Psyllid ID: psy9726

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
MFSKKIPSVCDQILRQSKNYGQNIVKNSIHSTAVIHQSVPEGRTKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK
ccccccccHHHHHHHHHHHHHHHHHHHHcccccHHcccccccccccccccccccccccEEcccccccccccEEEEEEEccccccHHHHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHHHHccEEEEccccccccccccccccHHHHHHHHcccEEccEEccccccccccccccEEEEEEcccccEEcccEEEEcccEEEEEEEEcHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccEEEcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccc
ccccccccHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHccccccccccccccEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccHHHHHHHHHccEEEEccccccccccccccccHHHHHHHHccEEEEEEEcccccccccccccccEEEEEEcccccEcccccEccccEEEEEEEEEHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHcHHHccEEEEcHHHHHHHHHHHHHHHccHHHcccEEEccccEEEccEccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccc
mfskkipsVCDQILRQSknygqnivknsIHSTAVIhqsvpegrtkctlipgdgvgpELVYSVqehqsvpegrtkctlipgdgvgpELVYSVQEVFkaanvpvdfepfffsevnptmsapleTVADSIARNGIclkgvlstpdyshtgelQTLNMKLRKALDLYANVVHVkslpgvkvrhsnvdcviireqtegeYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDyatknnrkkVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQmivdnctmqivsnphqfdvmvmpnlygniVDNLASGLVGGAGVVagaswspecvvfepgarhtyseavgknvanptaMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK
mfskkipsvCDQILRQSKNYGQNIVKNSIHSTAVIHQSVPEGRTKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVkslpgvkvrhsnvDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKfafdyatknnrkkvTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK
MFSKKIPSVCDQILRQSKNYGQNIVKNSIHSTAVIHQSVPEGRTKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNlasglvggagvvagasWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK
********VCDQILRQSKNYGQNIVKNSIHSTAVIHQSVPEGRTKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVL****
**************************************************************************CTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG*
********VCDQILRQSKNYGQNIVKNSIHSTAVIHQSVPEGRTKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK
****KIPSVCDQILRQSKNYGQNIVKNSIHSTAVIHQSVPEGRTKC***********************EGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFSKKIPSVCDQILRQSKNYGQNIVKNSIHSTAVIHQSVPEGRTKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query381 2.2.26 [Sep-21-2011]
Q93353379 Probable isocitrate dehyd yes N/A 0.813 0.817 0.626 1e-116
Q68FX0385 Isocitrate dehydrogenase yes N/A 0.792 0.784 0.648 1e-114
O77784385 Isocitrate dehydrogenase yes N/A 0.792 0.784 0.644 1e-114
Q28479385 Isocitrate dehydrogenase N/A N/A 0.792 0.784 0.644 1e-113
O43837385 Isocitrate dehydrogenase yes N/A 0.792 0.784 0.644 1e-113
Q5RBT4385 Isocitrate dehydrogenase yes N/A 0.792 0.784 0.638 1e-111
O94229361 Isocitrate dehydrogenase yes N/A 0.805 0.850 0.548 1e-91
P41564355 Isocitrate dehydrogenase N/A N/A 0.803 0.861 0.546 5e-91
P70404393 Isocitrate dehydrogenase no N/A 0.805 0.781 0.545 6e-91
Q58CP0392 Isocitrate dehydrogenase no N/A 0.779 0.757 0.565 7e-91
>sp|Q93353|IDH3B_CAEEL Probable isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C37E2.1 PE=3 SV=1 Back     alignment and function desciption
 Score =  419 bits (1078), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/313 (62%), Positives = 248/313 (79%), Gaps = 3/313 (0%)

Query: 72  RTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNG 131
           + K T+IPGDGVGPEL+Y+VQ++ K   +P++FE  F SEV+ T S+ +E   +SI RN 
Sbjct: 42  KLKVTIIPGDGVGPELIYTVQDIVKQTGIPIEFEEIFLSEVHYTRSSSIENAVESIGRNN 101

Query: 132 -ICLKGVLSTPDYSHT-GELQTLNMKLRKALDLYANVVHVKSLPGVKVRHS-NVDCVIIR 188
            + LKG +      HT GELQ LNM+LR++LDL+ANVVH+K+L G+K RH   +D VI+R
Sbjct: 102 NVALKGAIEESAVLHTEGELQGLNMRLRRSLDLFANVVHIKTLDGIKTRHGKQLDFVIVR 161

Query: 189 EQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKL 248
           EQTEGEYS+LEHE VPGV+ECLKI T  K+ RIAKFAFDYATK  RKKVTAVHKANIMKL
Sbjct: 162 EQTEGEYSSLEHELVPGVIECLKISTRTKAERIAKFAFDYATKTGRKKVTAVHKANIMKL 221

Query: 249 GDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGL 308
           GDGLFL +C+ +AK YPKIQFE MI+DN  MQ+VS P QFDVMVMPNLYGNI+DNLA+GL
Sbjct: 222 GDGLFLRTCEGVAKQYPKIQFESMIIDNTCMQLVSKPEQFDVMVMPNLYGNIIDNLAAGL 281

Query: 309 VGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDM 368
           VGGAGVV G S   + V+FEPG+RH++ EA+G+++ANPTAM+LC+  ML+H++L  +G+ 
Sbjct: 282 VGGAGVVPGQSVGRDFVIFEPGSRHSFQEAMGRSIANPTAMILCAANMLNHLHLDAWGNS 341

