Psyllid ID: psy9717

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MEYLNCASTAPDDLMFHIGHVIEIQQVFCKMQIICSSKTLKRHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRFPGLHFFFFFWLNCGS
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHEEHHHHHHHHHHHHHHEEEEccHHHHHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHcccccccEEEEEEcccc
Coil and Loop (DISEMBL)
meylncastapddlmFHIGHVIEIQQVFCKMQIICSSKTLKRHLVQLLCLLFLLLqparhsklekADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGfsecagevgrfpglhFFFFFWLNCGS
Flexible Loop (DISEMBL)
MEYLNCASTAPDDLMFHIGHVIEIQQVFCKMQIICSSKTLKRHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRFPGLHFFFFFWLNCGS
Low Complexity Region (SEG)
MEYLNCASTAPDDLMFHIGHVIEIQQVFCKMQIICSSKTLKRHlvqllcllflllQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRFPGLHfffffWLNCGS
Disordered region (IsUnstruct)
*****CASTAPDDLMFHIGHVIEIQQVFCKMQIICSSKTLKRHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRFPGLHFFFFFWLNC**
Disordered Region (DISOPRED)
********************************IICSSKTLKRHLVQLLCLLF*************ADILEMTVKHLEN****************LNKFRAGFSECAGEVGRFPGLHFFFFFWLNCGS
Disordered Region (DISEMBL)
MEYLNCASTAPDDLMFHIGHVIEIQQVFCKMQIICSSKTLKRHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRFPGLHFFFFFWLNCGS
Disordered Region (DISPRO)
***LNCASTAPDDLMFHIGHVIEIQQVFCKMQIICSSKTLKRHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRFPGLHFFFFFWLNCGS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEYLNCASTAPDDLMFHIGHVIEIQQVFCKMQIICSSKTLKRHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRFPGLHFFFFFWLNCGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
Q3ZBG4	280	Transcription factor HES-	yes	N/A	0.574	0.260	0.586	1e-17
Q14469	280	Transcription factor HES-	yes	N/A	0.574	0.260	0.586	1e-17
Q04666	281	Transcription factor HES-	yes	N/A	0.574	0.259	0.586	1e-17
P35428	282	Transcription factor HES-	yes	N/A	0.574	0.258	0.586	2e-17
Q6IRB2	267	Transcription factor HES-	N/A	N/A	0.574	0.273	0.586	2e-17
Q8AVU4	267	Transcription factor HES-	N/A	N/A	0.574	0.273	0.586	3e-17
Q5PPM5	267	Transcription factor HES-	yes	N/A	0.574	0.273	0.586	3e-17
Q26263	435	Protein deadpan OS=Drosop	yes	N/A	0.440	0.128	0.660	3e-17
O57337	290	Transcription factor HES-	no	N/A	0.535	0.234	0.602	8e-17
Q90Z12	281	Transcription factor HES-	N/A	N/A	0.574	0.259	0.56	2e-16

>sp|Q3ZBG4|HES1_BOVIN Transcription factor HES-1 OS=Bos taurus GN=HES1 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 2/75 (2%)

Query: 40  LKRHLVQLLCLLFLLLQ--PARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNK 97
           +   L QL  L+   L+   +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K
Sbjct: 50  INESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGK 109

Query: 98  FRAGFSECAGEVGRF 112
           +RAGFSEC  EV RF
Sbjct: 110 YRAGFSECMNEVTRF 124

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1. Binds DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low affinity (By similarity). May play a role in a functional FA core complex response to DNA cross-link damage, being required for the stability and nuclear localization of FA core complex proteins, as well as for FANCD2 monoubiquitination in response to DNA damage.
Bos taurus (taxid: 9913)

>sp|Q14469|HES1_HUMAN Transcription factor HES-1 OS=Homo sapiens GN=HES1 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 2/75 (2%)

Query: 40  LKRHLVQLLCLLFLLLQ--PARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNK 97
           +   L QL  L+   L+   +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K
Sbjct: 50  INESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGK 109

Query: 98  FRAGFSECAGEVGRF 112
           +RAGFSEC  EV RF
Sbjct: 110 YRAGFSECMNEVTRF 124

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1. Binds DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low affinity (By similarity). May play a role in a functional FA core complex response to DNA cross-link damage, being required for the stability and nuclear localization of FA core complex proteins, as well as for FANCD2 monoubiquitination in response to DNA damage.

Homo sapiens (taxid: 9606)

>sp|Q04666|HES1_RAT Transcription factor HES-1 OS=Rattus norvegicus GN=Hes1 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 2/75 (2%)

Query: 40  LKRHLVQLLCLLFLLLQ--PARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNK 97
           +   L QL  L+   L+   +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K
Sbjct: 50  INESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGK 109

Query: 98  FRAGFSECAGEVGRF 112
           +RAGFSEC  EV RF
Sbjct: 110 YRAGFSECMNEVTRF 124

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1. Binds DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low affinity. May play a role in a functional FA core complex response to DNA cross-link damage, being required for the stability and nuclear localization of FA core complex proteins, as well as for FANCD2 monoubiquitination in response to DNA damage.

Rattus norvegicus (taxid: 10116)

>sp|P35428|HES1_MOUSE Transcription factor HES-1 OS=Mus musculus GN=Hes1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 2/75 (2%)

Query: 40  LKRHLVQLLCLLFLLLQ--PARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNK 97
           +   L QL  L+   L+   +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K
Sbjct: 50  INESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGK 109

Query: 98  FRAGFSECAGEVGRF 112
           +RAGFSEC  EV RF
Sbjct: 110 YRAGFSECMNEVTRF 124

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1 (By similarity). Binds DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low affinity. May play a role in a functional FA core complex response to DNA cross-link damage, being required for the stability and nuclear localization of FA core complex proteins, as well as for FANCD2 monoubiquitination in response to DNA damage.

Mus musculus (taxid: 10090)

>sp|Q6IRB2|HES1A_XENLA Transcription factor HES-1-A OS=Xenopus laevis GN=hes1-a PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 2/75 (2%)

Query: 40  LKRHLVQLLCLLFLLLQ--PARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNK 97
           +   L QL  L+   L+   +RHSKLEKADILEMTVKHL N+QR Q++ + +TDP VL K
Sbjct: 50  INESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRVQMSAALSTDPSVLGK 109

Query: 98  FRAGFSECAGEVGRF 112
           +RAGFSEC  EV RF
Sbjct: 110 YRAGFSECMNEVTRF 124

Transcriptional repressor of a subset of early mesodermal genes including myod1 and t/bra. Binds DNA on N-box motifs: 5'-CACNAG-3'. Acts as a negative regulator of myogenesis, mediating Notch signaling to repress expression of myod1.

Xenopus laevis (taxid: 8355)

>sp|Q8AVU4|HES1B_XENLA Transcription factor HES-1-B OS=Xenopus laevis GN=hes1-b PE=2 SV=1

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 2/75 (2%)

Query: 40  LKRHLVQLLCLLFLLLQ--PARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNK 97
           +   L QL  L+   L+   +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K
Sbjct: 50  INESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRVQMTAALSTDPSVLGK 109

Query: 98  FRAGFSECAGEVGRF 112
           +RAGFSEC  EV RF
Sbjct: 110 YRAGFSECMNEVTRF 124

Transcriptional repressor of a subset of early mesodermal genes including myod1 and t/bra. Binds DNA on N-box motifs: 5'-CACNAG-3'. Acts as a negative regulator of myogenesis, mediating Notch signaling to repress expression of myod1.

Xenopus laevis (taxid: 8355)

>sp|Q5PPM5|HES1_XENTR Transcription factor HES-1 OS=Xenopus tropicalis GN=hes1 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 2/75 (2%)

Query: 40  LKRHLVQLLCLLFLLLQ--PARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNK 97
           +   L QL  L+   L+   +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K
Sbjct: 50  INESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRVQMTAALSTDPSVLGK 109

Query: 98  FRAGFSECAGEVGRF 112
           +RAGFSEC  EV RF
Sbjct: 110 YRAGFSECMNEVTRF 124

Transcriptional repressor of a subset of early mesodermal genes including myod1 and t/bra. Binds DNA on N-box motifs: 5'-CACNAG-3'. Acts as a negative regulator of myogenesis, mediating Notch signaling to repress expression of myod1.

