_A           76 LSLSG   80 (347)
T ss_dssp             EEETT
T ss_pred             EeccC
Confidence            98777

>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=98.21  E-value=5.1e-06  Score=85.49  Aligned_cols=97  Identities=13%  Similarity=0.087  Sum_probs=75.3

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      ...+++|||+|+|++|++++|.+ |+++...+.+++         .++++++++.+.+++++++++   .+.+..+|.+|
T Consensus       106 ~~~~~lGIDiGgt~i~~~l~d~~-G~il~~~~~~~~---------~~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gi  172 (429)
T 1z05_A          106 LGWQFLSMRLGRGYLTIALHELG-GEVLIDTKIDIH---------EIDQDDVLARLLFEIEEFFQT---YAAQLDRVTSI  172 (429)
T ss_dssp             TTEEEEEEEEETTEEEEEEEETT-SCEEEEEEEECC---------CCBHHHHHHHHHHHHHHHHHH---TTTTCCEEEEE
T ss_pred             CCCEEEEEEECCCEEEEEEECCC-CCEEEEEEEcCC---------CCCHHHHHHHHHHHHHHHHHh---cCCCcCceEEE
Confidence            34579999999999999999985 999987766554         136889999999999998875   45556789999


Q ss_pred             EEcCCCceeEEEeCCCCccc-ccceeeccCCCHHH
Q psy9709         231 GITNQRETTVVWDLNTGEPL-YNAIVWSDTRADNI  264 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l-~~~i~w~D~r~~~~  264 (500)
                      ||+.++    ++|.++|..+ .|.+.|.+..-.+.
T Consensus       173 gi~~pG----~vd~~~g~v~~~~~l~w~~~~l~~~  203 (429)
T 1z05_A          173 AITLPG----LVNSEQGIVLQMPHYNVKNLALGPE  203 (429)
T ss_dssp             EEEESS----EEETTTTEEEECSSSBCSSBCHHHH
T ss_pred             EEeccC----cEeCCCCeEeecCCCCCCCCCHHHH
Confidence            999888    8887557665 35667877654443

>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}

Probab=98.21  E-value=4.8e-06  Score=82.50  Aligned_cols=83  Identities=12%  Similarity=0.131  Sum_probs=66.5

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++|||+|+|++|++++|. +|+++.+.+.+++         +.+++++++.+.+.++++.++   .    ..+.+|||+
T Consensus        25 ~~lgiDiGgt~i~~~l~d~-~G~il~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~----~~~~gigi~   87 (327)
T 4db3_A           25 MYYGFDVGGTKIEFGAFNE-KLERVATERVPTP---------TDDYPLLLETIAGLVAKYDQE---F----ACEGKIGLG   87 (327)
T ss_dssp             CEEEEEECSSEEEEEEECT-TCCEEEEEEEECC---------TTCHHHHHHHHHHHHHHHHHH---H----TSCCEEEEE
T ss_pred             EEEEEEECCCEEEEEEEeC-CCcEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHHh---c----CCccEEEEE
Confidence            3567999999999999998 9999988776654         237899999999999998765   2    247788888


Q ss_pred             CCcceeEEeeCCCCCccccccccC
Q psy9709         105 NQRETTVVWDLNTGEPLYNAIDKM  128 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p~i~w~  128 (500)
                      ..+    ++|.++|....|.+.|.
T Consensus        88 ~pG----~vd~~~g~v~~~~~~~~  107 (327)
T 4db3_A           88 LPG----MEDADDATVLTVNVPAA  107 (327)
T ss_dssp             ESE----EECTTTCCEEESSSGGG
T ss_pred             eec----cEeCCCCEEEcCCCccc
Confidence            766    77865688888877774

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=98.14  E-value=4.6e-06  Score=85.23  Aligned_cols=97  Identities=12%  Similarity=0.118  Sum_probs=73.1

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      ...+++|||+|+|++|++++|.+ |+++...+.+++         .++++++++.+.+++++++++   .+.+..+|.+|
T Consensus        83 ~~~~~lgiDiG~t~i~~~l~d~~-G~il~~~~~~~~---------~~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gi  149 (406)
T 1z6r_A           83 EAWHYLSLRISRGEIFLALRDLS-SKLVVEESQELA---------LKDDLPLLDRIISHIDQFFIR---HQKKLERLTSI  149 (406)
T ss_dssp             TTCEEEEEEEETTEEEEEEEETT-CCEEEEEEEECC---------SSCSSCHHHHHHHHHHHHHHH---TGGGCCCEEEE
T ss_pred             CccEEEEEEEcCCEEEEEEEcCC-CCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHHh---cCCCcCceeEE
Confidence            34579999999999999999985 999987766552         246778999999999988875   34456789999


Q ss_pred             EEcCCCceeEEEeCCCCcccc-cce-eeccCCCHHH
Q psy9709         231 GITNQRETTVVWDLNTGEPLY-NAI-VWSDTRADNI  264 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l~-~~i-~w~D~r~~~~  264 (500)
                      ||+.++    ++|.++|..+. |.+ .|.+..-.+.
T Consensus       150 gi~~pG----~vd~~~g~v~~~~~l~~w~~~~l~~~  181 (406)
T 1z6r_A          150 AITLPG----IIDTENGIVHRMPFYEDVKEMPLGEA  181 (406)
T ss_dssp             EEEESS----EEETTTTEEEECTTCTTCSSBCHHHH
T ss_pred             EEEeec----CEeCCCCEEecCCCCCCccCCCHHHH
Confidence            999888    78874566653 444 5876554333

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=98.14  E-value=3.1e-06  Score=83.59  Aligned_cols=90  Identities=17%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      +|++|||+|+|++|++++|.+ |+++...+.+++          ++++++++.+.+.++++.++        .+|.+|++
T Consensus         2 ~~~lgiDiGgt~i~~~l~d~~-G~i~~~~~~~~~----------~~~~~~~~~i~~~i~~~~~~--------~~i~gigi   62 (321)
T 3vgl_A            2 GLTIGVDIGGTKIAAGVVDEE-GRILSTFKVATP----------PTAEGIVDAICAAVAGASEG--------HDVEAVGI   62 (321)
T ss_dssp             CEEEEEEECSSEEEEEEECTT-CCBCCCEEEECC----------SSHHHHHHHHHHHHHHHHTT--------CCEEEEEE
T ss_pred             cEEEEEEECCCEEEEEEECCC-CCEEEEEEeeCC----------CCHHHHHHHHHHHHHHHHhh--------cCceEEEE
Confidence            489999999999999999985 999876655542          46889999998888887632        47999999


Q ss_pred             cCCCceeEEEeCCCCcccc-cceeeccCCCHHHH
Q psy9709         233 TNQRETTVVWDLNTGEPLY-NAIVWSDTRADNIV  265 (500)
Q Consensus       233 s~~~~~~v~~d~~~G~~l~-~~i~w~D~r~~~~~  265 (500)
                      +.++    ++|.++|.... |.+.|.+.+-.+.+
T Consensus        63 ~~pG----~vd~~~g~v~~~~~l~w~~~~l~~~l   92 (321)
T 3vgl_A           63 GAAG----YVDDKRATVLFAPNIDWRHEPLKDKV   92 (321)
T ss_dssp             EESS----EECTTSSCEEECSSSCCEEECHHHHH
T ss_pred             eccc----cEeCCCCEEEeCCCCCCcCCCHHHHH
Confidence            9887    88875465543 55678776654443

>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A

Probab=98.14  E-value=4.5e-06  Score=83.22  Aligned_cols=88  Identities=17%  Similarity=0.069  Sum_probs=67.2

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|+|++|++++|. +|+++.+.+.+++          ++++++++.+.+.+++++++   .+....+|.+|||
T Consensus        30 ~~~lgiDiGgt~i~~~l~d~-~G~il~~~~~~~~----------~~~~~~~~~i~~~i~~~~~~---~~~~~~~i~gigi   95 (343)
T 2yhw_A           30 LSALAVDLGGTNLRVAIVSM-KGEIVKKYTQFNP----------KTYEERINLILQMCVEAAAE---AVKLNCRILGVGI   95 (343)
T ss_dssp             EEEEEEEECSSEEEEEEEET-TSCEEEEEEEECC----------SSHHHHHHHHHHHHHHHHHH---HHHTTEEEEEEEE
T ss_pred             cEEEEEEECCCEEEEEEECC-CCcEEEEEEEcCC----------CCHHHHHHHHHHHHHHHHHh---cccccCceEEEEE
Confidence            46788999999999999998 8999987765442          36888999999999998766   2223467999999


Q ss_pred             cCCcceeEEeeCCCCCccc-ccc--ccCC
Q psy9709         104 TNQRETTVVWDLNTGEPLY-NAI--DKMP  129 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~-p~i--~w~d  129 (500)
                      +..+    ++|.++|..+. |.+  -|.+
T Consensus        96 ~~pG----~vd~~~g~v~~~~~~~~~w~~  120 (343)
T 2yhw_A           96 STGG----RVNPREGIVLHSTKLIQEWNS  120 (343)
T ss_dssp             EESS----EEETTTTEEEECCTTSSSCSS
T ss_pred             eccc----CEeCCCCEEEeCCcCCCCCcC
Confidence            9888    77875576653 323  4753

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=98.14  E-value=3.3e-06  Score=85.54  Aligned_cols=97  Identities=14%  Similarity=0.166  Sum_probs=73.6

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      ..+++|||+|+|++|++++|.+ |+++...+.+++.        .++++++++.+.+++++++++..   .+..+|.+||
T Consensus        86 ~~~~lGIDiGgt~i~~~l~d~~-G~vl~~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~~~---~~~~~i~gig  153 (380)
T 2hoe_A           86 CAYVLGIEVTRDEIAACLIDAS-MNILAHEAHPLPS--------QSDREETLNVMYRIIDRAKDMME---KLGSKLSALT  153 (380)
T ss_dssp             GCEEEEEEECSSEEEEEEEETT-CCEEEEEEEECCS--------SCCHHHHHHHHHHHHHHHHHHHH---HTTCCCCEEE
T ss_pred             CCeEEEEEECCCEEEEEEECCC-CCEEEEEEEccCC--------CCCHHHHHHHHHHHHHHHHHhcC---CCcCcEEEEE
Confidence            3578999999999999999985 9999877666541        24789999999999999887642   3346789999


Q ss_pred             EcCCCceeEEEeCCCCcccc-cceeeccCCCHHH
Q psy9709         232 ITNQRETTVVWDLNTGEPLY-NAIVWSDTRADNI  264 (500)
Q Consensus       232 vs~~~~~~v~~d~~~G~~l~-~~i~w~D~r~~~~  264 (500)
                      |+.++    ++|.++|..+. |.+.|.+..-.+.
T Consensus       154 i~~pG----~vd~~~g~v~~~~~l~w~~~~l~~~  183 (380)
T 2hoe_A          154 VAAPG----PIDTERGIIIDPRNFPLSQIPLANL  183 (380)
T ss_dssp             EEESS----CEETTTTEECCCSSCTTBTSCHHHH
T ss_pred             EEeec----cEECCCCEEeccCCCCCcCCChHHH
Confidence            99887    78875576653 5567876654433

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=98.14  E-value=4.4e-06  Score=82.53  Aligned_cols=87  Identities=11%  Similarity=0.132  Sum_probs=67.5

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|+|++|++++|. +|+++.+.+.+++        ...+++++++.+.+.++++++.       ..+|.+|||
T Consensus        19 ~~~lgidiggt~i~~~l~d~-~g~il~~~~~~~~--------~~~~~~~~~~~i~~~i~~~~~~-------~~~i~gigi   82 (321)
T 3r8e_A           19 GMILGIDVGGTSVKFGLVTP-EGEIQNATRFMTA--------DWVNGIGFVESMKLEIGNFLKQ-------YPIVKGVGI   82 (321)
T ss_dssp             CCEEEEECCSSEEEEEEECT-TCCEEEEEEEEHH--------HHHTTTCHHHHHHHHHHHHHHH-------CTTCCEEEE
T ss_pred             cEEEEEEECCCEEEEEEEcC-CCcEEEEEEEeCC--------CCCCHHHHHHHHHHHHHHHHhc-------cCCeeEEEE
Confidence            45677999999999999998 8999998877664        2346788999999999888753       357899999


Q ss_pred             cCCcceeEEeeCCCCCccccccc--cCCc
Q psy9709         104 TNQRETTVVWDLNTGEPLYNAID--KMPS  130 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~p~i~--w~d~  130 (500)
                      +..+    ++|.++|..+.+...  |.+-
T Consensus        83 ~~pG----~vd~~~g~v~~~~~l~~w~~~  107 (321)
T 3r8e_A           83 GWPG----LVSLDRTKVILLPNIPSVVNV  107 (321)
T ss_dssp             EESS----EECTTSCCEEEBTTBCCCCSC
T ss_pred             Eecc----cEECCCCEEEeCCCCccccCC
Confidence            9877    778546877654433  8753

>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}

Probab=98.09  E-value=8.1e-06  Score=80.86  Aligned_cols=89  Identities=12%  Similarity=0.109  Sum_probs=68.5

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      +++|||+|+|++|++++|.+ |+++...+.+++.         .+++++++.+.+.++++..+.       ..+.+|||+
T Consensus        25 ~~lgiDiGgt~i~~~l~d~~-G~il~~~~~~~~~---------~~~~~~~~~i~~~i~~~~~~~-------~~~~gigi~   87 (327)
T 4db3_A           25 MYYGFDVGGTKIEFGAFNEK-LERVATERVPTPT---------DDYPLLLETIAGLVAKYDQEF-------ACEGKIGLG   87 (327)
T ss_dssp             CEEEEEECSSEEEEEEECTT-CCEEEEEEEECCT---------TCHHHHHHHHHHHHHHHHHHH-------TSCCEEEEE
T ss_pred             EEEEEEECCCEEEEEEEeCC-CcEEEEEEecCCC---------CCHHHHHHHHHHHHHHHHHhc-------CCccEEEEE
Confidence            78999999999999999985 9999877766541         268899999988888887652       246788988


Q ss_pred             CCCceeEEEeCCCCcccccceee-ccCCCHH
Q psy9709         234 NQRETTVVWDLNTGEPLYNAIVW-SDTRADN  263 (500)
Q Consensus       234 ~~~~~~v~~d~~~G~~l~~~i~w-~D~r~~~  263 (500)
                      .++    ++|.++|....+.+.| .+.+-.+
T Consensus        88 ~pG----~vd~~~g~v~~~~~~~~~~~~l~~  114 (327)
T 4db3_A           88 LPG----MEDADDATVLTVNVPAAKGKPLRA  114 (327)
T ss_dssp             ESE----EECTTTCCEEESSSGGGTTSCHHH
T ss_pred             eec----cEeCCCCEEEcCCCccccCCCHHH
Confidence            776    8896568777777777 4444333

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=98.09  E-value=6.2e-06  Score=81.45  Aligned_cols=82  Identities=17%  Similarity=0.195  Sum_probs=64.2

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++|||+|+|++|++++|. +|+++.+.+.++          +.+++++++.+.+.++++.++        .+|.+|||+
T Consensus         3 ~~lgiDiGgt~i~~~l~d~-~G~i~~~~~~~~----------~~~~~~~~~~i~~~i~~~~~~--------~~i~gigi~   63 (321)
T 3vgl_A            3 LTIGVDIGGTKIAAGVVDE-EGRILSTFKVAT----------PPTAEGIVDAICAAVAGASEG--------HDVEAVGIG   63 (321)
T ss_dssp             EEEEEEECSSEEEEEEECT-TCCBCCCEEEEC----------CSSHHHHHHHHHHHHHHHHTT--------CCEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEECC-CCCEEEEEEeeC----------CCCHHHHHHHHHHHHHHHHhh--------cCceEEEEe
Confidence            6778999999999999998 999998777665          247899999999999888632        479999999


Q ss_pred             CCcceeEEeeCCCCCccc-cccccCC
Q psy9709         105 NQRETTVVWDLNTGEPLY-NAIDKMP  129 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~-p~i~w~d  129 (500)
                      ..+    ++|.++|.... |.+.|.+
T Consensus        64 ~pG----~vd~~~g~v~~~~~l~w~~   85 (321)
T 3vgl_A           64 AAG----YVDDKRATVLFAPNIDWRH   85 (321)
T ss_dssp             ESS----EECTTSSCEEECSSSCCEE
T ss_pred             ccc----cEeCCCCEEEeCCCCCCcC
Confidence            777    77874455442 4455653

>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A

Probab=98.03  E-value=9.7e-06  Score=80.81  Aligned_cols=96  Identities=17%  Similarity=0.112  Sum_probs=70.4

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      ..+++|||+|+|++|++++|.+ |+++...+.+++          ++++++++.+.+.+++++++..   ....+|.+|+
T Consensus        29 ~~~~lgiDiGgt~i~~~l~d~~-G~il~~~~~~~~----------~~~~~~~~~i~~~i~~~~~~~~---~~~~~i~gig   94 (343)
T 2yhw_A           29 TLSALAVDLGGTNLRVAIVSMK-GEIVKKYTQFNP----------KTYEERINLILQMCVEAAAEAV---KLNCRILGVG   94 (343)
T ss_dssp             EEEEEEEEECSSEEEEEEEETT-SCEEEEEEEECC----------SSHHHHHHHHHHHHHHHHHHHH---HTTEEEEEEE
T ss_pred             CcEEEEEEECCCEEEEEEECCC-CcEEEEEEEcCC----------CCHHHHHHHHHHHHHHHHHhcc---cccCceEEEE
Confidence            3589999999999999999985 999987655443          3678889999888888876532   2345799999


Q ss_pred             EcCCCceeEEEeCCCCcccc-cce--eeccCCCHHHH
Q psy9709         232 ITNQRETTVVWDLNTGEPLY-NAI--VWSDTRADNIV  265 (500)
Q Consensus       232 vs~~~~~~v~~d~~~G~~l~-~~i--~w~D~r~~~~~  265 (500)
                      ++.++    ++|.++|..+. |.+  .|.+..-.+.+
T Consensus        95 i~~pG----~vd~~~g~v~~~~~~~~~w~~~~l~~~l  127 (343)
T 2yhw_A           95 ISTGG----RVNPREGIVLHSTKLIQEWNSVDLRTPL  127 (343)
T ss_dssp             EEESS----EEETTTTEEEECCTTSSSCSSEECHHHH
T ss_pred             Eeccc----CEeCCCCEEEeCCcCCCCCcCCCHHHHH
Confidence            99888    88875566653 333  47665544433

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=98.00  E-value=7.8e-06  Score=80.73  Aligned_cols=94  Identities=13%  Similarity=0.139  Sum_probs=70.3

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      ...+++|||+|+|++|++++|.. |+++...+.+++.        ..+++++++.+.+.++++++.       ..+|.+|
T Consensus        17 ~~~~~lgidiggt~i~~~l~d~~-g~il~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~-------~~~i~gi   80 (321)
T 3r8e_A           17 FQGMILGIDVGGTSVKFGLVTPE-GEIQNATRFMTAD--------WVNGIGFVESMKLEIGNFLKQ-------YPIVKGV   80 (321)
T ss_dssp             --CCEEEEECCSSEEEEEEECTT-CCEEEEEEEEHHH--------HHTTTCHHHHHHHHHHHHHHH-------CTTCCEE
T ss_pred             cCcEEEEEEECCCEEEEEEEcCC-CcEEEEEEEeCCC--------CCCHHHHHHHHHHHHHHHHhc-------cCCeeEE
Confidence            45679999999999999999985 9999887776652        236677888888888887642       3578999


Q ss_pred             EEcCCCceeEEEeCCCCcccc-ccee-eccCCCHHH
Q psy9709         231 GITNQRETTVVWDLNTGEPLY-NAIV-WSDTRADNI  264 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l~-~~i~-w~D~r~~~~  264 (500)
                      ||+.++    ++|.++|..+. +.+. |.+.+..+.
T Consensus        81 gi~~pG----~vd~~~g~v~~~~~l~~w~~~~l~~~  112 (321)
T 3r8e_A           81 GIGWPG----LVSLDRTKVILLPNIPSVVNVPIVEI  112 (321)
T ss_dssp             EEEESS----EECTTSCCEEEBTTBCCCCSCCHHHH
T ss_pred             EEEecc----cEECCCCEEEeCCCCccccCCCHHHH
Confidence            999887    88964577664 4555 887665443

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=97.92  E-value=1e-05  Score=77.83  Aligned_cols=118  Identities=14%  Similarity=0.085  Sum_probs=71.5

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++|||+|+|++|++++|. +|+++.+.+.+++.          ||.   +++.++++++.+    .++...+|.+|+++
T Consensus         4 ~~lGiD~Gst~~k~~l~d~-~g~i~~~~~~~~~~----------~~~---~~~~~~l~~l~~----~~~~~~~i~~i~~T   65 (270)
T 1hux_A            4 YTLGIDVGSTASKCIILKD-GKEIVAKSLVAVGT----------GTS---GPARSISEVLEN----AHMKKEDMAFTLAT   65 (270)
T ss_dssp             EEEEEEECSSEEEEEEEET-TTEEEEEEEEECCS----------SCC---HHHHHHHHHHHH----HTCCGGGCSEEEEE
T ss_pred             EEEEEEeccceEEEEEEeC-CCCEEEEEEecCCC----------CHH---HHHHHHHHHHHH----cCCChhHEEEEEEe
Confidence            5677999999999999998 89999988776641          332   345555666543    13455678999999


Q ss_pred             CCcceeEEeeCCCCCccccccccCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCCCeEEEE
Q psy9709         105 NQRETTVVWDLNTGEPLYNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVS  180 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~  180 (500)
                      ++++.++.-             ..+.-+.|.++..  .... .......  ..||+|+..+|++.+.  +|+++..
T Consensus        66 G~g~~~~~~-------------~~~~~v~Ei~ah~--~ga~-~~~~~~~--~vidiGGqd~k~i~~~--~g~v~~~  121 (270)
T 1hux_A           66 GYGRNSLEG-------------IADKQMSELSCHA--MGAS-FIWPNVH--TVIDIGGQDVKVIHVE--NGTMTNF  121 (270)
T ss_dssp             STTTTTTTT-------------TCSEEECHHHHHH--HHHH-HHCTTCC--EEEEEETTEEEEEEEE--TTEEEEE
T ss_pred             Cccccchhh-------------cCCCCcccHHHHH--HHHH-HhCCCCC--EEEEECCCceEEEEEe--CCceeee
Confidence            998654410             0111111111000  0000 0000111  3599999999999995  3887643

>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*

Probab=97.86  E-value=2e-05  Score=76.87  Aligned_cols=55  Identities=9%  Similarity=0.106  Sum_probs=45.6

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHH
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIE   86 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~   86 (500)
                      +++|||+|+|++|++++|. +|+++.+.+.++      +++.+++++++++.+.+.++++++
T Consensus         3 ~~lgiDiGgt~~~~~l~d~-~g~i~~~~~~~~------~~~~~~~~~~~~~~i~~~i~~~~~   57 (299)
T 2e2o_A            3 IIVGVDAGGTKTKAVAYDC-EGNFIGEGSSGP------GNYHNVGLTRAIENIKEAVKIAAK   57 (299)
T ss_dssp             CEEEEEECSSCEEEEEECT-TSCEEEEEEESC------CCHHHHCHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEeCCCcEEEEEEcC-CCCEEEEEeCCC------CCcccCCHHHHHHHHHHHHHHHHh
Confidence            5677999999999999998 899998776554      233467899999999999998864

>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}

Probab=97.84  E-value=1.5e-05  Score=78.22  Aligned_cols=86  Identities=10%  Similarity=0.156  Sum_probs=63.8

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|+|++|++++|. +|+++.+.+.+++         +.+++++++.+.+.+++++++   .+   .+|.+|||
T Consensus         7 ~~~lgiDiGgt~i~~~l~d~-~G~il~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~~---~~i~gigi   70 (310)
T 3htv_A            7 NVVAGVDMGATHIRFCLRTA-EGETLHCEKKRTA---------EVIAPGLVSGIGEMIDEQLRR---FN---ARCHGLVM   70 (310)
T ss_dssp             EEEEEEEECSSEEEEEEEET-TSCEEEEEEEEHH---------HHHTTCHHHHHHHHHHHHHHH---HT---EEEEEEEE
T ss_pred             CEEEEEEeCCCEEEEEEECC-CCCEEEEEEecCc---------cccHHHHHHHHHHHHHHHHHh---cC---CCeeEEEE
Confidence            46788999999999999998 9999988776553         223566888888888887665   22   35899999


Q ss_pred             cCCcceeEEeeCCCCCcc-ccccccCC
Q psy9709         104 TNQRETTVVWDLNTGEPL-YNAIDKMP  129 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl-~p~i~w~d  129 (500)
                      +..+    ++|.++|..+ .|.+.|.+
T Consensus        71 ~~pG----~vd~~~g~v~~~~~l~~~~   93 (310)
T 3htv_A           71 GFPA----LVSKDKRTIISTPNLPLTA   93 (310)
T ss_dssp             EESS----CBCTTSSCBCSCCSSSCCH
T ss_pred             eccc----cEeCCCCEEEeCCCCCCcc
Confidence            9776    6787556665 34566753

>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}

Probab=97.82  E-value=1e-05  Score=79.51  Aligned_cols=87  Identities=9%  Similarity=0.136  Sum_probs=63.6

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      ..+++|||+|+|++|++++|.+ |+++...+.+++.         .+++++++.+.+.+++++++.      ..+|.+||
T Consensus         6 ~~~~lgiDiGgt~i~~~l~d~~-G~il~~~~~~~~~---------~~~~~~~~~i~~~i~~~~~~~------~~~i~gig   69 (310)
T 3htv_A            6 HNVVAGVDMGATHIRFCLRTAE-GETLHCEKKRTAE---------VIAPGLVSGIGEMIDEQLRRF------NARCHGLV   69 (310)
T ss_dssp             EEEEEEEEECSSEEEEEEEETT-SCEEEEEEEEHHH---------HHTTCHHHHHHHHHHHHHHHH------TEEEEEEE
T ss_pred             CCEEEEEEeCCCEEEEEEECCC-CCEEEEEEecCcc---------ccHHHHHHHHHHHHHHHHHhc------CCCeeEEE
Confidence            3589999999999999999985 9999877665541         224567777777777766542      12589999


Q ss_pred             EcCCCceeEEEeCCCCcccc-cceeecc
Q psy9709         232 ITNQRETTVVWDLNTGEPLY-NAIVWSD  258 (500)
Q Consensus       232 vs~~~~~~v~~d~~~G~~l~-~~i~w~D  258 (500)
                      |+.++    ++|.++|..+. |.+.|.+
T Consensus        70 i~~pG----~vd~~~g~v~~~~~l~~~~   93 (310)
T 3htv_A           70 MGFPA----LVSKDKRTIISTPNLPLTA   93 (310)
T ss_dssp             EEESS----CBCTTSSCBCSCCSSSCCH
T ss_pred             Eeccc----cEeCCCCEEEeCCCCCCcc
Confidence            99887    78875566653 5567765

>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*

Probab=97.79  E-value=3.3e-05  Score=76.96  Aligned_cols=102  Identities=11%  Similarity=0.100  Sum_probs=70.9

Q ss_pred             ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCC-Cee
Q psy9709         150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD-DIV  228 (500)
Q Consensus       150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~-~I~  228 (500)
                      +|+.+++|||+|+|++|++++|.+ |+++...+.+..      .+.+++++++++.+.+++++++++.   +.+.. +|.
T Consensus         3 ~M~~~~lgiDiGgt~~~~~l~d~~-g~i~~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~~~~~---~~~~~~~i~   72 (347)
T 2ch5_A            3 FMAAIYGGVEGGGTRSEVLLVSED-GKILAEADGLST------NHWLIGTDKCVERINEMVNRAKRKA---GVDPLVPLR   72 (347)
T ss_dssp             SSSCEEEEEEECTTCEEEEEEETT-SCEEEEEEECCC------CHHHHCHHHHHHHHHHHHHHHHHHH---TCCTTCCBS
T ss_pred             ccceEEEEEEcCccceEEEEEeCC-CCEEEEEeCCCC------CcccCCHHHHHHHHHHHHHHHHHhc---CCCccccee
Confidence            345599999999999999999985 999877654221      1123578999999999999988753   44455 799


Q ss_pred             EEEEcCCCceeEEEeCCCCcc--------c----ccceeeccCCCHHHH
Q psy9709         229 TLGITNQRETTVVWDLNTGEP--------L----YNAIVWSDTRADNIV  265 (500)
Q Consensus       229 ~I~vs~~~~~~v~~d~~~G~~--------l----~~~i~w~D~r~~~~~  265 (500)
                      +||++.+|    ++|.+.+.+        +    .|+...+|.++....
T Consensus        73 gigi~~pG----~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a  117 (347)
T 2ch5_A           73 SLGLSLSG----GDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIAT  117 (347)
T ss_dssp             EEEEEETT----TTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHH
T ss_pred             EEEEeccC----CCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHh
Confidence            99998887    444310111        1    356667777666554

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5

Probab=97.74  E-value=9e-05  Score=72.45  Aligned_cols=77  Identities=18%  Similarity=0.192  Sum_probs=58.0

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCe--eEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI--VTL  230 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I--~~I  230 (500)
                      +|++|||+|+|++|++++|.+ |+++...+.+..     + + .++++++++.+.+++++++++   .+.+..+|  .+|
T Consensus        11 ~~~lGiDiGgT~i~~~l~d~~-G~il~~~~~~~~-----~-~-~~~~~~~~~~l~~~i~~~l~~---~~~~~~~i~~~~i   79 (305)
T 1zc6_A           11 RYLIGVDGGGTGTRIRLHASD-GTPLAMAEGGAS-----A-L-SQGIAKSWQAVLSTLEAAFQQ---AGLPAAPASACAI   79 (305)
T ss_dssp             CEEEEEEECSSCEEEEEEETT-CCEEEEEEESCC-----C-G-GGCHHHHHHHHHHHHHHHHHH---TTCCCCCGGGEEE
T ss_pred             CEEEEEEcCccceEEEEEcCC-CCEEEEEeCCCC-----C-c-ccCHHHHHHHHHHHHHHHHHh---cCCChhhhccceE
Confidence            599999999999999999975 999877654321     0 1 257889999999999998865   35556666  677


Q ss_pred             EEcCCCceeEEEeC
Q psy9709         231 GITNQRETTVVWDL  244 (500)
Q Consensus       231 ~vs~~~~~~v~~d~  244 (500)
                      +++.++    ++|.
T Consensus        80 gig~pG----~v~~   89 (305)
T 1zc6_A           80 GLGLSG----VHNR   89 (305)
T ss_dssp             EEEESC----CCTT
T ss_pred             EEEecC----CCch
Confidence            777665    4565

>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10

Probab=97.71  E-value=0.00011  Score=72.42  Aligned_cols=81  Identities=12%  Similarity=0.114  Sum_probs=59.0

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++|||+|+|++|++++|. +|+++.+.+.+++.         .+++++.+.+.+.++++...   .    ..+.+|||+
T Consensus        25 ~~lgiDiGgt~i~~~l~d~-~g~il~~~~~~~~~---------~~~~~~~~~i~~~i~~~~~~---~----~~i~~igi~   87 (327)
T 2ap1_A           25 MYYGFDIGGTKIALGVFDS-TRRLQWEKRVPTPH---------TSYSAFLDAVCELVEEADQR---F----GVKGSVGIG   87 (327)
T ss_dssp             EEEEEEECSSEEEEEEEET-TCCEEEEEEEECCC---------SCHHHHHHHHHHHHHHHHHH---H----TSCCEEEEE
T ss_pred             eEEEEEECCCEEEEEEEeC-CCCEEEEEEecCCC---------CCHHHHHHHHHHHHHHHHHh---c----CCccEEEEE
Confidence            5778999999999999998 89999887665531         25778888888888887755   2    246777777