Query: 369 IRNAVNRVLKAGK 381
           +R AV  V+K GK
Sbjct: 342 LRQAVADVVKEGK 354

Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 1
>sp|Q68FX0|IDH3B_RAT Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Rattus norvegicus GN=Idh3B PE=1 SV=1 Back     alignment and function description
>sp|O77784|IDH3B_BOVIN Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Bos taurus GN=IDH3B PE=2 SV=2 Back     alignment and function description
>sp|Q28479|IDH3B_MACFA Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Macaca fascicularis GN=IDH3B PE=2 SV=2 Back     alignment and function description
>sp|O43837|IDH3B_HUMAN Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Homo sapiens GN=IDH3B PE=1 SV=2 Back     alignment and function description
>sp|Q5RBT4|IDH3B_PONAB Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Pongo abelii GN=IDH3B PE=2 SV=1 Back     alignment and function description
>sp|O94229|IDH1_KLULA Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=IDH1 PE=3 SV=1 Back     alignment and function description
>sp|P41564|IDH3G_MACFA Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3G PE=2 SV=1 Back     alignment and function description
>sp|P70404|IDHG1_MOUSE Isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial OS=Mus musculus GN=Idh3g PE=1 SV=1 Back     alignment and function description
>sp|Q58CP0|IDH3G_BOVIN Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Bos taurus GN=IDH3G PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
189241141381 PREDICTED: similar to CG6439 CG6439-PA [ 0.821 0.821 0.846 1e-151
307210578374 Probable isocitrate dehydrogenase [NAD] 0.837 0.852 0.821 1e-150
66530240374 PREDICTED: isocitrate dehydrogenase [NAD 0.839 0.855 0.815 1e-149
380026705374 PREDICTED: isocitrate dehydrogenase [NAD 0.839 0.855 0.815 1e-149
345491738373 PREDICTED: probable isocitrate dehydroge 0.821 0.839 0.833 1e-149
307166534374 Probable isocitrate dehydrogenase [NAD] 0.837 0.852 0.815 1e-148
383856749374 PREDICTED: isocitrate dehydrogenase [NAD 0.839 0.855 0.815 1e-148
332023734374 Isocitrate dehydrogenase [NAD] subunit b 0.837 0.852 0.815 1e-148
321454356381 hypothetical protein DAPPUDRAFT_303613 [ 0.842 0.842 0.778 1e-148
322793633375 hypothetical protein SINV_09716 [Solenop 0.837 0.850 0.811 1e-147
>gi|189241141|ref|XP_973953.2| PREDICTED: similar to CG6439 CG6439-PA [Tribolium castaneum] gi|270013913|gb|EFA10361.1| hypothetical protein TcasGA2_TC012587 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/313 (84%), Positives = 289/313 (92%)

Query: 69  PEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIA 128
           P+ R  CTLIPGDGVGPELVYSVQEVFKAA++PVDFE +FFSEVNPT+SAPL+ VA SI+
Sbjct: 40  PDTRITCTLIPGDGVGPELVYSVQEVFKAASIPVDFESYFFSEVNPTLSAPLDDVAKSIS 99

Query: 129 RNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIR 188
           +N +CLKG+L+TPDYSHTGELQTLNMKLR +LDLYANVVHVKSLPGVK RH ++DCVIIR
Sbjct: 100 KNRVCLKGILATPDYSHTGELQTLNMKLRNSLDLYANVVHVKSLPGVKRRHEDIDCVIIR 159

Query: 189 EQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKL 248
           EQTEGEYSALEHE V GVVECLKIVTA+KS+RIAKFAFDYATKNNRKKVTAVHKANIMKL
Sbjct: 160 EQTEGEYSALEHESVKGVVECLKIVTAKKSQRIAKFAFDYATKNNRKKVTAVHKANIMKL 219

Query: 249 GDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGL 308
           GDGLFL SC+EMAKLYPKI+FE+MIVDNCTMQ+VS P QFDVMV PNLYGNIVDNLASGL
Sbjct: 220 GDGLFLRSCEEMAKLYPKIEFERMIVDNCTMQMVSKPQQFDVMVTPNLYGNIVDNLASGL 279

Query: 309 VGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDM 368
           VGGAGVVAGAS+S  CVVFEPGARHTYSEAVGKNVANPTAMLLCS K+L HVNL  YGDM
Sbjct: 280 VGGAGVVAGASYSANCVVFEPGARHTYSEAVGKNVANPTAMLLCSAKLLRHVNLPQYGDM 339

Query: 369 IRNAVNRVLKAGK 381
           IRNA+ +VLK GK
Sbjct: 340 IRNAIEQVLKDGK 352

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307210578|gb|EFN87046.1| Probable isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|66530240|ref|XP_624511.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380026705|ref|XP_003697085.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [Apis florea] Back     alignment and taxonomy information
>gi|345491738|ref|XP_001607423.2| PREDICTED: probable isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307166534|gb|EFN60601.1| Probable isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383856749|ref|XP_003703870.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332023734|gb|EGI63958.1| Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|321454356|gb|EFX65530.1| hypothetical protein DAPPUDRAFT_303613 [Daphnia pulex] Back     alignment and taxonomy information
>gi|322793633|gb|EFZ17083.1| hypothetical protein SINV_09716 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
FB|FBgn0038922370 CG6439 [Drosophila melanogaste 0.813 0.837 0.735 1.4e-133
UNIPROTKB|E2QUB9385 IDH3B "Uncharacterized protein 0.816 0.807 0.603 1.7e-105
UNIPROTKB|F1PTM3383 IDH3B "Uncharacterized protein 0.816 0.812 0.603 1.7e-105
UNIPROTKB|O77784385 IDH3B "Isocitrate dehydrogenas 0.816 0.807 0.600 1.2e-104
RGD|621881385 Idh3B "isocitrate dehydrogenas 0.816 0.807 0.603 1.5e-104
WB|WBGene00007993379 idhb-1 [Caenorhabditis elegans 0.813 0.817 0.584 1.5e-104
UNIPROTKB|O43837385 IDH3B "Isocitrate dehydrogenas 0.816 0.807 0.600 5.1e-104
UNIPROTKB|H9L0K2385 IDH3B "Uncharacterized protein 0.837 0.828 0.576 4.6e-103
UNIPROTKB|F1S897383 IDH3B "Isocitrate dehydrogenas 0.811 0.806 0.597 5.2e-102
ZFIN|ZDB-GENE-040625-174383 idh3b "isocitrate dehydrogenas 0.839 0.835 0.595 2.1e-100
FB|FBgn0038922 CG6439 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1208 (430.3 bits), Expect = 1.4e-133, Sum P(2) = 1.4e-133
 Identities = 228/310 (73%), Positives = 263/310 (84%)