Xenopus tropicalis (taxid: 8364)

>sp|Q26263|DPN_DROME Protein deadpan OS=Drosophila melanogaster GN=dpn PE=1 SV=2

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/56 (66%), Positives = 47/56 (83%)

Query: 57  PARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRF 112
           PARH+KLEKADILEMTVKHL+++QRQQL ++  +DP V+ KF+ GF ECA EV R+
Sbjct: 75  PARHTKLEKADILEMTVKHLQSVQRQQLNMAIQSDPSVVQKFKTGFVECAEEVNRY 130

Transcriptional repressor of genes that require a bHLH protein for their transcription. Likely to be involved in the functional rather than the morphological differentiation of neurons. Loss of DPN function results in weak motor activity, lethargic behavior, and death. Implicated in sex determination as Groucho-DPN complex act directly to repress SXL transcription.

Drosophila melanogaster (taxid: 7227)

>sp|O57337|HES1_CHICK Transcription factor HES-1 OS=Gallus gallus GN=HES1 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 51/68 (75%)

Query: 45  VQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSE 104
           +++L L  L    +RHSKLEKADILEMTVKHL N+QR Q+A + + DP VL K+RAGF+E
Sbjct: 58  LKMLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMAAALSADPSVLGKYRAGFNE 117

Query: 105 CAGEVGRF 112
           C  EV RF
Sbjct: 118 CMNEVTRF 125

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1.

Gallus gallus (taxid: 9031)

>sp|Q90Z12|HES4A_XENLA Transcription factor HES-4-A OS=Xenopus laevis GN=hes4-a PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 2/75 (2%)

Query: 40  LKRHLVQLLCLLFLLLQ--PARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNK 97
           +   L QL  L+   L+   +RHSKLEKADILEMTVKHL N+QR Q+  +  +DP VL K
Sbjct: 50  INESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRVQMTAALTSDPSVLGK 109

Query: 98  FRAGFSECAGEVGRF 112
           +RAGF+EC  EV RF
Sbjct: 110 YRAGFNECTNEVTRF 124

Transcriptional repressor. Binds DNA on N-box motifs: 5'-CACNAG-3'. Plays a role in the patterning of tissue boundaries. Promotes floor plate development and prechordal plate development. Required for lens development as early as the stage of lens field formation, partly through regulation of gene expression of the cell cycle inhibitor cdknx/p27(xic1). A role in neural crest development is disputed.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
208972121	410	Hairy protein [Periplaneta americana]	0.464	0.143	0.915	8e-26
380021280	362	PREDICTED: protein hairy-like [Apis flor	0.559	0.196	0.774	3e-25
110762302	363	PREDICTED: protein hairy [Apis mellifera	0.559	0.195	0.774	4e-25
340723283	360	PREDICTED: protein hairy-like [Bombus te	0.559	0.197	0.760	5e-25
350409268	360	PREDICTED: protein hairy-like [Bombus im	0.559	0.197	0.760	5e-25
383855344	359	PREDICTED: protein hairy-like [Megachile	0.559	0.197	0.774	7e-25
156550861	376	PREDICTED: protein hairy-like [Nasonia v	0.566	0.191	0.736	3e-24
270014144	249	hypothetical protein TcasGA2_TC012851 [T	0.559	0.285	0.746	8e-24
166796106	249	hairy [Tribolium castaneum] gi|20269075|	0.559	0.285	0.746	9e-24
194022542	255	hairy [Tribolium confusum]	0.566	0.282	0.736	2e-23

>gi|208972121|gb|ACI32659.1| Hairy protein [Periplaneta americana]

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 54/59 (91%), Positives = 58/59 (98%)

Query: 57  PARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRFPGL 115
           PARHSKLEKADILEMTVKHLEN+QRQQ+A+SAATDP VLNKFRAGF+ECAGEVGRFPGL
Sbjct: 85  PARHSKLEKADILEMTVKHLENLQRQQVAMSAATDPSVLNKFRAGFTECAGEVGRFPGL 143

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021280|ref|XP_003694498.1| PREDICTED: protein hairy-like [Apis florea]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/71 (77%), Positives = 63/71 (88%)

Query: 45  VQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSE 104
           ++ L L  +   PARHSKLEKADILEMTVKHLE +QRQQ+AL+AATDP+VLNKFRAGF+E
Sbjct: 72  LKTLILDAMKKDPARHSKLEKADILEMTVKHLETLQRQQVALAAATDPNVLNKFRAGFTE 131

Query: 105 CAGEVGRFPGL 115
           CAGEVGRFPGL
Sbjct: 132 CAGEVGRFPGL 142

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110762302|ref|XP_393948.3| PREDICTED: protein hairy [Apis mellifera]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/71 (77%), Positives = 63/71 (88%)

Query: 45  VQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSE 104
           ++ L L  +   PARHSKLEKADILEMTVKHLE +QRQQ+AL+AATDP+VLNKFRAGF+E
Sbjct: 72  LKTLILDAMKKDPARHSKLEKADILEMTVKHLETLQRQQVALAAATDPNVLNKFRAGFTE 131

Query: 105 CAGEVGRFPGL 115
           CAGEVGRFPGL
Sbjct: 132 CAGEVGRFPGL 142

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723283|ref|XP_003400021.1| PREDICTED: protein hairy-like [Bombus terrestris]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/71 (76%), Positives = 64/71 (90%)

Query: 45  VQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSE 104
           ++ L L  +   P+RHSKLEKADILEMTVKHLE++QRQQ+AL+AATDP+VLNKFRAGF+E
Sbjct: 72  LKTLILDAMKKDPSRHSKLEKADILEMTVKHLESLQRQQVALAAATDPNVLNKFRAGFTE 131

Query: 105 CAGEVGRFPGL 115
           CAGEVGRFPGL
Sbjct: 132 CAGEVGRFPGL 142

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409268|ref|XP_003488675.1| PREDICTED: protein hairy-like [Bombus impatiens]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/71 (76%), Positives = 64/71 (90%)

Query: 45  VQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSE 104
           ++ L L  +   P+RHSKLEKADILEMTVKHLE++QRQQ+AL+AATDP+VLNKFRAGF+E
Sbjct: 72  LKTLILDAMKKDPSRHSKLEKADILEMTVKHLESLQRQQVALAAATDPNVLNKFRAGFTE 131

Query: 105 CAGEVGRFPGL 115
           CAGEVGRFPGL
Sbjct: 132 CAGEVGRFPGL 142

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855344|ref|XP_003703174.1| PREDICTED: protein hairy-like [Megachile rotundata]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/71 (77%), Positives = 62/71 (87%)

Query: 45  VQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSE 104
           ++ L L  +   PARHSKLEKADILEMTVKHLE +QRQQ+AL+AATDP VLNKFRAGF+E
Sbjct: 72  LKTLILDAMKKDPARHSKLEKADILEMTVKHLETLQRQQVALAAATDPTVLNKFRAGFTE 131

Query: 105 CAGEVGRFPGL 115
           CAGEVGRFPGL
Sbjct: 132 CAGEVGRFPGL 142

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550861|ref|XP_001601817.1| PREDICTED: protein hairy-like [Nasonia vitripennis] gi|451936070|gb|AGF87125.1| hairy [Nasonia vitripennis]

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query: 45  VQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSE 104
           ++ L L  +   PARHSKLEKADILEMTVKHLE +QRQQ+AL++ATDP+VLNKFRAGF+E
Sbjct: 79  LKALILDAMKKDPARHSKLEKADILEMTVKHLETLQRQQVALASATDPNVLNKFRAGFTE 138

Query: 105 CAGEVGRFPGLH 116
           CA EVGRFPGL 
Sbjct: 139 CANEVGRFPGLE 150

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014144|gb|EFA10592.1| hypothetical protein TcasGA2_TC012851 [Tribolium castaneum]

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 61/71 (85%)

Query: 45  VQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSE 104
           ++ L L  +   PARHSKLEKADILEMTVKHL+N+QRQQ A+SAATDP V++KFRAGFSE
Sbjct: 57  LKTLILDAMKKDPARHSKLEKADILEMTVKHLQNLQRQQAAMSAATDPSVVSKFRAGFSE 116

Query: 105 CAGEVGRFPGL 115
           CA EVGRFPGL
Sbjct: 117 CASEVGRFPGL 127

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|166796106|ref|NP_001107765.1| hairy [Tribolium castaneum] gi|20269075|emb|CAD29886.1| helix-loop-helix transcription factor [Tribolium castaneum]

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 61/71 (85%)

Query: 45  VQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSE 104
           ++ L L  +   PARHSKLEKADILEMTVKHL+N+QRQQ A+SAATDP V++KFRAGFSE
Sbjct: 57  LKTLILDAMKKDPARHSKLEKADILEMTVKHLQNLQRQQAAMSAATDPSVVSKFRAGFSE 116

Query: 105 CAGEVGRFPGL 115
           CA EVGRFPGL
Sbjct: 117 CASEVGRFPGL 127

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194022542|gb|ACF32779.1| hairy [Tribolium confusum]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 61/72 (84%)