Q ss_pred             CCcceeEEeeCCCCCccccccc
Q psy9709         105 NQRETTVVWDLNTGEPLYNAID  126 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p~i~  126 (500)
                      ..+    ++|.++|..+.+.+.
T Consensus        88 ~pG----~vd~~~g~v~~~~~~  105 (327)
T 2ap1_A           88 IPG----MPETEDGTLYAANVP  105 (327)
T ss_dssp             ESS----BSCCTTSCCBCTTCT
T ss_pred             eee----eEECCCCEEEccCCC
Confidence            666    567644655543333

>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}

Probab=97.64  E-value=0.00014  Score=70.73  Aligned_cols=80  Identities=19%  Similarity=0.273  Sum_probs=56.1

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++|||+|+|++|++++|. +|+++.+.+.+++         ..+++++++.+.+.    +++       ..+|.+|||+
T Consensus         5 ~~lgiDiGgt~i~~~l~d~-~G~il~~~~~~~~---------~~~~~~~~~~i~~~----~~~-------~~~i~gigi~   63 (297)
T 4htl_A            5 KIAAFDIGGTALKMGVVLP-HGEIILTKSAEIS---------GSDGDQILAEMKVF----LAE-------NTDVTGIAVS   63 (297)
T ss_dssp             CEEEEEECSSEEEEEEECT-TSCEEEEEEEECS---------TTCHHHHHHHHHHH----HHT-------CTTCCEEEEE
T ss_pred             EEEEEEeCCCeEEEEEECC-CCCEEEEEEecCC---------CCCHHHHHHHHHHH----Hhh-------cCCeeEEEEe
Confidence            4677999999999999998 9999998776653         12455555554433    322       2578999999


Q ss_pred             CCcceeEEeeCCCCCcccc-cc-ccCC
Q psy9709         105 NQRETTVVWDLNTGEPLYN-AI-DKMP  129 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p-~i-~w~d  129 (500)
                      ..+    ++|.++|..+.+ .+ -|.+
T Consensus        64 ~pG----~vd~~~g~v~~~~~l~~w~~   86 (297)
T 4htl_A           64 APG----YVNPKTGLITMGGAIRRFDN   86 (297)
T ss_dssp             ESS----EECTTTCEEEECTTCGGGTT
T ss_pred             cCc----ceeCCCCEEEeCCCCCCccC
Confidence            877    778656776653 33 3754

>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}

Probab=97.62  E-value=6.3e-05  Score=73.48  Aligned_cols=84  Identities=11%  Similarity=0.125  Sum_probs=59.3

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++|||+|+|++|++++|. + +++.+.+.+++         ..+++++++.+.+.++++.++   .   ..+|.+|||+
T Consensus         2 ~~lgiDiGgt~i~~~l~d~-~-~~l~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~---~~~i~gigi~   64 (302)
T 3vov_A            2 KVVGLDLGGTKIAAGVFDG-K-RLLSKVVVPTP---------KEGGERVAEALAEAAERAERE---A---GVRGEAIGLG   64 (302)
T ss_dssp             CEEEEEECSSEEEEEEECS-S-SBSCCEEEECC---------SSCHHHHHHHHHHHHHHHHHH---H---TCCCSSEEEE
T ss_pred             EEEEEEEcCCEEEEEEEeC-C-CcEEEEEEcCC---------CCChHHHHHHHHHHHHHHHhh---c---cCCceEEEEE
Confidence            4677999999999999998 6 45565555543         234588999999999988765   2   3578889988


Q ss_pred             CCcceeEEeeCCCCCccc-ccc-ccCC
Q psy9709         105 NQRETTVVWDLNTGEPLY-NAI-DKMP  129 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~-p~i-~w~d  129 (500)
                      ..+    ++|.++|.... |.+ -|.+
T Consensus        65 ~pG----~vd~~~g~v~~~~~~~~w~~   87 (302)
T 3vov_A           65 TPG----PLDFRRGVIRFAPNIPGVQD   87 (302)
T ss_dssp             ESS----CEETTTTEEC---CCTTCTT
T ss_pred             ecc----cEeCCCCEEEcCCCCCCcCC
Confidence            766    67875565553 333 3653

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=97.59  E-value=8.2e-05  Score=71.45  Aligned_cols=77  Identities=14%  Similarity=0.059  Sum_probs=58.3

Q ss_pred             hhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCC-CCCCHHHHHHHHHHH
Q psy9709         410 SIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMT-QFTTKGHIIRAALEA  488 (500)
Q Consensus       410 ~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~-~~~~~~~l~rAv~Eg  488 (500)
                      |...+|..++|+.+.|+.  +++++++++.+.+       .|+..|+|.+.   -+++.++++. .+++++|++||++|+
T Consensus       127 ca~GtG~~le~~a~~lg~--~~~el~~la~~~~-------~p~~~~~~c~v---fa~s~v~~l~~~g~~~~di~~av~e~  194 (270)
T 1hux_A          127 CAAGTGRFLDVMANILEV--KVSDLAELGAKST-------KRVAISSTCTV---FAESEVISQLSKGTDKIDIIAGIHRS  194 (270)
T ss_dssp             CCTTSHHHHHHHHHHHTC--CTTTHHHHHTTCC-------SCCCCCCCSHH---HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHhCC--CHHHHHHHHhhCC-------CCCCcccccch---hHhHHHHHHhhCCCCHHHHHHHHHHH
Confidence            444568899999998864  5777888876533       56767777652   2566677776 789999999999999


Q ss_pred             HHHHHHHHHH
Q psy9709         489 ICFQTRDILE  498 (500)
Q Consensus       489 ia~~~~~~~~  498 (500)
                      +++.+...++
T Consensus       195 Va~~i~~~~~  204 (270)
T 1hux_A          195 VASRVIGLAN  204 (270)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999876654

>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}

Probab=97.55  E-value=8.8e-05  Score=72.26  Aligned_cols=85  Identities=18%  Similarity=0.289  Sum_probs=59.1

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      +++|||+|+|++|++++|.+ |+++...+.+++.         .+++++++.+.+.    +++       ..+|.+|||+
T Consensus         5 ~~lgiDiGgt~i~~~l~d~~-G~il~~~~~~~~~---------~~~~~~~~~i~~~----~~~-------~~~i~gigi~   63 (297)
T 4htl_A            5 KIAAFDIGGTALKMGVVLPH-GEIILTKSAEISG---------SDGDQILAEMKVF----LAE-------NTDVTGIAVS   63 (297)
T ss_dssp             CEEEEEECSSEEEEEEECTT-SCEEEEEEEECST---------TCHHHHHHHHHHH----HHT-------CTTCCEEEEE
T ss_pred             EEEEEEeCCCeEEEEEECCC-CCEEEEEEecCCC---------CCHHHHHHHHHHH----Hhh-------cCCeeEEEEe
Confidence            68999999999999999985 9999877666431         2345555544433    221       2468999999


Q ss_pred             CCCceeEEEeCCCCcccc-cce-eeccCCCHH
Q psy9709         234 NQRETTVVWDLNTGEPLY-NAI-VWSDTRADN  263 (500)
Q Consensus       234 ~~~~~~v~~d~~~G~~l~-~~i-~w~D~r~~~  263 (500)
                      .++    ++|.++|..+. |.+ .|.+.+-.+
T Consensus        64 ~pG----~vd~~~g~v~~~~~l~~w~~~~l~~   91 (297)
T 4htl_A           64 APG----YVNPKTGLITMGGAIRRFDNFNLKE   91 (297)
T ss_dssp             ESS----EECTTTCEEEECTTCGGGTTEEHHH
T ss_pred             cCc----ceeCCCCEEEeCCCCCCccCCCHHH
Confidence            887    88975677765 345 377665443

>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}

Probab=97.52  E-value=0.0001  Score=71.92  Aligned_cols=90  Identities=12%  Similarity=0.120  Sum_probs=62.5

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      |++|||+|+|++|++++|.+ +. +...+.+++         ..+.+++++.+.+.++++.++.      ..+|.+|+++
T Consensus         2 ~~lgiDiGgt~i~~~l~d~~-~~-l~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~~------~~~i~gigi~   64 (302)
T 3vov_A            2 KVVGLDLGGTKIAAGVFDGK-RL-LSKVVVPTP---------KEGGERVAEALAEAAERAEREA------GVRGEAIGLG   64 (302)
T ss_dssp             CEEEEEECSSEEEEEEECSS-SB-SCCEEEECC---------SSCHHHHHHHHHHHHHHHHHHH------TCCCSSEEEE
T ss_pred             EEEEEEEcCCEEEEEEEeCC-Cc-EEEEEEcCC---------CCChHHHHHHHHHHHHHHHhhc------cCCceEEEEE
Confidence            68999999999999999975 54 444444443         1234788888888888877642      3568888998


Q ss_pred             CCCceeEEEeCCCCcccc-cce-eeccCCCHHH
Q psy9709         234 NQRETTVVWDLNTGEPLY-NAI-VWSDTRADNI  264 (500)
Q Consensus       234 ~~~~~~v~~d~~~G~~l~-~~i-~w~D~r~~~~  264 (500)
                      .++    ++|.++|.... +.+ .|.+..-.+.
T Consensus        65 ~pG----~vd~~~g~v~~~~~~~~w~~~~l~~~   93 (302)
T 3vov_A           65 TPG----PLDFRRGVIRFAPNIPGVQDFPIRRI   93 (302)
T ss_dssp             ESS----CEETTTTEEC---CCTTCTTCCHHHH
T ss_pred             ecc----cEeCCCCEEEcCCCCCCcCCCChHHH
Confidence            887    78875576653 445 5877654443

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=97.45  E-value=0.0015  Score=62.37  Aligned_cols=60  Identities=15%  Similarity=0.083  Sum_probs=43.0

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      .+++|||+||+++|++++|. ++++++....+.....  + ....|.+...+.+...++.+...
T Consensus        28 ~~~~gIDiGS~s~k~vi~~~-~~~~l~~~~~~~~~l~--~-g~i~d~~~~~~~l~~~~~~~~~~   87 (272)
T 3h1q_A           28 PYKVGVDLGTADIVLVVTDQ-EGIPVAGALKWASVVK--D-GLVVDYIGAIQIVRELKAKVERL   87 (272)
T ss_dssp             CCEEEEECCSSEEEEEEECT-TCCEEEEEEEECCCCB--T-TBCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEcccceEEEEEECC-CCcEEEEEeecccccC--C-CEEEcHHHHHHHHHHHHHHHHHh
Confidence            46777999999999999997 8999988766554222  2 34556677776666666665544

>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10

Probab=97.37  E-value=0.00055  Score=67.43  Aligned_cols=82  Identities=11%  Similarity=0.103  Sum_probs=59.8

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      .+++|||+|.|++|++++|.+ |+++...+.+++.         .+++++.+.+.+.++++..+.       ..+.+|++
T Consensus        24 ~~~lgiDiGgt~i~~~l~d~~-g~il~~~~~~~~~---------~~~~~~~~~i~~~i~~~~~~~-------~~i~~igi   86 (327)
T 2ap1_A           24 AMYYGFDIGGTKIALGVFDST-RRLQWEKRVPTPH---------TSYSAFLDAVCELVEEADQRF-------GVKGSVGI   86 (327)
T ss_dssp             CEEEEEEECSSEEEEEEEETT-CCEEEEEEEECCC---------SCHHHHHHHHHHHHHHHHHHH-------TSCCEEEE
T ss_pred             ceEEEEEECCCEEEEEEEeCC-CCEEEEEEecCCC---------CCHHHHHHHHHHHHHHHHHhc-------CCccEEEE
Confidence            479999999999999999985 9999877665431         256778888888888776542       24777888


Q ss_pred             cCCCceeEEEeCCCCccccccee
Q psy9709         233 TNQRETTVVWDLNTGEPLYNAIV  255 (500)
Q Consensus       233 s~~~~~~v~~d~~~G~~l~~~i~  255 (500)
                      +.++    ++|.++|....+.+.
T Consensus        87 ~~pG----~vd~~~g~v~~~~~~  105 (327)
T 2ap1_A           87 GIPG----MPETEDGTLYAANVP  105 (327)
T ss_dssp             EESS----BSCCTTSCCBCTTCT
T ss_pred             Eeee----eEECCCCEEEccCCC
Confidence            8777    778744665543333

>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}

Probab=97.33  E-value=0.00014  Score=72.93  Aligned_cols=94  Identities=13%  Similarity=0.110  Sum_probs=65.0

Q ss_pred             ccCCEEEEEeccCCCceEEEEeCCCCeEEEEe-eeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709         150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSH-SMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV  228 (500)
Q Consensus       150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~-~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~  228 (500)
                      ....+++|||+|.|++|++++| . |+++... +.+++.         .+++++.+.+.+.+. .++++    .. .+|.
T Consensus         6 ~d~~~~lgiDIGgt~i~~~l~d-~-G~il~~~~~~~~~~---------~~~~~~l~~i~~~~~-~i~~~----~~-~~i~   68 (366)
T 3mcp_A            6 NDNRIVMTLDAGGTNFVFSAIQ-G-GKEIADPVVLPACA---------DCLDKCLGNLVEGFK-AIQAG----LP-EAPV   68 (366)
T ss_dssp             TCCCEEEEEECSSSEEEEEEEE-T-TEECSCCEEEECCT---------TCHHHHHHHHHHHHH-HHHTT----CS-SCCC
T ss_pred             CCCCEEEEEEECcceEEEEEEE-C-CEEEEEEEEEECCC---------CCHHHHHHHHHHHHH-HHHHH----hh-cCCe
Confidence            3467899999999999999999 6 9988655 454431         167888877776322 22211    11 5789


Q ss_pred             EEEEcCCCceeEEEeCCCCcccc-cce-eec-cCCCHHH
Q psy9709         229 TLGITNQRETTVVWDLNTGEPLY-NAI-VWS-DTRADNI  264 (500)
Q Consensus       229 ~I~vs~~~~~~v~~d~~~G~~l~-~~i-~w~-D~r~~~~  264 (500)
                      +|||+.++    ++|.++|.... |.+ .|. +..-.+.
T Consensus        69 gIGIavPG----~Vd~~~G~i~~~~nlp~w~~~~~l~~~  103 (366)
T 3mcp_A           69 AISFAFPG----PADYQAGIIGDLPNFPSFRGGVALGPF  103 (366)
T ss_dssp             EEEEECCS----SEETTTTEECCCTTCGGGTTCBCHHHH
T ss_pred             EEEEEecc----eEeCCCCEEEeCCCcccccCCCCHHHH
Confidence            99999888    88975677664 556 687 6654443

>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10

Probab=97.31  E-value=0.00051  Score=65.68  Aligned_cols=86  Identities=12%  Similarity=0.089  Sum_probs=54.8

Q ss_pred             EEEEEecCCCcceEEEEeCCC-CcEEEEE-EeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALT-QEEVVSH-SMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~-g~~l~~~-~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      +++|||+|+|++|++++|. + |+++... +.+++        ...+++++++.+.+.++++.++   ... ...+.+||
T Consensus        13 ~~lgidiggt~i~~~l~dl-~~g~i~~~~~~~~~~--------~~~~~~~~~~~i~~~i~~~~~~---~~~-~~~~~~ig   79 (267)
T 1woq_A           13 PLIGIDIGGTGIKGGIVDL-KKGKLLGERFRVPTP--------QPATPESVAEAVALVVAELSAR---PEA-PAAGSPVG   79 (267)
T ss_dssp             CEEEEEECSSEEEEEEEET-TTTEEEEEEEEEECC--------SSCCHHHHHHHHHHHHHHHHTS---TTC-CCTTCCEE
T ss_pred             EEEEEEECCCEEEEEEEEC-CCCeEEEEEEecCCC--------ccCCHHHHHHHHHHHHHHHHHh---ccc-cCccceEE
Confidence            5677999999999999997 6 6777432 33332        1246888999999888887643   221 12344566


Q ss_pred             EcCCcceeEEeeCCCCCccc-ccc--ccCC
Q psy9709         103 ITNQRETTVVWDLNTGEPLY-NAI--DKMP  129 (500)
Q Consensus       103 is~~~~~~v~~d~~~g~pl~-p~i--~w~d  129 (500)
                      |+..+    ++|.  |..+. |.+  .|.+
T Consensus        80 i~~pG----~v~~--g~v~~~~~l~~~w~~  103 (267)
T 1woq_A           80 VTFPG----IIQH--GVVHSAANVDKSWLN  103 (267)
T ss_dssp             EEESS----CEET--TEECCCTTSCGGGTT
T ss_pred             EEccc----eEcC--CEEEeCCCCCCCCCC
Confidence            66544    3463  66553 444  3764

>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10

Probab=97.29  E-value=0.0003  Score=67.98  Aligned_cols=82  Identities=13%  Similarity=0.112  Sum_probs=55.6

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++|||+|+|++|++++|. +|+++.+.+.+++.        ..+++++.+.+.+.++++.++          +.+|||+
T Consensus         2 ~~lgidiggt~~~~~l~d~-~g~il~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~----------~~~igi~   62 (289)
T 2aa4_A            2 TTLAIDIGGTKLAAALIGA-DGQIRDRRELPTPA--------SQTPEALRDALSALVSPLQAH----------AQRVAIA   62 (289)
T ss_dssp             CEEEEEECSSEEEEEEECT-TCCEEEEEEEECCS--------SCCHHHHHHHHHHHHTTTGGG----------CSEEEEE
T ss_pred             eEEEEEeCCCEEEEEEECC-CCCEEEEEEecCCC--------CCCHHHHHHHHHHHHHHHHhh----------CCEEEEE
Confidence            3567999999999999998 89999887766541        135788888887777665432          2356665


Q ss_pred             CCcceeEEeeCCCCCccc-ccc-ccCC
Q psy9709         105 NQRETTVVWDLNTGEPLY-NAI-DKMP  129 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~-p~i-~w~d  129 (500)
                      ..+    ++|.++|..+. |.+ -|.+
T Consensus        63 ~pG----~vd~~~g~v~~~~~~~~w~~   85 (289)
T 2aa4_A           63 STG----IIRDGSLLALNPHNLGGLLH   85 (289)
T ss_dssp             ESS----EEETTEEECSSGGGGGGGTT
T ss_pred             ecc----ceeCCCCEEEeCCCCCcccC
Confidence            544    66774455443 344 3753

>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}

Probab=97.23  E-value=0.00039  Score=69.63  Aligned_cols=84  Identities=15%  Similarity=0.139  Sum_probs=58.6

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEE-EeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSH-SMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~-~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      .+++|||+|+|++|++++|  +|+++.+. +.+++        .. +++++.+.+.+.++ ++++   . . ..+|.+||
T Consensus         9 ~~~lgiDIGgt~i~~~l~d--~G~il~~~~~~~~~--------~~-~~~~~l~~i~~~~~-~i~~---~-~-~~~i~gIG   71 (366)
T 3mcp_A            9 RIVMTLDAGGTNFVFSAIQ--GGKEIADPVVLPAC--------AD-CLDKCLGNLVEGFK-AIQA---G-L-PEAPVAIS   71 (366)
T ss_dssp             CEEEEEECSSSEEEEEEEE--TTEECSCCEEEECC--------TT-CHHHHHHHHHHHHH-HHHT---T-C-SSCCCEEE
T ss_pred             CEEEEEEECcceEEEEEEE--CCEEEEEEEEEECC--------CC-CHHHHHHHHHHHHH-HHHH---H-h-hcCCeEEE
Confidence            5788899999999999999  59999876 55553        12 78888888877332 2222   1 1 16799999


Q ss_pred             EcCCcceeEEeeCCCCCccc-ccc-ccC
Q psy9709         103 ITNQRETTVVWDLNTGEPLY-NAI-DKM  128 (500)
Q Consensus       103 is~~~~~~v~~d~~~g~pl~-p~i-~w~  128 (500)
                      |+..+    ++|.++|.... |.+ -|.
T Consensus        72 IavPG----~Vd~~~G~i~~~~nlp~w~   95 (366)
T 3mcp_A           72 FAFPG----PADYQAGIIGDLPNFPSFR   95 (366)
T ss_dssp             EECCS----SEETTTTEECCCTTCGGGT
T ss_pred             EEecc----eEeCCCCEEEeCCCccccc
Confidence            99877    67865576653 344 465

>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*

Probab=97.22  E-value=0.00041  Score=67.44  Aligned_cols=97  Identities=8%  Similarity=0.044  Sum_probs=63.3

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      +++|||+|+|++|++++|.+ |+++...+.+++      .+.+++++++++.+.+++++++++         .+.+||++
T Consensus         3 ~~lgiDiGgt~~~~~l~d~~-g~i~~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~~~~---------~~~~igi~   66 (299)
T 2e2o_A            3 IIVGVDAGGTKTKAVAYDCE-GNFIGEGSSGPG------NYHNVGLTRAIENIKEAVKIAAKG---------EADVVGMG   66 (299)
T ss_dssp             CEEEEEECSSCEEEEEECTT-SCEEEEEEESCC------CHHHHCHHHHHHHHHHHHHHHHTS---------CCSEEEEE
T ss_pred             EEEEEEeCCCcEEEEEEcCC-CCEEEEEeCCCC------CcccCCHHHHHHHHHHHHHHHHhc---------CCCEEEEE
Confidence            78999999999999999985 999987665543      122467889999999888887642         14566665


Q ss_pred             CCCce----eEEEeCCCCccc-ccceeeccCCCHHHHHH
Q psy9709         234 NQRET----TVVWDLNTGEPL-YNAIVWSDTRADNIVDQ  267 (500)
Q Consensus       234 ~~~~~----~v~~d~~~G~~l-~~~i~w~D~r~~~~~~~  267 (500)
                      .++..    .+.+.+.-.+ + .|++.++|.++....+.
T Consensus        67 ~~G~~~~~~~~~l~~~l~~-~~~pv~v~ND~~aaa~~e~  104 (299)
T 2e2o_A           67 VAGLDSKFDWENFTPLASL-IAPKVIIQHDGVIALFAET  104 (299)
T ss_dssp             ETTCCSHHHHHHHHHHHTT-SSSEEEEEEHHHHHHHHHH
T ss_pred             cCCCCchhHHHHHHHHHHh-CCCCEEEeCcHHHHHhhcc
Confidence            55410    0111110001 1 36677888777665554

>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A

Probab=97.21  E-value=0.00094  Score=68.69  Aligned_cols=74  Identities=8%  Similarity=-0.031  Sum_probs=50.4

Q ss_pred             EEEEecCCCcceEEEEeCCCCcE---EEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCC-CCC-eeE
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEE---VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS-RDD-IVT  100 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~---l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~-~~~-i~~  100 (500)
                      ++|||+|+|++|++++|. +|++   +...+.+++    .+ -...+++++++.+.+++++++++   .+.. .+. ..|
T Consensus        63 ~laiDlGGTnirv~lV~~-~G~~~~~~~~~~~~ip----~~-~~~~~~~~lfd~Ia~~i~~~~~~---~~~~~~~~~~lG  133 (457)
T 2yhx_A           63 FLAIVMGGGDLEVILISL-AGRQESSIXASRSLAA----AM-STTAIPSDLWGNXAXSNAAFSSX---EFSSXAGSVPLG  133 (457)
T ss_dssp             EEEEEECSSEEEEEEEEE-ETTEEEEEEEEEECCT----TT-TSCSCTHHHHHHHHHHHHHHHHH---HTSSCSSCEEEE
T ss_pred             EEEEEeCCCeEEEEEEEe-CCCeeEEEeeEEEEcC----Cc-cCCCCHHHHHHHHHHHHHHHHhh---ccccccccccee
Confidence            466999999999999998 8988   443333332    11 01236799999999999999876   2221 122 567


Q ss_pred             EEEcCCcc
Q psy9709         101 LGITNQRE  108 (500)
Q Consensus       101 Igis~~~~  108 (500)
                      ||++....
T Consensus       134 i~fs~P~~  141 (457)
T 2yhx_A          134 FTFXEAGA  141 (457)
T ss_dssp             EECCSCCC
T ss_pred             eEEEEEEE
Confidence            77777553

>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10

Probab=97.17  E-value=0.0003  Score=68.04  Aligned_cols=87  Identities=13%  Similarity=0.045  Sum_probs=59.3

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      +++|||+|.|++|++++|.+ |+++...+.+++.        ..+++++.+.+.+.++++.+          ++.+|+++
T Consensus         2 ~~lgidiggt~~~~~l~d~~-g~il~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~----------~~~~igi~   62 (289)
T 2aa4_A            2 TTLAIDIGGTKLAAALIGAD-GQIRDRRELPTPA--------SQTPEALRDALSALVSPLQA----------HAQRVAIA   62 (289)
T ss_dssp             CEEEEEECSSEEEEEEECTT-CCEEEEEEEECCS--------SCCHHHHHHHHHHHHTTTGG----------GCSEEEEE
T ss_pred             eEEEEEeCCCEEEEEEECCC-CCEEEEEEecCCC--------CCCHHHHHHHHHHHHHHHHh----------hCCEEEEE
Confidence            57999999999999999985 9999877666541        12477777777776665542          23467777


Q ss_pred             CCCceeEEEeCCCCcccc-cce-eeccCCCHH
Q psy9709         234 NQRETTVVWDLNTGEPLY-NAI-VWSDTRADN  263 (500)
Q Consensus       234 ~~~~~~v~~d~~~G~~l~-~~i-~w~D~r~~~  263 (500)
                      .++    ++|.++|..+. |.+ .|.+..-.+
T Consensus        63 ~pG----~vd~~~g~v~~~~~~~~w~~~~l~~   90 (289)
T 2aa4_A           63 STG----IIRDGSLLALNPHNLGGLLHFPLVK   90 (289)
T ss_dssp             ESS----EEETTEEECSSGGGGGGGTTCCHHH
T ss_pred             ecc----ceeCCCCEEEeCCCCCcccCCChHH
Confidence            676    78874455443 444 377665433

>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}

Probab=97.16  E-value=0.00038  Score=64.77  Aligned_cols=123  Identities=13%  Similarity=-0.013  Sum_probs=67.2

Q ss_pred             cCcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          22 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        22 ~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      ++.++++||+|+|++|  ++|. +|++  ..+.+++        ...+++++.+.+.+    ++++        .++.+|
T Consensus         4 ~~~~~lgiDIGGT~i~--~~d~-~g~~--~~~~~t~--------~~~~~~~~~~~i~~----~i~~--------~~i~gi   58 (226)
T 3lm2_A            4 EDQTVLAIDIGGSHVK--IGLS-TDGE--ERKVESG--------KTMTGPEMVAAVTA----MAKD--------MTYDVI   58 (226)
T ss_dssp             GGCCEEEEEECSSEEE--EEET-TTCC--EEEEECC--------TTCCHHHHHHHHHH----HTTT--------CCCSEE
T ss_pred             cCCEEEEEEECCCEEE--EEEC-CCCE--EEEEECC--------CCCCHHHHHHHHHH----HHHh--------CCCCEE
Confidence            3445677999999999  5787 8876  2333332        23466666655544    3322        268889


Q ss_pred             EEcCCcceeEEeeCCCCCcccc-cc--ccCCccccCCCCCCCCCCC-Cc-ccc----ccCCEEEEEeccCCCceEEEEeC
Q psy9709         102 GITNQRETTVVWDLNTGEPLYN-AI--DKMPSLVYNTPPEPSSNTN-NN-SIQ----TQVPLIGVIDEGTRTVRFAIISA  172 (500)
Q Consensus       102 gis~~~~~~v~~d~~~g~pl~p-~i--~w~d~~~~~~t~~~~~~~~-n~-~~~----~~~~~~lgIDiGTts~k~~l~d~  172 (500)
                      ||+..+    ++|. ++..+.+ -+  .|.+-...++...  +-.. |. ...    ....-++.+-+|| .+=++++- 
T Consensus        59 gi~~pG----~Vd~-~~~~~~~~nl~~~w~~~~l~~~~~~--pv~v~NDanaaalge~~~~~~~~l~~Gt-GiG~gii~-  129 (226)
T 3lm2_A           59 AMGYPG----PVVH-NKPLREPVNLGEGWVGYDYEGAFGR--PVRIVNDALMQAIGSYNGGRMLFLGLGT-GLGAAMIV-  129 (226)
T ss_dssp             EEEESS----CEET-TEECSCCTTSCSCCTTCCHHHHHTS--CEEEEEHHHHHHHHHCCSSEEEEEEESS-SEEEEEEE-
T ss_pred             EEEEEe----EEEC-CeEEEECCcCCccccCCchHHhcCC--eEEEEEHHHHHHHHHhhcCcEEEEEeCC-ceEEEEEE-
Confidence            988766    5687 4655543 34  4865433222110  0111 22 100    1112355677775 46666665 


Q ss_pred             CCCeEEE
Q psy9709         173 LTQEEVV  179 (500)
Q Consensus       173 ~~G~vi~  179 (500)
                      + |+++.
T Consensus       130 ~-G~l~~  135 (226)
T 3lm2_A          130 E-NVAQP  135 (226)
T ss_dssp             T-TEEEE
T ss_pred             C-CEEee
Confidence            3 88764

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=97.12  E-value=0.00084  Score=64.94  Aligned_cols=69  Identities=16%  Similarity=0.252  Sum_probs=49.8

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++|||+|+|++|++++|. +|+++.+.+.+++          .+++++.+.+.+.+++            .++.+|||+.
T Consensus         6 ~lgidiggt~i~~~l~d~-~g~il~~~~~~~~----------~~~~~~~~~i~~~i~~------------~~i~gigi~~   62 (292)
T 2gup_A            6 IATIDIGGTGIKFASLTP-DGKILDKTSISTP----------ENLEDLLAWLDQRLSE------------QDYSGIAMSV   62 (292)
T ss_dssp             EEEEEEETTEEEEEEECT-TCCEEEEEEECCC----------SSHHHHHHHHHHHHTT------------SCCSEEEEEE
T ss_pred             EEEEEECCCEEEEEEECC-CCCEEEEEEEeCC----------CCHHHHHHHHHHHHHh------------CCCcEEEEEe
Confidence            567999999999999998 8999987665442          2566666555444332            4688888887


Q ss_pred             CcceeEEeeCCCCCcc
Q psy9709         106 QRETTVVWDLNTGEPL  121 (500)
Q Consensus       106 ~~~~~v~~d~~~g~pl  121 (500)
                      .+    ++|.++|...
T Consensus        63 pG----~vd~~~g~v~   74 (292)
T 2gup_A           63 PG----AVNQETGVID   74 (292)
T ss_dssp             SS----EECTTTCBEE
T ss_pred             cC----cccCCCCEEE
Confidence            76    6787457655

>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10

Probab=97.09  E-value=0.0008  Score=64.27  Aligned_cols=94  Identities=15%  Similarity=0.168  Sum_probs=59.2

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEE-eeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVS-HSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~-~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      .+++|||+|.|++|++++|...|+++.. .+.+++    .    ..+++++.+.+.+.++++.++.   + ....+.+||
T Consensus        12 ~~~lgidiggt~i~~~l~dl~~g~i~~~~~~~~~~----~----~~~~~~~~~~i~~~i~~~~~~~---~-~~~~~~~ig   79 (267)
T 1woq_A           12 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTP----Q----PATPESVAEAVALVVAELSARP---E-APAAGSPVG   79 (267)
T ss_dssp             CCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECC----S----SCCHHHHHHHHHHHHHHHHTST---T-CCCTTCCEE
T ss_pred             CEEEEEEECCCEEEEEEEECCCCeEEEEEEecCCC----c----cCCHHHHHHHHHHHHHHHHHhc---c-ccCccceEE
Confidence            3689999999999999999743677743 233332    0    1357788888888877765421   1 112344677