Query:    72 RTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNG 131
             RT CTLIPGDGVGPELVYS+QEVFKAA+VPVDFE +F SE+NP +SA LE V  SI +N 
Sbjct:    37 RTTCTLIPGDGVGPELVYSLQEVFKAASVPVDFECYFLSEINPVLSAKLEDVVASIQKNK 96

Query:   132 ICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQT 191
             +C+KGVL+TPDYS+ G+LQTLNMKLR  LDLYANVVHV+SLPGVK RH+N+D VIIREQT
Sbjct:    97 VCIKGVLATPDYSNVGDLQTLNMKLRNDLDLYANVVHVRSLPGVKTRHTNIDTVIIREQT 156

Query:   192 EGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDG 251
             EGEYSALEHE VPG+VECLKI+TA+KS RIAKFAFDYATKN RKKVTAVHKANIMKLGDG
Sbjct:   157 EGEYSALEHESVPGIVECLKIITAKKSMRIAKFAFDYATKNQRKKVTAVHKANIMKLGDG 216

Query:   252 LFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXX 311
             LFL SC+E+++LYP+IQFE+MIVDN TMQ+VSNP+QFDVMV PNLYG IVDN        
Sbjct:   217 LFLRSCEEVSRLYPRIQFEKMIVDNTTMQMVSNPNQFDVMVTPNLYGAIVDNLASGLVGG 276

Query:   312 XXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRN 371
                     +S E VVFEPGARHT++EAVGKNVANPTAMLLC  K+L H+NL  YG++I+N
Sbjct:   277 AGVVAGASYSSESVVFEPGARHTFAEAVGKNVANPTAMLLCGVKLLRHINLPTYGEIIQN 336

Query:   372 AVNRVLKAGK 381
             A+N+VL  GK
Sbjct:   337 AINKVLNDGK 346
GO:0004449 "isocitrate dehydrogenase (NAD+) activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISS
GO:0006099 "tricarboxylic acid cycle" evidence=ISS
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0005875 "microtubule associated complex" evidence=IDA
UNIPROTKB|E2QUB9 IDH3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PTM3 IDH3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O77784 IDH3B "Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|621881 Idh3B "isocitrate dehydrogenase 3 (NAD+) beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00007993 idhb-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|O43837 IDH3B "Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H9L0K2 IDH3B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1S897 IDH3B "Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040625-174 idh3b "isocitrate dehydrogenase 3 (NAD+) beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O29627LEU3_ARCFU1, ., 1, ., 1, ., 8, 50.34950.78740.9202yesN/A
Q92IR7IDH_RICCN1, ., 1, ., 1, ., 4, 20.33010.79790.6293yesN/A
Q1RJU4IDH_RICBR1, ., 1, ., 1, ., 4, 20.33650.79790.6293yesN/A
Q68XA5IDH_RICTY1, ., 1, ., 1, ., 4, 20.33650.79790.6293yesN/A
O13696IDH1_SCHPO1, ., 1, ., 1, ., 4, 10.50310.81100.8679yesN/A
P41564IDH3G_MACFA1, ., 1, ., 1, ., 4, 10.54680.80310.8619N/AN/A
P28834IDH1_YEAST1, ., 1, ., 1, ., 4, 10.50600.83980.8888yesN/A
Q4UKR1IDH_RICFE1, ., 1, ., 1, ., 4, 20.33330.79790.6293yesN/A
P33197IDH_THET81, ., 1, ., 1, ., 4, 20.37150.79260.6088yesN/A
P93032IDH2_ARATH1, ., 1, ., 1, ., 4, 10.54340.77690.8065yesN/A
P50455LEU3_SULTO1, ., 1, ., 1, ., 8, 50.35450.70340.7952yesN/A
Q5RBT4IDH3B_PONAB1, ., 1, ., 1, ., 4, 10.63810.79260.7844yesN/A
Q54B68IDHB_DICDI1, ., 1, ., 1, ., 4, 10.52090.79260.8388yesN/A
Q93353IDH3B_CAEEL1, ., 1, ., 1, ., 4, 10.62610.81360.8179yesN/A
Q9UXB2LEU3_SULSO1, ., 1, ., 1, ., 8, 50.36730.72170.8184yesN/A
O94229IDH1_KLULA1, ., 1, ., 1, ., 4, 10.54800.80570.8504yesN/A
Q68FX0IDH3B_RAT1, ., 1, ., 1, ., 4, 10.64800.79260.7844yesN/A
Q9ZDR0IDH_RICPR1, ., 1, ., 1, ., 4, 20.33970.79790.6293yesN/A
Q58130LEU3_METJA1, ., 1, ., 1, ., 8, 30.33430.77420.8858yesN/A
O77784IDH3B_BOVIN1, ., 1, ., 1, ., 4, 10.64470.79260.7844yesN/A
O43837IDH3B_HUMAN1, ., 1, ., 1, ., 4, 10.64470.79260.7844yesN/A
A5CPZ4LEU3_CLAM31, ., 1, ., 1, ., 8, 50.30690.79000.8478yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
TIGR00175333 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, 1e-166
PLN00123360 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+ 1e-129
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 1e-111
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 1e-108
PRK08997334 PRK08997, PRK08997, isocitrate dehydrogenase; Prov 1e-97
PRK09222 482 PRK09222, PRK09222, isocitrate dehydrogenase; Vali 1e-84
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 3e-80
PRK14025330 PRK14025, PRK14025, multifunctional 3-isopropylmal 2e-72
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 4e-72
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 4e-65
PRK00772358 PRK00772, PRK00772, 3-isopropylmalate dehydrogenas 3e-50
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 2e-41
TIGR02089352 TIGR02089, TTC, tartrate dehydrogenase 7e-41
TIGR00169346 TIGR00169, leuB, 3-isopropylmalate dehydrogenase 1e-40
PRK03437344 PRK03437, PRK03437, 3-isopropylmalate dehydrogenas 2e-40
PRK06451412 PRK06451, PRK06451, isocitrate dehydrogenase; Vali 3e-38
TIGR00183416 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase 3e-37
PRK08194352 PRK08194, PRK08194, tartrate dehydrogenase; Provis 2e-33
PRK07006409 PRK07006, PRK07006, isocitrate dehydrogenase; Revi 1e-30
PLN02329409 PLN02329, PLN02329, 3-isopropylmalate dehydrogenas 7e-24
PRK07362474 PRK07362, PRK07362, isocitrate dehydrogenase; Vali 2e-10
PRK07362474 PRK07362, PRK07362, isocitrate dehydrogenase; Vali 1e-07
>gnl|CDD|232856 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information 
 Score =  466 bits (1202), Expect = e-166
 Identities = 184/311 (59%), Positives = 226/311 (72%), Gaps = 2/311 (0%)