Query: 45  VQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSE 104
           ++ L L  +   PARHSKLEKADILEMTVKHL+N+QRQQ A+SAATDP V++KFRAGFSE
Sbjct: 56  LKTLILDAMKKDPARHSKLEKADILEMTVKHLQNLQRQQAAMSAATDPSVVSKFRAGFSE 115

Query: 105 CAGEVGRFPGLH 116
           CA EVGRFPGL 
Sbjct: 116 CASEVGRFPGLE 127

Source: Tribolium confusum

Species: Tribolium confusum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
FB|FBgn0001168	337	h "hairy" [Drosophila melanoga	0.464	0.175	0.677	1.1e-18
UNIPROTKB|G3N2D5	304	HES1 "Transcription factor HES	0.433	0.180	0.709	1.8e-16
UNIPROTKB|Q3ZBG4	280	HES1 "Transcription factor HES	0.433	0.196	0.709	1.8e-16
UNIPROTKB|Q14469	280	HES1 "Transcription factor HES	0.433	0.196	0.709	1.8e-16
UNIPROTKB|I3LM61	280	HES1 "Uncharacterized protein"	0.433	0.196	0.709	1.8e-16
UNIPROTKB|Q6IRB2	267	hes1-a "Transcription factor H	0.433	0.205	0.709	1.8e-16
MGI|MGI:104853	282	Hes1 "hairy and enhancer of sp	0.433	0.195	0.709	1.8e-16
RGD|62081	281	Hes1 "hairy and enhancer of sp	0.433	0.195	0.709	1.8e-16
UNIPROTKB|Q5PPM5	267	hes1 "Transcription factor HES	0.433	0.205	0.709	2.3e-16
UNIPROTKB|Q8AVU4	267	hes1-b "Transcription factor H	0.433	0.205	0.709	2.3e-16

FB|FBgn0001168 h "hairy" [Drosophila melanogaster (taxid:7227)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 40/59 (67%), Positives = 49/59 (83%)

Query:    57 PARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRFPGL 115
             PARHSKLEKADILE TVKHL+ +QRQQ A+  A DP ++NKF+AGF++C  EV RFPG+
Sbjct:    66 PARHSKLEKADILEKTVKHLQELQRQQAAMQQAADPKIVNKFKAGFADCVNEVSRFPGI 124

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA;TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS;IMP;IDA;TAS;IPI

GO:0070888 "E-box binding" evidence=IDA

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0005634 "nucleus" evidence=NAS

GO:0008407 "chaeta morphogenesis" evidence=NAS

GO:0007366 "periodic partitioning by pair rule gene" evidence=NAS;TAS

GO:0007460 "R8 cell fate commitment" evidence=NAS

GO:0007435 "salivary gland morphogenesis" evidence=IGI;IMP;TAS

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0035239 "tube morphogenesis" evidence=IMP

GO:0007431 "salivary gland development" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0035289 "posterior head segmentation" evidence=TAS

GO:0035290 "trunk segmentation" evidence=TAS

GO:0007424 "open tracheal system development" evidence=IMP

GO:0031323 "regulation of cellular metabolic process" evidence=IMP

GO:0001666 "response to hypoxia" evidence=IMP

UNIPROTKB|G3N2D5 HES1 "Transcription factor HES-1" [Bos taurus (taxid:9913)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 39/55 (70%), Positives = 45/55 (81%)

Query:    58 ARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRF 112
             +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K+RAGFSEC  EV RF
Sbjct:    70 SRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNEVTRF 124

GO:2000974 "negative regulation of pro-B cell differentiation" evidence=IEA

GO:2000737 "negative regulation of stem cell differentiation" evidence=IEA

GO:2000227 "negative regulation of pancreatic A cell differentiation" evidence=IEA

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

GO:0097084 "vascular smooth muscle cell development" evidence=IEA

GO:0090102 "cochlea development" evidence=IEA

GO:0072282 "metanephric nephron tubule morphogenesis" evidence=IEA

GO:0072141 "renal interstitial cell development" evidence=IEA

GO:0072050 "S-shaped body morphogenesis" evidence=IEA

GO:0072049 "comma-shaped body morphogenesis" evidence=IEA

GO:0072012 "glomerulus vasculature development" evidence=IEA

GO:0071820 "N-box binding" evidence=IEA

GO:0061309 "cardiac neural crest cell development involved in outflow tract morphogenesis" evidence=IEA

GO:0061106 "negative regulation of stomach neuroendocrine cell differentiation" evidence=IEA

GO:0061009 "common bile duct development" evidence=IEA

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0060675 "ureteric bud morphogenesis" evidence=IEA

GO:0060412 "ventricular septum morphogenesis" evidence=IEA

GO:0060253 "negative regulation of glial cell proliferation" evidence=IEA

GO:0060164 "regulation of timing of neuron differentiation" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0048715 "negative regulation of oligodendrocyte differentiation" evidence=IEA

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IEA

GO:0048667 "cell morphogenesis involved in neuron differentiation" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IEA

GO:0045977 "positive regulation of mitotic cell cycle, embryonic" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IEA

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IEA

GO:0045598 "regulation of fat cell differentiation" evidence=IEA

GO:0043388 "positive regulation of DNA binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042668 "auditory receptor cell fate determination" evidence=IEA

GO:0042517 "positive regulation of tyrosine phosphorylation of Stat3 protein" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0035910 "ascending aorta morphogenesis" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0031016 "pancreas development" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0021984 "adenohypophysis development" evidence=IEA

GO:0021575 "hindbrain morphogenesis" evidence=IEA

GO:0021558 "trochlear nerve development" evidence=IEA

GO:0021557 "oculomotor nerve development" evidence=IEA

GO:0021555 "midbrain-hindbrain boundary morphogenesis" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0007262 "STAT protein import into nucleus" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003266 "regulation of secondary heart field cardioblast proliferation" evidence=IEA

GO:0003143 "embryonic heart tube morphogenesis" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IEA

UNIPROTKB|Q3ZBG4 HES1 "Transcription factor HES-1" [Bos taurus (taxid:9913)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 39/55 (70%), Positives = 45/55 (81%)

Query:    58 ARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRF 112
             +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K+RAGFSEC  EV RF
Sbjct:    70 SRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNEVTRF 124

GO:0021861 "forebrain radial glial cell differentiation" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=ISS

GO:2000978 "negative regulation of forebrain neuron differentiation" evidence=ISS

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=ISS

GO:0043388 "positive regulation of DNA binding" evidence=ISS

GO:0007262 "STAT protein import into nucleus" evidence=ISS

GO:0071820 "N-box binding" evidence=ISS

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISS

GO:0042517 "positive regulation of tyrosine phosphorylation of Stat3 protein" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:2000974 "negative regulation of pro-B cell differentiation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0060253 "negative regulation of glial cell proliferation" evidence=ISS

GO:0048715 "negative regulation of oligodendrocyte differentiation" evidence=ISS

GO:0048711 "positive regulation of astrocyte differentiation" evidence=ISS

UNIPROTKB|Q14469 HES1 "Transcription factor HES-1" [Homo sapiens (taxid:9606)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 39/55 (70%), Positives = 45/55 (81%)

Query:    58 ARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRF 112
             +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K+RAGFSEC  EV RF
Sbjct:    70 SRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNEVTRF 124

GO:0001889 "liver development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0021555 "midbrain-hindbrain boundary morphogenesis" evidence=IEA

GO:0021557 "oculomotor nerve development" evidence=IEA

GO:0021558 "trochlear nerve development" evidence=IEA

GO:0021575 "hindbrain morphogenesis" evidence=IEA

GO:0021984 "adenohypophysis development" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0042668 "auditory receptor cell fate determination" evidence=IEA

GO:0045598 "regulation of fat cell differentiation" evidence=IEA

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IEA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0048667 "cell morphogenesis involved in neuron differentiation" evidence=IEA

GO:0060164 "regulation of timing of neuron differentiation" evidence=IEA

GO:0060675 "ureteric bud morphogenesis" evidence=IEA

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0061009 "common bile duct development" evidence=IEA

GO:0061106 "negative regulation of stomach neuroendocrine cell differentiation" evidence=IEA

GO:0072012 "glomerulus vasculature development" evidence=IEA

GO:0072049 "comma-shaped body morphogenesis" evidence=IEA

GO:0072050 "S-shaped body morphogenesis" evidence=IEA

GO:0072141 "renal interstitial cell development" evidence=IEA

GO:0072282 "metanephric nephron tubule morphogenesis" evidence=IEA

GO:0090102 "cochlea development" evidence=IEA

GO:2000227 "negative regulation of pancreatic A cell differentiation" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IMP;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0048711 "positive regulation of astrocyte differentiation" evidence=ISS