Q ss_pred             EcCCCceeEEEeCCCCcccc-cce--eeccCCCHHH
Q psy9709         232 ITNQRETTVVWDLNTGEPLY-NAI--VWSDTRADNI  264 (500)
Q Consensus       232 vs~~~~~~v~~d~~~G~~l~-~~i--~w~D~r~~~~  264 (500)
                      |+.++    ++|.  |..+. |.+  .|.+..-.+.
T Consensus        80 i~~pG----~v~~--g~v~~~~~l~~~w~~~~l~~~  109 (267)
T 1woq_A           80 VTFPG----IIQH--GVVHSAANVDKSWLNTDIDAL  109 (267)
T ss_dssp             EEESS----CEET--TEECCCTTSCGGGTTCBHHHH
T ss_pred             EEccc----eEcC--CEEEeCCCCCCCCCCCCHHHH
Confidence            77666    5573  77654 445  3876654443

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=97.02  E-value=0.0012  Score=63.39  Aligned_cols=116  Identities=14%  Similarity=0.136  Sum_probs=67.5

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      +++|||+|||++|++++|. +++++.....++       |..   ++ .   ..+.+++++++   ++....++.+++++
T Consensus         2 ~~lGID~GsT~tk~av~d~-~~~il~~~~~~~-------g~~---~e-~---a~~vl~~~~~~---a~~~~~~~~~~a~t   63 (276)
T 4ehu_A            2 YTMGLDIGSTASKGVILKN-GEDIVASETISS-------GTG---TT-G---PSRVLEKLYGK---TGLAREDIKKVVVT   63 (276)
T ss_dssp             EEEEEEECSSCEEEEEEET-TTEEEEEEEESC-------CTT---SS-H---HHHHHHHHHHH---HCCCGGGEEEEEEE
T ss_pred             eEEEEEcCccEEEEEEEEC-CCeEEEEEEecC-------CCC---HH-H---HHHHHHHHHHH---CCCcchhccccccC
Confidence            5777999999999999997 888887654332       211   22 1   23356677666   67778889998887


Q ss_pred             CCcceeEEeeCCCCCccccccccCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCCCeEE
Q psy9709         105 NQRETTVVWDLNTGEPLYNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEV  178 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G~vi  178 (500)
                      +...-.      -..|+..+-        |-++.-    .-.... .......+|+|++..++.+++.+ |.+.
T Consensus        64 ~~~~~a------~~~~~~~Vn--------e~~aha----~a~~~~-~~~~~~vl~lgG~~~~~~~~~~~-g~~~  117 (276)
T 4ehu_A           64 GYGRMN------YSDADKQIS--------ELSCHA----RGVNFI-IPETRTIIDIGGQDAKVLKLDNN-GRLL  117 (276)
T ss_dssp             STTGGG------CCSCSEECC--------HHHHHH----HHHHHH-STTCCEEEEECSSCEEEEEECTT-SCEE
T ss_pred             chHHHH------hhCCCcccc--------hHHHHH----HHHHHh-CCCCCeEEEEcCCCceEEEEEec-CceE
Confidence            654321      122222110        000000    000000 01112458999999999999864 7654

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5

Probab=97.01  E-value=0.00073  Score=65.45  Aligned_cols=68  Identities=18%  Similarity=0.102  Sum_probs=48.7

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++|||+|+|++|++++|  +|+++.+.+.+...      ....+++++++.+.+.++++..      .+..+|.+|||+.
T Consensus         2 ~lgiDiGGT~~~~~l~d--~g~il~~~~~~~~~------~~~~~~~~~~~~i~~~i~~~~~------~~~~~i~~igig~   67 (291)
T 1zbs_A            2 ILIGDSGSTKTDWCIAK--EGKSLGRFQTSGIN------PFQQDRNEIDTALRSEVLPAIG------QKASSIRAVYFYG   67 (291)
T ss_dssp             EEEEEECSSEEEEEEEE--TTEEEEEEEEECCC------TTTSCHHHHHHHHTTTTHHHHT------TSTTTCCEEEEEE
T ss_pred             EEEEEeCccceEEEEEe--CCeEEEEEECCCCC------cccCCHHHHHHHHHHHHHHHhC------CCcccccEEEEEC
Confidence            46799999999999999  59999877653310      0124688888888888876531      2345687888776


Q ss_pred             Cc
Q psy9709         106 QR  107 (500)
Q Consensus       106 ~~  107 (500)
                      -+
T Consensus        68 pG   69 (291)
T 1zbs_A           68 AG   69 (291)
T ss_dssp             TT
T ss_pred             CC
Confidence            55

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=96.92  E-value=0.0011  Score=64.08  Aligned_cols=79  Identities=15%  Similarity=0.183  Sum_probs=54.7

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      +++|||+|.|++|++++|.+ |+++...+.+++          .+++++.+.+.+.+++            .++.+||++
T Consensus         5 ~~lgidiggt~i~~~l~d~~-g~il~~~~~~~~----------~~~~~~~~~i~~~i~~------------~~i~gigi~   61 (292)
T 2gup_A            5 TIATIDIGGTGIKFASLTPD-GKILDKTSISTP----------ENLEDLLAWLDQRLSE------------QDYSGIAMS   61 (292)
T ss_dssp             CEEEEEEETTEEEEEEECTT-CCEEEEEEECCC----------SSHHHHHHHHHHHHTT------------SCCSEEEEE
T ss_pred             EEEEEEECCCEEEEEEECCC-CCEEEEEEEeCC----------CCHHHHHHHHHHHHHh------------CCCcEEEEE
Confidence            48999999999999999985 999877655432          2466665555444332            468889998


Q ss_pred             CCCceeEEEeCCCCcccc-ccee-eccC
Q psy9709         234 NQRETTVVWDLNTGEPLY-NAIV-WSDT  259 (500)
Q Consensus       234 ~~~~~~v~~d~~~G~~l~-~~i~-w~D~  259 (500)
                      .++    ++|.++|.... |.+. |.+.
T Consensus        62 ~pG----~vd~~~g~v~~~~~~~~~~~~   85 (292)
T 2gup_A           62 VPG----AVNQETGVIDGFSAVPYIHGF   85 (292)
T ss_dssp             ESS----EECTTTCBEESCCSSGGGSSS
T ss_pred             ecC----cccCCCCEEEecCCCCcccCC
Confidence            887    88874576553 4443 5444

>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}

Probab=96.84  E-value=0.0033  Score=61.50  Aligned_cols=147  Identities=18%  Similarity=0.190  Sum_probs=81.0

Q ss_pred             EEEEEecCCCcceEEEEeCCCCc--EEEEEEeeeeeecCCCCcc---ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQE--EVVSHSMDISTISPQEGWA---EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   99 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~--~l~~~~~~~~~~~~~~g~~---e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~   99 (500)
                      .+++||+||.++|..|++..++.  ++...+....   -..|-.   ..+++ -.+..++++++..+.++..++  ++|.
T Consensus         5 ~~A~IDiGSNsirL~I~~~~~~~~~~i~~~k~~vr---Lg~g~~~~g~ls~e-ai~r~~~~L~~f~~~~~~~~v--~~v~   78 (315)
T 3mdq_A            5 RIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVG---LGKGGITKGFITEE-AMDRALDTLKKFRVILDEHAV--VHVI   78 (315)
T ss_dssp             EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECC---SSTTTGGGTCCCHH-HHHHHHHHHHHHHHHHHHTTC--CEEE
T ss_pred             eEEEEEecCCcEEEEEEEEcCCceEEeeeceeeee---ccccccccCCcCHH-HHHHHHHHHHHHHHHHHHcCC--CEEE
Confidence            46779999999999999973343  3333333332   122211   22333 445556666666555444554  6799


Q ss_pred             EEEEcCCcceeEEeeCCCCCccccccc--------cCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEe
Q psy9709         100 TLGITNQRETTVVWDLNTGEPLYNAID--------KMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIIS  171 (500)
Q Consensus       100 ~Igis~~~~~~v~~d~~~g~pl~p~i~--------w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d  171 (500)
                      +++-++.|      |+.|++-+-.-+-        +.+..-..+..|. ... + .......-.+.+|||+.|+-.++++
T Consensus        79 ~vATsA~R------~A~N~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~-gv~-~-~~~~~~~~~lviDIGGGStEl~~~~  149 (315)
T 3mdq_A           79 ATGTSAVR------SGSNKQVLIDRIKKEVNIDVEVIDGAREAELIFR-GVQ-Q-AVPMEDHISLAMDIGGGSVEFIIGN  149 (315)
T ss_dssp             EEECHHHH------HCTTHHHHHHHHHHHHCCCEEECCHHHHHHHHHH-HHH-H-HSCCTTCCEEEEEECSSCEEEEEEC
T ss_pred             EEeeHHHH------cCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHH-HHH-h-cCCCCCCCEEEEEeCCCceEEEEEE
Confidence            99999888      4434443322221        1111100000111 000 0 0111112367799999999999998


Q ss_pred             CCCCeEEEEeeeecccc
Q psy9709         172 ALTQEEVVSHSMDISTI  188 (500)
Q Consensus       172 ~~~G~vi~~~~~~~~~~  188 (500)
                        ++++....+.++..+
T Consensus       150 --~~~~~~~~Sl~lG~v  164 (315)
T 3mdq_A          150 --KNEILWKQSFEIGGQ  164 (315)
T ss_dssp             --SSCEEEEEEESCCHH
T ss_pred             --CCeEeeeEEEechhh
Confidence              388888778877644

>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3

Probab=96.83  E-value=0.0042  Score=63.85  Aligned_cols=75  Identities=16%  Similarity=0.199  Sum_probs=47.7

Q ss_pred             EEEEEecCCCcceEEEEeCCCC-cE-EEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQ-EE-VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g-~~-l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      .++|||+|+||+|+++++. +| +- +......+..  |.+ -...+.+++++.+.+++++.+++   .+...+. ..||
T Consensus        69 ~~lalDlGGTn~Rv~~V~l-~G~~~~~~i~~~~~~i--p~~-~~~~~~~~lfd~Ia~~i~~~l~~---~~~~~~~-~~lG  140 (451)
T 1bdg_A           69 NFLALDLGGTNYRVLSVTL-EGKGKSPRIQERTYCI--PAE-KMSGSGTELFKYIAETLADFLEN---NGMKDKK-FDLG  140 (451)
T ss_dssp             EEEEEEESSSSEEEEEEEE-CC-CCCCEEEEEEECC--CTT-TTTSBHHHHHHHHHHHHHHHHHH---TTCCSSC-EEEE
T ss_pred             eEEEEEeCCCeEEEEEEec-CCCCcceEEEEEEEec--CCc-ccCCCHHHHHHHHHHHHHHHHHh---cCCCccc-cceE
Confidence            3566999999999999998 78 51 1111122221  111 12346799999999999999987   5554333 4555


Q ss_pred             EcCCc
Q psy9709         103 ITNQR  107 (500)
Q Consensus       103 is~~~  107 (500)
                      ++.-.
T Consensus       141 ~tfsf  145 (451)
T 1bdg_A          141 FTFSF  145 (451)
T ss_dssp             EEECS
T ss_pred             EEEee
Confidence            55433

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=96.83  E-value=0.0018  Score=61.73  Aligned_cols=65  Identities=14%  Similarity=0.158  Sum_probs=47.5

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      +++||+|.|++|.++||.  ++++...+.+++ .        ...+++.    ..++++++.   .+++.++|.+|+||+
T Consensus         4 lL~IDIGNT~iK~gl~d~--~~l~~~~r~~T~-~--------~t~de~~----~~l~~ll~~---~~~~~~~I~~iiISS   65 (266)
T 3djc_A            4 ILCIDVGNSHIYGGVFDG--DEIKLRFRHTSK-V--------STSDELG----IFLKSVLRE---NNCSPETIRKIAICS   65 (266)
T ss_dssp             EEEEEECSSEEEEEEEET--TEEEEEEEEECS-C--------CCHHHHH----HHHHHHHHT---TTCCGGGCCEEEEEE
T ss_pred             EEEEEECCCeEEEEEEEC--CEEEEEEEecCC-C--------CCHHHHH----HHHHHHHHH---cCCChhhceEEEEec
Confidence            456999999999999995  688888877764 2        2455554    344555554   666677899999998


Q ss_pred             Ccc
Q psy9709         106 QRE  108 (500)
Q Consensus       106 ~~~  108 (500)
                      ...
T Consensus        66 Vvp   68 (266)
T 3djc_A           66 VVP   68 (266)
T ss_dssp             SCH
T ss_pred             chH
Confidence            654

>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*

Probab=96.69  E-value=0.0016  Score=64.37  Aligned_cols=78  Identities=12%  Similarity=-0.041  Sum_probs=48.2

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|+|++|++++|..+|+++.+.+.++..           .+    .+.+.+++++++   .+   .+|.+|||
T Consensus        14 ~~~lgiDiGGT~i~~~l~dl~~g~i~~~~~~~~~~-----------~~----~~~~~i~~~~~~---~~---~~i~gigi   72 (332)
T 1sz2_A           14 KYALVGDVGGTNARLALCDIASGEISQAKTYSGLD-----------YP----SLEAVIRVYLEE---HK---VEVKDGCI   72 (332)
T ss_dssp             CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG-----------CS----CHHHHHHHHHHH---SC---CCCCEEEE
T ss_pred             CEEEEEEechhheEEEEEECCCCcEEEEEEecCCC-----------cC----CHHHHHHHHHHh---cC---CCccEEEE
Confidence            56778999999999999993169888755443320           11    233445555554   32   36888888


Q ss_pred             cCCcceeEEeeCCCCCccccccccC
Q psy9709         104 TNQRETTVVWDLNTGEPLYNAIDKM  128 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~p~i~w~  128 (500)
                      +..+    ++|.  |....|.+.|.
T Consensus        73 ~~pG----~vd~--~~~~~~nl~w~   91 (332)
T 1sz2_A           73 AIAC----PITG--DWVAMTNHTWA   91 (332)
T ss_dssp             EESS----CCCS--SEECCSSSCCC
T ss_pred             EEeC----ceeC--CEEeeeCCCCc
Confidence            8666    4564  43333444564

>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*

Probab=96.67  E-value=0.0034  Score=70.31  Aligned_cols=73  Identities=14%  Similarity=0.160  Sum_probs=50.7

Q ss_pred             EEEEecCCCcceEEEEeCCCCc----E-EEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCC-ee
Q psy9709          26 IGVIDEGTRTVRFAIISALTQE----E-VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD-IV   99 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~----~-l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~-i~   99 (500)
                      ++|||+|+|++|++++|. +|+    + +...+.+++..     ..+.+.+++++.+.+++++++++   .++..+. ..
T Consensus        80 ~laiDlGGTnirv~lv~~-~G~~~~~i~~~~~~~~ip~~-----~~~~~~~~lf~~Ia~~i~~~l~~---~~~~~~~~~l  150 (917)
T 1cza_N           80 FIALDLGGSSFRILRVQV-NHEKNQNVHMESEVYDTPEN-----IVHGSGSQLFDHVAECLGDFMEK---RKIKDKKLPV  150 (917)
T ss_dssp             EEEEEESSSSEEEEEEEE-EEETTEEEEEEEEEECCCHH-----HHSSBHHHHHHHHHHHHHHHHHH---HTCTTSCCCE
T ss_pred             EEEEEeCCCeEEEEEEEe-cCCCcceEEEEEEEEECCcc-----cccCCHHHHHHHHHHHHHHHHHh---cCCCCCcccE
Confidence            466999999999999998 776    4 44444444311     01236789999999999999876   3332222 56


Q ss_pred             EEEEcCCc
Q psy9709         100 TLGITNQR  107 (500)
Q Consensus       100 ~Igis~~~  107 (500)
                      |||+++..
T Consensus       151 Gi~fs~P~  158 (917)
T 1cza_N          151 GFTFSFPC  158 (917)
T ss_dssp             EEEECSCE
T ss_pred             EEEEcccc
Confidence            88888754

>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*

Probab=96.64  E-value=0.0012  Score=66.51  Aligned_cols=71  Identities=15%  Similarity=0.215  Sum_probs=45.9

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHH---HHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAV---QTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~---~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      +++|||+|+|++|++++|. + +++.+.+.+++...      ..+++++.+.+   .+.+.+++++   .++...+|.+|
T Consensus         3 ~vlgidiGgt~ik~al~d~-~-~il~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~l~~---~~~~~~~i~gI   71 (381)
T 1saz_A            3 RILTINPGSTSTKLSIFED-E-RMVKMQNFSHSPDE------LGRFQKILDQLEFREKIARQFVEE---TGYSLSSFSAF   71 (381)
T ss_dssp             EEEEEEECSSEEEEEEEET-T-EEEEEEEEECCHHH------HHTCSSGGGGHHHHHHHHHHHHHT---TTCCGGGCSEE
T ss_pred             eEEEEECCccceeEEEEec-c-hheeeeecccCccc------ccchhhHHHHHHHHHHHHHHHHHH---cCCCccCceEE
Confidence            5677999999999999997 6 88888777664210      00122233344   5666666654   55555678888


Q ss_pred             EEcCCc
Q psy9709         102 GITNQR  107 (500)
Q Consensus       102 gis~~~  107 (500)
                       |+..+
T Consensus        72 -i~~pG   76 (381)
T 1saz_A           72 -VSRGG   76 (381)
T ss_dssp             -EEECC
T ss_pred             -EecCC
Confidence             66444

>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5

Probab=96.61  E-value=0.0004  Score=67.29  Aligned_cols=66  Identities=12%  Similarity=0.128  Sum_probs=36.0

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++|||+|+|++|++++|  +|+++.+.+.+...  +    ...+++++++.+.+.+++++.        ..++.+|||+.
T Consensus         2 ~lgiDiGGT~i~~~l~d--~g~il~~~~~~~~~--~----~~~~~~~~~~~i~~~i~~~~~--------~~~i~~igig~   65 (291)
T 1zxo_A            2 ILIADSGSTKTDWCVVL--NGAVIKRLGTKGIN--P----FFQSEEEIQQKLTASLLPQLP--------EGKFNAVYFYG   65 (291)
T ss_dssp             --CEECCTTCEEEEEEC--SSSEEEEEEECCCC--T----TTSCSTTTTTTTTC---------------------CEEEC
T ss_pred             EEEEEeccccEEEEEEc--CCeEEEEEECCCCC--c----ccCCHHHHHHHHHHHHHHhcC--------cccccEEEEEc
Confidence            46799999999999999  59999877653310  1    122455566666666666542        24577788776


Q ss_pred             Cc
Q psy9709         106 QR  107 (500)
Q Consensus       106 ~~  107 (500)
                      -+
T Consensus        66 pG   67 (291)
T 1zxo_A           66 AG   67 (291)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5

Probab=96.59  E-value=0.0031  Score=60.97  Aligned_cols=68  Identities=21%  Similarity=0.186  Sum_probs=48.0

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  234 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~  234 (500)
                      ++|||+|+|++|++++| + |+++...+.+...  +    ...+++++++.+.+++++..      +.+..++.+|+++.
T Consensus         2 ~lgiDiGGT~~~~~l~d-~-g~il~~~~~~~~~--~----~~~~~~~~~~~i~~~i~~~~------~~~~~~i~~igig~   67 (291)
T 1zbs_A            2 ILIGDSGSTKTDWCIAK-E-GKSLGRFQTSGIN--P----FQQDRNEIDTALRSEVLPAI------GQKASSIRAVYFYG   67 (291)
T ss_dssp             EEEEEECSSEEEEEEEE-T-TEEEEEEEEECCC--T----TTSCHHHHHHHHTTTTHHHH------TTSTTTCCEEEEEE
T ss_pred             EEEEEeCccceEEEEEe-C-CeEEEEEECCCCC--c----ccCCHHHHHHHHHHHHHHHh------CCCcccccEEEEEC
Confidence            68999999999999999 6 9999776553310  0    01356778887777776543      22345688888887


Q ss_pred             CC
Q psy9709         235 QR  236 (500)
Q Consensus       235 ~~  236 (500)
                      ++
T Consensus        68 pG   69 (291)
T 1zbs_A           68 AG   69 (291)
T ss_dssp             TT
T ss_pred             CC
Confidence            76

>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}

Probab=96.58  E-value=0.001  Score=61.80  Aligned_cols=82  Identities=12%  Similarity=0.061  Sum_probs=51.0

Q ss_pred             cccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709         149 QTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV  228 (500)
Q Consensus       149 ~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~  228 (500)
                      |+++.+++|||+|+|++|  ++|.+ |++  ..+.+++    .    ..+++++.+.+.+    ++++        .++.
T Consensus         2 m~~~~~~lgiDIGGT~i~--~~d~~-g~~--~~~~~t~----~----~~~~~~~~~~i~~----~i~~--------~~i~   56 (226)
T 3lm2_A            2 MAEDQTVLAIDIGGSHVK--IGLST-DGE--ERKVESG----K----TMTGPEMVAAVTA----MAKD--------MTYD   56 (226)
T ss_dssp             CGGGCCEEEEEECSSEEE--EEETT-TCC--EEEEECC----T----TCCHHHHHHHHHH----HTTT--------CCCS
T ss_pred             CCcCCEEEEEEECCCEEE--EEECC-CCE--EEEEECC----C----CCCHHHHHHHHHH----HHHh--------CCCC
Confidence            345668999999999999  47864 876  2333332    1    1355665555443    3321        2688


Q ss_pred             EEEEcCCCceeEEEeCCCCcccc-cce--eeccCC
Q psy9709         229 TLGITNQRETTVVWDLNTGEPLY-NAI--VWSDTR  260 (500)
Q Consensus       229 ~I~vs~~~~~~v~~d~~~G~~l~-~~i--~w~D~r  260 (500)
                      +||++.++    ++|. ++.... |.+  .|.+..
T Consensus        57 gigi~~pG----~Vd~-~~~~~~~~nl~~~w~~~~   86 (226)
T 3lm2_A           57 VIAMGYPG----PVVH-NKPLREPVNLGEGWVGYD   86 (226)
T ss_dssp             EEEEEESS----CEET-TEECSCCTTSCSCCTTCC
T ss_pred             EEEEEEEe----EEEC-CeEEEECCcCCccccCCc
Confidence            89998887    7887 454443 345  577654

>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}

Probab=96.50  E-value=0.0023  Score=64.18  Aligned_cols=84  Identities=14%  Similarity=0.049  Sum_probs=56.4

Q ss_pred             cEEEEEecCCCcceEEEEeCC---CCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709          24 PLIGVIDEGTRTVRFAIISAL---TQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT  100 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~---~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~  100 (500)
                      .+++|||+|+|++|++++|..   +|+++.+.+. ++    .     .+++++.+.+.+.++++...      .+.+|.+
T Consensus        29 ~~~lgiDiGgt~i~~~l~d~~~~~~g~il~~~~~-~~----~-----~~~~~~~~~i~~~i~~~~~~------~~~~i~g   92 (373)
T 2q2r_A           29 PLTFVGDVGGTSARMGFVREGKNDSVHACVTRYS-MK----R-----KDITEIIEFFNEIIELMPAS------VMKRVKA   92 (373)
T ss_dssp             CEEEEEEECSSEEEEEEEEECGGGCEEEEEEEEE-CT----T-----CBGGGHHHHHHHHHHHSCHH------HHTTEEE
T ss_pred             CeEEEEEEccccEEEEEEecccCCCccEEEEeee-cC----C-----CCHHHHHHHHHHHHHHHhhc------ccccccE
Confidence            367789999999999999951   5888876541 11    1     35677787777777765432      1356888


Q ss_pred             EEEcCCcceeEEeeCCCCCccccccccCC
Q psy9709         101 LGITNQRETTVVWDLNTGEPLYNAIDKMP  129 (500)
Q Consensus       101 Igis~~~~~~v~~d~~~g~pl~p~i~w~d  129 (500)
                      |||+..+    ++|.  |....|...|.+
T Consensus        93 igi~~pG----~vd~--g~v~~~~~~~~~  115 (373)
T 2q2r_A           93 GVINVPG----PVTG--GAVGGPFNNLKG  115 (373)
T ss_dssp             EEEEESS----CEET--TTEECCCSSSBS
T ss_pred             EEEEeec----cccC--CEEeccCCCCCC
Confidence            9888776    5676  555545444654

>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*

Probab=96.42  E-value=0.008  Score=59.19  Aligned_cols=80  Identities=13%  Similarity=0.038  Sum_probs=50.6

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      .+.+++|||+|.|++|++++|.++|+++...+.++..           .+.    +.+.+++++++   .+   .+|.+|
T Consensus        12 ~~~~~lgiDiGGT~i~~~l~dl~~g~i~~~~~~~~~~-----------~~~----~~~~i~~~~~~---~~---~~i~gi   70 (332)
T 1sz2_A           12 STKYALVGDVGGTNARLALCDIASGEISQAKTYSGLD-----------YPS----LEAVIRVYLEE---HK---VEVKDG   70 (332)
T ss_dssp             --CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG-----------CSC----HHHHHHHHHHH---SC---CCCCEE
T ss_pred             CCCEEEEEEechhheEEEEEECCCCcEEEEEEecCCC-----------cCC----HHHHHHHHHHh---cC---CCccEE
Confidence            3568999999999999999995348888655444321           011    23344444443   12   357888


Q ss_pred             EEcCCCceeEEEeCCCCcccccceeec
Q psy9709         231 GITNQRETTVVWDLNTGEPLYNAIVWS  257 (500)
Q Consensus       231 ~vs~~~~~~v~~d~~~G~~l~~~i~w~  257 (500)
                      +|+.++    ++|.  +....+.+.|.
T Consensus        71 gi~~pG----~vd~--~~~~~~nl~w~   91 (332)
T 1sz2_A           71 CIAIAC----PITG--DWVAMTNHTWA   91 (332)
T ss_dssp             EEEESS----CCCS--SEECCSSSCCC
T ss_pred             EEEEeC----ceeC--CEEeeeCCCCc
Confidence            988887    6774  45445566685

>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}

Probab=96.35  E-value=0.0043  Score=62.22  Aligned_cols=84  Identities=14%  Similarity=0.064  Sum_probs=57.9

Q ss_pred             CCEEEEEeccCCCceEEEEeC----CCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy9709         152 VPLIGVIDEGTRTVRFAIISA----LTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI  227 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~----~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I  227 (500)
                      ..+++|||+|.|++|++++|.    + |+++...+. ++    .     .+++++.+.+.+.++++....      +.+|
T Consensus        28 ~~~~lgiDiGgt~i~~~l~d~~~~~~-g~il~~~~~-~~----~-----~~~~~~~~~i~~~i~~~~~~~------~~~i   90 (373)
T 2q2r_A           28 APLTFVGDVGGTSARMGFVREGKNDS-VHACVTRYS-MK----R-----KDITEIIEFFNEIIELMPASV------MKRV   90 (373)
T ss_dssp             SCEEEEEEECSSEEEEEEEEECGGGC-EEEEEEEEE-CT----T-----CBGGGHHHHHHHHHHHSCHHH------HTTE
T ss_pred             CCeEEEEEEccccEEEEEEecccCCC-ccEEEEeee-cC----C-----CCHHHHHHHHHHHHHHHhhcc------cccc
Confidence            458999999999999999997    5 988876541 11    1     256677777777776654321      2468


Q ss_pred             eEEEEcCCCceeEEEeCCCCcccccceeecc
Q psy9709         228 VTLGITNQRETTVVWDLNTGEPLYNAIVWSD  258 (500)
Q Consensus       228 ~~I~vs~~~~~~v~~d~~~G~~l~~~i~w~D  258 (500)
                      .+|+++.++    ++|.  |....|...|.+
T Consensus        91 ~gigi~~pG----~vd~--g~v~~~~~~~~~  115 (373)
T 2q2r_A           91 KAGVINVPG----PVTG--GAVGGPFNNLKG  115 (373)
T ss_dssp             EEEEEEESS----CEET--TTEECCCSSSBS
T ss_pred             cEEEEEeec----cccC--CEEeccCCCCCC
Confidence            899998887    7776  565544334554

>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A

Probab=96.24  E-value=0.013  Score=60.23  Aligned_cols=77  Identities=6%  Similarity=-0.049  Sum_probs=51.3

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeE---EEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEE---VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT  229 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~v---i~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~  229 (500)
                      ..+++||+|+|++|++++|.+ |+.   +...+.++|.    +- ..-+.+++++.+.+++++++++.. .......+.|
T Consensus        61 G~~laiDlGGTnirv~lV~~~-G~~~~~~~~~~~~ip~----~~-~~~~~~~lfd~Ia~~i~~~~~~~~-~~~~~~~~lG  133 (457)
T 2yhx_A           61 GSFLAIVMGGGDLEVILISLA-GRQESSIXASRSLAAA----MS-TTAIPSDLWGNXAXSNAAFSSXEF-SSXAGSVPLG  133 (457)
T ss_dssp             EEEEEEEECSSEEEEEEEEEE-TTEEEEEEEEEECCTT----TT-SCSCTHHHHHHHHHHHHHHHHHHT-SSCSSCEEEE
T ss_pred             ceEEEEEeCCCeEEEEEEEeC-CCeeEEEeeEEEEcCC----cc-CCCCHHHHHHHHHHHHHHHHhhcc-ccccccccee
Confidence            356999999999999999985 877   4444333331    10 122678999999999999887521 0111122568


Q ss_pred             EEEcCCC
Q psy9709         230 LGITNQR  236 (500)
Q Consensus       230 I~vs~~~  236 (500)
                      |+++.++
T Consensus       134 i~fs~P~  140 (457)
T 2yhx_A          134 FTFXEAG  140 (457)
T ss_dssp             EECCSCC
T ss_pred             eEEEEEE
Confidence            8888776

>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}

Probab=96.12  E-value=0.017  Score=57.16  Aligned_cols=151  Identities=16%  Similarity=0.116  Sum_probs=77.7

Q ss_pred             EEEEEecCCCcceEEEEeCC-CCcEEEEEEeeeeeecCCCCcc---ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709          25 LIGVIDEGTRTVRFAIISAL-TQEEVVSHSMDISTISPQEGWA---EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT  100 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~-~g~~l~~~~~~~~~~~~~~g~~---e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~  100 (500)
                      .+++||+||.++|..|++.. +|.+....+.... ..-..|-.   ..++ +-.+..++++++..+.+++.+  .++|.+
T Consensus        17 ~~A~IDiGSNsiRL~I~~~~~~~~~~~i~~~k~~-vrLg~g~~~~g~ls~-eai~r~~~aL~~f~~~~~~~~--v~~v~~   92 (343)
T 3cer_A           17 TVAGIDCGTNSIRLKIARVDADGMHEVVPRILRV-IRLGQDVDKTHRFAD-EALERAYVAAREFAGVIAEHP--IDGLRF   92 (343)
T ss_dssp             EEEEEEECSSCEEEEEEEEETTEEEEEEEEEEEC-CCTTTTHHHHSSCCH-HHHHHHHHHHHHHHHHHTTSC--CSEEEE
T ss_pred             eEEEEEcccceeEeEEEEEcCCCCEEEEEEEEEE-eeCCCCccccCCcCH-HHHHHHHHHHHHHHHHHHHCC--CCeEEE
Confidence            57889999999999999962 2322222222222 12223321   1233 455566677777666553343  467999