Query: 71  GRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARN 130
           G+   TLIPGDG+GPE+  SV+++F+AANVP++FE    S      +   +   +SI RN
Sbjct: 2   GKYTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQTDGKTEIPDEAVESIKRN 61

Query: 131 GICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQ 190
            + LKG L TP     G  ++LN+ LRK LDLYANVVH KSLPG K RH +VD VIIRE 
Sbjct: 62  KVALKGPLETP--IGKGGHRSLNVALRKELDLYANVVHCKSLPGFKTRHEDVDIVIIREN 119

Query: 191 TEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGD 250
           TEGEYS LEHE VPGVVE LK++T +KS RIA++AF+YA KN RKKVTAVHKANIMKL D
Sbjct: 120 TEGEYSGLEHESVPGVVESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLAD 179

Query: 251 GLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVG 310
           GLFLN C+E+AK YP I FE MIVDN  MQ+VS P QFDVMVMPNLYGNI+ NL +GLVG
Sbjct: 180 GLFLNVCREVAKEYPDITFESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVG 239

Query: 311 GAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIR 370
           G G+V GA+   +  VFEPG RHT  +  G+N+ANPTA++L S  ML+H+ L+ + D I+
Sbjct: 240 GPGLVPGANIGRDYAVFEPGVRHTGPDIAGQNIANPTALILSSVMMLNHLGLKEHADRIQ 299

Query: 371 NAVNRVLKAGK 381
            AV   +  GK
Sbjct: 300 KAVLSTIAEGK 310

Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the multimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Mitochondrial NAD-dependent isocitrate dehydrogenases (IDH) resemble prokaryotic NADP-dependent IDH and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent IDH. The mitochondrial NAD-dependent isocitrate dehydrogenase is believed to be an alpha(2)-beta-gamma heterotetramer. All subunits are homologous and found by this model. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1 [Energy metabolism, TCA cycle]. Length = 333
>gnl|CDD|215065 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|181606 PRK08997, PRK08997, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236416 PRK09222, PRK09222, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|184462 PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information
>gnl|CDD|234832 PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233718 TIGR02089, TTC, tartrate dehydrogenase Back     alignment and domain information
>gnl|CDD|232853 TIGR00169, leuB, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|179579 PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|235803 PRK06451, PRK06451, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|232862 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>gnl|CDD|181281 PRK08194, PRK08194, tartrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|180792 PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|215188 PLN02329, PLN02329, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|180944 PRK07362, PRK07362, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|180944 PRK07362, PRK07362, isocitrate dehydrogenase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 381
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
KOG0785|consensus365 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
KOG0784|consensus375 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
KOG0786|consensus363 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
KOG1526|consensus422 100.0
KOG0784|consensus375 98.19
KOG0785|consensus365 97.98
PLN00123360 isocitrate dehydrogenase (NAD+) 97.31
PLN00118372 isocitrate dehydrogenase (NAD+) 97.02
PRK09222 482 isocitrate dehydrogenase; Validated 96.68
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 96.59
PRK08997334 isocitrate dehydrogenase; Provisional 96.47
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 96.34
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 96.31
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 96.24
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 96.11
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 96.1
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 96.08
PRK08194352 tartrate dehydrogenase; Provisional 96.04
PLN02329409 3-isopropylmalate dehydrogenase 95.77
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 95.63
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 95.44
PRK06451412 isocitrate dehydrogenase; Validated 95.37
PF03971735 IDH: Monomeric isocitrate dehydrogenase; InterPro: 95.11
PRK03371326 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 94.9
PRK03743332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 94.73
PRK00232332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 94.72
PRK02746345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 94.68
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 94.67
PRK01909329 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 94.59
TIGR00557320 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. 94.45
PRK07006409 isocitrate dehydrogenase; Reviewed 94.3
PRK03946307 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 94.29
PRK05312336 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 94.24
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 94.03
PF04166298 PdxA: Pyridoxal phosphate biosynthetic protein Pdx 94.02
TIGR00178741 monomer_idh isocitrate dehydrogenase, NADP-depende 93.85
PRK07362 474 isocitrate dehydrogenase; Validated 93.44
COG1995332 PdxA Pyridoxal phosphate biosynthesis protein [Coe 92.09
KOG0786|consensus363 90.28
COG2838744 Icd Monomeric isocitrate dehydrogenase [Energy pro 88.8
PRK08299402 isocitrate dehydrogenase; Validated 82.46
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-111  Score=820.86  Aligned_cols=308  Identities=39%  Similarity=0.597  Sum_probs=293.1