GO:0048715 "negative regulation of oligodendrocyte differentiation" evidence=ISS

GO:0060253 "negative regulation of glial cell proliferation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:2000974 "negative regulation of pro-B cell differentiation" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISS

GO:0042517 "positive regulation of tyrosine phosphorylation of Stat3 protein" evidence=ISS

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISS

GO:0071820 "N-box binding" evidence=ISS

GO:0007262 "STAT protein import into nucleus" evidence=ISS

GO:0043388 "positive regulation of DNA binding" evidence=ISS

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=ISS

GO:2000978 "negative regulation of forebrain neuron differentiation" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=ISS

GO:0021861 "forebrain radial glial cell differentiation" evidence=ISS

GO:0097150 "neuronal stem cell maintenance" evidence=IEP

GO:2000737 "negative regulation of stem cell differentiation" evidence=IMP

GO:0008134 "transcription factor binding" evidence=NAS

GO:0003677 "DNA binding" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

GO:0031018 "endocrine pancreas development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0003143 "embryonic heart tube morphogenesis" evidence=ISS

GO:0035910 "ascending aorta morphogenesis" evidence=ISS

GO:0045977 "positive regulation of mitotic cell cycle, embryonic" evidence=ISS

GO:0060412 "ventricular septum morphogenesis" evidence=ISS

GO:0003266 "regulation of secondary heart field cardioblast proliferation" evidence=ISS

GO:0061309 "cardiac neural crest cell development involved in outflow tract morphogenesis" evidence=ISS

GO:0003151 "outflow tract morphogenesis" evidence=ISS

GO:0003281 "ventricular septum development" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0048538 "thymus development" evidence=ISS

GO:0048844 "artery morphogenesis" evidence=ISS

GO:0060037 "pharyngeal system development" evidence=ISS

GO:0097084 "vascular smooth muscle cell development" evidence=ISS

UNIPROTKB|I3LM61 HES1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 39/55 (70%), Positives = 45/55 (81%)

Query:    58 ARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRF 112
             +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K+RAGFSEC  EV RF
Sbjct:    70 SRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNEVTRF 124

GO:2000974 "negative regulation of pro-B cell differentiation" evidence=IEA

GO:2000737 "negative regulation of stem cell differentiation" evidence=IEA

GO:2000227 "negative regulation of pancreatic A cell differentiation" evidence=IEA

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

GO:0097084 "vascular smooth muscle cell development" evidence=IEA

GO:0090102 "cochlea development" evidence=IEA

GO:0072282 "metanephric nephron tubule morphogenesis" evidence=IEA

GO:0072141 "renal interstitial cell development" evidence=IEA

GO:0072050 "S-shaped body morphogenesis" evidence=IEA

GO:0072049 "comma-shaped body morphogenesis" evidence=IEA

GO:0072012 "glomerulus vasculature development" evidence=IEA

GO:0071820 "N-box binding" evidence=IEA

GO:0061309 "cardiac neural crest cell development involved in outflow tract morphogenesis" evidence=IEA

GO:0061106 "negative regulation of stomach neuroendocrine cell differentiation" evidence=IEA

GO:0061009 "common bile duct development" evidence=IEA

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0060675 "ureteric bud morphogenesis" evidence=IEA

GO:0060412 "ventricular septum morphogenesis" evidence=IEA

GO:0060253 "negative regulation of glial cell proliferation" evidence=IEA

GO:0060164 "regulation of timing of neuron differentiation" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0048715 "negative regulation of oligodendrocyte differentiation" evidence=IEA

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IEA

GO:0048667 "cell morphogenesis involved in neuron differentiation" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IEA

GO:0045977 "positive regulation of mitotic cell cycle, embryonic" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IEA

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IEA

GO:0045598 "regulation of fat cell differentiation" evidence=IEA

GO:0043388 "positive regulation of DNA binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042668 "auditory receptor cell fate determination" evidence=IEA

GO:0042517 "positive regulation of tyrosine phosphorylation of Stat3 protein" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0035910 "ascending aorta morphogenesis" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0031016 "pancreas development" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0021984 "adenohypophysis development" evidence=IEA

GO:0021575 "hindbrain morphogenesis" evidence=IEA

GO:0021558 "trochlear nerve development" evidence=IEA

GO:0021557 "oculomotor nerve development" evidence=IEA

GO:0021555 "midbrain-hindbrain boundary morphogenesis" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0007262 "STAT protein import into nucleus" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003266 "regulation of secondary heart field cardioblast proliferation" evidence=IEA

GO:0003143 "embryonic heart tube morphogenesis" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IEA

UNIPROTKB|Q6IRB2 hes1-a "Transcription factor HES-1-A" [Xenopus laevis (taxid:8355)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 39/55 (70%), Positives = 46/55 (83%)

Query:    58 ARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRF 112
             +RHSKLEKADILEMTVKHL N+QR Q++ + +TDP VL K+RAGFSEC  EV RF
Sbjct:    70 SRHSKLEKADILEMTVKHLRNLQRVQMSAALSTDPSVLGKYRAGFSECMNEVTRF 124

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0005634 "nucleus" evidence=ISS

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0043425 "bHLH transcription factor binding" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048635 "negative regulation of muscle organ development" evidence=IMP

MGI|MGI:104853 Hes1 "hairy and enhancer of split 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 39/55 (70%), Positives = 45/55 (81%)

Query:    58 ARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRF 112
             +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K+RAGFSEC  EV RF
Sbjct:    70 SRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNEVTRF 124

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IGI;IMP;IDA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0001701 "in utero embryonic development" evidence=IGI

GO:0001889 "liver development" evidence=IMP

GO:0003143 "embryonic heart tube morphogenesis" evidence=IMP

GO:0003151 "outflow tract morphogenesis" evidence=IMP

GO:0003266 "regulation of secondary heart field cardioblast proliferation" evidence=IMP

GO:0003281 "ventricular septum development" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0006461 "protein complex assembly" evidence=IDA

GO:0007155 "cell adhesion" evidence=IGI

GO:0007219 "Notch signaling pathway" evidence=ISO;NAS;TAS

GO:0007224 "smoothened signaling pathway" evidence=IDA

GO:0007262 "STAT protein import into nucleus" evidence=IDA

GO:0007389 "pattern specification process" evidence=IGI;IMP

GO:0008134 "transcription factor binding" evidence=NAS

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0016477 "cell migration" evidence=IGI

GO:0021537 "telencephalon development" evidence=IGI;IMP

GO:0021555 "midbrain-hindbrain boundary morphogenesis" evidence=IGI

GO:0021557 "oculomotor nerve development" evidence=IGI

GO:0021558 "trochlear nerve development" evidence=IGI

GO:0021575 "hindbrain morphogenesis" evidence=IGI

GO:0021861 "forebrain radial glial cell differentiation" evidence=ISO

GO:0021915 "neural tube development" evidence=IGI

GO:0021983 "pituitary gland development" evidence=IGI;IMP

GO:0021984 "adenohypophysis development" evidence=IMP

GO:0030324 "lung development" evidence=IMP

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IGI

GO:0030901 "midbrain development" evidence=IGI

GO:0031016 "pancreas development" evidence=IMP

GO:0035019 "somatic stem cell maintenance" evidence=IMP

GO:0035909 "aorta morphogenesis" evidence=IMP

GO:0035910 "ascending aorta morphogenesis" evidence=IMP

GO:0042102 "positive regulation of T cell proliferation" evidence=IMP

GO:0042491 "auditory receptor cell differentiation" evidence=IMP

GO:0042517 "positive regulation of tyrosine phosphorylation of Stat3 protein" evidence=IDA

GO:0042668 "auditory receptor cell fate determination" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0043388 "positive regulation of DNA binding" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0045165 "cell fate commitment" evidence=IMP

GO:0045596 "negative regulation of cell differentiation" evidence=IMP

GO:0045598 "regulation of fat cell differentiation" evidence=IMP

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IMP

GO:0045665 "negative regulation of neuron differentiation" evidence=IGI;IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI;IMP

GO:0045977 "positive regulation of mitotic cell cycle, embryonic" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048469 "cell maturation" evidence=IGI

GO:0048505 "regulation of timing of cell differentiation" evidence=IMP

GO:0048538 "thymus development" evidence=IMP

GO:0048667 "cell morphogenesis involved in neuron differentiation" evidence=IGI

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IDA

GO:0048715 "negative regulation of oligodendrocyte differentiation" evidence=IDA

GO:0048844 "artery morphogenesis" evidence=IMP

GO:0050767 "regulation of neurogenesis" evidence=IGI

GO:0060037 "pharyngeal system development" evidence=IMP

GO:0060164 "regulation of timing of neuron differentiation" evidence=IGI;IMP

GO:0060253 "negative regulation of glial cell proliferation" evidence=IDA

GO:0060412 "ventricular septum morphogenesis" evidence=IMP

GO:0060716 "labyrinthine layer blood vessel development" evidence=IMP

GO:0061009 "common bile duct development" evidence=IMP

GO:0061106 "negative regulation of stomach neuroendocrine cell differentiation" evidence=IMP