Q ss_pred             EEEcCCcceeEEeeCCCCCccccccc--------cCCccccCCCCCCCCCCCCcccc-ccCCEEEEEeccCCCceEEEEe
Q psy9709         101 LGITNQRETTVVWDLNTGEPLYNAID--------KMPSLVYNTPPEPSSNTNNNSIQ-TQVPLIGVIDEGTRTVRFAIIS  171 (500)
Q Consensus       101 Igis~~~~~~v~~d~~~g~pl~p~i~--------w~d~~~~~~t~~~~~~~~n~~~~-~~~~~~lgIDiGTts~k~~l~d  171 (500)
                      ++-++.|      |+.|++-+-.-+-        +.+..-..+..|. .. .+..-. ....-.+.+|||+.|+-.++++
T Consensus        93 vATsA~R------~A~N~~~fl~~v~~~tGi~ieVIsG~eEA~l~~~-gv-~~~~~~~~~~~~~lviDIGGGStel~~~~  164 (343)
T 3cer_A           93 VATSATR------DAENREEFEDEIERILGVRPEVIPGTEEADLSFL-GA-TSVVNRDDLPAPYLVVDLGGGSTELVIGG  164 (343)
T ss_dssp             EECHHHH------HCTTHHHHHHHHHHHHSSCCEECCHHHHHHHHHH-HH-HSSCCTTTCCSSEEEEEECSSCEEEEECC
T ss_pred             EecHHHH------cCcCHHHHHHHHHHHHCCCEEEeCHHHHHHHHHH-HH-HhhCccccccCCEEEEEeCCCceEEEEee
Confidence            9999988      4434443322221        1111100000111 00 000000 0112267799999999999987


Q ss_pred             C--CC--CeEEEEeeeeccc
Q psy9709         172 A--LT--QEEVVSHSMDIST  187 (500)
Q Consensus       172 ~--~~--G~vi~~~~~~~~~  187 (500)
                      .  ..  ++++...+.++..
T Consensus       165 ~~~~~~~~~~~~~~SlplG~  184 (343)
T 3cer_A          165 DGVSAPTTQVQGAFSMNIGS  184 (343)
T ss_dssp             CSSSSCTTSCSEEEEESCCH
T ss_pred             cCccCcccccceeEEEehhH
Confidence            4  21  3344555666543

>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*

Probab=96.11  E-value=0.019  Score=59.22  Aligned_cols=59  Identities=7%  Similarity=0.150  Sum_probs=40.0

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcE-EEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEE-VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~-l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      .+++||+|+||+|+++++. +|+- ....+..++.  |.. ...-+.+++++.+.+++++.+++
T Consensus        81 ~~LalDlGGTn~Rv~~V~l-~g~~~~~~~~~~~~I--p~~-~~~~~~~~lfd~Ia~~i~~fl~~  140 (485)
T 3o8m_A           81 DFLALDLGGTNLRVVLVKL-GGNHDFDTTQNKYRL--PDH-LRTGTSEQLWSFIAKCLKEFVDE  140 (485)
T ss_dssp             EEEEEEESSSEEEEEEEEE-ESSSCEEEEEEEEEC--CTT-GGGSBHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCeEEEEEEEE-CCCCceEEEEEEEec--Cch-hccCCHHHHHHHHHHHHHHHHHH
Confidence            4566999999999999998 7752 1111222321  111 12224789999999999999877

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=96.10  E-value=0.015  Score=61.61  Aligned_cols=92  Identities=16%  Similarity=0.213  Sum_probs=61.3

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCC------ccc---cCHHHHHHHHHHHHHHHHHHHH-hCCC
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEG------WAE---QDPMEILQAVQTTMDRAIEKLS-AHGL   93 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g------~~e---~d~~~~~~~~~~~i~~~~~~~~-~~~~   93 (500)
                      .|=++||||||++.+.++|..+|+++++.+...+.......      ++.   ...+++-+++.+.+.++++++- +.++
T Consensus       206 ~~GlAvDiGTTtv~~~LvdL~tG~~l~~~~~~NpQ~~~G~DVisRI~~a~~~~~g~~~L~~~v~~~in~li~~l~~~~~i  285 (631)
T 3zyy_X          206 VFGLAIDIGTTTVVVQLVDLVSGKVLGTKGNYNKQAAFGDDVISRIIYVDENPDGAEKLRKAVLSTINELIFQLCKEHGV  285 (631)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTCCEEEEEEEECGGGGTCSSHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ceEEEEEecccceeEEEEECCCCCEEEeecccCCCCCcchHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            46677999999999999998799999998877664332221      332   2234566666666666665543 2688


Q ss_pred             CCCCeeEEEEcC---CcceeEEeeC
Q psy9709          94 SRDDIVTLGITN---QRETTVVWDL  115 (500)
Q Consensus        94 ~~~~i~~Igis~---~~~~~v~~d~  115 (500)
                      ++++|..+.|.+   |.|=++-+|.
T Consensus       286 ~~~~I~~~~v~GNt~M~hLllgi~p  310 (631)
T 3zyy_X          286 EKKEIMAAVVAGNTTMTHLFLEIDP  310 (631)
T ss_dssp             CGGGEEEEEEEECHHHHHHHHTCCC
T ss_pred             CHHHeeEEEEEccHHHHHHHcCCCh
Confidence            888888877764   3333344444

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=96.05  E-value=0.015  Score=55.50  Aligned_cols=65  Identities=18%  Similarity=0.235  Sum_probs=41.7

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      |++|||+|||++|++++|.. ++++.....+..       .   .++.    ....++++.++   .+....++..++++
T Consensus         2 ~~lGID~GsT~tk~av~d~~-~~il~~~~~~~g-------~---~~e~----a~~vl~~~~~~---a~~~~~~~~~~a~t   63 (276)
T 4ehu_A            2 YTMGLDIGSTASKGVILKNG-EDIVASETISSG-------T---GTTG----PSRVLEKLYGK---TGLAREDIKKVVVT   63 (276)
T ss_dssp             EEEEEEECSSCEEEEEEETT-TEEEEEEEESCC-------T---TSSH----HHHHHHHHHHH---HCCCGGGEEEEEEE
T ss_pred             eEEEEEcCccEEEEEEEECC-CeEEEEEEecCC-------C---CHHH----HHHHHHHHHHH---CCCcchhccccccC
Confidence            68999999999999999964 888865433221       1   1111    22345555554   35566778777776


Q ss_pred             CCC
Q psy9709         234 NQR  236 (500)
Q Consensus       234 ~~~  236 (500)
                      +.+
T Consensus        64 ~~~   66 (276)
T 4ehu_A           64 GYG   66 (276)
T ss_dssp             STT
T ss_pred             chH
Confidence            543

>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*

Probab=96.03  E-value=0.026  Score=58.97  Aligned_cols=153  Identities=11%  Similarity=0.076  Sum_probs=80.8

Q ss_pred             ccCcEEEEEecCCCcceEEEEeCCCC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy9709          21 TQVPLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI   98 (500)
Q Consensus        21 m~~~~i~giDiGtt~~k~~v~d~~~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i   98 (500)
                      |....+++||+||.++|..|++..+|  +++...+.....-..-...-..++ +-.+..++++++..+.++  ....++|
T Consensus         8 ~~~~~~AaIDiGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~-eai~r~~~~L~~f~~~~~--~~~v~~v   84 (513)
T 1u6z_A            8 PRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSE-EAMTRGLNCLSLFAERLQ--GFSPASV   84 (513)
T ss_dssp             ----CEEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCCBCH-HHHHHHHHHHHHHHHHTT--TCCGGGE
T ss_pred             ccCCeEEEEEeccccEEEEEEEEcCCeeEEEEeeEEEEeccCcccccCCcCH-HHHHHHHHHHHHHHHHHH--hCCCCEE
Confidence            33345788999999999999997333  233333333321111010112333 455566677777766542  3345689


Q ss_pred             eEEEEcCCcceeEEeeCCCCCccccccc--------cCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEE
Q psy9709          99 VTLGITNQRETTVVWDLNTGEPLYNAID--------KMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAII  170 (500)
Q Consensus        99 ~~Igis~~~~~~v~~d~~~g~pl~p~i~--------w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~  170 (500)
                      .+++-++.|      |+.|+.-+-.-+-        +.+..-..+..|. .. .+ ...... -.+.+|||+.|+-.+++
T Consensus        85 ~~vATsA~R------~A~N~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~-gv-~~-~~~~~~-~~lviDIGGGStEl~~~  154 (513)
T 1u6z_A           85 CIVGTHTLR------QALNATDFLKRAEKVIPYPIEIISGNEEARLIFM-GV-EH-TQPEKG-RKLVIDIGGGSTELVIG  154 (513)
T ss_dssp             EEEECHHHH------HCTTHHHHHHHHTTTCSSCEEECCHHHHHHHHHH-HH-HH-HSCCCS-CEEEEEECSSCEEEEEE
T ss_pred             EEEecHHHH------cCcCHHHHHHHHHHHHCCCEEEeCHHHHHHHHHH-HH-Hh-hccCCC-CEEEEEECCCcEEEEEE
Confidence            999999888      4433432221111        1100000000111 00 00 011111 36789999999999999


Q ss_pred             eCCCCeEEEEeeeecccc
Q psy9709         171 SALTQEEVVSHSMDISTI  188 (500)
Q Consensus       171 d~~~G~vi~~~~~~~~~~  188 (500)
                      +.  +++....+.+...+
T Consensus       155 ~~--~~~~~~~Sl~lG~v  170 (513)
T 1u6z_A          155 EN--FEPILVESRRMGCV  170 (513)
T ss_dssp             ET--TEEEEEEEESCCHH
T ss_pred             eC--CeeeEEEEEeccHH
Confidence            83  78887777776644

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=95.99  E-value=0.011  Score=62.57  Aligned_cols=84  Identities=17%  Similarity=0.255  Sum_probs=60.4

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCC------eEEEC---hHHHHHHHHHHHHHHHHHHH-hCC
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEG------WAEQD---PMEILQAVQTTMDRAIEKLS-AHG  221 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g------~~~~d---~~~~~~~i~~~l~~~~~~~~-~~~  221 (500)
                      ..|-++||+|||++.+.++|..+|++++..+..+|+.....+      ++.++   .+++-+.+.+.+.++++++. +.+
T Consensus       205 ~~~GlAvDiGTTtv~~~LvdL~tG~~l~~~~~~NpQ~~~G~DVisRI~~a~~~~~g~~~L~~~v~~~in~li~~l~~~~~  284 (631)
T 3zyy_X          205 RVFGLAIDIGTTTVVVQLVDLVSGKVLGTKGNYNKQAAFGDDVISRIIYVDENPDGAEKLRKAVLSTINELIFQLCKEHG  284 (631)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTTCCEEEEEEEECGGGGTCSSHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEEecccceeEEEEECCCCCEEEeecccCCCCCcchHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            457899999999999999999899999999888887543222      11112   23455556666666666543 458


Q ss_pred             CCCCCeeEEEEcCC
Q psy9709         222 LSRDDIVTLGITNQ  235 (500)
Q Consensus       222 ~~~~~I~~I~vs~~  235 (500)
                      +++++|..+.+.+.
T Consensus       285 i~~~~I~~~~v~GN  298 (631)
T 3zyy_X          285 VEKKEIMAAVVAGN  298 (631)
T ss_dssp             CCGGGEEEEEEEEC
T ss_pred             CCHHHeeEEEEEcc
Confidence            88999988888764

>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*

Probab=95.94  E-value=0.017  Score=64.70  Aligned_cols=75  Identities=13%  Similarity=0.158  Sum_probs=48.9

Q ss_pred             EEEEEecCCCcceEEEEeCCC-Cc--EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALT-QE--EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~-g~--~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      .++|||+|+||+|+++++. + |+  ++...+..+..-.+   -...+.+++++.+.+++++.+++   .++..+.+ .|
T Consensus       527 ~~lalDlGGTn~Rv~~V~l-~~g~~~~~~~~~~~~~ip~~---~~~~~~~~lfd~Ia~~i~~~l~~---~~~~~~~l-~l  598 (917)
T 1cza_N          527 DFLALDLGGTNFRVLLVKI-RSGKKRTVEMHNKIYAIPIE---IMQGTGEELFDHIVSCISDFLDY---MGIKGPRM-PL  598 (917)
T ss_dssp             EEEEEEESSSSEEEEEEEE-ECSTTCEEEEEEEEECCCHH---HHTSBHHHHHHHHHHHHHHHHHH---HTCCSSCC-EE
T ss_pred             EEEEEEECCCcEEEEEEEe-CCCcceeEEeeeeEEecCcc---cccCCHHHHHHHHHHHHHHHHHH---cCCCccce-eE
Confidence            4566999999999999997 5 54  66444443332110   01235789999999999999876   44444444 55


Q ss_pred             EEcCCc
Q psy9709         102 GITNQR  107 (500)
Q Consensus       102 gis~~~  107 (500)
                      |++.-.
T Consensus       599 G~tfsf  604 (917)
T 1cza_N          599 GFTFSF  604 (917)
T ss_dssp             EEEECS
T ss_pred             EEEeec
Confidence            555433

>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5

Probab=95.85  E-value=0.001  Score=64.41  Aligned_cols=67  Identities=12%  Similarity=0.121  Sum_probs=34.8

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      +++|||+|+|++|++++| + |+++...+.+...  +.    ..+++++++.+.+++++++.        ..++.+|+++
T Consensus         1 ~~lgiDiGGT~i~~~l~d-~-g~il~~~~~~~~~--~~----~~~~~~~~~~i~~~i~~~~~--------~~~i~~igig   64 (291)
T 1zxo_A            1 MILIADSGSTKTDWCVVL-N-GAVIKRLGTKGIN--PF----FQSEEEIQQKLTASLLPQLP--------EGKFNAVYFY   64 (291)
T ss_dssp             ---CEECCTTCEEEEEEC-S-SSEEEEEEECCCC--TT----TSCSTTTTTTTTC---------------------CEEE
T ss_pred             CEEEEEeccccEEEEEEc-C-CeEEEEEECCCCC--cc----cCCHHHHHHHHHHHHHHhcC--------cccccEEEEE
Confidence            368999999999999999 6 9999876553311  10    01234455555555554432        2357778888


Q ss_pred             CCC
Q psy9709         234 NQR  236 (500)
Q Consensus       234 ~~~  236 (500)
                      .++
T Consensus        65 ~pG   67 (291)
T 1zxo_A           65 GAG   67 (291)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            776

>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*

Probab=95.80  E-value=0.048  Score=53.16  Aligned_cols=149  Identities=11%  Similarity=0.121  Sum_probs=79.8

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcE--EEEEEeeeeeecCCCCccc---cCHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEE--VVSHSMDISTISPQEGWAE---QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   99 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~--l~~~~~~~~~~~~~~g~~e---~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~   99 (500)
                      .+++||+||.++|..|++..++.+  +...+...   ....|-.+   .++ +-.+..++++++..+.+++.++  ++|.
T Consensus        13 ~~a~IDiGSns~rl~I~~~~~~~~~~i~~~k~~v---rLg~g~~~~g~ls~-eai~r~~~~L~~f~~~~~~~~v--~~i~   86 (315)
T 1t6c_A           13 RVASIDIGSYSVRLTIAQIKDGKLSIILERGRIT---SLGTKVKETGRLQE-DRIEETIQVLKEYKKLIDEFKV--ERVK   86 (315)
T ss_dssp             EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEEC---CTTTTHHHHSSCCH-HHHHHHHHHHHHHHHHHHHTTC--SEEE
T ss_pred             EEEEEEECcCcEEEEEEEEcCCcEEEEeeeeEEe---ecCCCccccCCcCH-HHHHHHHHHHHHHHHHHHHCCC--CeEE
Confidence            467799999999999999733422  33333222   22233211   223 3444556666666555443543  5799


Q ss_pred             EEEEcCCcceeEEeeCCCCCccccccc-cCCcccc----CCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCC
Q psy9709         100 TLGITNQRETTVVWDLNTGEPLYNAID-KMPSLVY----NTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALT  174 (500)
Q Consensus       100 ~Igis~~~~~~v~~d~~~g~pl~p~i~-w~d~~~~----~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~  174 (500)
                      +++-++.+      ++.+++-+-..+- -..-.+.    ++.+++.-........ ...-.+.+|||+.|+-.++++ + 
T Consensus        87 ~vATsA~R------~A~N~~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~-~~~~~lvvDIGGGStEl~~~~-~-  157 (315)
T 1t6c_A           87 AVATEAIR------RAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLK-PEGEVCVVDQGGGSTEYVFGK-G-  157 (315)
T ss_dssp             EEECHHHH------TSTTHHHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTC-CCSEEEEEEEETTEEEEEEEE-T-
T ss_pred             EEEcHHHH------cCcCHHHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcc-cCCCEEEEEeCCCcEEEEEEe-C-
Confidence            99999888      3434443322221 0000000    0001110000000011 123367899999999999998 3 


Q ss_pred             CeEEEEeeeecccc
Q psy9709         175 QEEVVSHSMDISTI  188 (500)
Q Consensus       175 G~vi~~~~~~~~~~  188 (500)
                      ++++...+.++..+
T Consensus       158 ~~~~~~~Sl~~G~v  171 (315)
T 1t6c_A          158 YKVREVISLPIGIV  171 (315)
T ss_dssp             TEEEEEEEECCCHH
T ss_pred             CceeeEEEEeccHH
Confidence            78877777776643

>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}

Probab=95.74  E-value=0.024  Score=53.91  Aligned_cols=64  Identities=20%  Similarity=0.249  Sum_probs=45.2

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      +++||+|.|++|.++||.  ++++...+.+++        .....+++...+    +++++.   .+++..+|.+|.||+
T Consensus         2 lL~IDIGNT~ik~gl~~~--~~l~~~~r~~T~--------~~~t~de~~~~l----~~ll~~---~~~~~~~i~~iiISS   64 (268)
T 2h3g_X            2 IFVLDVGNTNAVLGVFEE--GELRQHWRMETD--------RHKTEDEYGMLV----KQLLEH---EGLSFEDVKGIIVSS   64 (268)
T ss_dssp             EEEEEECSSEEEEEEEET--TEEEEEEEEECC--------TTCCHHHHHHHH----HHHHHH---TTCCGGGCCEEEEEE
T ss_pred             EEEEEECcCcEEEEEEEC--CEEEEEEEecCC--------CcCCHHHHHHHH----HHHHHH---cCCCcccCcEEEEEc
Confidence            456999999999999994  678877776654        223455665444    455554   666677889999986


Q ss_pred             C
Q psy9709         106 Q  106 (500)
Q Consensus       106 ~  106 (500)
                      -
T Consensus        65 V   65 (268)
T 2h3g_X           65 V   65 (268)
T ss_dssp             S
T ss_pred             c
Confidence            4

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=95.70  E-value=0.039  Score=56.07  Aligned_cols=79  Identities=16%  Similarity=0.224  Sum_probs=54.0

Q ss_pred             cCcEEEEEecCCCcceEEEEeCC-CC-cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709          22 QVPLIGVIDEGTRTVRFAIISAL-TQ-EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   99 (500)
Q Consensus        22 ~~~~i~giDiGtt~~k~~v~d~~-~g-~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~   99 (500)
                      ++.+++|||||||++|+++.... +| ++++....+.....  .| .-.|.+..-+++.++++++-+.   +++...+=+
T Consensus         6 ~~~~ivglDIGts~I~~vv~~~~~~~~~i~g~~~~~s~gv~--~G-~I~di~~~~~~I~~av~~ae~~---~g~~i~~~v   79 (419)
T 4a2a_A            6 KTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLD--EG-EIKDAIAFKESVNTLLKELEEQ---LQKSLRSDF   79 (419)
T ss_dssp             -CCEEEEEEECSSEEEEEEEEC----CEEEEEEEEECCSEE--TT-EESBHHHHHHHHHHHHHHHHHH---HTSCCCSEE
T ss_pred             cCCEEEEEEccCCEEEEEEEEEcCCCCEEEEEEEeccCCee--CC-EEEcHHHHHHHHHHHHHHHHHH---cCCCcCceE
Confidence            45678889999999999999752 23 78877766533221  22 4568998888888888887655   555544426


Q ss_pred             EEEEcCC
Q psy9709         100 TLGITNQ  106 (500)
Q Consensus       100 ~Igis~~  106 (500)
                      .+|+++.
T Consensus        80 ~v~i~g~   86 (419)
T 4a2a_A           80 VISFSSV   86 (419)
T ss_dssp             EEEECCT
T ss_pred             EEEEcCC
Confidence            7788876

>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A

Probab=95.68  E-value=0.013  Score=55.16  Aligned_cols=62  Identities=13%  Similarity=0.210  Sum_probs=43.5

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      +++||+|.|++|.++||.  ++++...+.+++        .....+++...+.+.++.          ...+|.+|.||+
T Consensus         5 ~L~IDIGNT~ik~gl~~~--~~l~~~~r~~T~--------~~~t~de~~~~l~~l~~~----------~~~~i~~i~IsS   64 (249)
T 3bex_A            5 YLLVDVGNTHSVFSITED--GKTFRRWRLSTG--------VFQTEDELFSHLHPLLGD----------AMREIKGIGVAS   64 (249)
T ss_dssp             EEEEEECSSEEEEEEESS--SSSCEEEEEECC--------TTCCHHHHHHHHHHHHGG----------GGGGEEEEEEEE
T ss_pred             EEEEEECCCeEEEEEEEC--CEEEEEEEecCC--------CCCCHHHHHHHHHHHHhh----------ccccCCEEEEEc
Confidence            466999999999999984  678877776654        234567776665554432          135688999986


Q ss_pred             Cc
Q psy9709         106 QR  107 (500)
Q Consensus       106 ~~  107 (500)
                      -.
T Consensus        65 Vv   66 (249)
T 3bex_A           65 VV   66 (249)
T ss_dssp             SC
T ss_pred             Cc
Confidence            53

>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3

Probab=95.58  E-value=0.041  Score=56.44  Aligned_cols=74  Identities=15%  Similarity=0.192  Sum_probs=47.5

Q ss_pred             CEEEEEeccCCCceEEEEeCCCC-eE---EEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQ-EE---VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV  228 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G-~v---i~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~  228 (500)
                      ..+++||+|+|++|+++++.. | +-   +...+.+.|... .    ..+.+++++.+.+|+++++++   .+...+. .
T Consensus        68 G~~lalDlGGTn~Rv~~V~l~-G~~~~~~i~~~~~~ip~~~-~----~~~~~~lfd~Ia~~i~~~l~~---~~~~~~~-~  137 (451)
T 1bdg_A           68 GNFLALDLGGTNYRVLSVTLE-GKGKSPRIQERTYCIPAEK-M----SGSGTELFKYIAETLADFLEN---NGMKDKK-F  137 (451)
T ss_dssp             EEEEEEEESSSSEEEEEEEEC-C-CCCCEEEEEEECCCTTT-T----TSBHHHHHHHHHHHHHHHHHH---TTCCSSC-E
T ss_pred             ceEEEEEeCCCeEEEEEEecC-CCCcceEEEEEEEecCCcc-c----CCCHHHHHHHHHHHHHHHHHh---cCCCccc-c
Confidence            457999999999999999985 7 41   112222222110 1    125789999999999999875   3333333 4


Q ss_pred             EEEEcCCC
Q psy9709         229 TLGITNQR  236 (500)
Q Consensus       229 ~I~vs~~~  236 (500)
                      .+|++...
T Consensus       138 ~lG~tfsf  145 (451)
T 1bdg_A          138 DLGFTFSF  145 (451)
T ss_dssp             EEEEEECS
T ss_pred             ceEEEEee
Confidence            55665444

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=95.42  E-value=0.022  Score=54.04  Aligned_cols=65  Identities=15%  Similarity=0.174  Sum_probs=44.3

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      .+|+||+|.|++|.++||.  ++++...+.+++ .        ...+++...    ++.+++.   .+++.++|.+|++|
T Consensus         3 MlL~IDIGNT~iK~gl~d~--~~l~~~~r~~T~-~--------~t~de~~~~----l~~ll~~---~~~~~~~I~~iiIS   64 (266)
T 3djc_A            3 LILCIDVGNSHIYGGVFDG--DEIKLRFRHTSK-V--------STSDELGIF----LKSVLRE---NNCSPETIRKIAIC   64 (266)
T ss_dssp             CEEEEEECSSEEEEEEEET--TEEEEEEEEECS-C--------CCHHHHHHH----HHHHHHT---TTCCGGGCCEEEEE
T ss_pred             eEEEEEECCCeEEEEEEEC--CEEEEEEEecCC-C--------CCHHHHHHH----HHHHHHH---cCCChhhceEEEEe
Confidence            3789999999999999994  788877666554 1        345555433    3444432   34556678899988


Q ss_pred             CCC
Q psy9709         234 NQR  236 (500)
Q Consensus       234 ~~~  236 (500)
                      +..
T Consensus        65 SVv   67 (266)
T 3djc_A           65 SVV   67 (266)
T ss_dssp             ESC
T ss_pred             cch
Confidence            664

>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*

Probab=95.25  E-value=0.0099  Score=59.78  Aligned_cols=81  Identities=16%  Similarity=0.202  Sum_probs=49.0

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHH---HHHHHHHHHHHHhCCCCCCCeeE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAV---QTTMDRAIEKLSAHGLSRDDIVT  229 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i---~~~l~~~~~~~~~~~~~~~~I~~  229 (500)
                      ++++|||+|+|++|++++|.  ++++...+.+++....      .+++++.+.+   .+.+.+++++   .++...+|.+
T Consensus         2 ~~vlgidiGgt~ik~al~d~--~~il~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~l~~---~~~~~~~i~g   70 (381)
T 1saz_A            2 FRILTINPGSTSTKLSIFED--ERMVKMQNFSHSPDEL------GRFQKILDQLEFREKIARQFVEE---TGYSLSSFSA   70 (381)
T ss_dssp             CEEEEEEECSSEEEEEEEET--TEEEEEEEEECCHHHH------HTCSSGGGGHHHHHHHHHHHHHT---TTCCGGGCSE
T ss_pred             CeEEEEECCccceeEEEEec--chheeeeecccCcccc------cchhhHHHHHHHHHHHHHHHHHH---cCCCccCceE
Confidence            37899999999999999995  4888777666542100      0111223333   4455555432   3444457888


Q ss_pred             EEEcCCCceeEEEeCCCCcc
Q psy9709         230 LGITNQRETTVVWDLNTGEP  249 (500)
Q Consensus       230 I~vs~~~~~~v~~d~~~G~~  249 (500)
                      | ++.++    ++|..+|..
T Consensus        71 I-i~~pG----~vd~~~G~~   85 (381)
T 1saz_A           71 F-VSRGG----LLDPIPGGV   85 (381)
T ss_dssp             E-EEECC----SCSCBCSSE
T ss_pred             E-EecCC----CCCCCCCce
Confidence            8 77666    566534554

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=94.47  E-value=0.071  Score=50.47  Aligned_cols=60  Identities=17%  Similarity=0.133  Sum_probs=39.3

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHH
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI  214 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~  214 (500)
                      .+++++|||+||+++|++++|.+ ++++.....+...+  ++| ...|.+...+.+..+++.+.
T Consensus        26 ~~~~~~gIDiGS~s~k~vi~~~~-~~~l~~~~~~~~~l--~~g-~i~d~~~~~~~l~~~~~~~~   85 (272)
T 3h1q_A           26 PPPYKVGVDLGTADIVLVVTDQE-GIPVAGALKWASVV--KDG-LVVDYIGAIQIVRELKAKVE   85 (272)
T ss_dssp             CSCCEEEEECCSSEEEEEEECTT-CCEEEEEEEECCCC--BTT-BCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcccceEEEEEECCC-CcEEEEEeeccccc--CCC-EEEcHHHHHHHHHHHHHHHH
Confidence            34689999999999999999975 88887765554322  223 24455555555555544443

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=93.80  E-value=0.27  Score=49.82  Aligned_cols=79  Identities=16%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCC-C-eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALT-Q-EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV  228 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~-G-~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~  228 (500)
                      .+++++||||||+++|+++..... | ++++....+..-  -..| ...|.+..-+++.++++++-+.   .+.....-.
T Consensus         6 ~~~~ivglDIGts~I~~vv~~~~~~~~~i~g~~~~~s~g--v~~G-~I~di~~~~~~I~~av~~ae~~---~g~~i~~~v   79 (419)
T 4a2a_A            6 KTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRG--LDEG-EIKDAIAFKESVNTLLKELEEQ---LQKSLRSDF   79 (419)
T ss_dssp             -CCEEEEEEECSSEEEEEEEEC----CEEEEEEEEECCS--EETT-EESBHHHHHHHHHHHHHHHHHH---HTSCCCSEE
T ss_pred             cCCEEEEEEccCCEEEEEEEEEcCCCCEEEEEEEeccCC--eeCC-EEEcHHHHHHHHHHHHHHHHHH---cCCCcCceE
Confidence            467899999999999999997532 3 677766554321  1233 3678888877777777776443   244444413


Q ss_pred             EEEEcCC
Q psy9709         229 TLGITNQ  235 (500)
Q Consensus       229 ~I~vs~~  235 (500)
                      .+++++.
T Consensus        80 ~v~i~g~   86 (419)
T 4a2a_A           80 VISFSSV   86 (419)
T ss_dssp             EEEECCT
T ss_pred             EEEEcCC
Confidence            5666655

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=93.69  E-value=0.16  Score=49.73  Aligned_cols=74  Identities=16%  Similarity=0.260  Sum_probs=51.2

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCcc-ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~-e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      +++|||.++..++++|++.  |++++.......  .+..|+. +.....-.+.+..++++++++   ++++.++|.+|++
T Consensus         2 ~iLgIdts~~~~~val~~~--g~i~~~~~~~~~--~~~gg~~p~~~~~~h~~~l~~~i~~~L~~---agi~~~did~Ia~   74 (330)
T 2ivn_A            2 LALGIEGTAHTLGIGIVSE--DKVLANVFDTLT--TEKGGIHPKEAAEHHARLMKPLLRKALSE---AGVSLDDIDVIAF   74 (330)
T ss_dssp             CEEEEECSSSEEEEEEECS--SCEEEEEEEECC--CTTCCCCHHHHHHHHHHHHHHHHHHHHHH---HTCCTTTCCEEEE
T ss_pred             EEEEEEccCCCeEEEEEEC--CEEEEEEEEEee--cccCCcCchhhHHHHHHHHHHHHHHHHHH---cCCCHHHCcEEEE
Confidence            4778999999999999984  688865543332  2222432 112334555667788888877   8899999999988


Q ss_pred             cC
Q psy9709         104 TN  105 (500)
Q Consensus       104 s~  105 (500)
                      +.
T Consensus        75 ~~   76 (330)
T 2ivn_A           75 SQ   76 (330)
T ss_dssp             EE
T ss_pred             EC
Confidence            63

>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*

Probab=93.47  E-value=0.2  Score=51.51  Aligned_cols=60  Identities=7%  Similarity=0.120  Sum_probs=39.7

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeE-EEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEE-VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK  216 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~v-i~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~  216 (500)
                      -.+++||+|+|++|+++++.. |+- .......++.  |.. ...-+.+++++.+.+|+++.+++
T Consensus        80 G~~LalDlGGTn~Rv~~V~l~-g~~~~~~~~~~~~I--p~~-~~~~~~~~lfd~Ia~~i~~fl~~  140 (485)
T 3o8m_A           80 GDFLALDLGGTNLRVVLVKLG-GNHDFDTTQNKYRL--PDH-LRTGTSEQLWSFIAKCLKEFVDE  140 (485)
T ss_dssp             EEEEEEEESSSEEEEEEEEEE-SSSCEEEEEEEEEC--CTT-GGGSBHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEecCCeEEEEEEEEC-CCCceEEEEEEEec--Cch-hccCCHHHHHHHHHHHHHHHHHH
Confidence            367999999999999999985 641 1111222221  111 01113689999999999999876

>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}

Probab=93.39  E-value=0.11  Score=53.99  Aligned_cols=145  Identities=12%  Similarity=0.078  Sum_probs=78.8