Q ss_pred             CceEEEEecCCCchhHHHHHHHHHHHHcC---CCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCC
Q psy9726          71 GRTKCTLIPGDGVGPELVYSVQEVFKAAN---VPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSH  145 (381)
Q Consensus        71 ~~~~IavipGDGIGpEV~~aa~~VL~a~~---~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~  145 (381)
                      .+|+|++|||||||||||+++++||+++.   ++|+|+++++|..++++++.  |++++++|+++||+||||+|+|+|+.
T Consensus         2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~   81 (348)
T COG0473           2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP   81 (348)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence            36899999999999999999999999986   89999999999999998864  79999999999999999999998754


Q ss_pred             -CcccchhhHHHHHhhcceeecEEeeecCCCCCCC-CCccEEEeccCCCceeecccce-eeCC-eEeeeeeecHHHHHHH
Q psy9726         146 -TGELQTLNMKLRKALDLYANVVHVKSLPGVKVRH-SNVDCVIIREQTEGEYSALEHE-CVPG-VVECLKIVTAEKSRRI  221 (381)
Q Consensus       146 -~~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~-~~iDivIvREnteG~Y~g~e~~-~~~~-va~~~~~~Tr~~~eRi  221 (381)
                       +...+|.+++|||+||||||+||+|.+||+++++ +++|||||||||||+|+|.++. ..++ +++++++|||+++|||
T Consensus        82 ~~~~~~~~ll~lRk~l~lyANlRP~k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~eva~~~~~~Tr~~~eRI  161 (348)
T COG0473          82 LPRPERGLLLALRKELDLYANLRPAKSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGGEVAIDTKVITRKGSERI  161 (348)
T ss_pred             CCCcccchHHHHHHhcCceeeeeecccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCCeEEEEEEeccHHHHHHH
Confidence             2456789999999999999999999999999987 6899999999999999999884 3344 8999999999999999


Q ss_pred             HHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHH
Q psy9726         222 AKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIV  301 (381)
Q Consensus       222 ar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIL  301 (381)
                      +|+|||+|++|++|+||+|||+|||+.|++||+++++|++++||||+++|+|||+++||||++|++||||||+|||||||
T Consensus       162 ~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDIL  241 (348)
T COG0473         162 ARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDIL  241 (348)
T ss_pred             HHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhhcCCCcchhHHhHHHHHHHHhhCccccCEEEEccchhHHH
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcCCcccccccccCCC--ccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHc
Q psy9726         302 DNLASGLVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKA  379 (381)
Q Consensus       302 SDlaa~l~GslGl~psanig~~--~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~  379 (381)
                      ||++|+++|||||+||||+|++  ++||||+| ||||||||||+|||+|+|||++|||+|+|..++|++|++||.++|++
T Consensus       242 SD~aa~l~GslGl~PSAnig~~~~~~lfEPvH-GSAPDIAGkgiANPiA~IlS~aMML~~~g~~~~A~~Ie~Av~~vl~~  320 (348)
T COG0473         242 SDEAAALTGSLGLAPSANLGDERGPALFEPVH-GSAPDIAGKGIANPIATILSAAMMLRHLGEKEAADAIENAVEKVLAE  320 (348)
T ss_pred             HhHHHHhcCccccCccCccCCCCCCceeecCC-CCcccccCCCccChHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence            9999999999999999999997  99999999 99999999999999999999999999999999999999999999985