GO:0061309 "cardiac neural crest cell development involved in outflow tract morphogenesis" evidence=IMP

GO:0071820 "N-box binding" evidence=IDA

GO:0090102 "cochlea development" evidence=IGI;IMP

GO:0097084 "vascular smooth muscle cell development" evidence=IMP

GO:0097150 "neuronal stem cell maintenance" evidence=ISO;IMP

GO:2000227 "negative regulation of pancreatic A cell differentiation" evidence=IMP

GO:2000737 "negative regulation of stem cell differentiation" evidence=ISO

GO:2000974 "negative regulation of pro-B cell differentiation" evidence=ISO

GO:2000978 "negative regulation of forebrain neuron differentiation" evidence=ISO

GO:2000981 "negative regulation of inner ear receptor cell differentiation" evidence=IMP

RGD|62081 Hes1 "hairy and enhancer of split 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 39/55 (70%), Positives = 45/55 (81%)

Query:    58 ARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRF 112
             +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K+RAGFSEC  EV RF
Sbjct:    70 SRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNEVTRF 124

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IDA;IMP

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISO

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISO;ISS

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001889 "liver development" evidence=ISO

GO:0003143 "embryonic heart tube morphogenesis" evidence=ISO

GO:0003151 "outflow tract morphogenesis" evidence=ISO

GO:0003266 "regulation of secondary heart field cardioblast proliferation" evidence=ISO

GO:0003281 "ventricular septum development" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006461 "protein complex assembly" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=ISO

GO:0007219 "Notch signaling pathway" evidence=ISO

GO:0007224 "smoothened signaling pathway" evidence=ISO

GO:0007262 "STAT protein import into nucleus" evidence=ISO;ISS

GO:0007389 "pattern specification process" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016477 "cell migration" evidence=ISO

GO:0021537 "telencephalon development" evidence=ISO

GO:0021555 "midbrain-hindbrain boundary morphogenesis" evidence=ISO

GO:0021557 "oculomotor nerve development" evidence=ISO

GO:0021558 "trochlear nerve development" evidence=ISO

GO:0021575 "hindbrain morphogenesis" evidence=ISO

GO:0021861 "forebrain radial glial cell differentiation" evidence=IDA

GO:0021915 "neural tube development" evidence=ISO

GO:0021983 "pituitary gland development" evidence=ISO

GO:0021984 "adenohypophysis development" evidence=ISO

GO:0030324 "lung development" evidence=ISO

GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISO

GO:0030901 "midbrain development" evidence=ISO

GO:0031016 "pancreas development" evidence=ISO

GO:0035019 "somatic stem cell maintenance" evidence=ISO

GO:0035909 "aorta morphogenesis" evidence=ISO

GO:0035910 "ascending aorta morphogenesis" evidence=ISO

GO:0042102 "positive regulation of T cell proliferation" evidence=ISO

GO:0042491 "auditory receptor cell differentiation" evidence=ISO

GO:0042517 "positive regulation of tyrosine phosphorylation of Stat3 protein" evidence=ISO;ISS

GO:0042668 "auditory receptor cell fate determination" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO;ISS

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0043388 "positive regulation of DNA binding" evidence=ISO;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045165 "cell fate commitment" evidence=ISO

GO:0045596 "negative regulation of cell differentiation" evidence=ISO

GO:0045598 "regulation of fat cell differentiation" evidence=ISO

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=ISO

GO:0045665 "negative regulation of neuron differentiation" evidence=ISO

GO:0045747 "positive regulation of Notch signaling pathway" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0045977 "positive regulation of mitotic cell cycle, embryonic" evidence=ISO

GO:0046331 "lateral inhibition" evidence=ISO

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=ISO;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048469 "cell maturation" evidence=ISO

GO:0048505 "regulation of timing of cell differentiation" evidence=ISO

GO:0048538 "thymus development" evidence=ISO

GO:0048667 "cell morphogenesis involved in neuron differentiation" evidence=ISO

GO:0048711 "positive regulation of astrocyte differentiation" evidence=ISO;ISS

GO:0048715 "negative regulation of oligodendrocyte differentiation" evidence=ISO;ISS

GO:0048844 "artery morphogenesis" evidence=ISO

GO:0050767 "regulation of neurogenesis" evidence=ISO

GO:0060037 "pharyngeal system development" evidence=ISO

GO:0060164 "regulation of timing of neuron differentiation" evidence=ISO

GO:0060253 "negative regulation of glial cell proliferation" evidence=ISO;ISS

GO:0060412 "ventricular septum morphogenesis" evidence=ISO

GO:0060716 "labyrinthine layer blood vessel development" evidence=ISO

GO:0061009 "common bile duct development" evidence=ISO

GO:0061106 "negative regulation of stomach neuroendocrine cell differentiation" evidence=ISO

GO:0061309 "cardiac neural crest cell development involved in outflow tract morphogenesis" evidence=ISO

GO:0071820 "N-box binding" evidence=ISO;ISS

GO:0090102 "cochlea development" evidence=ISO

GO:0097084 "vascular smooth muscle cell development" evidence=ISO

GO:0097150 "neuronal stem cell maintenance" evidence=ISO;IDA

GO:2000227 "negative regulation of pancreatic A cell differentiation" evidence=ISO

GO:2000737 "negative regulation of stem cell differentiation" evidence=ISO

GO:2000974 "negative regulation of pro-B cell differentiation" evidence=ISO;ISS

GO:2000978 "negative regulation of forebrain neuron differentiation" evidence=IDA

GO:2000981 "negative regulation of inner ear receptor cell differentiation" evidence=ISO

UNIPROTKB|Q5PPM5 hes1 "Transcription factor HES-1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 39/55 (70%), Positives = 45/55 (81%)

Query:    58 ARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRF 112
             +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K+RAGFSEC  EV RF
Sbjct:    70 SRHSKLEKADILEMTVKHLRNLQRVQMTAALSTDPSVLGKYRAGFSECMNEVTRF 124

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0007219 "Notch signaling pathway" evidence=ISS

GO:0043425 "bHLH transcription factor binding" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=ISS

GO:0048635 "negative regulation of muscle organ development" evidence=ISS

UNIPROTKB|Q8AVU4 hes1-b "Transcription factor HES-1-B" [Xenopus laevis (taxid:8355)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 39/55 (70%), Positives = 45/55 (81%)

Query:    58 ARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRF 112
             +RHSKLEKADILEMTVKHL N+QR Q+  + +TDP VL K+RAGFSEC  EV RF
Sbjct:    70 SRHSKLEKADILEMTVKHLRNLQRVQMTAALSTDPSVLGKYRAGFSECMNEVTRF 124

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0007219 "Notch signaling pathway" evidence=ISS

GO:0043425 "bHLH transcription factor binding" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=ISS

GO:0048635 "negative regulation of muscle organ development" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q26263	DPN_DROME	No assigned EC number	0.6607	0.4409	0.1287	yes	N/A
P35428	HES1_MOUSE	No assigned EC number	0.5866	0.5748	0.2588	yes	N/A
Q14469	HES1_HUMAN	No assigned EC number	0.5866	0.5748	0.2607	yes	N/A
Q04666	HES1_RAT	No assigned EC number	0.5866	0.5748	0.2597	yes	N/A
Q3ZBG4	HES1_BOVIN	No assigned EC number	0.5866	0.5748	0.2607	yes	N/A
Q5PPM5	HES1_XENTR	No assigned EC number	0.5866	0.5748	0.2734	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	127
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	1e-04
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	4e-04
smart00353	53	smart00353, HLH, helix loop helix domain	0.003

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 53 LLLQPARHSKLEKADILEMTVKHLENMQRQQ 83
          LL       KL KA+IL   V +++++Q   
Sbjct: 29 LLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 35.5 bits (83), Expect = 4e-04
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 54 LLQPARHSKLEKADILEMTVKHLENMQ 80
          LL    + KL KA+IL + +++++++Q
Sbjct: 26 LLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 10/34 (29%), Positives = 22/34 (64%)

Query: 50 LLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ 83
          L  LL    ++ KL KA+IL + +++++++Q + 
Sbjct: 18 LRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEEL 51

Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
KOG4304|consensus	250		99.91
PF07527	43	Hairy_orange: Hairy Orange; InterPro: IPR003650 Th	98.29
smart00511	45	ORANGE Orange domain. This domain confers specific	98.08
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	97.72
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	97.71
smart00353	53	HLH helix loop helix domain.	97.54
KOG3561|consensus	803		95.32
KOG1319|consensus	229		94.1