Q ss_pred             EEEEEecCCCcceEEEEeCCCC--cEEEEEEeeeeeecCCCCcc---ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWA---EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   99 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g--~~l~~~~~~~~~~~~~~g~~---e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~   99 (500)
                      .+++||+||.++|..|++..++  +++...+....   -..|-.   .-+++ -.+..+++++...+.++..++  ++|.
T Consensus        16 ~~AaIDiGSNS~rL~I~~~~~~~~~~~~~~k~~vr---Lg~gl~~~g~Ls~e-ai~r~~~~L~~F~~~~~~~~v--~~v~   89 (508)
T 3hi0_A           16 PVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCG---LGKGLALTGRMHEE-GVTRALMALRRFHVLSEQAQA--QKLY   89 (508)
T ss_dssp             CEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECC---TTTTHHHHSSCCHH-HHHHHHHHHHHHHHHHHHTTC--SEEE
T ss_pred             eEEEEEECCccEEEEEEEEcCCCceEEEEEeEEee---cccCccccCCcCHH-HHHHHHHHHHHHHHHHHhCCC--CeEE
Confidence            4678999999999999997333  33443332222   222321   12333 444556666665544433554  6799


Q ss_pred             EEEEcCCcceeEEeeCCCCCccccccc--------cCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEe
Q psy9709         100 TLGITNQRETTVVWDLNTGEPLYNAID--------KMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIIS  171 (500)
Q Consensus       100 ~Igis~~~~~~v~~d~~~g~pl~p~i~--------w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d  171 (500)
                      +++-++.+      |+.|+.-+-.-+-        +.+..-..+..|. .. .+ ... ... .+.+|||+.|+-.++++
T Consensus        90 ~vATsA~R------~A~N~~~fl~~i~~~tG~~ievIsG~EEA~l~~~-gv-~~-~~~-~~~-~lvvDIGGGStEl~~~~  158 (508)
T 3hi0_A           90 VLATAAAR------EAENGPDFIREAEAILGCEIEVLSGEKEALYSAY-GV-IS-GFY-QPD-GIAGDLGGGSLELIDIK  158 (508)
T ss_dssp             EEECTHHH------HSTTHHHHHHHHHHHHTSCEEECCHHHHHHHHHH-HH-HH-HSS-SCE-EEEEEECSSCEEEEEEE
T ss_pred             EEeeHHHH------cCcCHHHHHHHHHHHHCCCeEEecHHHHHHHHHH-HH-Hh-cCC-CCC-eEEEEeCCCceEEEEee
Confidence            99999888      4434443322221        1111100000111 00 00 001 112 37899999999999998


Q ss_pred             CCCCeEEEEeeeecccc
Q psy9709         172 ALTQEEVVSHSMDISTI  188 (500)
Q Consensus       172 ~~~G~vi~~~~~~~~~~  188 (500)
                       + +++....+.+...+
T Consensus       159 -~-~~~~~~~Sl~lG~v  173 (508)
T 3hi0_A          159 -D-KSCGEGITLPLGGL  173 (508)
T ss_dssp             -T-TEECCCEEESCCHH
T ss_pred             -C-CeeeeEEEecceEE
Confidence             3 77776666666543

>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}

Probab=93.36  E-value=0.095  Score=49.74  Aligned_cols=64  Identities=20%  Similarity=0.248  Sum_probs=41.8

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  234 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~  234 (500)
                      +|.||+|.|++|.++||.  ++++...+.+++.        .+..+++...+..    +++.   .+++..+|.+|.+|+
T Consensus         2 lL~IDIGNT~ik~gl~~~--~~l~~~~r~~T~~--------~~t~de~~~~l~~----ll~~---~~~~~~~i~~iiISS   64 (268)
T 2h3g_X            2 IFVLDVGNTNAVLGVFEE--GELRQHWRMETDR--------HKTEDEYGMLVKQ----LLEH---EGLSFEDVKGIIVSS   64 (268)
T ss_dssp             EEEEEECSSEEEEEEEET--TEEEEEEEEECCT--------TCCHHHHHHHHHH----HHHH---TTCCGGGCCEEEEEE
T ss_pred             EEEEEECcCcEEEEEEEC--CEEEEEEEecCCC--------cCCHHHHHHHHHH----HHHH---cCCCcccCcEEEEEc
Confidence            578999999999999993  7777766555431        1345566555444    3332   345556788888764


Q ss_pred             C
Q psy9709         235 Q  235 (500)
Q Consensus       235 ~  235 (500)
                      .
T Consensus        65 V   65 (268)
T 2h3g_X           65 V   65 (268)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A

Probab=93.26  E-value=0.058  Score=50.65  Aligned_cols=62  Identities=13%  Similarity=0.216  Sum_probs=41.6

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      .+|+||+|.|++|.++|| + ++++...+.+++.        .+..+++...+...++.          ...+|.+|.++
T Consensus         4 M~L~IDIGNT~ik~gl~~-~-~~l~~~~r~~T~~--------~~t~de~~~~l~~l~~~----------~~~~i~~i~Is   63 (249)
T 3bex_A            4 MYLLVDVGNTHSVFSITE-D-GKTFRRWRLSTGV--------FQTEDELFSHLHPLLGD----------AMREIKGIGVA   63 (249)
T ss_dssp             EEEEEEECSSEEEEEEES-S-SSSCEEEEEECCT--------TCCHHHHHHHHHHHHGG----------GGGGEEEEEEE
T ss_pred             eEEEEEECCCeEEEEEEE-C-CEEEEEEEecCCC--------CCCHHHHHHHHHHHHhh----------ccccCCEEEEE
Confidence            478999999999999998 3 6777666555441        13456766655544432          12468888887


Q ss_pred             CC
Q psy9709         234 NQ  235 (500)
Q Consensus       234 ~~  235 (500)
                      +.
T Consensus        64 SV   65 (249)
T 3bex_A           64 SV   65 (249)
T ss_dssp             ES
T ss_pred             cC
Confidence            54

>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}

Probab=92.84  E-value=0.34  Score=49.18  Aligned_cols=57  Identities=18%  Similarity=0.182  Sum_probs=39.0

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      +++||+|+||.|+++++. .|. +...+..++.  |.. ...-..+++++.+.+++.+.+++
T Consensus        61 ~LAlDlGGTn~RV~~V~l-~g~-~~~~~~~~~i--p~~-~~~g~~~~LFd~Ia~~i~~fl~~  117 (445)
T 3hm8_A           61 FLALDLGGTNFRVLLVRV-TTG-VQITSEIYSI--PET-VAQGSGQQLFDHIVDCIVDFQQK  117 (445)
T ss_dssp             EEEEEESSSSEEEEEEEE-SSS-EEEEEEEECC--CHH-HHTSBHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCeEEEEEEEE-CCc-eEEEEEEecc--Ccc-ccCCCHHHHHHHHHHHHHHHHHH
Confidence            466999999999999998 676 3222333321  110 01124688999999999999876

>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*

Probab=91.19  E-value=0.44  Score=48.72  Aligned_cols=59  Identities=12%  Similarity=0.178  Sum_probs=40.4

Q ss_pred             EEEEEecCCCcceEEEEeCCCCc-----EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQE-----EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~-----~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      .+++||+|+||.|+++++. .|+     .+...+..|+.  |+. -..-..+++|+.+.+++.+.+++
T Consensus        78 ~fLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~~~I--p~~-l~~gt~~eLFd~IA~~i~~fl~~  141 (470)
T 3f9m_A           78 DFLSLDLGGTNFRVMLVKV-GEGEEGQWSVKTKHQMYSI--PED-AMTGTAEMLFDYISECISDFLDK  141 (470)
T ss_dssp             EEEEEEESSSEEEEEEEEE-EC----CEEEEEEEEEEEC--CHH-HHSSBHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCceEEEEEEEE-CCCCCCcceEEEEEEeecC--ChH-hccCCHHHHHHHHHHHHHHHHhh
Confidence            3466999999999999997 553     34333444431  111 11225689999999999999887

>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}

Probab=91.04  E-value=0.42  Score=46.40  Aligned_cols=80  Identities=20%  Similarity=0.249  Sum_probs=45.3

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeE--EEEeeeeccccc--CCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEE--VVSHSMDISTIS--PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD  226 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~v--i~~~~~~~~~~~--~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~  226 (500)
                      |.+.+.+||+||+|+|..+++...+.+  +...+.+...-.  ...|  ..++ +-.+...+|+++..+.+...+  .++
T Consensus         2 m~~~~A~IDiGSNsirL~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g--~ls~-eai~r~~~~L~~f~~~~~~~~--v~~   76 (315)
T 3mdq_A            2 MSQRIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKG--FITE-EAMDRALDTLKKFRVILDEHA--VVH   76 (315)
T ss_dssp             --CEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSSTTTGGGT--CCCH-HHHHHHHHHHHHHHHHHHHTT--CCE
T ss_pred             CCceEEEEEecCCcEEEEEEEEcCCceEEeeeceeeeeccccccccC--CcCH-HHHHHHHHHHHHHHHHHHHcC--CCE
Confidence            344578899999999999999754533  333333332211  1122  2233 344555567776666555444  356


Q ss_pred             eeEEEEcCC
Q psy9709         227 IVTLGITNQ  235 (500)
Q Consensus       227 I~~I~vs~~  235 (500)
                      |.+++.++.
T Consensus        77 v~~vATsA~   85 (315)
T 3mdq_A           77 VIATGTSAV   85 (315)
T ss_dssp             EEEEECHHH
T ss_pred             EEEEeeHHH
Confidence            777775543

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=91.00  E-value=0.38  Score=47.76  Aligned_cols=58  Identities=12%  Similarity=0.040  Sum_probs=37.2

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCCe--EEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHH
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQE--EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR  212 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G~--vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~  212 (500)
                      ++.++|||+||+++|++++. + |+  +......++|...-++| ...|++.+..++.+++++
T Consensus        12 ~~~~vgiDiGt~~i~~~~~~-~-~~~~i~~~g~~~~ps~~~~~g-~i~d~~~~~~~ik~~~~~   71 (377)
T 2ych_A           12 RVEALGLEIGASALKLVEVS-G-NPPALKALASRPTPPGLLMEG-MVAEPAALAQEIKELLLE   71 (377)
T ss_dssp             CCCCEEEEECSSEEEEEEEE-T-TTTEEEEEEEEECCTTSEETT-EESCHHHHHHHHHHHHHH
T ss_pred             CCceEEEEeCCCeEEEEEEe-C-CceEEEEEEeEECCCCcccCC-CcCCHHHHHHHHHHHHHH
Confidence            45678999999999999997 3 54  54455555553222233 356777766666555554

>3sk3_A Acetate kinase, acetokinase; actin-like ATPase domain, askha superfamily of phosphotransf acetokinase, ATP binding, phosphotransferase; HET: CIT; 1.90A {Salmonella enterica subsp} PDB: 3slc_A

Probab=90.41  E-value=0.089  Score=52.73  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=25.8

Q ss_pred             ccCcEEEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709          21 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHS   53 (500)
Q Consensus        21 m~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~   53 (500)
                      |+.++|++|..|+||+|..|||..+++++.+..
T Consensus        16 Ms~klILviN~GSSS~K~~lf~~~~~~~l~~G~   48 (415)
T 3sk3_A           16 MSSKLVLVLNCGSSSLKFAIIDAVNGDEYLSGL   48 (415)
T ss_dssp             --CCEEEEEEECSSCEEEEEEETTTCCEEEEEE
T ss_pred             CCCCeEEEEeCchHhhhheeEECCCCCEEEEee
Confidence            455778899999999999999964677777653

>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}

Probab=90.10  E-value=0.64  Score=45.50  Aligned_cols=75  Identities=19%  Similarity=0.234  Sum_probs=52.2

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCcc-ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~-e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      .+|+|||-.+..+-++|++.  +++++.......  .+..|.+ |.....-.+.+...+++++++   ++++.++|.+|+
T Consensus         6 M~iLgIdts~~~~svAl~~~--~~i~~~~~~~~~--~~~gGv~p~~a~~~H~~~l~~~i~~~L~~---ag~~~~did~Ia   78 (334)
T 3eno_A            6 MIVLGLEGTAHTISCGIIDE--SRILAMESSMYR--PKTGGIRPLDAAVHHSEVIDTVISRALEK---AKISIHDIDLIG   78 (334)
T ss_dssp             CEEEEEECSSSEEEEEEEES--SCCCEEEEEECC--CSSCSCCHHHHHHHHHHHHHHHHHHHHHH---HTCCGGGCCEEE
T ss_pred             ceEEEEECCCcCeEEEEEEC--CEEEEEEEEeec--cccCCcCcchHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEE
Confidence            46888998888899999984  678875443322  1222322 112334556777888888887   889999999999


Q ss_pred             EcC
Q psy9709         103 ITN  105 (500)
Q Consensus       103 is~  105 (500)
                      ++.
T Consensus        79 v~~   81 (334)
T 3eno_A           79 FSM   81 (334)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            885

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=89.70  E-value=0.48  Score=47.00  Aligned_cols=72  Identities=13%  Similarity=0.099  Sum_probs=42.0

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCc--EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQE--EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~--~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      ..++|||+|||++|+++++.  |+  +......+++...-..| .-.|++.+.+++.+++++       .++... -+.+
T Consensus        13 ~~~vgiDiGt~~i~~~~~~~--~~~~i~~~g~~~~ps~~~~~g-~i~d~~~~~~~ik~~~~~-------~~~~~~-~v~~   81 (377)
T 2ych_A           13 VEALGLEIGASALKLVEVSG--NPPALKALASRPTPPGLLMEG-MVAEPAALAQEIKELLLE-------ARTRKR-YVVT   81 (377)
T ss_dssp             CCCEEEEECSSEEEEEEEET--TTTEEEEEEEEECCTTSEETT-EESCHHHHHHHHHHHHHH-------HTCCCC-EEEE
T ss_pred             CceEEEEeCCCeEEEEEEeC--CceEEEEEEeEECCCCcccCC-CcCCHHHHHHHHHHHHHH-------cCCCcc-eEEE
Confidence            45667999999999999963  44  44444444442111122 345787776666665554       233333 3456


Q ss_pred             EEcCC
Q psy9709         102 GITNQ  106 (500)
Q Consensus       102 gis~~  106 (500)
                      ++++.
T Consensus        82 ~i~~~   86 (377)
T 2ych_A           82 ALSNL   86 (377)
T ss_dssp             EECGG
T ss_pred             EecCC
Confidence            77653

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=88.70  E-value=0.73  Score=44.98  Aligned_cols=73  Identities=16%  Similarity=0.247  Sum_probs=46.2

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeE-EEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~-~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      ++||||.++..+++++++ + |+++......+.  .+..|+. +.....-.+.+..++++++++   ++++.++|.+|++
T Consensus         2 ~iLgIdts~~~~~val~~-~-g~i~~~~~~~~~--~~~gg~~p~~~~~~h~~~l~~~i~~~L~~---agi~~~did~Ia~   74 (330)
T 2ivn_A            2 LALGIEGTAHTLGIGIVS-E-DKVLANVFDTLT--TEKGGIHPKEAAEHHARLMKPLLRKALSE---AGVSLDDIDVIAF   74 (330)
T ss_dssp             CEEEEECSSSEEEEEEEC-S-SCEEEEEEEECC--CTTCCCCHHHHHHHHHHHHHHHHHHHHHH---HTCCTTTCCEEEE
T ss_pred             EEEEEEccCCCeEEEEEE-C-CEEEEEEEEEee--cccCCcCchhhHHHHHHHHHHHHHHHHHH---cCCCHHHCcEEEE
Confidence            489999999999999998 3 788865443332  2222332 111122333455566666655   4788889999987


Q ss_pred             c
Q psy9709         233 T  233 (500)
Q Consensus       233 s  233 (500)
                      +
T Consensus        75 ~   75 (330)
T 2ivn_A           75 S   75 (330)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A

Probab=88.01  E-value=1.3  Score=43.86  Aligned_cols=30  Identities=13%  Similarity=0.331  Sum_probs=24.1

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEee
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMD   55 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~   55 (500)
                      |++|..|+||+|..|||..+.+++++...+
T Consensus        14 iLviN~GSSSlK~~l~~~~~~~~l~~G~~e   43 (391)
T 3r9p_A           14 VLVINSGSSSLKFQLVDPEFGVAASTGIVE   43 (391)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEEEEC
T ss_pred             EEEEecCchhheeEEEecCCCceEEEEEEe
Confidence            677999999999999997456777766543

>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}

Probab=87.96  E-value=1.3  Score=43.89  Aligned_cols=29  Identities=14%  Similarity=0.371  Sum_probs=22.8

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHS   53 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~   53 (500)
                      .|++|..|+||+|..|||..+.+++++..
T Consensus        24 ~ILviN~GSSS~K~~l~~~~~~~~l~~g~   52 (398)
T 4ijn_A           24 TVLVVNSGSSSLKYAVVRPASGEFLADGI   52 (398)
T ss_dssp             EEEEEEECSSCEEEEEECTTTCCEEEEEE
T ss_pred             cEEEEeCCchhheEEEEECCCCceeeeee
Confidence            37779999999999999973445666654

>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}

Probab=87.93  E-value=2  Score=43.45  Aligned_cols=73  Identities=11%  Similarity=0.077  Sum_probs=46.7

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeee--ecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSM--DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~--~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      .+++||+|+|+.|+++++.. |. +...+.  +.|... ..|    ..+++++.+.+|+.+.+++..  .....-..|+.
T Consensus        60 ~~LAlDlGGTn~RV~~V~l~-g~-~~~~~~~~~ip~~~-~~g----~~~~LFd~Ia~~i~~fl~~~~--~~~~~lplGft  130 (445)
T 3hm8_A           60 DFLALDLGGTNFRVLLVRVT-TG-VQITSEIYSIPETV-AQG----SGQQLFDHIVDCIVDFQQKQG--LSGQSLPLGFT  130 (445)
T ss_dssp             EEEEEEESSSSEEEEEEEES-SS-EEEEEEEECCCHHH-HTS----BHHHHHHHHHHHHHHHHHHHT--CTTCCCCEEEE
T ss_pred             EEEEEEecCCeEEEEEEEEC-Cc-eEEEEEEeccCccc-cCC----CHHHHHHHHHHHHHHHHHHhC--cccccCcceEE
Confidence            57999999999999999985 65 322222  222211 011    457899999999999887631  11223345667


Q ss_pred             EcCC
Q psy9709         232 ITNQ  235 (500)
Q Consensus       232 vs~~  235 (500)
                      +|-+
T Consensus       131 FSFP  134 (445)
T 3hm8_A          131 FSFP  134 (445)
T ss_dssp             ECSC
T ss_pred             Eeee
Confidence            7654

>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A

Probab=87.61  E-value=0.61  Score=45.21  Aligned_cols=30  Identities=20%  Similarity=0.175  Sum_probs=20.7

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeee
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDIS   57 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~   57 (500)
                      ++|+|||+-|+|+++++. +|++ ...+.+.|
T Consensus         2 iiG~DIGGAn~K~a~~~~-~g~~-~~~~~~~P   31 (334)
T 3cet_A            2 ILGIDIGGANTKITELHE-NGEF-KVHHLYFP   31 (334)
T ss_dssp             EEEEEEC--CEEEEEECS-TTCC-EEEEC---
T ss_pred             eeEEEecccceeeeeecC-CCce-EEEEEecC
Confidence            567999999999999997 8987 55555555

>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti}

Probab=87.00  E-value=0.54  Score=45.60  Aligned_cols=32  Identities=19%  Similarity=0.200  Sum_probs=26.0

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeee
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDI   56 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~   56 (500)
                      ..+++||-||||.|+-++|. +|+++.+.+.+-
T Consensus         7 ~~~IavDWGTSnlRa~l~~~-~g~vl~~~~~~~   38 (330)
T 3t69_A            7 GYYAAVDWGTSSFRLWIIGE-DGAVLAERRSAE   38 (330)
T ss_dssp             -CEEEEEECSSCEEEEEECT-TSCEEEEEEESC
T ss_pred             CCEEEEEecchheehheecC-CCCchhhhcCCc
Confidence            34556999999999999998 899999776543

>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*

Probab=85.38  E-value=1.1  Score=43.37  Aligned_cols=76  Identities=9%  Similarity=0.097  Sum_probs=43.6

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeE--EEEeeeecccccCCCCeE---EEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEE--VVSHSMDISTISPQEGWA---EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV  228 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~v--i~~~~~~~~~~~~~~g~~---~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~  228 (500)
                      .+.+||+||+++|..+++..++.+  +...+.....   ..+-.   ..+ ++-.+...+++++..+.+...+  .++|.
T Consensus        13 ~~a~IDiGSns~rl~I~~~~~~~~~~i~~~k~~vrL---g~g~~~~g~ls-~eai~r~~~~L~~f~~~~~~~~--v~~i~   86 (315)
T 1t6c_A           13 RVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSL---GTKVKETGRLQ-EDRIEETIQVLKEYKKLIDEFK--VERVK   86 (315)
T ss_dssp             EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCT---TTTHHHHSSCC-HHHHHHHHHHHHHHHHHHHHTT--CSEEE
T ss_pred             EEEEEEECcCcEEEEEEEEcCCcEEEEeeeeEEeec---CCCccccCCcC-HHHHHHHHHHHHHHHHHHHHCC--CCeEE
Confidence            477899999999999999764533  3333333221   11111   122 3344455567776666554443  35677


Q ss_pred             EEEEcCC
Q psy9709         229 TLGITNQ  235 (500)
Q Consensus       229 ~I~vs~~  235 (500)
                      +++.++.
T Consensus        87 ~vATsA~   93 (315)
T 1t6c_A           87 AVATEAI   93 (315)
T ss_dssp             EEECHHH
T ss_pred             EEEcHHH
Confidence            7775543

>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti}

Probab=84.02  E-value=0.89  Score=44.09  Aligned_cols=37  Identities=19%  Similarity=0.155  Sum_probs=27.2

Q ss_pred             cccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecc
Q psy9709         149 QTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS  186 (500)
Q Consensus       149 ~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~  186 (500)
                      +.++..+|+||-||||.|+-++|.+ |++++..+.+-.
T Consensus         3 ~~~~~~~IavDWGTSnlRa~l~~~~-g~vl~~~~~~~G   39 (330)
T 3t69_A            3 MTTAGYYAAVDWGTSSFRLWIIGED-GAVLAERRSAEG   39 (330)
T ss_dssp             -----CEEEEEECSSCEEEEEECTT-SCEEEEEEESCC
T ss_pred             cCCCCCEEEEEecchheehheecCC-CCchhhhcCCcc
Confidence            4456778999999999999999975 999987655443

>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}

Probab=83.78  E-value=1.5  Score=42.92  Aligned_cols=77  Identities=16%  Similarity=0.094  Sum_probs=43.7

Q ss_pred             CEEEEEeccCCCceEEEEeCC-CCeE--EEEeeeecccccCCCCeE---EEChHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy9709         153 PLIGVIDEGTRTVRFAIISAL-TQEE--VVSHSMDISTISPQEGWA---EQDPMEILQAVQTTMDRAIEKLSAHGLSRDD  226 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~-~G~v--i~~~~~~~~~~~~~~g~~---~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~  226 (500)
                      ..+.+||+||+|+|..+++.. +|.+  +...+....  . ..|-.   ..+ ++-.+...+++++..+.+...  ..++
T Consensus        16 ~~~A~IDiGSNsiRL~I~~~~~~~~~~~i~~~k~~vr--L-g~g~~~~g~ls-~eai~r~~~aL~~f~~~~~~~--~v~~   89 (343)
T 3cer_A           16 VTVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIR--L-GQDVDKTHRFA-DEALERAYVAAREFAGVIAEH--PIDG   89 (343)
T ss_dssp             EEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCC--T-TTTHHHHSSCC-HHHHHHHHHHHHHHHHHHTTS--CCSE
T ss_pred             CeEEEEEcccceeEeEEEEEcCCCCEEEEEEEEEEee--C-CCCccccCCcC-HHHHHHHHHHHHHHHHHHHHC--CCCe
Confidence            357899999999999999964 2433  333333222  1 11111   122 344455566777776665433  3456


Q ss_pred             eeEEEEcCC
Q psy9709         227 IVTLGITNQ  235 (500)
Q Consensus       227 I~~I~vs~~  235 (500)
                      |.+++.++.
T Consensus        90 v~~vATsA~   98 (343)
T 3cer_A           90 LRFVATSAT   98 (343)
T ss_dssp             EEEEECHHH
T ss_pred             EEEEecHHH
Confidence            777765443

>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*

Probab=82.60  E-value=1.2  Score=46.31  Aligned_cols=79  Identities=11%  Similarity=0.159  Sum_probs=47.7

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCe--EEEEeeeecccc--cCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQE--EVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV  228 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~--vi~~~~~~~~~~--~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~  228 (500)
                      ..+.+||+||+|+|..+++...|.  ++...+.+...-  ....|.  .++ +-.+...+|+++..+.+..  ...++|.
T Consensus        11 ~~~AaIDiGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~--Ls~-eai~r~~~~L~~f~~~~~~--~~v~~v~   85 (513)
T 1u6z_A           11 QEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNM--LSE-EAMTRGLNCLSLFAERLQG--FSPASVC   85 (513)
T ss_dssp             -CEEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCC--BCH-HHHHHHHHHHHHHHHHTTT--CCGGGEE
T ss_pred             CeEEEEEeccccEEEEEEEEcCCeeEEEEeeEEEEeccCcccccCC--cCH-HHHHHHHHHHHHHHHHHHh--CCCCEEE
Confidence            357899999999999999975453  344444433321  122232  333 4445556777777665533  3456788


Q ss_pred             EEEEcCCC
Q psy9709         229 TLGITNQR  236 (500)
Q Consensus       229 ~I~vs~~~  236 (500)
                      +++.++..
T Consensus        86 ~vATsA~R   93 (513)
T 1u6z_A           86 IVGTHTLR   93 (513)
T ss_dssp             EEECHHHH
T ss_pred             EEecHHHH
Confidence            88876654

>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*

Probab=82.41  E-value=2.1  Score=43.72  Aligned_cols=76  Identities=11%  Similarity=0.140  Sum_probs=47.4

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCe-----EEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCC-CCC
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQE-----EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS-RDD  226 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~-----vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~-~~~  226 (500)
                      --+|+||+|+|+.|+++++.. |.     .+...+..+++  |+. ...-..+++++.+.+|+.+.+++   .+.. ..-
T Consensus        77 G~fLAlDlGGTNfRV~~V~L~-g~~~~~~~~~~~~~~~~I--p~~-l~~gt~~eLFd~IA~~i~~fl~~---~~~~~~~l  149 (470)
T 3f9m_A           77 GDFLSLDLGGTNFRVMLVKVG-EGEEGQWSVKTKHQMYSI--PED-AMTGTAEMLFDYISECISDFLDK---HQMKHKKL  149 (470)
T ss_dssp             EEEEEEEESSSEEEEEEEEEE-C----CEEEEEEEEEEEC--CHH-HHSSBHHHHHHHHHHHHHHHHHH---TTCSSSCC
T ss_pred             eEEEEEEecCceEEEEEEEEC-CCCCCcceEEEEEEeecC--ChH-hccCCHHHHHHHHHHHHHHHHhh---cccccccc
Confidence            357999999999999999975 43     34333333331  110 00124689999999999999875   2322 223


Q ss_pred             eeEEEEcCC
Q psy9709         227 IVTLGITNQ  235 (500)
Q Consensus       227 I~~I~vs~~  235 (500)
                      ..|+.+|-+
T Consensus       150 pLGfTFSFP  158 (470)
T 3f9m_A          150 PLGFTFSFP  158 (470)
T ss_dssp             EEEEEECSC
T ss_pred             ceEEEEecc
Confidence            456666654

>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*

Probab=81.33  E-value=0.88  Score=46.49  Aligned_cols=81  Identities=14%  Similarity=0.115  Sum_probs=46.0

Q ss_pred             cEEEEEecCCCcceEEEEeCCCC-----cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHH--HhCCCCCC
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQ-----EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL--SAHGLSRD   96 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g-----~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~--~~~~~~~~   96 (500)
                      .|+++||+|++++|..||+-..+     .++... .......+.-.-...+|+.+.+.+..+++...+.+  .+.+  ..
T Consensus        34 ~y~~vID~GSns~Rl~Vy~~~~~~~~~~~~~~~~-~~~~~~~~Gls~~~~~pe~~~~~l~~Ll~~a~~~iP~~~~~--~t  110 (456)
T 3cj1_A           34 KYGIVLDAGSSHTSMFVYKWPADKENDTGIVGQH-SSCDVQGGGISSYANDPSKAGQSLVRCLEQALRDVPRDRHA--ST  110 (456)
T ss_dssp             EEEEEEEECSSCEEEEEEEEETTSTTSTTCCEEE-EEEECSSSCGGGGTTSTHHHHHHTHHHHHHHHHHSCHHHHT--TC
T ss_pred             eEEEEEEcCCCCeEEEEEEEcCCCCCCccceeee-eeeeecccccccccCCHHHHHHHHHHHHHHHHHhCCHHHcC--Cc
Confidence            46777999999999999985121     123221 11111112211122468888877777776654321  1122  34


Q ss_pred             CeeEEEEcCCc
Q psy9709          97 DIVTLGITNQR  107 (500)
Q Consensus        97 ~i~~Igis~~~  107 (500)
                      .|..++-+++|
T Consensus       111 ~v~~~ATAgmR  121 (456)
T 3cj1_A          111 PLYLGATAGMR  121 (456)
T ss_dssp             EEEEEECHHHH
T ss_pred             eEEEEeeHHHh
Confidence            58888888776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	500
d2p3ra1	252	c.55.1.4 (A:2-253) Glycerol kinase {Escherichia co	2e-60
d2p3ra1	252	c.55.1.4 (A:2-253) Glycerol kinase {Escherichia co	2e-19
d1r59o1	252	c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus c	1e-57
d1r59o1	252	c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus c	3e-17
d1r59o2	235	c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus	2e-19
d2p3ra2	247	c.55.1.4 (A:254-500) Glycerol kinase {Escherichia	4e-18

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 252

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

 Score =  189 bits (481), Expect = 1e-57
 Identities = 90/239 (37%), Positives = 132/239 (55%), Gaps = 7/239 (2%)

Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
           +  ID+GT + R  I      +++ S   +     P+ GW E +  EI  +VQ+ +  A 
Sbjct: 3   VMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 61

Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
            +    G+  + I  +GITNQRETTVVWD  TG+P+ NAIVW   ++  I DQ+      
Sbjct: 62  IE---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDG-- 116

Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
              + +    GL +  YFSA K+ WL+ N+   +        LFGT+D+WLVW LT    
Sbjct: 117 -HTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQV 175

Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTV 393
           HVTD +NASRTML NI  L+WD  +     +P ++LPE++S+SE+YG   S +   + V
Sbjct: 176 HVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYHFYGSEV 234

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 252

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

 Score = 79.0 bits (194), Expect = 3e-17
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 26  IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
           +  ID+GT + R  I      +++ S   +     P+ GW E +  EI  +VQ+ +  A 
Sbjct: 3   VMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 61

Query: 86  EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
            +    G+  + I  +GITNQRETTVVWD  TG+P+ NAI
Sbjct: 62  IE---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAI 98

>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 235

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

 Score = 85.3 bits (210), Expect = 2e-19
 Identities = 52/115 (45%), Positives = 76/115 (66%), Gaps = 2/115 (1%)

Query: 382 KVHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKV 441
              S+N L+TT+ Y    +    YALEGSI VAG+A++WLRD L +++   ++E LA K 
Sbjct: 24  PQLSDNDLLTTIGYGI--NGKVYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKA 81