>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>KOG0785|consensus Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>KOG0784|consensus Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG0786|consensus Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>KOG1526|consensus Back     alignment and domain information
>KOG0784|consensus Back     alignment and domain information
>KOG0785|consensus Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1 Back     alignment and domain information
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Back     alignment and domain information
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>KOG0786|consensus Back     alignment and domain information
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
3blw_A349 Yeast Isocitrate Dehydrogenase With Citrate And Amp 6e-82
3blv_A354 Yeast Isocitrate Dehydrogenase With Citrate Bound I 5e-78
3blw_B354 Yeast Isocitrate Dehydrogenase With Citrate And Amp 7e-60
3blv_B354 Yeast Isocitrate Dehydrogenase With Citrate Bound I 5e-56
2d1c_A 496 Crystal Structure Of Tt0538 Protein From Thermus Th 1e-45
1wpw_A336 Crystal Structure Of Ipmdh From Sulfolobus Tokodaii 5e-40
3asj_A334 Crystal Structure Of Homoisocitrate Dehydrogenase I 1e-38
1x0l_A333 Crystal Structure Of Tetrameric Homoisocitrate Dehy 1e-38
3ah3_A334 Crystal Structure Of Lr5-1, 3-Isopropylmalate Dehyd 1e-37
3u1h_A390 Crystal Structure Of Ipmdh From The Last Common Anc 1e-30
3ty3_A366 Crystal Structure Of Homoisocitrate Dehydrogenase F 2e-29
3fmx_X364 Crystal Structure Of Tartrate Dehydrogenase From Ps 1e-27
2iv0_A412 Thermal Stability Of Isocitrate Dehydrogenase From 2e-27
1idm_A343 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chime 4e-27
1gc8_A345 The Crystal Structure Of Thermus Thermophilus 3-Iso 6e-27
1dr8_A344 Structure Of Modified 3-Isopropylmalate Dehydrogena 1e-26
1wal_A345 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M21 1e-26
1dpz_A349 Stucture Of Modified 3-Isopropylmalate Dehydrogenas 2e-26
1dr0_A346 Structure Of Modified 3-isopropylmalate Dehydrogena 2e-26
1osj_A345 Structure Of 3-isopropylmalate Dehydrogenase Length 2e-26
2y3z_A359 Structure Of Isopropylmalate Dehydrogenase From The 2e-26
1osi_A345 Structure Of 3-Isopropylmalate Dehydrogenase Length 2e-26
1ipd_A345 Three-Dimensional Structure Of A Highly Thermostabl 2e-26
1g2u_A345 The Structure Of The Mutant, A172v, Of 3-Isopropylm 2e-26
1gc9_A345 The Crystal Structure Of Thermus Thermophilus 3-Iso 3e-26
1xac_A345 Chimera Isopropylmalate Dehydrogenase Between Bacil 3e-26
1v53_A366 The Crystal Structure Of 3-Isopropylmalate Dehydrog 3e-26
2ayq_A366 3-Isopropylmalate Dehydrogenase From The Moderate F 3e-26
1v5b_A366 The Structure Of The Mutant, S225a And E251l, Of 3- 1e-25
2dht_A409 Crystal Structure Of Isocitrate Dehydrogenase From 3e-25
1vlc_A366 Crystal Structure Of 3-isopropylmalate Dehydrogenas 6e-25
3flk_A364 Crystal Structure Of Tartrate Dehydrogenase From Ps 9e-25
1a05_A358 Crystal Structure Of The Complex Of 3-Isopropylmala 2e-23
3vml_A375 Chimera 3-Isopropylmalate Dehydrogenase Between She 1e-22
3vmk_A375 3-Isopropylmalate Dehydrogenase From Shewanella Ben 1e-22
1hqs_A423 Crystal Structure Of Isocitrate Dehydrogenase From 6e-22
1w0d_A337 The High Resolution Structure Of Mycobacterium Tube 2e-21
1v94_A435 Crystal Structure Of Isocitrate Dehydrogenase From 6e-21
1cnz_A363 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmon 7e-21
1cw7_A416 Low Temperature Structure Of Wild-Type Idh Complexe 5e-20
3r8w_A405 Structure Of 3-Isopropylmalate Dehydrogenase Isofor 5e-20
1p8f_A416 A Four Location Model To Explain The Stereospecific 5e-20
3vkz_A375 3-Isopropylmalate Dehydrogenase From Shewanella One 5e-20
1bl5_A414 Isocitrate Dehydrogenase From E. Coli Single Turnov 5e-20
1cm7_A363 3-Isopropylmalate Dehydrogenase From Escherichia Co 6e-20
6icd_A416 Regulation Of An Enzyme By Phosphorylation At The A 8e-20
4icd_A416 Regulation Of Isocitrate Dehydrogenase By Phosphory 9e-20
1iso_A416 Isocitrate Dehydrogenase: Structure Of An Engineere 9e-20
1hj6_A416 Isocitrate Dehydrogenase S113e Mutant Complexed Wit 9e-20
3dms_A427 1.65a Crystal Structure Of Isocitrate Dehydrogenase 1e-19
1idd_A416 Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme Le 1e-19
1cw1_A416 Crystal Structure Of Isocitrate Dehydrogenase Mutan 3e-19
4ajb_A416 3d Structure Of E. Coli Isocitrate Dehydrogenase K1 3e-19
1grp_A416 Regulatory And Catalytic Mechanisms In Escherichia 5e-19
1gro_A416 Regulatory And Catalytic Mechanisms In Escherichia 1e-18
2d4v_A429 Crystal Structure Of Nad Dependent Isocitrate Dehyd 5e-17
4iwh_A363 Crystal Structure Of A 3-isopropylmalate Dehydrogen 1e-16
3udu_A361 Crystal Structure Of Putative 3-Isopropylmalate Deh 1e-15
3udo_A361 Crystal Structure Of Putative Isopropylamlate Dehyd 1e-12
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound In The Regulatory Subunits Length = 349 Back     alignment and structure 
Iteration: 1