>KOG4304|consensus

Probab=99.91  E-value=9.5e-25  Score=177.73  Aligned_cols=86  Identities=44%  Similarity=0.595  Sum_probs=73.3

Q ss_pred             hhhccchHHHHH--------HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHhhhhcC-CChhHHhHHHHHH
Q psy9717          32 QIICSSKTLKRH--------LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAA-TDPHVLNKFRAGF  102 (127)
Q Consensus        32 ~~~~s~~~~~r~--------eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~~~a~~-~~~~~~~~y~~Gy  102 (127)
                      -.++..+|.|||        +||+||++++++++.+++||||||||||||+|||++++.+...... .++...+.|+.||
T Consensus        33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~~~~~~~~~~d~f~~Gf  112 (250)
T KOG4304|consen   33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAAQAAPAALPVDSFRAGF  112 (250)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccccccccccccchhhhccH
Confidence            344566777764        9999999999999989999999999999999999999877654333 4567789999999


Q ss_pred             HHHHHHhccc----CCCch
Q psy9717         103 SECAGEVGRF----PGLHF  117 (127)
Q Consensus       103 ~eCl~EV~rF----lg~d~  117 (127)
                      ++|+.||++|    .|+|.
T Consensus       113 ~ec~~EVsr~ls~~~~~~~  131 (250)
T KOG4304|consen  113 RECAAEVSRYLSICPGMDA  131 (250)
T ss_pred             HHHHHHHHHHHhhCCCCCh
Confidence            9999999999    58884

>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family

Probab=98.29  E-value=4.2e-07  Score=55.85  Aligned_cols=28  Identities=46%  Similarity=0.711  Sum_probs=20.1

Q ss_pred             hHHHHHHHHHHHHhccc----CCCchhHHhhh
Q psy9717          96 NKFRAGFSECAGEVGRF----PGLHFFFFFWL  123 (127)
Q Consensus        96 ~~y~~Gy~eCl~EV~rF----lg~d~~~~~~~  123 (127)
                      ++|++||++|+.||++|    .|+|+.+-.-|
T Consensus         1 ~~y~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rL   32 (43)
T PF07527_consen    1 QKYRAGYSECLNEVSRFLSSVEGVDPGVRARL   32 (43)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTS---THHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCCChHHHHHH
Confidence            47999999999999999    67877665443

HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.

>smart00511 ORANGE Orange domain

Probab=98.08  E-value=2.3e-06  Score=52.76  Aligned_cols=25  Identities=44%  Similarity=0.724  Sum_probs=20.8

Q ss_pred             hHHHHHHHHHHHHhcccC----CCchhHH
Q psy9717          96 NKFRAGFSECAGEVGRFP----GLHFFFF  120 (127)
Q Consensus        96 ~~y~~Gy~eCl~EV~rFl----g~d~~~~  120 (127)
                      ++|++||++|+.||++||    ++|+.+-
T Consensus         1 ~~y~~Gy~~C~~Ev~~fLs~~~~~~~~~~   29 (45)
T smart00511        1 SSFRSGYRECANEVSRFLSQLPGTDPDVR   29 (45)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCChHHH
Confidence            479999999999999995    6777543

This domain confers specificity among members of the Hairy/E(SPL) family.

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=97.72  E-value=2.4e-05  Score=49.23  Aligned_cols=34  Identities=24%  Similarity=0.205  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQ   80 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq   80 (127)
                      +|+.+||.....   ...|+.|++||+.||.|++.||
T Consensus        22 ~L~~llp~~~~~---~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen   22 ELRELLPSCSAG---SSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHCCSSHHCC---TTSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchhcc---ccccCCHHHHHHHHHHHHHHhC
Confidence            778888774312   2479999999999999999986

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=97.71  E-value=4.6e-05  Score=47.77  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ   82 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~   82 (127)
                      +|+.+||...     ...|+.|++||++||.|++.++..
T Consensus        25 ~L~~llp~~~-----~~~k~~k~~iL~~a~~yI~~L~~~   58 (60)
T cd00083          25 ELRSLLPTLP-----PSKKLSKAEILRKAVDYIKSLQEL   58 (60)
T ss_pred             HHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            5666665532     248999999999999999999764

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=97.54  E-value=9.3e-05  Score=45.71  Aligned_cols=34  Identities=24%  Similarity=0.400  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ   82 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~   82 (127)
                      +|+.+||...     ...|+.|++||++||.|++.++..
T Consensus        17 ~L~~lip~~~-----~~~k~~k~~iL~~ai~yi~~L~~~   50 (53)
T smart00353       17 ELRSLLPTLP-----NNKKLSKAEILRLAIEYIKSLQEE   50 (53)
T ss_pred             HHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6777777532     247999999999999999999764

>KOG3561|consensus

Probab=95.32  E-value=0.019  Score=54.17  Aligned_cols=44  Identities=25%  Similarity=0.252  Sum_probs=34.3

Q ss_pred             ccchHHHHH--------HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717          35 CSSKTLKRH--------LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ   82 (127)
Q Consensus        35 ~s~~~~~r~--------eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~   82 (127)
                      .++.|++||        ||..||+.....    ..|++|--||.|||+|||.+...
T Consensus        24 ~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~----~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   24 RSEIEKRRRDQMNKYIEELSEMVPTNASL----SRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhhcchhc----ccCchHHHHHHHHHHHHHHHhhh
Confidence            355666664        788888776552    36999999999999999998765

>KOG1319|consensus

Probab=94.10  E-value=0.099  Score=42.60  Aligned_cols=39  Identities=23%  Similarity=0.224  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ   83 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~   83 (127)
                      .|+.|||.....+.. --|+-||=||.-|+.|+..|+...
T Consensus        83 dLq~LvP~cq~~ds~-g~KlskA~ILqksidyi~~L~~~k  121 (229)
T KOG1319|consen   83 DLQTLVPTCQQQDSI-GQKLSKAIILQKTIDYIQFLHKEK  121 (229)
T ss_pred             HHHHhccccccccch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999998777643 239999999999999999997654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
1a0a_A	63	BHLH, protein (phosphate system positive regulator	98.76
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	98.68
4h10_B	71	Circadian locomoter output cycles protein kaput; B	98.37
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	98.02
2db7_A	64	Hairy/enhancer-OF-split related with YRPW motif 1;	97.8
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	97.7
4ati_A	118	MITF, microphthalmia-associated transcription fact	97.65
4f3l_A	361	Mclock, circadian locomoter output cycles protein	97.39
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	97.32
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	97.26
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	97.21
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	95.93
4ath_A	83	MITF, microphthalmia-associated transcription fact	95.09
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	93.89
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	92.83
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	92.37
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	91.71
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	91.14
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	89.33

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=98.76  E-value=3.6e-09  Score=69.34  Aligned_cols=39  Identities=18%  Similarity=0.129  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717          43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ   82 (127)
Q Consensus        43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~   82 (127)
                      .+|+.|||.....+. ..+|++||+||||||+|+++|+++
T Consensus        22 ~~L~~LlP~~~~~~~-~~~k~sKa~iL~~Ai~YIk~Lq~~   60 (63)
T 1a0a_A           22 HELASLIPAEWKQQN-VSAAPSKATTVEAACRYIRHLQQN   60 (63)
T ss_dssp             HHHHHTSCHHHHTSS-CCCCSCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCcccccc-cCCcccHHHHHHHHHHHHHHHHHH
Confidence            389999999877663 258999999999999999999864

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=98.68  E-value=1.6e-08  Score=68.23  Aligned_cols=35  Identities=23%  Similarity=0.322  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHH
Q psy9717          43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQR   81 (127)
Q Consensus        43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~   81 (127)
                      .+|+.|||...  ++  .+|+|||+||++||.|||.++.
T Consensus        29 ~eL~~LvP~~~--~~--~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A           29 DELASLVPTCN--AM--SRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHSHHHH--TC--SSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHccccc--cc--cccccHHHHHHHHHHHHHHHhc
Confidence            39999999865  22  4799999999999999999864

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=98.37  E-value=2.1e-07  Score=62.67  Aligned_cols=33  Identities=12%  Similarity=0.244  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ   83 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~   83 (127)
                      +|+.|||       ...+|++||+||++||.||+.++...
T Consensus        29 eL~~LvP-------~~~~K~dK~sIL~~aI~yik~Lq~~~   61 (71)
T 4h10_B           29 ELGSMLP-------GNARKMDKSTVLQKSIDFLRKHKEIT   61 (71)
T ss_dssp             HHHTTSS-------SCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCC-------CCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence            7777777       12479999999999999999998753