Query: 442 MTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDI 496
               +VY VPAF GL APYW  +ARG + G+T+ TTK   +RA L+A+ +Q++D+
Sbjct: 82  KGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDV 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	500
d2p3ra1	252	Glycerol kinase {Escherichia coli [TaxId: 562]}	100.0
d1r59o1	252	Glycerol kinase {Enterococcus casseliflavus [TaxId	100.0
d2p3ra1	252	Glycerol kinase {Escherichia coli [TaxId: 562]}	99.89
d1r59o1	252	Glycerol kinase {Enterococcus casseliflavus [TaxId	99.85
d2p3ra2	247	Glycerol kinase {Escherichia coli [TaxId: 562]}	99.83
d1r59o2	235	Glycerol kinase {Enterococcus casseliflavus [TaxId	99.82
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	99.15
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	98.88
d2ap1a2	117	Putative regulator protein YcfX {Salmonella typhim	98.64
d2ap1a2	117	Putative regulator protein YcfX {Salmonella typhim	98.63
d2hoea3	128	N-acetylglucosamine kinase {Thermotoga maritima [T	98.59
d2hoea3	128	N-acetylglucosamine kinase {Thermotoga maritima [T	98.51
d1z05a3	128	Transcriptional regulator VC2007 {Vibrio cholerae	98.43
d1z05a3	128	Transcriptional regulator VC2007 {Vibrio cholerae	98.42
d2aa4a1	119	N-acetylmannosamine kinase NanK {Escherichia coli	98.38
d2gupa1	114	Hypothetical protein SP2142 {Streptococcus pneumon	98.37
d1z6ra2	129	Mlc protein {Escherichia coli [TaxId: 562]}	98.3
d2aa4a1	119	N-acetylmannosamine kinase NanK {Escherichia coli	98.27
d2ch5a2	117	N-acetylglucosamine kinase, NAGK {Human (Homo sapi	98.24
d1z6ra2	129	Mlc protein {Escherichia coli [TaxId: 562]}	98.23
d2gupa1	114	Hypothetical protein SP2142 {Streptococcus pneumon	98.22
d1woqa1	129	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	98.13
d1woqa1	129	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	98.05
d1xc3a1	118	Putative fructokinase YhdR {Bacillus subtilis [Tax	97.94
d1xc3a1	118	Putative fructokinase YhdR {Bacillus subtilis [Tax	97.83
d2ch5a2	117	N-acetylglucosamine kinase, NAGK {Human (Homo sapi	97.8
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	97.52
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	97.33
d1sz2a1	319	Glucokinase Glk {Escherichia coli [TaxId: 562]}	97.28
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	97.17
d1sz2a1	319	Glucokinase Glk {Escherichia coli [TaxId: 562]}	97.01
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	96.97
d1bdga1	208	Hexokinase {Blood fluke (Schistosoma mansoni) [Tax	96.28
d1czan3	205	Mammalian type I hexokinase {Human (Homo sapiens)	96.12
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	95.78
d1ig8a1	207	Hexokinase {Baker's yeast (Saccharomyces cerevisia	95.64
d1czan1	207	Mammalian type I hexokinase {Human (Homo sapiens)	95.41
d1saza1	172	butyrate kinase 2 {Thermotoga maritima [TaxId: 233	95.03
d1v4sa1	205	Glucokinase {Human (Homo sapiens) [TaxId: 9606]}	94.91
d1zbsa2	107	Hypothetical protein PG1100 {Porphyromonas gingiva	94.81
d1e4ft1	193	Cell division protein FtsA {Thermotoga maritima [T	94.77
d1t6ca1	126	Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6	94.73
d1e4ft1	193	Cell division protein FtsA {Thermotoga maritima [T	94.15
d1ig8a1	207	Hexokinase {Baker's yeast (Saccharomyces cerevisia	94.09
d3bzka5	149	Transcriptional accessory factor Tex {Pseudomonas	93.94
d1t6ca1	126	Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6	93.85
d2e1za1	189	Propionate kinase {Salmonella typhimurium [TaxId:	93.73
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	93.08
d1u6za2	124	Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5	92.69
d1bdga1	208	Hexokinase {Blood fluke (Schistosoma mansoni) [Tax	92.5
d1u6za2	124	Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5	92.24
d3bexa1	118	Type III pantothenate kinase, CoaX {Thermotoga mar	92.0
d1zbsa2	107	Hypothetical protein PG1100 {Porphyromonas gingiva	91.8
d1nbwa2	239	ATPase domain of the glycerol dehydratase reactiva	91.54
d1czan3	205	Mammalian type I hexokinase {Human (Homo sapiens)	91.35
d1g99a1	197	Acetate kinase {Archaeon Methanosarcina thermophil	91.26
d1czan1	207	Mammalian type I hexokinase {Human (Homo sapiens)	89.79
d3bzka5	149	Transcriptional accessory factor Tex {Pseudomonas	89.34
d1v4sa1	205	Glucokinase {Human (Homo sapiens) [TaxId: 9606]}	88.65
d3bexa1	118	Type III pantothenate kinase, CoaX {Thermotoga mar	87.61
d1nbwa2	239	ATPase domain of the glycerol dehydratase reactiva	87.39
d2e1za1	189	Propionate kinase {Salmonella typhimurium [TaxId:	87.23
d1saza1	172	butyrate kinase 2 {Thermotoga maritima [TaxId: 233	84.69
d1g99a1	197	Acetate kinase {Archaeon Methanosarcina thermophil	84.14
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	80.55
d2d0oa2	241	Diol dehydratase-reactivating factor large subunit	80.12

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=100.00  E-value=1.7e-44  Score=346.37  Aligned_cols=231  Identities=39%  Similarity=0.693  Sum_probs=206.9

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      +|+||||+|||++|+++||.+ |++++..+.+++...+++||.||||++||++++++++++.++   ..++..+|.+|++
T Consensus         1 nyvlgiDiGTtsvKa~l~D~~-g~~~~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~~~~~~~~---~~~~~~~i~aI~i   76 (252)
T d1r59o1           1 NYVMAIDQGTTSSRAIIFDRN-GKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGIGI   76 (252)
T ss_dssp             CEEEEEBCCSSBCBCCEECSS-SCBCCCCCCBCCCCCCSTTCCBCCGGGSSSTTTTTSHHHHTT---TTCCTTSEEEEEE
T ss_pred             CEEEEEEecccceeeeEEeCC-CCEEEEEEEeCCceecCCCcEEECHHHHHHHHHHHHHHHhhh---hhhcccccceEEE
Confidence            489999999999999999975 999999999999888999999999999999999999988764   4667889999999


Q ss_pred             cCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhh
Q psy9709         233 TNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIK  312 (500)
Q Consensus       233 s~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~  312 (500)
                      |+|++++|++|+++|+|++|+++|+|.|+.++++++.....   .+.+++.||.++++.++++|++|+++|+||.+++++
T Consensus        77 s~~~~~~v~~D~~~G~~l~~~i~w~D~r~~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~  153 (252)
T d1r59o1          77 TNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGH---TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKAD  153 (252)
T ss_dssp             CCCSSCCCCBCSSSCCCSSCCBCTTCCSSCHHHHHHHHHTC---HHHHTTTTCCCSSTTSHHHHSHHHHSSSSSSSTTTT
T ss_pred             eCCcceEEEEECCCCCCcccccccCccchHHHHHHHHhcCC---HHHHHHHHCCCCCccchHHHHHHHHHhhhHHHHHHH
Confidence            99999999999646999999999999999999999988765   477889999999999999999999999999999887


Q ss_pred             cccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecCCcce
Q psy9709         313 ENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLV  390 (500)
Q Consensus       313 ~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~~G~~  390 (500)
                      +....+..+++||.|+|||....++|+++|+++++||+++++|++++++.+|+++++||+|+++++++|.+.+..|+.
T Consensus       154 ~~~~~~~~~~~~l~~~Ltg~~~~~~d~s~as~t~~~d~~~~~w~~~l~~~~gi~~~~LP~l~~~g~~~G~v~~~~~l~  231 (252)
T d1r59o1         154 NGELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYHFYG  231 (252)
T ss_dssp             TTCCBCCCHHHHHHHTSSSSCCCEECHHHHTTSSSBCTTTSSBCHHHHTTTTCCSSSSCEECCSSSCCBCCSS-----
T ss_pred             hccccccchHHHHHHHhcCCCcccccccchhhccccCcccccchHHHHHHhCCCHHHCCCcccCCCceEEeChhhcCC
Confidence            333447789999999999522678999999999999999999999999999999999999999999999987766543

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=99.85  E-value=4.6e-23  Score=196.22  Aligned_cols=105  Identities=35%  Similarity=0.555  Sum_probs=98.7

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      |++|||+|||++|++|||. +|+++++.+.+++..++++||+||||++||++++++++++.+.   .+.+..+|++||||
T Consensus         2 yvlgiDiGTtsvKa~l~D~-~g~~~~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~~~~~~~~---~~~~~~~i~aI~is   77 (252)
T d1r59o1           2 YVMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGIGIT   77 (252)
T ss_dssp             EEEEEBCCSSBCBCCEECS-SSCBCCCCCCBCCCCCCSTTCCBCCGGGSSSTTTTTSHHHHTT---TTCCTTSEEEEEEC
T ss_pred             EEEEEEecccceeeeEEeC-CCCEEEEEEEeCCceecCCCcEEECHHHHHHHHHHHHHHHhhh---hhhcccccceEEEe
Confidence            6788999999999999998 9999999999999999999999999999999999999999877   78888999999999


Q ss_pred             CCcceeEEeeCCCCCccccccccCCcccc
Q psy9709         105 NQRETTVVWDLNTGEPLYNAIDKMPSLVY  133 (500)
Q Consensus       105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~~  133 (500)
                      +|++++|++|+++|+|++|+|+|+|.|..
T Consensus        78 ~~~~~~v~~D~~~G~~l~~~i~w~D~r~~  106 (252)
T d1r59o1          78 NQRETTVVWDKTTGQPIANAIVWQSRQSS  106 (252)
T ss_dssp             CCSSCCCCBCSSSCCCSSCCBCTTCCSSC
T ss_pred             CCcceEEEEECCCCCCcccccccCccchH
Confidence            99999999996469999999999999973

>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=99.82  E-value=2.7e-21  Score=181.12  Aligned_cols=113  Identities=45%  Similarity=0.829  Sum_probs=95.7

Q ss_pred             CCcceEEEEEeecCCCCceeeechhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCC
Q psy9709         386 NNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDA  465 (500)
Q Consensus       386 ~~G~~~~~~~~~~~~~p~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~  465 (500)
                      ..|+++++++.++..  ..|.++|+++++|.+++|+++.+...+..+..++++...+++++++|+|||.|+|+|+||+++
T Consensus        28 ~~gll~t~~~~~~~~--~~y~~eg~~~~~G~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~g~~flP~~~G~~~P~~~~~a  105 (235)
T d1r59o2          28 DNDLLTTIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEA  105 (235)
T ss_dssp             SSSCEEEECCCSSSC--CCEEEECCCSCSSHHHHHTTTTSCSSSSGGGGTTTTSSSSSCSSCEEECCTTCCCTTTCCSSC
T ss_pred             CCCcEEEEEEEeCCc--cEEEeHHHHHHHHHHHHHHHhhhhcccchhhhcccccccCCCCcceeeehhhhccccccCCCc
Confidence            456777777665432  479999999999999999999887654444444444445599999999999999999999999


Q ss_pred             cEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709         466 RGVICGMTQFTTKGHIIRAALEAICFQTRDILELY  500 (500)
Q Consensus       466 ~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~  500 (500)
                      ||+|+||+.+|+++||+||++|||||++|+++|.|
T Consensus       106 rg~~~Gl~~~~~~~~l~rAvlEgiaf~~~~~~e~~  140 (235)
T d1r59o2         106 RGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTM  140 (235)
T ss_dssp             CCEEESCCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEeecccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999864

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=99.15  E-value=3.3e-11  Score=98.68  Aligned_cols=97  Identities=13%  Similarity=0.122  Sum_probs=71.9

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCe----e
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI----V   99 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i----~   99 (500)
                      +|++|||+|||++|++|+|. +|+++.+.+.       .+++.+++++++|+.+.+++++++++   .++...++    .
T Consensus         4 ~y~lGID~GGT~tk~~l~d~-~G~il~~~~~-------~~~~~~~~~~~~~~~i~~~i~~~~~~---ag~~~~~~~~~~~   72 (114)
T d1zc6a1           4 RYLIGVDGGGTGTRIRLHAS-DGTPLAMAEG-------GASALSQGIAKSWQAVLSTLEAAFQQ---AGLPAAPASACAI   72 (114)
T ss_dssp             CEEEEEEECSSCEEEEEEET-TCCEEEEEEE-------SCCCGGGCHHHHHHHHHHHHHHHHHH---TTCCCCCGGGEEE
T ss_pred             cEEEEEEcCcceEEEEEEcC-CCCEEEEEEc-------cCCCcccCHHHHHHHHHHHHHHHHHH---cCCChhhhceeEE
Confidence            46777999999999999998 9999987653       24567899999999999999999988   88877776    4


Q ss_pred             EEEEcCCcc--eeEEeeCCCCCccccccccCCccc
Q psy9709         100 TLGITNQRE--TTVVWDLNTGEPLYNAIDKMPSLV  132 (500)
Q Consensus       100 ~Igis~~~~--~~v~~d~~~g~pl~p~i~w~d~~~  132 (500)
                      ++|+.+..+  ....+++ ...|+.|++.+.|.++
T Consensus        73 ~~g~aG~~~~~~~~~l~~-~~~~~~~v~v~nDa~~  106 (114)
T d1zc6a1          73 GLGLSGVHNRQWAGEFES-QAPGFARLSLATDGYT  106 (114)
T ss_dssp             EEEESCCCTTSHHHHHHH-TCCCCSEEEEECHHHH
T ss_pred             EEEecCCCcHHHHHHHHH-hCCCCCeEEEECHHHH
Confidence            455554332  2233334 3456667777776543

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.88  E-value=1.2e-09  Score=89.21  Aligned_cols=100  Identities=14%  Similarity=0.131  Sum_probs=68.8

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee---
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV---  228 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~---  228 (500)
                      ++|+||||+|+|++|++++|.+ |+++.+.+..       +++.+++++++|+.+..++++++++   .++...++.   
T Consensus         3 m~y~lGID~GGT~tk~~l~d~~-G~il~~~~~~-------~~~~~~~~~~~~~~i~~~i~~~~~~---ag~~~~~~~~~~   71 (114)
T d1zc6a1           3 IRYLIGVDGGGTGTRIRLHASD-GTPLAMAEGG-------ASALSQGIAKSWQAVLSTLEAAFQQ---AGLPAAPASACA   71 (114)
T ss_dssp             CCEEEEEEECSSCEEEEEEETT-CCEEEEEEES-------CCCGGGCHHHHHHHHHHHHHHHHHH---TTCCCCCGGGEE
T ss_pred             ccEEEEEEcCcceEEEEEEcCC-CCEEEEEEcc-------CCCcccCHHHHHHHHHHHHHHHHHH---cCCChhhhceeE
Confidence            5699999999999999999985 9999875443       2335689999999999999999876   566666653   


Q ss_pred             -EEEEcCCCce--eEEEeCCCCcccccceeeccCCCHH
Q psy9709         229 -TLGITNQRET--TVVWDLNTGEPLYNAIVWSDTRADN  263 (500)
Q Consensus       229 -~I~vs~~~~~--~v~~d~~~G~~l~~~i~w~D~r~~~  263 (500)
                       ++++.+..+.  ...+.+ ...++.++..++|.++..
T Consensus        72 ~~~g~aG~~~~~~~~~l~~-~~~~~~~v~v~nDa~~A~  108 (114)
T d1zc6a1          72 IGLGLSGVHNRQWAGEFES-QAPGFARLSLATDGYTTL  108 (114)
T ss_dssp             EEEEESCCCTTSHHHHHHH-TCCCCSEEEEECHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHH-hCCCCCeEEEECHHHHHH
Confidence             3344433211  111222 133445777888876543

>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.64  E-value=5.4e-08  Score=79.30  Aligned_cols=91  Identities=11%  Similarity=0.071  Sum_probs=67.0

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  234 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~  234 (500)
                      +||||+|+|++|++++|.. |+++...+.+++         ..+++.+.+.+.++++++..+.       ..+.+||++.
T Consensus         2 yiGiDiGgT~i~~~l~d~~-g~i~~~~~~~t~---------~~~~~~~~~~i~~~i~~~~~~~-------~~~~~igi~~   64 (117)
T d2ap1a2           2 YYGFDIGGTKIALGVFDST-RRLQWEKRVPTP---------HTSYSAFLDAVCELVEEADQRF-------GVKGSVGIGI   64 (117)
T ss_dssp             EEEEEECSSEEEEEEEETT-CCEEEEEEEECC---------CSCHHHHHHHHHHHHHHHHHHH-------TSCCEEEEEE
T ss_pred             EEEEEECcceEEEEEEeCC-CCEEEEEEEeec---------ccCHHHHHHHHHHHHHHHHhhc-------CcceeEEEec
Confidence            5999999999999999985 999988877654         2367788888888888877653       3456788887


Q ss_pred             CCceeEEEeCCCCcccccce-eeccCCCHHHHH
Q psy9709         235 QRETTVVWDLNTGEPLYNAI-VWSDTRADNIVD  266 (500)
Q Consensus       235 ~~~~~v~~d~~~G~~l~~~i-~w~D~r~~~~~~  266 (500)
                      ++    ++|.++|....+.+ -|.+..-.+.++
T Consensus        65 pG----~vd~~~g~i~~~~~~~w~~~~l~~~l~   93 (117)
T d2ap1a2          65 PG----MPETEDGTLYAANVPAASGKPLRADLS   93 (117)
T ss_dssp             SS----BSCCTTSCCBCTTCTTTTTSCHHHHHH
T ss_pred             CC----ccccccceeeccCccccCCCcHHHHHH
Confidence            77    78886666655444 466665444433

>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.63  E-value=6.5e-08  Score=78.80  Aligned_cols=79  Identities=13%  Similarity=0.111  Sum_probs=60.5

Q ss_pred             EEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCC
Q psy9709          27 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ  106 (500)
Q Consensus        27 ~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~  106 (500)
                      +|||+|+|++|++++|. +|+++.+.+.+++         +.+++++.+.+.+.++++.++   .    ..+.+|||+..
T Consensus         3 iGiDiGgT~i~~~l~d~-~g~i~~~~~~~t~---------~~~~~~~~~~i~~~i~~~~~~---~----~~~~~igi~~p   65 (117)
T d2ap1a2           3 YGFDIGGTKIALGVFDS-TRRLQWEKRVPTP---------HTSYSAFLDAVCELVEEADQR---F----GVKGSVGIGIP   65 (117)
T ss_dssp             EEEEECSSEEEEEEEET-TCCEEEEEEEECC---------CSCHHHHHHHHHHHHHHHHHH---H----TSCCEEEEEES
T ss_pred             EEEEECcceEEEEEEeC-CCCEEEEEEEeec---------ccCHHHHHHHHHHHHHHHHhh---c----CcceeEEEecC
Confidence            56999999999999998 9999998887653         246888999999999888766   2    34567777766


Q ss_pred             cceeEEeeCCCCCccccccc
Q psy9709         107 RETTVVWDLNTGEPLYNAID  126 (500)
Q Consensus       107 ~~~~v~~d~~~g~pl~p~i~  126 (500)
                      +    ++|.++|....+.+.
T Consensus        66 G----~vd~~~g~i~~~~~~   81 (117)
T d2ap1a2          66 G----MPETEDGTLYAANVP   81 (117)
T ss_dssp             S----BSCCTTSCCBCTTCT
T ss_pred             C----ccccccceeeccCcc
Confidence            6    568766665555443

>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.59  E-value=7e-08  Score=79.89  Aligned_cols=90  Identities=13%  Similarity=0.140  Sum_probs=70.8

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .|++|||+|+|+++++++|. +|+++.+.+.+++        ...+++.+.+.+.+.++++.+.   .+....+|.+|||
T Consensus         4 ~~~igidig~~~i~~~l~d~-~G~il~~~~~~~~--------~~~~~~~~~~~i~~~i~~~~~~---~~~~~~~i~gigi   71 (128)
T d2hoea3           4 AYVLGIEVTRDEIAACLIDA-SMNILAHEAHPLP--------SQSDREETLNVMYRIIDRAKDM---MEKLGSKLSALTV   71 (128)
T ss_dssp             CEEEEEEECSSEEEEEEEET-TCCEEEEEEEECC--------SSCCHHHHHHHHHHHHHHHHHH---HHHTTCCCCEEEE
T ss_pred             EEEEEEEECCCEEEEEEEcC-CCCEEEEEEEecc--------cCCCHHHHHHHHHHHHHHHHHH---hccccCceEEEec
Confidence            47888999999999999998 9999998887765        2347888999999999988876   4445678999999


Q ss_pred             cCCcceeEEeeCCCCCccc-cccccCC
Q psy9709         104 TNQRETTVVWDLNTGEPLY-NAIDKMP  129 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~-p~i~w~d  129 (500)
                      +..+    ++|.++|..+. |.+-|.+
T Consensus        72 ~~pG----~vd~~~g~i~~~~~l~w~~   94 (128)
T d2hoea3          72 AAPG----PIDTERGIIIDPRNFPLSQ   94 (128)
T ss_dssp             EESS----CEETTTTEECCCSSCTTBT
T ss_pred             ceee----eEcCCCCEEEeeccccccC
Confidence            9777    46886666654 4445754

>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.51  E-value=1e-07  Score=78.87  Aligned_cols=98  Identities=14%  Similarity=0.170  Sum_probs=75.1

Q ss_pred             CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      ..|++|||+|.++++++++|.. |+++...+.+++.        ..+++++.+.+.++++++.+...   ....++.+||
T Consensus         3 ~~~~igidig~~~i~~~l~d~~-G~il~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~~---~~~~~i~gig   70 (128)
T d2hoea3           3 CAYVLGIEVTRDEIAACLIDAS-MNILAHEAHPLPS--------QSDREETLNVMYRIIDRAKDMME---KLGSKLSALT   70 (128)
T ss_dssp             GCEEEEEEECSSEEEEEEEETT-CCEEEEEEEECCS--------SCCHHHHHHHHHHHHHHHHHHHH---HTTCCCCEEE
T ss_pred             cEEEEEEEECCCEEEEEEEcCC-CCEEEEEEEeccc--------CCCHHHHHHHHHHHHHHHHHHhc---cccCceEEEe
Confidence            3589999999999999999985 9999887776652        25778888888888888877643   3457899999


Q ss_pred             EcCCCceeEEEeCCCCcccc-cceeeccCCCHHHH
Q psy9709         232 ITNQRETTVVWDLNTGEPLY-NAIVWSDTRADNIV  265 (500)
Q Consensus       232 vs~~~~~~v~~d~~~G~~l~-~~i~w~D~r~~~~~  265 (500)
                      |+.++    ++|.++|..++ |.+.|.+..-.+.+
T Consensus        71 i~~pG----~vd~~~g~i~~~~~l~w~~~~l~~~l  101 (128)
T d2hoea3          71 VAAPG----PIDTERGIIIDPRNFPLSQIPLANLL  101 (128)
T ss_dssp             EEESS----CEETTTTEECCCSSCTTBTSCHHHHH
T ss_pred             cceee----eEcCCCCEEEeeccccccCCchHHHH
Confidence            99887    68886676654 55668887644433

>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

Probab=98.43  E-value=6.3e-07  Score=73.84  Aligned_cols=93  Identities=14%  Similarity=0.130  Sum_probs=71.1

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      +++|||+|.++++++++|.. |+++...+.+++         ..+++++.+.+.+++++++++   .+.+..+|.+||++
T Consensus         5 ~~lgi~ig~~~i~~~l~d~~-G~il~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~~~~~~~i~gIgi~   71 (128)
T d1z05a3           5 QFLSMRLGRGYLTIALHELG-GEVLIDTKIDIH---------EIDQDDVLARLLFEIEEFFQT---YAAQLDRVTSIAIT   71 (128)
T ss_dssp             EEEEEEEETTEEEEEEEETT-SCEEEEEEEECC---------CCBHHHHHHHHHHHHHHHHHH---TTTTCCEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEcCC-CCEEEEEEeccc---------cCCHHHHHHHHHHHHHHHHHH---cccccccceEEEee
Confidence            58999999999999999986 999987766654         245678888899999998876   46667889999999


Q ss_pred             CCCceeEEEeCCCCcccc-cceeeccCCCHH
Q psy9709         234 NQRETTVVWDLNTGEPLY-NAIVWSDTRADN  263 (500)
Q Consensus       234 ~~~~~~v~~d~~~G~~l~-~~i~w~D~r~~~  263 (500)
                      .++    ++|.+.+.... |.+.|.+....+
T Consensus        72 ~pG----~vd~~~~~~~~~~~~~~~~~~l~~   98 (128)
T d1z05a3          72 LPG----LVNSEQGIVLQMPHYNVKNLALGP   98 (128)
T ss_dssp             ESS----EEETTTTEEEECSSSBCSSBCHHH
T ss_pred             eee----eeeccceeeeccccCCCCCcchHH
Confidence            887    78874444443 344577665433

>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

Probab=98.42  E-value=6e-07  Score=73.96  Aligned_cols=89  Identities=15%  Similarity=0.146  Sum_probs=69.0

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      ..++|||+|.++++++++|. +|+++.+.+.+++         +.++++..+.+.+.+++++++   .+.+..+|.+|||
T Consensus         4 ~~~lgi~ig~~~i~~~l~d~-~G~il~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~~~~~~~i~gIgi   70 (128)
T d1z05a3           4 WQFLSMRLGRGYLTIALHEL-GGEVLIDTKIDIH---------EIDQDDVLARLLFEIEEFFQT---YAAQLDRVTSIAI   70 (128)
T ss_dssp             EEEEEEEEETTEEEEEEEET-TSCEEEEEEEECC---------CCBHHHHHHHHHHHHHHHHHH---TTTTCCEEEEEEE
T ss_pred             CEEEEEEECCCEEEEEEEcC-CCCEEEEEEeccc---------cCCHHHHHHHHHHHHHHHHHH---cccccccceEEEe
Confidence            34677999999999999998 9999998776654         235778999999999999988   7888889999999


Q ss_pred             cCCcceeEEeeCCCCCccccc-cccCC
Q psy9709         104 TNQRETTVVWDLNTGEPLYNA-IDKMP  129 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~p~-i~w~d  129 (500)
                      +..+    ++|.+.+....+. +.|.+
T Consensus        71 ~~pG----~vd~~~~~~~~~~~~~~~~   93 (128)
T d1z05a3          71 TLPG----LVNSEQGIVLQMPHYNVKN   93 (128)
T ss_dssp             EESS----EEETTTTEEEECSSSBCSS
T ss_pred             eeee----eeeccceeeeccccCCCCC
Confidence            9776    6687434433333 33543

>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=2.4e-07  Score=75.61  Aligned_cols=77  Identities=16%  Similarity=0.111  Sum_probs=54.1

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++|||+|+|++|++++|. +|+++.+.+.+++        .+++++.+.+.+.+.++++          ..++.+|||+.
T Consensus         3 ~lgiDiGgT~i~~~l~d~-~G~i~~~~~~~~~--------~~~~~~~~~~~i~~~i~~~----------~~~~~~igI~~   63 (119)
T d2aa4a1           3 TLAIDIGGTKLAAALIGA-DGQIRDRRELPTP--------ASQTPEALRDALSALVSPL----------QAHAQRVAIAS   63 (119)
T ss_dssp             EEEEEECSSEEEEEEECT-TCCEEEEEEEECC--------SSCCHHHHHHHHHHHHTTT----------GGGCSEEEEEE
T ss_pred             EEEEEeCcCEEEEEEEcC-CCCEEEeEEEecc--------ccCcHHHHHHHHHHHHHHh----------hccCceEEEEe
Confidence            567999999999999998 9999998887765        2356776665555444433          23577888886


Q ss_pred             CcceeEEeeCCCCCcccccc
Q psy9709         106 QRETTVVWDLNTGEPLYNAI  125 (500)
Q Consensus       106 ~~~~~v~~d~~~g~pl~p~i  125 (500)
                      .+    ++|.+.|....+..
T Consensus        64 pG----~v~~~~~~~~~~~~   79 (119)
T d2aa4a1          64 TG----IIRDGSLLALNPHN   79 (119)
T ss_dssp             SS----EEETTEEECSSGGG
T ss_pred             ee----eEcCCCcEEEccCc
Confidence            66    56774455555433

>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.37  E-value=3.5e-07  Score=74.02  Aligned_cols=76  Identities=16%  Similarity=0.237  Sum_probs=52.8

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      +++||+|+|++|++++|. +|+++.+.+.+++          .+.++    +.+.+.+.++        ..++.+|||+.
T Consensus         3 i~~iDiGgT~i~~~l~d~-~g~i~~~~~~~t~----------~~~~~----~~~~i~~~~~--------~~~i~gIGi~~   59 (114)
T d2gupa1           3 IATIDIGGTGIKFASLTP-DGKILDKTSISTP----------ENLED----LLAWLDQRLS--------EQDYSGIAMSV   59 (114)
T ss_dssp             EEEEEEETTEEEEEEECT-TCCEEEEEEECCC----------SSHHH----HHHHHHHHHT--------TSCCSEEEEEE
T ss_pred             EEEEEeCcccEEEEEEcC-CCCEEEEEEEccc----------ccHHH----HHHHHHHHhh--------hcccceEEEec
Confidence            567999999999999998 9999988776543          12333    3344444432        25789999998


Q ss_pred             CcceeEEeeCCCCCccc-cccccC
Q psy9709         106 QRETTVVWDLNTGEPLY-NAIDKM  128 (500)
Q Consensus       106 ~~~~~v~~d~~~g~pl~-p~i~w~  128 (500)
                      .+    ++|.++|.... |-+.|.
T Consensus        60 pG----~vd~~~g~i~~~~~l~~~   79 (114)
T d2gupa1          60 PG----AVNQETGVIDGFSAVPYI   79 (114)
T ss_dssp             SS----EECTTTCBEESCCSSGGG
T ss_pred             cc----cccCCccEEEcccccCcc
Confidence            77    67986676653 444443

>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Mlc protein
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=8.5e-07  Score=73.21  Aligned_cols=82  Identities=15%  Similarity=0.184  Sum_probs=65.6

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .+++|||+|+++++++++|. +|+++.+.+.+++         ..+++++.+.+.+.+++++++   .+.+..+|.+|||
T Consensus         4 ~~~l~i~i~~~~i~~~l~Dl-~G~~l~~~~~~~~---------~~~~~~~~~~l~~~i~~~l~~---~~~~~~~i~gIgi   70 (129)
T d1z6ra2           4 WHYLSLRISRGEIFLALRDL-SSKLVVEESQELA---------LKDDLPLLDRIISHIDQFFIR---HQKKLERLTSIAI   70 (129)
T ss_dssp             CEEEEEEEETTEEEEEEEET-TCCEEEEEEEECC---------SSCSSCHHHHHHHHHHHHHHH---TGGGCCCEEEEEE
T ss_pred             eEEEEEEECCCEEEEEEEcC-CCCEEEEEEeecc---------ccchhHHHHHHHHHHHHHHHh---cCcccccceeEEE
Confidence            35677999999999999998 9999998777764         234566888888999999887   6667789999999


Q ss_pred             cCCcceeEEeeCCCCCccc
Q psy9709         104 TNQRETTVVWDLNTGEPLY  122 (500)
Q Consensus       104 s~~~~~~v~~d~~~g~pl~  122 (500)
                      +..+    ++|.++|....
T Consensus        71 ~~pG----~v~~~~~~~~~   85 (129)
T d1z6ra2          71 TLPG----IIDTENGIVHR   85 (129)
T ss_dssp             EESS----EEETTTTEEEE
T ss_pred             eeee----eeeecccceec
Confidence            9776    67875455443