 Score =  300 bits (769), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 157/325 (48%), Positives = 206/325 (63%), Gaps = 8/325 (2%)
Query: 61  SVQEHQSVPE---GRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMS 117
           + Q  +++P+   GR   TLIPGDGVG E+  SV+ +F+A N+P+D+E     + +    
Sbjct: 3   AAQAERTLPKKYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTD--HK 60
Query: 118 APLETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKV 177
             +    +S+ RN I LKG+  TP    TG   +LN+ LRK LD+YANV   KSL GVK 
Sbjct: 61  EGVYEAVESLKRNKIGLKGLWHTP-ADQTGH-GSLNVALRKQLDIYANVALFKSLKGVKT 118
Query: 178 RHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKV 237
           R  ++D ++IRE TEGE+S LEHE VPGVVE LK++T  K+ RIA+FAFD+A K NRK V
Sbjct: 119 RIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSV 178
Query: 238 TAVHKANIMKLGDGLFLNSCKEMA-KLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNL 296
           TAVHKANIMKLGDGLF N   E+  K YP I    +IVDN +MQ V+ PHQFDV+V P++
Sbjct: 179 TAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSM 238
Query: 297 YGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 356
           YG I+ N                +  +  VFEPG+RH   +  G+NVANPTAM+L ST M
Sbjct: 239 YGTILGNIGAALIGGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLM 298
Query: 357 LSHVNLQYYGDMIRNAVNRVLKAGK 381
           L+H+ L  Y   I  AV+  +  GK
Sbjct: 299 LNHLGLNEYATRISKAVHETIAEGK 323
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus Thermophilus Hb8 Length = 496 Back     alignment and structure
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii Length = 336 Back     alignment and structure
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In Complex With A Designed Inhibitor Length = 334 Back     alignment and structure
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate Dehydrogenase From An Extreme Thermophile, Thermus Thermophilus Length = 333 Back     alignment and structure
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate Dehydrogenase Created By Directed Evolution Length = 334 Back     alignment and structure
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor Of Bacillus Length = 390 Back     alignment and structure
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine Length = 366 Back     alignment and structure
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From Archaeoglobus Fulgidus Studied By Crystal Structure Analysis And Engineering Of Chimers Length = 412 Back     alignment and structure
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera Length = 343 Back     alignment and structure
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Phe Length = 345 Back     alignment and structure
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd177 Length = 344 Back     alignment and structure
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from Thermus Thermophilus Length = 345 Back     alignment and structure
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd711 Length = 349 Back     alignment and structure
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At The C- Terminus, Hd708 Length = 346 Back     alignment and structure
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus Thermophilus - Apo Enzyme Length = 359 Back     alignment and structure
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus Thermophilus At 2.2 Angstroms Resolution Length = 345 Back     alignment and structure
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate Dehydrogenase From Thermus Thermophilus Hb8 : Its Thermostability And Structure Length = 345 Back     alignment and structure
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Gly Length = 345 Back     alignment and structure
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus Subtilis (M) And Thermus Thermophilus (T) From N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated At S82r. Low Temperature (100k) Structure. Length = 345 Back     alignment and structure
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase From Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate Facultative Thermophile, Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3- Isopropylmalate Dehydrogenase From Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Sulfolobus Tokodaii Strain7 Length = 409 Back     alignment and structure
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase (tm0556) From Thermotoga Maritima At 1.90 A Resolution Length = 366 Back     alignment and structure
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From Pseudomonas Complex With Nadh, Oxalate And Metal Ion Length = 364 Back     alignment and structure
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate Dehydrogenase From Thiobacillus Ferrooxidans With 3- Isopropylmalate Length = 358 Back     alignment and structure
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O Length = 375 Back     alignment and structure
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica Db21 Mt-2 Length = 375 Back     alignment and structure
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Bacillus Subtilis Length = 423 Back     alignment and structure
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium Tuberculosis Leub (Rv2995c) Length = 337 Back     alignment and structure
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Aeropyrum Pernix Length = 435 Back     alignment and structure
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella Typhimurium Length = 363 Back     alignment and structure
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With Mg- Isocitrate Length = 416 Back     alignment and structure
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2 From Arabidopsis Thaliana At 2.2 Angstrom Resolution Length = 405 Back     alignment and structure
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of Proteins. Length = 416 Back     alignment and structure
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 At Atmospheric Pressure Length = 375 Back     alignment and structure
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue Structure Of Rate-limited Product Complex, 10 Msec Time Resolution Length = 414 Back     alignment and structure
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli Length = 363 Back     alignment and structure
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active Site Length = 416 Back     alignment and structure
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation Involves No Long-Range Conformational Change In The Free Enzyme Length = 416 Back     alignment and structure
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered Nadp+--> Nad+ Specificity-Reversal Mutant Length = 416 Back     alignment and structure
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled) Length = 416 Back     alignment and structure
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From Burkholderia Pseudomallei Length = 427 Back     alignment and structure
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme Length = 416 Back     alignment and structure
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m Bound To Isocitrate And Mn2+ Length = 416 Back     alignment and structure
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m Mutant In Complex With Isocitrate, Magnesium(Ii) And Thionadp Length = 416 Back     alignment and structure
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli Isocitrate Dehydrogenase: Multiple Roles For N115 Length = 416 Back     alignment and structure
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli Isocitrate Dehydrogenase: Multiple Roles For N115 Length = 416 Back     alignment and structure
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate Dehydrogenase From Acidithiobacillus Thiooxidans Length = 429 Back     alignment and structure
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase From Burkholderia Pseudomallei Length = 363 Back     alignment and structure
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate Dehydrogenase From Campylobacter Jejuni Length = 361 Back     alignment and structure
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate Dehydrogenase From Campylobacter Jejuni Length = 361 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 1e-163
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 1e-162
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 1e-158
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 1e-141
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 1e-134
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 1e-118
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 1e-110
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 1e-110
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 1e-109
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 1e-107
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 1e-100
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 2e-95
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 1e-73
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 3e-63
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 5e-50
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 2e-49
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 6e-49
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 6e-49
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 1e-48
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 4e-48
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 4e-48
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 2e-47
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 2e-05
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 3e-04
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 6e-04
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
 Score =  461 bits (1188), Expect = e-163
 Identities = 163/312 (52%), Positives = 212/312 (67%), Gaps = 5/312 (1%)

Query: 71  GRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARN 130
           GR   TLIPGDGVG E+  SV+ +F+A N+P+D+E     + +       E V +S+ RN
Sbjct: 16  GRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHK-EGVYEAV-ESLKRN 73

Query: 131 GICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQ 190
            I LKG+  TP  +      +LN+ LRK LD+YANV   KSL GVK R  ++D ++IRE 
Sbjct: 74  KIGLKGLWHTP--ADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIREN 131

Query: 191 TEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGD 250
           TEGE+S LEHE VPGVVE LK++T  K+ RIA+FAFD+A K NRK VTAVHKANIMKLGD
Sbjct: 132 TEGEFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGD 191

Query: 251 GLFLNSCKEMA-KLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLV 309
           GLF N   E+  K YP I    +IVDN +MQ V+ PHQFDV+V P++YG I+ N+ + L+
Sbjct: 192 GLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALI 251