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=98.02  E-value=3.9e-07  Score=58.96  Aligned_cols=37  Identities=11%  Similarity=0.083  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ   82 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~   82 (127)
                      +|+.|||......  ...|++||+||++||.|++.|+..
T Consensus        26 ~L~~lvP~~~~~~--~~~k~~Ka~IL~~ai~YI~~Lq~~   62 (65)
T 1an4_A           26 QLSKIIPDSSMES--TKSGQSKGGILSKASDYIQELRQS   62 (65)
T ss_dssp             HHHHHSCCCCCCS--STTCCCTTTTTTTTHHHHHHHHTT
T ss_pred             HHHHHCcCccccc--ccCCCCHHHHHHHHHHHHHHHHHH
Confidence            7888888643222  236999999999999999999864

>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1

Probab=97.80  E-value=1e-05  Score=53.41  Aligned_cols=31  Identities=39%  Similarity=0.707  Sum_probs=24.8

Q ss_pred             cCCChhH-HhHHHH-HHHHHHHHhccc----CCCchh
Q psy9717          88 AATDPHV-LNKFRA-GFSECAGEVGRF----PGLHFF  118 (127)
Q Consensus        88 ~~~~~~~-~~~y~~-Gy~eCl~EV~rF----lg~d~~  118 (127)
                      +..++.. .++|++ ||++|+.||+||    +|+|+.
T Consensus         8 ~~~d~~~~~~~yrs~Gf~eC~~EV~rfLs~~eg~d~~   44 (64)
T 2db7_A            8 GYFDAHALAMDYRSLGFRECLAEVARYLSIIEGLDAS   44 (64)
T ss_dssp             TCCCHHHHHHTHHHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred             cccCchHHHHHHHHHhHHHHHHHHHHHHhcCCCCCcc
Confidence            4556654 578995 999999999999    688865

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=97.70  E-value=3.3e-05  Score=52.33  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHh
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQL   84 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~   84 (127)
                      +|+.|||.       ..+|+.||+||++||.|++.|+....
T Consensus        27 ~L~~lvP~-------~~~k~~Ka~IL~~Ai~YI~~Lq~~~~   60 (82)
T 1am9_A           27 ELKDLVVG-------TEAKLNKSAVLRKAIDYIRFLQHSNQ   60 (82)
T ss_dssp             HHHHHHTC-------SSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccC-------CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            78888874       23799999999999999999987643

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=97.65  E-value=1.8e-05  Score=57.11  Aligned_cols=37  Identities=22%  Similarity=0.159  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHh
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQL   84 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~   84 (127)
                      +|+.|||.....    ..|+.||.||++||.|++.|+....
T Consensus        48 ~L~~lvP~~~~~----~~k~~Ka~IL~~aieYIk~Lq~~~~   84 (118)
T 4ati_A           48 ELGTLIPKSNDP----DMRWNKGTILKASVDYIRKLQREQQ   84 (118)
T ss_dssp             HHHHHSCCC--------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccCc----cccCCHHHHHHHHHHHHHHHHHHHH
Confidence            888898874322    2699999999999999999987644

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=97.39  E-value=7.7e-05  Score=60.36  Aligned_cols=32  Identities=13%  Similarity=0.256  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ   82 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~   82 (127)
                      +|+.|||     .  ..+||+||.||++||.|||.++..
T Consensus        33 ~l~~~~p-----~--~~~~~dk~~il~~~~~~~~~~~~~   64 (361)
T 4f3l_A           33 ELGSMLP-----G--NARKMDKSTVLQKSIDFLRKHKET   64 (361)
T ss_dssp             HHHHTCC-----S--SSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCC-----C--CCCCcCHHHHHHHHHHHHHHHHhh
Confidence            7888888     2  247999999999999999998754

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=97.32  E-value=0.00017  Score=48.20  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ   83 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~   83 (127)
                      +|+.|||...      ..|+.||+||.+||.|++.|+...
T Consensus        33 ~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~   66 (80)
T 1hlo_A           33 SLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKN   66 (80)
T ss_dssp             HHHHHSGGGT------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCcCCC------CCCccHHHHHHHHHHHHHHHHHHH
Confidence            7888887532      269999999999999999998754

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=97.26  E-value=0.00015  Score=48.64  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ   83 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~   83 (127)
                      +|+.+||...      ..|+.||+||.+||.|++.|+...
T Consensus        23 ~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~   56 (83)
T 1nkp_B           23 SLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKN   56 (83)
T ss_dssp             HHHTTSGGGT------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6677776521      379999999999999999998653

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=97.21  E-value=0.00029  Score=57.78  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQR   81 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~   81 (127)
                      +|+.|||..- ..   .+||+||.||.+||.|||.++.
T Consensus        34 ~L~~l~p~~~-~~---~~k~dk~~il~~~~~~l~~~~~   67 (387)
T 4f3l_B           34 ELASLVPTCN-AM---SRKLDKLTVLRMAVQHMKTLRG   67 (387)
T ss_dssp             HHHHHCHHHH-HC---SSCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCCCC-cc---ccccCHHHHHHHHHHHHHHhhc
Confidence            8999999762 22   3799999999999999999874

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=95.93  E-value=0.017  Score=38.67  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHh
Q psy9717          43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQL   84 (127)
Q Consensus        43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~   84 (127)
                      .+|+.+||.....+.    ++=|++||..||.|++.|+++-.
T Consensus        25 ~~Lr~~vP~~~~~~K----~~sK~~IL~~AieYI~~Lq~~l~   62 (76)
T 3u5v_A           25 RELGRMCQMHLKSDK----AQTKLLILQQAVQVILGLEQQVR   62 (76)
T ss_dssp             HHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCccc----cccHHHHHHHHHHHHHHHHHHHH
Confidence            489999997553321    23689999999999999987654

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=95.09  E-value=0.01  Score=40.95  Aligned_cols=38  Identities=24%  Similarity=0.289  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHh
Q psy9717          43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQL   84 (127)
Q Consensus        43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~   84 (127)
                      .+|..|||..  .++  .+|+.|+-||-.||.|++.|++...
T Consensus        12 ~EL~~LiP~~--~~~--~~k~nKg~IL~ksvdYI~~Lq~e~~   49 (83)
T 4ath_A           12 KELGTLIPKS--NDP--DMRWNKGTILKASVDYIRKLQREQQ   49 (83)
T ss_dssp             HHHHHHSCCC--CCT--TCCCSHHHHHHHHHHHHHHHHHTHH
T ss_pred             hhhhccCCCC--CCc--ccCcchHHHHHHHHHHHHHHHHHHH
Confidence            5889999974  333  4799999999999999999987543

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=93.89  E-value=0.031  Score=37.22  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHH
Q psy9717          43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQR   81 (127)
Q Consensus        43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~   81 (127)
                      ..||.+||..     +...||-|.|||.+++.|++.||.
T Consensus        34 ~~LR~~VP~~-----p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           34 SRLRELVPGV-----PRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             HHHHHHCCCC-----CTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCC-----CCCCCccHHHHHHHHHHHHHHHHc
Confidence            3788888873     124699999999999999999874

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=92.83  E-value=0.075  Score=33.94  Aligned_cols=34  Identities=12%  Similarity=0.211  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ   82 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~   82 (127)
                      .|+.+||..     +...||=|.|||.+++.|++.|+..
T Consensus        23 ~LR~~lP~~-----~~~~klSKi~tLr~Ai~YI~~L~~~   56 (60)
T 2ql2_B           23 NLRKVVPCY-----SKTQKLSKIETLRLAKNYIWALSEI   56 (60)
T ss_dssp             HHHHTSSSC-----CSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCC-----CCcCcCCHHHHHHHHHHHHHHHHHH
Confidence            666666642     1246999999999999999999763

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=92.37  E-value=0.26  Score=33.42  Aligned_cols=36  Identities=14%  Similarity=0.055  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHh
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQL   84 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~   84 (127)
                      .|+.+||...  +   ..|+-|+.||..|+.|++.|+....
T Consensus        27 ~Lr~~vP~~~--~---~~K~sK~~iL~~A~~YI~~L~~~~~   62 (88)
T 1nkp_A           27 ALRDQIPELE--N---NEKAPKVVILKKATAYILSVQAEEQ   62 (88)
T ss_dssp             HHHTTCGGGT--T---CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCC--C---CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            6667776521  1   3699999999999999999987643

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=91.71  E-value=0.073  Score=34.91  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQR   81 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~   81 (127)
                      .|+.+||.    .+  ..||=|++||.+++.|++.|+.
T Consensus        33 ~LR~~iP~----~~--~~KlSKi~tLr~Ai~YI~~L~~   64 (68)
T 1mdy_A           33 TLKRSTSS----NP--NQRLPKVEILRNAIRYIEGLQA   64 (68)
T ss_dssp             HHHTTSCS----CT--TSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCC----CC--CCCCCHHHHHHHHHHHHHHHHH
Confidence            67777763    12  3699999999999999999975