>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=3.5e-07  Score=74.54  Aligned_cols=87  Identities=13%  Similarity=0.038  Sum_probs=58.5

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  234 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~  234 (500)
                      +||||+|+|++|++++|.+ |+++...+.+++.        .++++.+.+.+.+.++++.          .++.+|||+.
T Consensus         3 ~lgiDiGgT~i~~~l~d~~-G~i~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~----------~~~~~igI~~   63 (119)
T d2aa4a1           3 TLAIDIGGTKLAAALIGAD-GQIRDRRELPTPA--------SQTPEALRDALSALVSPLQ----------AHAQRVAIAS   63 (119)
T ss_dssp             EEEEEECSSEEEEEEECTT-CCEEEEEEEECCS--------SCCHHHHHHHHHHHHTTTG----------GGCSEEEEEE
T ss_pred             EEEEEeCcCEEEEEEEcCC-CCEEEeEEEeccc--------cCcHHHHHHHHHHHHHHhh----------ccCceEEEEe
Confidence            6899999999999999985 9999887776652        2456666555554443321          3577889988


Q ss_pred             CCceeEEEeCCCCccccc-ce-eeccCCCHHH
Q psy9709         235 QRETTVVWDLNTGEPLYN-AI-VWSDTRADNI  264 (500)
Q Consensus       235 ~~~~~v~~d~~~G~~l~~-~i-~w~D~r~~~~  264 (500)
                      ++    ++|.+.+....+ .+ -|.+..-.+.
T Consensus        64 pG----~v~~~~~~~~~~~~l~~w~~~~l~~~   91 (119)
T d2aa4a1          64 TG----IIRDGSLLALNPHNLGGLLHFPLVKT   91 (119)
T ss_dssp             SS----EEETTEEECSSGGGGGGGTTCCHHHH
T ss_pred             ee----eEcCCCcEEEccCccccccCCCHHHH
Confidence            87    788743444443 33 3766654443

>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.1e-06  Score=69.61  Aligned_cols=71  Identities=13%  Similarity=0.189  Sum_probs=54.2

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCC-CCeeEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR-DDIVTLG  102 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~-~~i~~Ig  102 (500)
                      .+++|||-|+|++|++|+|. +|+++++.+...      ......+.+++++.+.+++++++++   .+++. .+|.+|+
T Consensus         3 ~~~~GIDgGGTkT~~~l~d~-~G~~l~~~~~g~------~N~~~~~~~~~~~~i~~~i~~~l~~---~~~~~~~~i~~i~   72 (117)
T d2ch5a2           3 AIYGGVEGGGTRSEVLLVSE-DGKILAEADGLS------TNHWLIGTDKCVERINEMVNRAKRK---AGVDPLVPLRSLG   72 (117)
T ss_dssp             CEEEEEEECTTCEEEEEEET-TSCEEEEEEECC------CCHHHHCHHHHHHHHHHHHHHHHHH---HTCCTTCCBSEEE
T ss_pred             cEEEEEEcChhhEEEEEECC-CCCEEEEEEcCC------CCcchhhHHHHHHHHHHHHHHHHHH---hcCCCCccccEEE
Confidence            36677999999999999998 999998776432      2334567889999999999999877   44443 3666665


Q ss_pred             Ec
Q psy9709         103 IT  104 (500)
Q Consensus       103 is  104 (500)
                      +.
T Consensus        73 ~G   74 (117)
T d2ch5a2          73 LS   74 (117)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Mlc protein
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=1.4e-06  Score=71.74  Aligned_cols=96  Identities=13%  Similarity=0.125  Sum_probs=70.3

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  232 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v  232 (500)
                      -+++|||+|.++++++++|.. |+++...+.+++.         .+++++.+.+.+.+++++++   .+.+..++.+||+
T Consensus         4 ~~~l~i~i~~~~i~~~l~Dl~-G~~l~~~~~~~~~---------~~~~~~~~~l~~~i~~~l~~---~~~~~~~i~gIgi   70 (129)
T d1z6ra2           4 WHYLSLRISRGEIFLALRDLS-SKLVVEESQELAL---------KDDLPLLDRIISHIDQFFIR---HQKKLERLTSIAI   70 (129)
T ss_dssp             CEEEEEEEETTEEEEEEEETT-CCEEEEEEEECCS---------SCSSCHHHHHHHHHHHHHHH---TGGGCCCEEEEEE
T ss_pred             eEEEEEEECCCEEEEEEEcCC-CCEEEEEEeeccc---------cchhHHHHHHHHHHHHHHHh---cCcccccceeEEE
Confidence            368999999999999999985 9999887776652         34556777788888888775   3456678999999


Q ss_pred             cCCCceeEEEeCCCCcccc-cce-eeccCCCHHHH
Q psy9709         233 TNQRETTVVWDLNTGEPLY-NAI-VWSDTRADNIV  265 (500)
Q Consensus       233 s~~~~~~v~~d~~~G~~l~-~~i-~w~D~r~~~~~  265 (500)
                      +.++    ++|.++|.... |.+ .|.+..-.+.+
T Consensus        71 ~~pG----~v~~~~~~~~~~~~~~~w~~~~l~~~l  101 (129)
T d1z6ra2          71 TLPG----IIDTENGIVHRMPFYEDVKEMPLGEAL  101 (129)
T ss_dssp             EESS----EEETTTTEEEECTTCTTCSSBCHHHHH
T ss_pred             eeee----eeeecccceeccCcchhccCcchHHHH
Confidence            9887    88875455544 333 36665544433

>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.22  E-value=1.2e-06  Score=70.73  Aligned_cols=79  Identities=16%  Similarity=0.223  Sum_probs=54.7

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  234 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~  234 (500)
                      +++||+|+|++|++++|.+ |+++...+.+++          .+.+++.+    .+.+.++        ..++.+||++.
T Consensus         3 i~~iDiGgT~i~~~l~d~~-g~i~~~~~~~t~----------~~~~~~~~----~i~~~~~--------~~~i~gIGi~~   59 (114)
T d2gupa1           3 IATIDIGGTGIKFASLTPD-GKILDKTSISTP----------ENLEDLLA----WLDQRLS--------EQDYSGIAMSV   59 (114)
T ss_dssp             EEEEEEETTEEEEEEECTT-CCEEEEEEECCC----------SSHHHHHH----HHHHHHT--------TSCCSEEEEEE
T ss_pred             EEEEEeCcccEEEEEEcCC-CCEEEEEEEccc----------ccHHHHHH----HHHHHhh--------hcccceEEEec
Confidence            6799999999999999985 999987766543          12333333    3333332        25789999999


Q ss_pred             CCceeEEEeCCCCcccc-cceeeccCC
Q psy9709         235 QRETTVVWDLNTGEPLY-NAIVWSDTR  260 (500)
Q Consensus       235 ~~~~~v~~d~~~G~~l~-~~i~w~D~r  260 (500)
                      +|    ++|+++|.... |.+.|.+..
T Consensus        60 pG----~vd~~~g~i~~~~~l~~~~~~   82 (114)
T d2gupa1          60 PG----AVNQETGVIDGFSAVPYIHGF   82 (114)
T ss_dssp             SS----EECTTTCBEESCCSSGGGSSS
T ss_pred             cc----cccCCccEEEcccccCcccCC
Confidence            88    89986676664 556554443

>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=98.13  E-value=2.2e-06  Score=70.58  Aligned_cols=97  Identities=13%  Similarity=0.136  Sum_probs=62.0

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEE-eeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVS-HSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~-~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      .++||||+|.|++|++++|.+.|+++.. .+.+++.        ...++.+.+.+.+.++.+.++    ......+.+||
T Consensus         2 ~~vlGiDiGgT~i~~~l~d~~~g~i~~~~~~~~t~~--------~~~~~~~~~~i~~~~~~l~~~----~~~~~~~~gIG   69 (129)
T d1woqa1           2 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQ--------PATPESVAEAVALVVAELSAR----PEAPAAGSPVG   69 (129)
T ss_dssp             CCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECCS--------SCCHHHHHHHHHHHHHHHHTS----TTCCCTTCCEE
T ss_pred             CCEEEEEECcceEEEEEEECCCCEEEEEEeeccccc--------CCCHHHHHHHHHHHHHHHHhc----cccccccceee
Confidence            4689999999999999999764676643 3344331        235677777777777766542    22344577888


Q ss_pred             EcCCCceeEEEeCCCCccc-ccc--eeeccCCCHHHHHH
Q psy9709         232 ITNQRETTVVWDLNTGEPL-YNA--IVWSDTRADNIVDQ  267 (500)
Q Consensus       232 vs~~~~~~v~~d~~~G~~l-~~~--i~w~D~r~~~~~~~  267 (500)
                      ++.++    ++|+  +... .+.  ..|.+..-.+.+++
T Consensus        70 i~~pG----~vd~--~~~~~~~~~~~~w~~~~l~~~l~~  102 (129)
T d1woqa1          70 VTFPG----IIQH--GVVHSAANVDKSWLNTDIDALLTA  102 (129)
T ss_dssp             EEESS----CEET--TEECCCTTSCGGGTTCBHHHHHHH
T ss_pred             eccee----eEec--CeEEEecccCCCcccccchhhHHH
Confidence            88776    6786  3333 232  24877665554443

>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=98.05  E-value=6.4e-06  Score=67.65  Aligned_cols=75  Identities=12%  Similarity=0.092  Sum_probs=51.1

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEE-EeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSH-SMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI  103 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~-~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi  103 (500)
                      .++|||+|+|++|++++|.+.|+++.+. +.+++        ...+++.+.+.+.+.++++.++   . ....++.+|||
T Consensus         3 ~vlGiDiGgT~i~~~l~d~~~g~i~~~~~~~~t~--------~~~~~~~~~~~i~~~~~~l~~~---~-~~~~~~~gIGi   70 (129)
T d1woqa1           3 PLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTP--------QPATPESVAEAVALVVAELSAR---P-EAPAAGSPVGV   70 (129)
T ss_dssp             CEEEEEECSSEEEEEEEETTTTEEEEEEEEEECC--------SSCCHHHHHHHHHHHHHHHHTS---T-TCCCTTCCEEE
T ss_pred             CEEEEEECcceEEEEEEECCCCEEEEEEeecccc--------cCCCHHHHHHHHHHHHHHHHhc---c-ccccccceeee
Confidence            4677999999999999997345555432 34433        2346888888888888876543   2 23456788888


Q ss_pred             cCCcceeEEeeC
Q psy9709         104 TNQRETTVVWDL  115 (500)
Q Consensus       104 s~~~~~~v~~d~  115 (500)
                      +..+    ++|+
T Consensus        71 ~~pG----~vd~   78 (129)
T d1woqa1          71 TFPG----IIQH   78 (129)
T ss_dssp             EESS----CEET
T ss_pred             ccee----eEec
Confidence            8655    4576

>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.94  E-value=6.9e-06  Score=66.44  Aligned_cols=30  Identities=13%  Similarity=0.122  Sum_probs=26.4

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeee
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDI   56 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~   56 (500)
                      ++|||+|+|++|++++|. +|+++.+.+.++
T Consensus         2 ~~giDiGgT~i~~~l~d~-~g~i~~~~~~~t   31 (118)
T d1xc3a1           2 LGGIEAGGTKFVCAVGRE-DGTIIDRIEFPT   31 (118)
T ss_dssp             EEEEEECSSEEEEEEECT-TSCEEEEEEEEC
T ss_pred             EEEEEeccCEEEEEEEcC-CCCEEEEEEecC
Confidence            678999999999999998 999998776654

>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.83  E-value=1.3e-05  Score=64.82  Aligned_cols=82  Identities=13%  Similarity=0.088  Sum_probs=50.6

Q ss_pred             EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      +++|||+|+|++|++++|.+ |+++...+.+++           .+++..+.+.+    .++        ..++.+|+++
T Consensus         1 l~~giDiGgT~i~~~l~d~~-g~i~~~~~~~t~-----------~~~~~~~~i~~----~~~--------~~~~~~igi~   56 (118)
T d1xc3a1           1 MLGGIEAGGTKFVCAVGRED-GTIIDRIEFPTK-----------MPDETIEKVIQ----YFS--------QFSLQAIGIG   56 (118)
T ss_dssp             CEEEEEECSSEEEEEEECTT-SCEEEEEEEECC-----------CHHHHHHHHHH----HHT--------TSCCSEEEEE
T ss_pred             CEEEEEeccCEEEEEEEcCC-CCEEEEEEecCC-----------CHHHHHHHHHH----HHh--------hccceeccee
Confidence            37899999999999999985 999977665532           34444433322    222        2356778887


Q ss_pred             CCCceeEEEeCCCC-----ccc-ccceeeccCCCHH
Q psy9709         234 NQRETTVVWDLNTG-----EPL-YNAIVWSDTRADN  263 (500)
Q Consensus       234 ~~~~~~v~~d~~~G-----~~l-~~~i~w~D~r~~~  263 (500)
                      .++    ++|.+.+     ... .|.+-|.+..-.+
T Consensus        57 ~~G----~v~~~~~~~~~g~v~~~~~~~w~~~~l~~   88 (118)
T d1xc3a1          57 SFG----PVDNDKTSQTYGTITATPKAGWRHYPFLQ   88 (118)
T ss_dssp             ECS----SBCCCTTSTTTTSBCCCSSTTTBTCCHHH
T ss_pred             EEe----eeecCCCccceeEEEcCCcccccCcCHHH
Confidence            776    5665322     222 2344576655433

>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=3.7e-05  Score=61.95  Aligned_cols=75  Identities=12%  Similarity=0.151  Sum_probs=54.3

Q ss_pred             cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCC-CCeeE
Q psy9709         151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR-DDIVT  229 (500)
Q Consensus       151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~-~~I~~  229 (500)
                      |.++++|||-|+|++|++++|.+ |+++.+.+....      .......+++++.+.+.+++++++.   +++. .+|.+
T Consensus         1 m~~~~~GIDgGGTkT~~~l~d~~-G~~l~~~~~g~~------N~~~~~~~~~~~~i~~~i~~~l~~~---~~~~~~~i~~   70 (117)
T d2ch5a2           1 MAAIYGGVEGGGTRSEVLLVSED-GKILAEADGLST------NHWLIGTDKCVERINEMVNRAKRKA---GVDPLVPLRS   70 (117)
T ss_dssp             SSCEEEEEEECTTCEEEEEEETT-SCEEEEEEECCC------CHHHHCHHHHHHHHHHHHHHHHHHH---TCCTTCCBSE
T ss_pred             CCcEEEEEEcChhhEEEEEECCC-CCEEEEEEcCCC------CcchhhHHHHHHHHHHHHHHHHHHh---cCCCCccccE
Confidence            56799999999999999999985 999986654321      1123567788888988888888763   3332 46777


Q ss_pred             EEEcCC
Q psy9709         230 LGITNQ  235 (500)
Q Consensus       230 I~vs~~  235 (500)
                      |++...
T Consensus        71 i~~GlA   76 (117)
T d2ch5a2          71 LGLSLS   76 (117)
T ss_dssp             EEEEET
T ss_pred             EEEEee
Confidence            766543

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.52  E-value=5.9e-05  Score=68.93  Aligned_cols=49  Identities=14%  Similarity=0.201  Sum_probs=36.1

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHH
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA   84 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~   84 (500)
                      |++|||+|+|++|++|+|. +|+++.+...++.          .++++..+.+.+.++++
T Consensus         3 ~~lGIDiGGT~~k~~vvd~-~g~il~~~~~~t~----------~~~~~~~~~i~~~l~~~   51 (259)
T d1huxa_           3 YTLGIDVGSTASKCIILKD-GKEIVAKSLVAVG----------TGTSGPARSISEVLENA   51 (259)
T ss_dssp             EEEEEEECSSEEEEEEEET-TTEEEEEEEEECC----------SSCCHHHHHHHHHHHHH
T ss_pred             EEEEEEeCcceEEEEEEcC-CCcEEEEEEecCC----------CCHHHHHHHHHHHHHHc
Confidence            5667999999999999998 9999988776653          23455555555555443

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=0.00019  Score=56.78  Aligned_cols=28  Identities=21%  Similarity=0.209  Sum_probs=22.8

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSH   52 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~   52 (500)
                      +|++++|||+|++|++++|. ++.++...
T Consensus         2 ~~~L~~DIGGTn~r~alv~~-~~~~l~~~   29 (110)
T d1q18a1           2 KYALVGDVGGTNARLALCDI-ASGEISQA   29 (110)
T ss_dssp             CEEEEEEECSSEEEEEEEET-TTCCEEEE
T ss_pred             cEEEEEEECchhEEEEEEEc-CCCeEEEE
Confidence            46778999999999999998 67665543

>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00019  Score=67.86  Aligned_cols=67  Identities=15%  Similarity=0.099  Sum_probs=41.9

Q ss_pred             EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  104 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis  104 (500)
                      |.+++|||+|++|++++|. ++.++...+...+ .         +.+    .+.+.+++++++   .+   .++.+|||+
T Consensus         2 y~L~~DIGGT~ir~glvd~-~~~~i~~~~~~~~-~---------~~~----~~~~~i~~~~~~---~~---~~~~~igI~   60 (319)
T d1sz2a1           2 YALVGDVGGTNARLALCDI-ASGEISQAKTYSG-L---------DYP----SLEAVIRVYLEE---HK---VEVKDGCIA   60 (319)
T ss_dssp             EEEEEEEETTEEEEEEEET-TTCCEEEEEEEEG-G---------GCS----CHHHHHHHHHHH---SC---CCCCEEEEE
T ss_pred             EEEEEEEChhheeeEEEEC-CCCEEEEEEEeCC-C---------CHh----HHHHHHHHHHHh---cC---CCcceEEEE
Confidence            4567999999999999997 6666654443221 1         112    244556666666   43   356777777


Q ss_pred             CCcceeEEeeCC
Q psy9709         105 NQRETTVVWDLN  116 (500)
Q Consensus       105 ~~~~~~v~~d~~  116 (500)
                      .-+    ++|.+
T Consensus        61 ~pG----~vd~~   68 (319)
T d1sz2a1          61 IAC----PITGD   68 (319)
T ss_dssp             ESS----CCCSS
T ss_pred             ccc----CCCCC
Confidence            655    46764

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00065  Score=53.51  Aligned_cols=26  Identities=23%  Similarity=0.210  Sum_probs=22.0

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVV  179 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~  179 (500)
                      +|+|++|||+|++|++++|.+ +..+.
T Consensus         2 ~~~L~~DIGGTn~r~alv~~~-~~~l~   27 (110)
T d1q18a1           2 KYALVGDVGGTNARLALCDIA-SGEIS   27 (110)
T ss_dssp             CEEEEEEECSSEEEEEEEETT-TCCEE
T ss_pred             cEEEEEEECchhEEEEEEEcC-CCeEE
Confidence            689999999999999999975 54443

>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00029  Score=66.51  Aligned_cols=67  Identities=15%  Similarity=0.075  Sum_probs=43.1

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEE-eeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVS-HSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  231 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~-~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~  231 (500)
                      +|+|+||||+|++|++++|.+ +..+.. .+.+.+           +.+.    +.+.+++++++   .+   .++.+||
T Consensus         1 ~y~L~~DIGGT~ir~glvd~~-~~~i~~~~~~~~~-----------~~~~----~~~~i~~~~~~---~~---~~~~~ig   58 (319)
T d1sz2a1           1 KYALVGDVGGTNARLALCDIA-SGEISQAKTYSGL-----------DYPS----LEAVIRVYLEE---HK---VEVKDGC   58 (319)
T ss_dssp             CEEEEEEEETTEEEEEEEETT-TCCEEEEEEEEGG-----------GCSC----HHHHHHHHHHH---SC---CCCCEEE
T ss_pred             CEEEEEEEChhheeeEEEECC-CCEEEEEEEeCCC-----------CHhH----HHHHHHHHHHh---cC---CCcceEE
Confidence            589999999999999999976 544443 332222           1122    33455555554   22   3577788


Q ss_pred             EcCCCceeEEEeCC
Q psy9709         232 ITNQRETTVVWDLN  245 (500)
Q Consensus       232 vs~~~~~~v~~d~~  245 (500)
                      |+.++    ++|.+
T Consensus        59 I~~pG----~vd~~   68 (319)
T d1sz2a1          59 IAIAC----PITGD   68 (319)
T ss_dssp             EEESS----CCCSS
T ss_pred             EEccc----CCCCC
Confidence            88776    67873

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.97  E-value=0.00052  Score=62.27  Aligned_cols=50  Identities=14%  Similarity=0.158  Sum_probs=36.2

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHH
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA  213 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~  213 (500)
                      .|+||||+|+|++|++++|.+ |+++.....+++          .++++..+.+.+.++++
T Consensus         2 M~~lGIDiGGT~~k~~vvd~~-g~il~~~~~~t~----------~~~~~~~~~i~~~l~~~   51 (259)
T d1huxa_           2 IYTLGIDVGSTASKCIILKDG-KEIVAKSLVAVG----------TGTSGPARSISEVLENA   51 (259)
T ss_dssp             CEEEEEEECSSEEEEEEEETT-TEEEEEEEEECC----------SSCCHHHHHHHHHHHHH
T ss_pred             cEEEEEEeCcceEEEEEEcCC-CcEEEEEEecCC----------CCHHHHHHHHHHHHHHc
Confidence            378999999999999999975 999987766553          23445555555554443

>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

Probab=96.28  E-value=0.016  Score=50.54  Aligned_cols=59  Identities=12%  Similarity=0.124  Sum_probs=40.6

Q ss_pred             EEEEEecCCCcceEEEEeCCCC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      .+++||+|+||.|+++++. .|  +.....+..++.  |. .-...+.+++|+.+.+++.+.+++
T Consensus        67 ~fLalDlGGTn~Rv~~V~L-~g~~~~~~~~~~~~~i--p~-~~~~~~~~~lFd~iA~~i~~fl~~  127 (208)
T d1bdga1          67 NFLALDLGGTNYRVLSVTL-EGKGKSPRIQERTYCI--PA-EKMSGSGTELFKYIAETLADFLEN  127 (208)
T ss_dssp             EEEEEEESSSSEEEEEEEE-CC-CCCCEEEEEEECC--CT-TTTTSBHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEecCceEEEEEEEe-cCCCcceEEEEEEeeC--CH-HHccCCHHHHHHHHHHHHHHHHHh
Confidence            3455999999999999997 55  322223333332  11 123446789999999999999877

>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0064  Score=52.99  Aligned_cols=59  Identities=12%  Similarity=0.156  Sum_probs=39.3

Q ss_pred             EEEEEecCCCcceEEEEeCCCCc---EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      .+++||+|+||.|+++++. .|.   .+...+..++.  |. .-..-+.+++++.+.+++.+.+++
T Consensus        62 ~fLalDlGGTn~Rv~~V~L-~g~~~~~~~~~~~~~~i--p~-~~~~~~~~eLFd~iA~~i~~fl~~  123 (205)
T d1czan3          62 DFLALDLGGTNFRVLLVKI-RSGKKRTVEMHNKIYAI--PI-EIMQGTGEELFDHIVSCISDFLDY  123 (205)
T ss_dssp             EEEEEEESSSSEEEEEEEE-ECSTTCEEEEEEEEECC--CH-HHHTSBHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEecCceEEEEEEEe-cCCCCceEEEEeeeecC--CH-HHhcCCHHHHHHHHHHHHHHHHHh
Confidence            3455999999999999986 332   33333333331  10 012235688999999999999876

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.78  E-value=0.0052  Score=55.37  Aligned_cols=25  Identities=16%  Similarity=0.163  Sum_probs=22.0

Q ss_pred             EEEecCCCcceEEEEeCCCCcEEEEE
Q psy9709          27 GVIDEGTRTVRFAIISALTQEEVVSH   52 (500)
Q Consensus        27 ~giDiGtt~~k~~v~d~~~g~~l~~~   52 (500)
                      +|||+|+|++|++++|. +|+++.+.
T Consensus         3 iGIDiGGT~ik~~lvd~-~g~i~~~~   27 (267)
T d2ewsa1           3 VGIDAGGTLIKIVQEQD-NQRTFKTE   27 (267)
T ss_dssp             EEEEECSSEEEEEEECS-SCEEEEEE
T ss_pred             EEEEEChhhEEEEEEeC-CCcEEEEE
Confidence            46999999999999998 89988653

>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]

Probab=95.64  E-value=0.029  Score=48.77  Aligned_cols=59  Identities=15%  Similarity=0.268  Sum_probs=40.3

Q ss_pred             EEEEecCCCcceEEEEeCCCCc-EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          26 IGVIDEGTRTVRFAIISALTQE-EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~-~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      +++||+|+||.|+++++. .|+ .....+..+..  |..--...+.+++|+.+.+++.+.+++
T Consensus        65 flalDlGGTnlRv~~V~L-~g~~~~~~~~~~~~i--p~~~~~~~~~~~lFd~iA~~i~~f~~e  124 (207)
T d1ig8a1          65 FLAIDLGGTNLRVVLVKL-GGDRTFDTTQSKYRL--PDAMRTTQNPDELWEFIADSLKAFIDE  124 (207)
T ss_dssp             EEEEEECSSEEEEEEEEE-ESSSCEEEEEEEEEC--CTTGGGCSCTHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCceEEEEEEEE-cCCCceEEeeeeeeC--CHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            455999999999999997 663 33333333331  221112346788999999999999876

>d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.016  Score=50.58  Aligned_cols=59  Identities=17%  Similarity=0.215  Sum_probs=39.4

Q ss_pred             EEEEEecCCCcceEEEEeCCCC---cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQ---EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g---~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      .+++||+|+||.|++++.. .|   ..+...+..++.  |. .-.....+++++.+.+++.+.+++
T Consensus        64 ~flalDlGGTn~Rv~~V~L-~g~~~~~~~~~~~~~~i--p~-~~~~~~~~~lFd~IA~~i~~fl~~  125 (207)
T d1czan1          64 DFIALDLGGSSFRILRVQV-NHEKNQNVHMESEVYDT--PE-NIVHGSGSQLFDHVAECLGDFMEK  125 (207)
T ss_dssp             EEEEEEESSSSEEEEEEEE-EEETTEEEEEEEEEECC--CH-HHHSSBHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecCCceEEEEEEEe-CCCCCccEEEEEEeecC--CH-HHhcCCHHHHHHHHHHHHHHHHHh
Confidence            3455999999999999986 44   233333333331  11 112345788999999999998876

>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: butyrate kinase 2
species: Thermotoga maritima [TaxId: 2336]

Probab=95.03  E-value=0.01  Score=50.37  Aligned_cols=72  Identities=15%  Similarity=0.176  Sum_probs=42.0

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      |++|..|+||+|.+|||.  .+.+......+.......   .....+-.+.-.+++.+.+++   .+++.++|.+||--.
T Consensus         4 ILViN~GSSSlK~alf~~--~~~~~~~~i~~~~~e~~~---~~~i~d~~~~~~~~i~~~L~~---~~~~~~~i~avghRv   75 (172)
T d1saza1           4 ILTINPGSTSTKLSIFED--ERMVKMQNFSHSPDELGR---FQKILDQLEFREKIARQFVEE---TGYSLSSFSAFVSRG   75 (172)
T ss_dssp             EEEEEECSSEEEEEEEET--TEEEEEEEEECCHHHHHT---CSSGGGGHHHHHHHHHHHHHT---TTCCGGGCSEEEEEC
T ss_pred             EEEEcCChHhheEEEEeC--CCceeEEEEEEccccccc---cCcccchHHHHHHHHHHHHHH---cCCChhcCeEEEECc
Confidence            677999999999999995  456666655443111000   001111122223444444444   777778899987664

>d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Glucokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.051  Score=47.10  Aligned_cols=59  Identities=14%  Similarity=0.191  Sum_probs=39.3

Q ss_pred             EEEEecCCCcceEEEEeCCCCc----EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709          26 IGVIDEGTRTVRFAIISALTQE----EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   87 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~----~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~   87 (500)
                      +++||+|+||.|+++++...++    .+...+..++.  |.. -.....+++++.+.+++.+.+++
T Consensus        61 flalDlGGTn~Rv~~V~L~~~~~~~~~~~~~~~~~~i--p~~-~~~~t~~~LFd~iA~~i~~fl~~  123 (205)
T d1v4sa1          61 FLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSI--PED-AMTGTAEMLFDYISECISDFLDK  123 (205)
T ss_dssp             EEEEEESSSEEEEEEEEECCCSSSCCEEEEEEEEEEC--CST-TTSSBHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEecCCceEEEEEEEeCCCCCCCceeEEEeecccC--Chh-hccCCHHHHHHHHHHHHHHHHHh
Confidence            4559999999999999972221    12222333332  211 23446788999999999999875

>d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hypothetical protein PG1100
species: Porphyromonas gingivalis [TaxId: 837]

Probab=94.81  E-value=0.026  Score=43.66  Aligned_cols=68  Identities=18%  Similarity=0.114  Sum_probs=44.6

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++++|-|+|.+++++.|  +|+++.+.+..      ......++.+++.+.+.+.+.+.+.      ...++|..|.+..
T Consensus         2 ilivDgGgTKT~~vl~d--~g~~i~~~~t~------g~Np~~~~~~~~~~~l~~~~~~~l~------~~~~~i~~i~~g~   67 (107)
T d1zbsa2           2 ILIGDSGSTKTDWCIAK--EGKSLGRFQTS------GINPFQQDRNEIDTALRSEVLPAIG------QKASSIRAVYFYG   67 (107)
T ss_dssp             EEEEEECSSEEEEEEEE--TTEEEEEEEEE------CCCTTTSCHHHHHHHHTTTTHHHHT------TSTTTCCEEEEEE
T ss_pred             EEEEEeccccEEEEEEC--CCCeEEEEecC------CcCcccCCHHHHHHHHHHHHHHHHh------ccccCCcEEEEEe
Confidence            55699999999998887  48888765422      1122456778888777765544332      2356788886665


Q ss_pred             Cc
Q psy9709         106 QR  107 (500)
Q Consensus       106 ~~  107 (500)
                      -+
T Consensus        68 AG   69 (107)
T d1zbsa2          68 AG   69 (107)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

>d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.77  E-value=0.072  Score=45.67  Aligned_cols=78  Identities=18%  Similarity=0.216  Sum_probs=53.8

Q ss_pred             EEEEEecCCCcceEEEEeCCCC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          25 LIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        25 ~i~giDiGtt~~k~~v~d~~~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      |+.+||+||+++|++++...++  ++++....+..-.  ..| .-.|.+..-+++.++++++-++   ++........++
T Consensus         3 ~~~aiDIGs~kI~~~v~~~~~~~~~iig~~~~~s~Gi--~~G-~I~d~~~~~~~I~~~I~~aE~~---a~~~i~~~v~v~   76 (193)
T d1e4ft1           3 FYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGL--DEG-EIKDAIAFKESVNTLLKELEEQ---LQKSLRSDFVIS   76 (193)
T ss_dssp             EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSE--ETT-EESCHHHHHHHHHHHHHHHHHH---HTSCCCSCEEEE
T ss_pred             EEEEEEcCCCEEEEEEEEEcCCcEEEEEEEEEecCCc--cCC-eEEeHHHHHHHHHHHHHHHHHH---cCCCeeeEEEEE
Confidence            4566999999999998865344  5566666555422  123 5569999999999999988777   666554444566


Q ss_pred             EcCCcc
Q psy9709         103 ITNQRE  108 (500)
Q Consensus       103 is~~~~  108 (500)
                      +++...
T Consensus        77 ~~~~~~   82 (193)
T d1e4ft1          77 FSSVSF   82 (193)
T ss_dssp             ECCTTC
T ss_pred             EcCcee
Confidence            665543