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=91.14  E-value=0.12  Score=36.50  Aligned_cols=34  Identities=18%  Similarity=0.270  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ   82 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~   82 (127)
                      .||.+||..     +...||=|-|||.+++.|++.|+..
T Consensus        46 ~LR~~vP~~-----p~~kKLSKIETLRlAi~YI~~Lq~~   79 (97)
T 4aya_A           46 KLKELVPSI-----PQNKKVSKMEILQHVIDYILDLQIA   79 (97)
T ss_dssp             HHHHHCTTS-----CSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCC-----CCCCcccHHHHHHHHHHHHHHHHHH
Confidence            788888763     1246999999999999999999864

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=89.33  E-value=0.86  Score=30.36  Aligned_cols=24  Identities=13%  Similarity=0.284  Sum_probs=21.1

Q ss_pred             cccchHhHHHHHHHHHHHHHHHHH
Q psy9717          60 HSKLEKADILEMTVKHLENMQRQQ   83 (127)
Q Consensus        60 ~sKLEKADILEMTV~hLk~lq~~~   83 (127)
                      ..|+=|++||..|+.|++.++...
T Consensus        33 ~~k~sk~~iL~kA~~yI~~L~~~~   56 (80)
T 1nlw_A           33 SSRHTTLSLLTKAKLHIKKLEDSD   56 (80)
T ss_dssp             SCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            468889999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	3e-06
d2db7a1	55	a.273.1.1 (A:3-57) Hairy/enhancer-of-split related	7e-05
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	0.003

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 3e-06
 Identities = 7/43 (16%), Positives = 18/43 (41%)

Query: 40 LKRHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ 82
          +   +VQL  ++      +  S   K  IL     +++ +++ 
Sbjct: 20 INNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62

>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: Orange domain-like
superfamily: Orange domain-like
family: Hairy Orange domain
domain: Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 7e-05
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 91  DPHVL-NKFRA-GFSECAGEVGRF 112
           D H L   +R+ GF EC  EV R+
Sbjct: 4   DAHALAMDYRSLGFRECLAEVARY 27

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (74), Expect = 0.003
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 55 LQPARHSKLEKADILEMTVKHLENMQRQQLALSA 88
          L     +KL K+ +L   + ++  +Q     L  
Sbjct: 31 LVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	98.4
d2db7a1	55	Hairy/enhancer-of-split related with YRPW motif pr	98.12
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	97.73
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	97.55
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	97.47
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	97.05
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	96.98
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	96.9
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	96.77

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=7.1e-08  Score=60.96  Aligned_cols=39  Identities=18%  Similarity=0.129  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717          43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ   82 (127)
Q Consensus        43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~   82 (127)
                      .+|+.|||.....+. ...|++||+||++||.|++.|++.
T Consensus        22 ~~L~~llP~~~~~~~-~~~k~sKa~iL~~Av~yI~~Lq~~   60 (63)
T d1a0aa_          22 HELASLIPAEWKQQN-VSAAPSKATTVEAACRYIRHLQQN   60 (63)
T ss_dssp             HHHHHTSCHHHHTSS-CCCCSCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCcccccC-CcccccHHHHHHHHHHHHHHHHHh
Confidence            389999998665543 358999999999999999999763

>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Orange domain-like
superfamily: Orange domain-like
family: Hairy Orange domain
domain: Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=7e-07  Score=56.27  Aligned_cols=30  Identities=43%  Similarity=0.803  Sum_probs=24.4

Q ss_pred             CCChhHHh-HHHH-HHHHHHHHhccc----CCCchh
Q psy9717          89 ATDPHVLN-KFRA-GFSECAGEVGRF----PGLHFF  118 (127)
Q Consensus        89 ~~~~~~~~-~y~~-Gy~eCl~EV~rF----lg~d~~  118 (127)
                      ..|++... +|++ ||++|+.||+||    .|+|++
T Consensus         2 ~~D~~~la~~yra~GF~ECa~EV~RyL~~~eg~d~~   37 (55)
T d2db7a1           2 YFDAHALAMDYRSLGFRECLAEVARYLSIIEGLDAS   37 (55)
T ss_dssp             CCCHHHHHHTHHHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred             CCcHHHHHHHHHhccHHHHHHHHHHHhhccCCCCcc
Confidence            35666554 8999 999999999999    578775

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.1e-06  Score=55.56  Aligned_cols=37  Identities=11%  Similarity=0.086  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ   82 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~   82 (127)
                      +|+.|||......+  ..|+.||+||++||.|++.|+..
T Consensus        26 ~L~~lvP~~~~~~~--~~k~sK~~iL~~av~yI~~Lq~~   62 (65)
T d1an4a_          26 QLSKIIPDSSMEST--KSGQSKGGILSKASDYIQELRQS   62 (65)
T ss_dssp             HHHHHSCCCCCCSS--TTCCCTTTTTTTTHHHHHHHHTT
T ss_pred             HHHHHcccccccCC--CCCCCHHHHHHHHHHHHHHHHHh
Confidence            88888887533333  47999999999999999999753

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=4.8e-05  Score=49.31  Aligned_cols=33  Identities=18%  Similarity=0.269  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ   83 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~   83 (127)
                      +|+.|||.       ..+|+.||+||+.||.|++.|+...
T Consensus        27 ~L~~llP~-------~~~k~~K~~iL~~a~~yI~~L~~~~   59 (80)
T d1am9a_          27 ELKDLVVG-------TEAKLNKSAVLRKAIDYIRFLQHSN   59 (80)
T ss_dssp             HHHHHHTC-------SSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCC-------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            77777762       2469999999999999999998753

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=3.6e-05  Score=48.91  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQR   81 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~   81 (127)
                      +|+.|||..      ...|+.||+||.+||.|++.|+.
T Consensus        33 ~L~~llP~~------~~~k~sK~~iL~~Ai~YI~~Lq~   64 (68)
T d1mdya_          33 TLKRSTSSN------PNQRLPKVEILRNAIRYIEGLQA   64 (68)
T ss_dssp             HHHTTSCSC------TTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCC------CCCCCCHHHHHHHHHHHHHHHHH
Confidence            777777742      23699999999999999999975

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00018  Score=46.56  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ   83 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~   83 (127)
                      +|+.|||..   .   ..|+.|++||+.||.|++.++...
T Consensus        23 ~L~~llP~~---~---~~k~sK~~iL~~A~~yI~~L~~~~   56 (83)
T d1nkpb_          23 SLRDSVPSL---Q---GEKASRAQILDKATEYIQYMRRKN   56 (83)
T ss_dssp             HHHTTSGGG---T---TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCC---C---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            778888742   1   259999999999999999997653

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0003  Score=45.02  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ   83 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~   83 (127)
                      +|+.|||..     ....|+-||+||..||.|++.|+...
T Consensus        22 ~L~~llP~~-----~~~~k~sK~~iL~~A~~yI~~L~~~~   56 (79)
T d1nlwa_          22 KLKGLVPLG-----PDSSRHTTLSLLTKAKLHIKKLEDSD   56 (79)
T ss_dssp             HHHHSSCCC-----SSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCccC-----CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            666666631     22469999999999999999998753

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0003  Score=43.54  Aligned_cols=35  Identities=14%  Similarity=0.231  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHh
Q psy9717          43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQL   84 (127)
Q Consensus        43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~   84 (127)
                      ..|+.|||.     +  .+|+.||.||+.|++|++.|+.+..
T Consensus         9 ~~L~~lvP~-----~--~~K~~Ka~iL~~Ai~YI~~Lq~~~~   43 (61)
T d1uklc_           9 IELKDLVMG-----T--DAKMHKSGVLRKAIDYIKYLQQVNH   43 (61)
T ss_dssp             HHHHHHHSC-----S--SCCCCTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCC-----C--CCcccHHHHHHHHHHHHHHHHHHHH
Confidence            467888883     1  3699999999999999999987654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00047  Score=44.94  Aligned_cols=35  Identities=14%  Similarity=0.068  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717          44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ   83 (127)
Q Consensus        44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~   83 (127)
                      +|+.|||..  .   ...|+.||+||+.||.|++.|+...
T Consensus        27 ~Lr~llP~~--~---~~~k~sK~~iL~~A~~yI~~L~~~~   61 (88)
T d1nkpa_          27 ALRDQIPEL--E---NNEKAPKVVILKKATAYILSVQAEE   61 (88)
T ss_dssp             HHHTTCGGG--T---TCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCC--C---CCCccCHHHHHHHHHHHHHHHHHHH
Confidence            777777742  1   1368999999999999999998754