>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.73  E-value=0.039  Score=44.02  Aligned_cols=78  Identities=10%  Similarity=0.089  Sum_probs=46.0

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCcc---ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWA---EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG  102 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~---e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig  102 (500)
                      +++||+|+.++|..+++..++++-...+...+... ..+-.   ..++ +-.+.+.+++++..+.+++.+  .+++.++|
T Consensus         5 iavIDIGSNsirl~I~~~~~~~~~~l~~~~~~~~L-g~~~~~~g~ls~-~~i~~~~~~l~~f~~~~~~~~--v~~~~~va   80 (126)
T d1t6ca1           5 VASIDIGSYSVRLTIAQIKDGKLSIILERGRITSL-GTKVKETGRLQE-DRIEETIQVLKEYKKLIDEFK--VERVKAVA   80 (126)
T ss_dssp             EEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCT-TTTHHHHSSCCH-HHHHHHHHHHHHHHHHHHHTT--CSEEEEEE
T ss_pred             EEEEEEccceEEEEEEEecCCcceeeeeeeEEEEc-ccCccccCCCCH-HHHHHHHHHHHHHHHHHHhcC--ccceEEeh
Confidence            67899999999999999733333222222222211 12211   2233 345566666776665544454  46799998


Q ss_pred             EcCCc
Q psy9709         103 ITNQR  107 (500)
Q Consensus       103 is~~~  107 (500)
                      -++.|
T Consensus        81 TsA~R   85 (126)
T d1t6ca1          81 TEAIR   85 (126)
T ss_dssp             CHHHH
T ss_pred             hHHHH
Confidence            88777

>d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.15  E-value=0.12  Score=44.29  Aligned_cols=78  Identities=19%  Similarity=0.235  Sum_probs=51.6

Q ss_pred             CEEEEEeccCCCceEEEEeCCCC--eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      .|+.+||+||+.+|++++...++  ++++....+..  .-+.| ...|.+..-+++.++++++-++.   +........+
T Consensus         2 ~~~~aiDIGs~kI~~~v~~~~~~~~~iig~~~~~s~--Gi~~G-~I~d~~~~~~~I~~~I~~aE~~a---~~~i~~~v~v   75 (193)
T d1e4ft1           2 VFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSR--GLDEG-EIKDAIAFKESVNTLLKELEEQL---QKSLRSDFVI   75 (193)
T ss_dssp             EEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECC--SEETT-EESCHHHHHHHHHHHHHHHHHHH---TSCCCSCEEE
T ss_pred             cEEEEEEcCCCEEEEEEEEEcCCcEEEEEEEEEecC--CccCC-eEEeHHHHHHHHHHHHHHHHHHc---CCCeeeEEEE
Confidence            37899999999999998876555  45566555432  11233 46788888888888888876653   4333333345


Q ss_pred             EEcCCC
Q psy9709         231 GITNQR  236 (500)
Q Consensus       231 ~vs~~~  236 (500)
                      ++++..
T Consensus        76 ~~~~~~   81 (193)
T d1e4ft1          76 SFSSVS   81 (193)
T ss_dssp             EECCTT
T ss_pred             EEcCce
Confidence            665544

>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]

Probab=94.09  E-value=0.047  Score=47.40  Aligned_cols=60  Identities=15%  Similarity=0.210  Sum_probs=40.2

Q ss_pred             EEEEEeccCCCceEEEEeCCCC-eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709         154 LIGVIDEGTRTVRFAIISALTQ-EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK  216 (500)
Q Consensus       154 ~~lgIDiGTts~k~~l~d~~~G-~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~  216 (500)
                      -+++||+|+|+.|+++++.. | +.....+..+..  |..-....+.+++|+.+.+|+.+.+++
T Consensus        64 ~flalDlGGTnlRv~~V~L~-g~~~~~~~~~~~~i--p~~~~~~~~~~~lFd~iA~~i~~f~~e  124 (207)
T d1ig8a1          64 DFLAIDLGGTNLRVVLVKLG-GDRTFDTTQSKYRL--PDAMRTTQNPDELWEFIADSLKAFIDE  124 (207)
T ss_dssp             EEEEEEECSSEEEEEEEEEE-SSSCEEEEEEEEEC--CTTGGGCSCTHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEecCceEEEEEEEEc-CCCceEEeeeeeeC--CHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999985 5 333222222221  111111235788999999999999875

>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Tex RuvX-like domain-like
domain: Transcriptional accessory factor Tex
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.94  E-value=0.071  Score=43.65  Aligned_cols=30  Identities=20%  Similarity=0.246  Sum_probs=25.7

Q ss_pred             cEEEEEecC-CCcceEEEEeCCCCcEEEEEEe
Q psy9709          24 PLIGVIDEG-TRTVRFAIISALTQEEVVSHSM   54 (500)
Q Consensus        24 ~~i~giDiG-tt~~k~~v~d~~~g~~l~~~~~   54 (500)
                      ..|+|||=| -|++|++++|. +|+++.....
T Consensus         5 ~~vlg~DPg~r~gck~AvlD~-~G~vld~~vi   35 (149)
T d3bzka5           5 RATLGLDPGLRTGVKVAVVDA-TGKLLDTATV   35 (149)
T ss_dssp             CCEEEEECCSTTCEEEEEECT-TSCEEEEEEE
T ss_pred             ceEEEECCCcccccEEEEECC-CCCEEEEEEE
Confidence            457889999 89999999998 9999986544

>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.85  E-value=0.048  Score=43.43  Aligned_cols=75  Identities=11%  Similarity=0.148  Sum_probs=42.0

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEE--EEeeeeccccc--CCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEV--VSHSMDISTIS--PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi--~~~~~~~~~~~--~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      +.+||+||.++|..+++.+++++.  ...+.+...-.  ...|  ..++ +-.+.+.+++++..+.+.+.+  .+++.++
T Consensus         5 iavIDIGSNsirl~I~~~~~~~~~~l~~~~~~~~Lg~~~~~~g--~ls~-~~i~~~~~~l~~f~~~~~~~~--v~~~~~v   79 (126)
T d1t6ca1           5 VASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETG--RLQE-DRIEETIQVLKEYKKLIDEFK--VERVKAV   79 (126)
T ss_dssp             EEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHS--SCCH-HHHHHHHHHHHHHHHHHHHTT--CSEEEEE
T ss_pred             EEEEEEccceEEEEEEEecCCcceeeeeeeEEEEcccCccccC--CCCH-HHHHHHHHHHHHHHHHHHhcC--ccceEEe
Confidence            577999999999999998655433  33333322110  0112  1222 334455566666665554443  4567777


Q ss_pred             EEcC
Q psy9709         231 GITN  234 (500)
Q Consensus       231 ~vs~  234 (500)
                      +.++
T Consensus        80 aTsA   83 (126)
T d1t6ca1          80 ATEA   83 (126)
T ss_dssp             ECHH
T ss_pred             hhHH
Confidence            6543

>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: Propionate kinase
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.73  E-value=0.11  Score=44.38  Aligned_cols=31  Identities=19%  Similarity=0.483  Sum_probs=25.4

Q ss_pred             cEEEEEecCCCcceEEEEeCCCCcEEEEEEe
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSM   54 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~   54 (500)
                      ++|++|..|+||+|..|||..+.+++.+...
T Consensus         2 plILviN~GSSSlK~~lf~~~~~~~l~~g~~   32 (189)
T d2e1za1           2 PVVLVINCGSSSIKFSVLDVATCDVLMAGIA   32 (189)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTCCEEEEEEE
T ss_pred             CEEEEEcCCchhheEEEEeCCCCcEEEEeee
Confidence            4789999999999999999656677766554

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.08  E-value=0.03  Score=50.04  Aligned_cols=25  Identities=16%  Similarity=0.117  Sum_probs=21.9

Q ss_pred             EEEeccCCCceEEEEeCCCCeEEEEe
Q psy9709         156 GVIDEGTRTVRFAIISALTQEEVVSH  181 (500)
Q Consensus       156 lgIDiGTts~k~~l~d~~~G~vi~~~  181 (500)
                      +|||+|+|++|++++|.+ |+++.+.
T Consensus         3 iGIDiGGT~ik~~lvd~~-g~i~~~~   27 (267)
T d2ewsa1           3 VGIDAGGTLIKIVQEQDN-QRTFKTE   27 (267)
T ss_dssp             EEEEECSSEEEEEEECSS-CEEEEEE
T ss_pred             EEEEEChhhEEEEEEeCC-CcEEEEE
Confidence            799999999999999975 9887653

>d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Escherichia coli [TaxId: 562]

Probab=92.69  E-value=0.12  Score=40.80  Aligned_cols=77  Identities=12%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             EEEEecCCCcceEEEEeCCCCc--EEEEEEeeeeeec--CCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          26 IGVIDEGTRTVRFAIISALTQE--EVVSHSMDISTIS--PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~--~l~~~~~~~~~~~--~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      +++||+|+-++|..+++..++.  ++...+.++.+-.  ...|  ..+ ++-.+.+.+++++..+.+++.  ..+++.++
T Consensus         2 ~A~IDiGSNsirl~I~~~~~~~~~~l~~~~~~~rLg~~~~~~g--~l~-~~~i~~~~~~l~~f~~~~~~~--~v~~i~~v   76 (124)
T d1u6za2           2 FAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDN--MLS-EEAMTRGLNCLSLFAERLQGF--SPASVCIV   76 (124)
T ss_dssp             EEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTC--CBC-HHHHHHHHHHHHHHHHHTTTC--CGGGEEEE
T ss_pred             EEEEEEccceEEEEEEEecCCCeeEeeeeeEEeehhhhccccC--CcC-HHHHHHHHHHHHHHHHHHHhc--Ccceehhh
Confidence            3569999999999999973443  3333333332211  1122  222 335556667777776654333  45689999


Q ss_pred             EEcCCc
Q psy9709         102 GITNQR  107 (500)
Q Consensus       102 gis~~~  107 (500)
                      |-++.|
T Consensus        77 aTsA~R   82 (124)
T d1u6za2          77 GTHTLR   82 (124)
T ss_dssp             ECHHHH
T ss_pred             HHHHHH
Confidence            888776

>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

Probab=92.50  E-value=0.33  Score=41.74  Aligned_cols=60  Identities=13%  Similarity=0.122  Sum_probs=40.2

Q ss_pred             CEEEEEeccCCCceEEEEeCCCC--eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK  216 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~  216 (500)
                      .-+++||+|+|+.|+++++.. |  +.....+..++.  |.. ....+.+++++.+.+|+.+.+++
T Consensus        66 G~fLalDlGGTn~Rv~~V~L~-g~~~~~~~~~~~~~i--p~~-~~~~~~~~lFd~iA~~i~~fl~~  127 (208)
T d1bdga1          66 GNFLALDLGGTNYRVLSVTLE-GKGKSPRIQERTYCI--PAE-KMSGSGTELFKYIAETLADFLEN  127 (208)
T ss_dssp             EEEEEEEESSSSEEEEEEEEC-C-CCCCEEEEEEECC--CTT-TTTSBHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEecCceEEEEEEEec-CCCcceEEEEEEeeC--CHH-HccCCHHHHHHHHHHHHHHHHHh
Confidence            357899999999999999985 4  322222222321  111 11235679999999999998875

>d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.087  Score=41.72  Aligned_cols=75  Identities=11%  Similarity=0.150  Sum_probs=42.7

Q ss_pred             EEEEeccCCCceEEEEeCCCCeE--EEEeeeecccc--cCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEE--VVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~v--i~~~~~~~~~~--~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      +.+||+||.++|..+++..++..  +...+.+...-  ....|  ..+ ++-.+.+.+++++..+.+...  +.+.+.++
T Consensus         2 ~A~IDiGSNsirl~I~~~~~~~~~~l~~~~~~~rLg~~~~~~g--~l~-~~~i~~~~~~l~~f~~~~~~~--~v~~i~~v   76 (124)
T d1u6za2           2 FAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDN--MLS-EEAMTRGLNCLSLFAERLQGF--SPASVCIV   76 (124)
T ss_dssp             EEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTC--CBC-HHHHHHHHHHHHHHHHHTTTC--CGGGEEEE
T ss_pred             EEEEEEccceEEEEEEEecCCCeeEeeeeeEEeehhhhccccC--CcC-HHHHHHHHHHHHHHHHHHHhc--Ccceehhh
Confidence            46799999999999999765543  33333333321  22333  222 234445566777766654332  34567666


Q ss_pred             EEcC
Q psy9709         231 GITN  234 (500)
Q Consensus       231 ~vs~  234 (500)
                      +.++
T Consensus        77 aTsA   80 (124)
T d1u6za2          77 GTHT   80 (124)
T ss_dssp             ECHH
T ss_pred             HHHH
Confidence            6543

>d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Thermotoga maritima [TaxId: 2336]

Probab=92.00  E-value=0.11  Score=40.45  Aligned_cols=61  Identities=13%  Similarity=0.205  Sum_probs=38.9

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  105 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~  105 (500)
                      ++.||+|-|++|.++|+.  ++++...+.++.        ....++++...+.....          .....+..+.+++
T Consensus         2 ~L~IDIGNT~ik~~l~~~--~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~ss   61 (118)
T d3bexa1           2 YLLVDVGNTHSVFSITED--GKTFRRWRLSTG--------VFQTEDELFSHLHPLLG----------DAMREIKGIGVAS   61 (118)
T ss_dssp             EEEEEECSSEEEEEEESS--SSSCEEEEEECC--------TTCCHHHHHHHHHHHHG----------GGGGGEEEEEEEE
T ss_pred             EEEEEECCCeEEEEEEEC--CEEEEEEEEccC--------ccccHHHHHHHHHHHHh----------hhhcccccceeec
Confidence            345999999999999984  677777666554        22345666544433321          1234677777775


Q ss_pred             C
Q psy9709         106 Q  106 (500)
Q Consensus       106 ~  106 (500)
                      .
T Consensus        62 V   62 (118)
T d3bexa1          62 V   62 (118)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hypothetical protein PG1100
species: Porphyromonas gingivalis [TaxId: 837]

Probab=91.80  E-value=0.22  Score=38.08  Aligned_cols=68  Identities=22%  Similarity=0.240  Sum_probs=42.8

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN  234 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~  234 (500)
                      +|++|-|+|.+++++.| + |+++.+.+.. + ..|    ..++.+++.+.+.+.+.+.+      ....++|..|.+..
T Consensus         2 ilivDgGgTKT~~vl~d-~-g~~i~~~~t~-g-~Np----~~~~~~~~~~~l~~~~~~~l------~~~~~~i~~i~~g~   67 (107)
T d1zbsa2           2 ILIGDSGSTKTDWCIAK-E-GKSLGRFQTS-G-INP----FQQDRNEIDTALRSEVLPAI------GQKASSIRAVYFYG   67 (107)
T ss_dssp             EEEEEECSSEEEEEEEE-T-TEEEEEEEEE-C-CCT----TTSCHHHHHHHHTTTTHHHH------TTSTTTCCEEEEEE
T ss_pred             EEEEEeccccEEEEEEC-C-CCeEEEEecC-C-cCc----ccCCHHHHHHHHHHHHHHHH------hccccCCcEEEEEe
Confidence            57899999999999988 5 8888654332 1 111    13556666666655443332      12356788887765


Q ss_pred             CC
Q psy9709         235 QR  236 (500)
Q Consensus       235 ~~  236 (500)
                      .|
T Consensus        68 AG   69 (107)
T d1zbsa2          68 AG   69 (107)
T ss_dssp             TT
T ss_pred             cC
Confidence            55

>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.54  E-value=0.19  Score=44.40  Aligned_cols=71  Identities=24%  Similarity=0.333  Sum_probs=47.1

Q ss_pred             cEEEEEecCCCcceEEEEeCCCC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709          24 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  101 (500)
Q Consensus        24 ~~i~giDiGtt~~k~~v~d~~~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I  101 (500)
                      +++.|||+||+++++++....++  ++++....+..-.  + | .-.|.+.    +.+++++++++   ++....+|..|
T Consensus         1 pii~glDIGtski~~~v~~~~~~~~~ilg~g~~~s~Gi--K-G-~I~ni~~----~~~aI~~av~~---A~~~~~~i~~i   69 (239)
T d1nbwa2           1 PLIAGIDIGNATTEVALASDYPQARAFVASGIVATTGM--K-G-TRDNIAG----TLAALEQALAK---TPWSMSDVSRI   69 (239)
T ss_dssp             CEEEEEEECSSEEEEEEEECBTTBCCCCEEEEEECCSS--T-T-SGGGHHH----HHHHHHHHHTT---SSCCGGGEEEE
T ss_pred             CEEEEEEcCCCeEEEEEEEEcCCCEEEEEEEeecCCCC--c-c-eEECHHH----HHHHHHHHHHH---hccccccceEE
Confidence            46788999999999999976322  5677777666533  2 4 4456665    44555666555   66666777766


Q ss_pred             EEcC
Q psy9709         102 GITN  105 (500)
Q Consensus       102 gis~  105 (500)
                      -+..
T Consensus        70 ~in~   73 (239)
T d1nbwa2          70 YLNE   73 (239)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            5553

>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.24  Score=42.64  Aligned_cols=75  Identities=11%  Similarity=0.141  Sum_probs=46.2

Q ss_pred             CEEEEEeccCCCceEEEEeCCCC--eEEEEeee--ecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCC-CCCe
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSM--DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS-RDDI  227 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G--~vi~~~~~--~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~-~~~I  227 (500)
                      .-+++||+|+|+.|+++++...+  +.+...+.  +.|...     ..-..+++++.+.+|+.+.++..   +.. ..-.
T Consensus        61 G~fLalDlGGTn~Rv~~V~L~g~~~~~~~~~~~~~~ip~~~-----~~~~~~eLFd~iA~~i~~fl~~~---~~~~~~~~  132 (205)
T d1czan3          61 GDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEI-----MQGTGEELFDHIVSCISDFLDYM---GIKGPRMP  132 (205)
T ss_dssp             EEEEEEEESSSSEEEEEEEEECSTTCEEEEEEEEECCCHHH-----HTSBHHHHHHHHHHHHHHHHHHH---TCCSSCCE
T ss_pred             ceEEEEEecCceEEEEEEEecCCCCceEEEEeeeecCCHHH-----hcCCHHHHHHHHHHHHHHHHHhc---CCCCCccc
Confidence            45789999999999999887422  23333333  232111     11245789999999999998753   222 2234


Q ss_pred             eEEEEcCC
Q psy9709         228 VTLGITNQ  235 (500)
Q Consensus       228 ~~I~vs~~  235 (500)
                      .|+.+|-+
T Consensus       133 lGfTFSFP  140 (205)
T d1czan3         133 LGFTFSFP  140 (205)
T ss_dssp             EEEEECSC
T ss_pred             ceEEEece
Confidence            45555544

>d1g99a1 c.55.1.2 (A:1-197) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: Acetate kinase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=91.26  E-value=0.11  Score=44.79  Aligned_cols=29  Identities=14%  Similarity=0.361  Sum_probs=23.7

Q ss_pred             EEEEecCCCcceEEEEeCCCCcEEEEEEe
Q psy9709          26 IGVIDEGTRTVRFAIISALTQEEVVSHSM   54 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~   54 (500)
                      |++|..|+||+|.+|||..+.+++.+...
T Consensus         3 ILViN~GSSS~K~alf~~~~~~~l~~g~~   31 (197)
T d1g99a1           3 VLVINAGSSSLKYQLIDMTNESALAVGLC   31 (197)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEcCChHhheeEEEECCCCcEEEEeEE
Confidence            67799999999999999646677766654

>d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.79  E-value=0.15  Score=43.99  Aligned_cols=77  Identities=14%  Similarity=0.106  Sum_probs=46.3

Q ss_pred             CEEEEEeccCCCceEEEEeCCCC---eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQ---EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT  229 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G---~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~  229 (500)
                      .-+++||+|+|+.|++++... |   ..+...+..++.  |.. -.....+++++.+.+|+.+.+++..  .-+..-..|
T Consensus        63 G~flalDlGGTn~Rv~~V~L~-g~~~~~~~~~~~~~~i--p~~-~~~~~~~~lFd~IA~~i~~fl~~~~--~~~~~l~lG  136 (207)
T d1czan1          63 GDFIALDLGGSSFRILRVQVN-HEKNQNVHMESEVYDT--PEN-IVHGSGSQLFDHVAECLGDFMEKRK--IKDKKLPVG  136 (207)
T ss_dssp             EEEEEEEESSSSEEEEEEEEE-EETTEEEEEEEEEECC--CHH-HHSSBHHHHHHHHHHHHHHHHHHHT--CTTSCCCEE
T ss_pred             ceEEEEecCCceEEEEEEEeC-CCCCccEEEEEEeecC--CHH-HhcCCHHHHHHHHHHHHHHHHHhcC--cCCCCCccE
Confidence            457899999999999998863 3   233322222321  100 0123567899999999999887531  112233456


Q ss_pred             EEEcCC
Q psy9709         230 LGITNQ  235 (500)
Q Consensus       230 I~vs~~  235 (500)
                      +.+|-+
T Consensus       137 fTFSFP  142 (207)
T d1czan1         137 FTFSFP  142 (207)
T ss_dssp             EEECSC
T ss_pred             EEEcCe
Confidence            666543

>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Tex RuvX-like domain-like
domain: Transcriptional accessory factor Tex
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.34  E-value=0.44  Score=38.69  Aligned_cols=32  Identities=16%  Similarity=0.162  Sum_probs=26.7

Q ss_pred             cCCEEEEEecc-CCCceEEEEeCCCCeEEEEeee
Q psy9709         151 QVPLIGVIDEG-TRTVRFAIISALTQEEVVSHSM  183 (500)
Q Consensus       151 ~~~~~lgIDiG-Tts~k~~l~d~~~G~vi~~~~~  183 (500)
                      ..+.+||||=| .+.+|.+++|.+ |+++.....
T Consensus         3 ~~~~vlg~DPg~r~gck~AvlD~~-G~vld~~vi   35 (149)
T d3bzka5           3 GPRATLGLDPGLRTGVKVAVVDAT-GKLLDTATV   35 (149)
T ss_dssp             CSCCEEEEECCSTTCEEEEEECTT-SCEEEEEEE
T ss_pred             CCceEEEECCCcccccEEEEECCC-CCEEEEEEE
Confidence            35678999999 899999999985 999976543

>d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Glucokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.17  Score=43.59  Aligned_cols=77  Identities=12%  Similarity=0.144  Sum_probs=46.8

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCe----EEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCC-CCCCe
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQE----EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL-SRDDI  227 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~----vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~-~~~~I  227 (500)
                      .-+++||+|+|+.|+++++...++    .+......++.  |.. ......+++++.+.+|+.+.+++   .+. ...-.
T Consensus        59 G~flalDlGGTn~Rv~~V~L~~~~~~~~~~~~~~~~~~i--p~~-~~~~t~~~LFd~iA~~i~~fl~~---~~~~~~~lp  132 (205)
T d1v4sa1          59 GDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSI--PED-AMTGTAEMLFDYISECISDFLDK---HQMKHKKLP  132 (205)
T ss_dssp             EEEEEEEESSSEEEEEEEEECCCSSSCCEEEEEEEEEEC--CST-TTSSBHHHHHHHHHHHHHHHHHT---TTCTTCCCE
T ss_pred             ceEEEEecCCceEEEEEEEeCCCCCCCceeEEEeecccC--Chh-hccCCHHHHHHHHHHHHHHHHHh---hCCCCCccc
Confidence            357899999999999999974331    22222222321  111 11235678999999999999874   222 22234


Q ss_pred             eEEEEcCC
Q psy9709         228 VTLGITNQ  235 (500)
Q Consensus       228 ~~I~vs~~  235 (500)
                      .|+.+|-+
T Consensus       133 lGfTFSFP  140 (205)
T d1v4sa1         133 LGFTFSFP  140 (205)
T ss_dssp             EEEEECSC
T ss_pred             cEEEEcCc
Confidence            56666654

>d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Thermotoga maritima [TaxId: 2336]

Probab=87.61  E-value=0.18  Score=39.15  Aligned_cols=30  Identities=13%  Similarity=0.199  Sum_probs=23.2

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecc
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDIS  186 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~  186 (500)
                      .|.||||.|++|.++|+.  ++++...+..+.
T Consensus         2 ~L~IDIGNT~ik~~l~~~--~~l~~~~~~~~~   31 (118)
T d3bexa1           2 YLLVDVGNTHSVFSITED--GKTFRRWRLSTG   31 (118)
T ss_dssp             EEEEEECSSEEEEEEESS--SSSCEEEEEECC
T ss_pred             EEEEEECCCeEEEEEEEC--CEEEEEEEEccC
Confidence            578999999999999983  677766555443

>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.39  E-value=0.37  Score=42.39  Aligned_cols=73  Identities=23%  Similarity=0.318  Sum_probs=46.5

Q ss_pred             CEEEEEeccCCCceEEEEeCCCC--eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL  230 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I  230 (500)
                      +++.||||||+++++++...+++  ++++....+..-+  + | ...|.+..    .+++++++++   ++...++|..|
T Consensus         1 pii~glDIGtski~~~v~~~~~~~~~ilg~g~~~s~Gi--K-G-~I~ni~~~----~~aI~~av~~---A~~~~~~i~~i   69 (239)
T d1nbwa2           1 PLIAGIDIGNATTEVALASDYPQARAFVASGIVATTGM--K-G-TRDNIAGT----LAALEQALAK---TPWSMSDVSRI   69 (239)
T ss_dssp             CEEEEEEECSSEEEEEEEECBTTBCCCCEEEEEECCSS--T-T-SGGGHHHH----HHHHHHHHTT---SSCCGGGEEEE
T ss_pred             CEEEEEEcCCCeEEEEEEEEcCCCEEEEEEEeecCCCC--c-c-eEECHHHH----HHHHHHHHHH---hccccccceEE
Confidence            46889999999999999876544  4556665554322  2 4 24455544    4455555543   45566778777


Q ss_pred             EEcCCC
Q psy9709         231 GITNQR  236 (500)
Q Consensus       231 ~vs~~~  236 (500)
                      -+....
T Consensus        70 ~in~a~   75 (239)
T d1nbwa2          70 YLNEAA   75 (239)
T ss_dssp             EEEECC
T ss_pred             EecCCc
Confidence            776544

>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: Propionate kinase
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.23  E-value=0.86  Score=38.44  Aligned_cols=29  Identities=21%  Similarity=0.544  Sum_probs=24.3

Q ss_pred             CEEEEEeccCCCceEEEEeCCCCeEEEEe
Q psy9709         153 PLIGVIDEGTRTVRFAIISALTQEEVVSH  181 (500)
Q Consensus       153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~  181 (500)
                      +++|+|..|+||+|..+||.++.+++...
T Consensus         2 plILviN~GSSSlK~~lf~~~~~~~l~~g   30 (189)
T d2e1za1           2 PVVLVINCGSSSIKFSVLDVATCDVLMAG   30 (189)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTCCEEEEE
T ss_pred             CEEEEEcCCchhheEEEEeCCCCcEEEEe
Confidence            57899999999999999997767776543

>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: butyrate kinase 2
species: Thermotoga maritima [TaxId: 2336]

Probab=84.69  E-value=0.3  Score=40.75  Aligned_cols=71  Identities=14%  Similarity=0.155  Sum_probs=37.4

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT  233 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs  233 (500)
                      +|+|..|+||+|..+||.  .+.+..............   .....+-.+...+++.+.+   .+.+++.++|.+||-=
T Consensus         4 ILViN~GSSSlK~alf~~--~~~~~~~~i~~~~~e~~~---~~~i~d~~~~~~~~i~~~L---~~~~~~~~~i~avghR   74 (172)
T d1saza1           4 ILTINPGSTSTKLSIFED--ERMVKMQNFSHSPDELGR---FQKILDQLEFREKIARQFV---EETGYSLSSFSAFVSR   74 (172)
T ss_dssp             EEEEEECSSEEEEEEEET--TEEEEEEEEECCHHHHHT---CSSGGGGHHHHHHHHHHHH---HTTTCCGGGCSEEEEE
T ss_pred             EEEEcCChHhheEEEEeC--CCceeEEEEEEccccccc---cCcccchHHHHHHHHHHHH---HHcCCChhcCeEEEEC
Confidence            688999999999999995  445544433322100000   0011111122223333333   3456777788888853

>d1g99a1 c.55.1.2 (A:1-197) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: Acetate kinase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=84.14  E-value=0.52  Score=40.19  Aligned_cols=28  Identities=14%  Similarity=0.385  Sum_probs=23.2

Q ss_pred             EEEEeccCCCceEEEEeCCCCeEEEEee
Q psy9709         155 IGVIDEGTRTVRFAIISALTQEEVVSHS  182 (500)
Q Consensus       155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~  182 (500)
                      +|+|..|+||+|..+||..+.+++....
T Consensus         3 ILViN~GSSS~K~alf~~~~~~~l~~g~   30 (197)
T d1g99a1           3 VLVINAGSSSLKYQLIDMTNESALAVGL   30 (197)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCChHhheeEEEECCCCcEEEEeE
Confidence            7899999999999999976567775543

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.55  E-value=0.37  Score=40.57  Aligned_cols=18  Identities=17%  Similarity=0.102  Sum_probs=15.7

Q ss_pred             EEEEecCCCcceEEEEeC
Q psy9709          26 IGVIDEGTRTVRFAIISA   43 (500)
Q Consensus        26 i~giDiGtt~~k~~v~d~   43 (500)
                      ++|||+|||++++++++.
T Consensus         3 vvGIDfGTt~s~va~~~~   20 (185)
T d1bupa1           3 AVGIDLGSTYSCVGVFQH   20 (185)
T ss_dssp             CEEEEECSSEEEEEEEET
T ss_pred             EEEEEcChhcEEEEEEEC
Confidence            456999999999999984

>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: Diol dehydratase-reactivating factor large subunit DdrA
species: Klebsiella oxytoca [TaxId: 571]

Probab=80.12  E-value=1.6  Score=36.73  Aligned_cols=70  Identities=19%  Similarity=0.230  Sum_probs=39.6

Q ss_pred             CCEEEEEeccCCCceEEEEeCC-CCeEE--EEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709         152 VPLIGVIDEGTRTVRFAIISAL-TQEEV--VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV  228 (500)
Q Consensus       152 ~~~~lgIDiGTts~k~~l~d~~-~G~vi--~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~  228 (500)
                      ++|+.|||||.+++-++|-... .|++-  ...-.++.=+   .| ..++...+.    .+++.++++   .+.+.+++.
T Consensus         1 M~~IaGiDIGNstTEvala~v~~~g~~~fl~S~i~~TTGi---KG-T~~Ni~Gv~----~aL~~al~k---~g~~~~d~~   69 (241)
T d2d0oa2           1 MRYIAGIDIGNSSTEVALATLDEAGALTITHSALAETTGI---KG-TLRNVFGIQ----EALALVARG---AGIAVSDIS   69 (241)
T ss_dssp             CEEEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEECCSS---TT-STTHHHHHH----HHHHHHHHH---HTCCGGGEE
T ss_pred             CceEEEEecCcchhhhheeeecCCCcEEEEeccccccccc---cc-cHHHHHHHH----HHHHHHHHH---cCCCHHHhh
Confidence            3689999999999999998853 34433  3333332211   11 134444444    444455544   366667775


Q ss_pred             EEEE
Q psy9709         229 TLGI  232 (500)
Q Consensus       229 ~I~v  232 (500)
                      -|-+
T Consensus        70 lIri   73 (241)
T d2d0oa2          70 LIRI   73 (241)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            5554