Query: 310 GGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMI 369
           GG G+VAGA++  +  VFEPG+RH   +  G+NVANPTAM+L ST ML+H+ L  Y   I
Sbjct: 252 GGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRI 311

Query: 370 RNAVNRVLKAGK 381
             AV+  +  GK
Sbjct: 312 SKAVHETIAEGK 323
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Length = 364 Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Length = 337 Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Length = 366 Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A Length = 361 Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Length = 363 Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Length = 358 Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Length = 375 Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Length = 390 Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Length = 359 Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Length = 405 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 97.29
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 96.7
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 96.69
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 96.45
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 96.44
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 96.43
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 96.3
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 96.26
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 96.23
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 96.07
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 96.03
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 95.93
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 95.87
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 95.86
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 95.7
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 95.66
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 95.58
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 95.46
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 95.36
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 95.36
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 95.01
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 94.99
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 94.98
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 94.94
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 94.86
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 94.78
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 94.43
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 93.54
4aty_A349 Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; o 93.23
1yxo_A328 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA 93.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 92.42
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 91.97
3tsn_A367 4-hydroxythreonine-4-phosphate dehydrogenase; stru 91.52
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 89.23
1vi1_A345 Fatty acid/phospholipid synthesis protein PLSX; st 82.99
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 80.02
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
Probab=100.00  E-value=8.7e-109  Score=810.75  Aligned_cols=305  Identities=35%  Similarity=0.520  Sum_probs=294.1

Q ss_pred             ceEEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCCCccc
Q psy9726          72 RTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSHTGEL  149 (381)
Q Consensus        72 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~~~~~  149 (381)
                      .++|++|||||||||||+++++||++++++|+|+++++|.+++++++.  |++++++|+++|++||||+++|.++. ..+
T Consensus         1 ~~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~-~~~   79 (333)
T 1x0l_A            1 AYRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKV-PGF   79 (333)
T ss_dssp             CEEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCC-TTC
T ss_pred             CcEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCC-cCc
Confidence            379999999999999999999999999999999999999999887753  69999999999999999999998643 467


Q ss_pred             chhhHHHHHhhcceeecEEeeecCCCCCCCCCccEEEeccCCCceeecccceeeCCeEeeeeeecHHHHHHHHHHHHHHH
Q psy9726         150 QTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYA  229 (381)
Q Consensus       150 ~s~~~~LR~~ldlyanvRPv~~~pg~~~~~~~iDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A  229 (381)
                      +|+|++|||+||||||+||||++| +++|++++|||||||||||+|+|.+++ .+++++++++||++++|||+|+||+||
T Consensus        80 ~s~~l~lR~~ldlyan~RP~~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~~~~a~~~~~~T~~~~eRiar~AF~~A  157 (333)
T 1x0l_A           80 FGAIRYLRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-YLDVAIADAVISKKASERIGRAALRIA  157 (333)
T ss_dssp             CCHHHHHHHHTTCCEEEEEEECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-ETTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             cChhHHHHHHcCCEEEEEEEeecc-CCCCCCCCCEEEEecCccceecccccc-CCCeEEEEEEecHHHHHHHHHHHHHHH
Confidence            899999999999999999999999 999999999999999999999999877 578999999999999999999999999


Q ss_pred             HhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhc
Q psy9726         230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLV  309 (381)
Q Consensus       230 ~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~  309 (381)
                      ++|+||+||++||+|||+.|||||+++|+|++++||||+++|++||+|+||||++|++||||||+|||||||||++|+++
T Consensus       158 ~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva~eyp~I~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~  237 (333)
T 1x0l_A          158 EGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLV  237 (333)
T ss_dssp             HTSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHT
T ss_pred             HhcCCCeEEEEecCccchhhhHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhc
Confidence            99988999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccccCCCccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcC
Q psy9726         310 GGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG  380 (381)
Q Consensus       310 GslGl~psanig~~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G  380 (381)
                      ||+||+||+|+|++.+||||+| ||||||||||+|||+|+|||++|||+|||+.++|++|++||.++|++|
T Consensus       238 GslGl~psanig~~~a~fEp~H-GSAPdiaGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g  307 (333)
T 1x0l_A          238 GGLGLAPSGNIGDTTAVFEPVH-GSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDLVLERG  307 (333)
T ss_dssp             TCSTTCEEEEECSSCEEEEESS-CCCGGGTTSSCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             CCcccceeeEECCCceEEeCCC-CChhhhcCCCCcCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999987
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400} Back     alignment and structure
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa} Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp} Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4 Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 381
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 5e-75
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 3e-73
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 5e-71
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 4e-68
d1g2ua_345 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-67
d1a05a_357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-67
d1w0da_337 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-66
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 4e-66
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 2e-55
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 1e-53
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 3e-52
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Salmonella typhimurium [TaxId: 90371]

 Score =  235 bits (599), Expect = 5e-75
 Identities = 78/331 (23%), Positives = 150/331 (45%), Gaps = 25/331 (7%)

Query: 74  KCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPFFFSEV--NPTMSAPLETVADSI 127
              ++PGDG+GPE++    +V  A     ++ +    +    +  +       +   +  
Sbjct: 6   HIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGC 65

Query: 128 ARNGICLKGVLSTPDYSHTGE----LQTLNMKLRKALDLYANVVHVKSLPGVK------- 176
            +    L G +  P + +        +   + LRK   L++N+   K   G++       
Sbjct: 66  EQADAILFGSVGGPKWENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRA 125

Query: 177 -VRHSNVDCVIIREQTEGEYSALEHECVPG----VVECLKIVTAEKSRRIAKFAFDYATK 231
            +  +  D + +RE T G Y                   ++    +  RIA+ AF+ A +
Sbjct: 126 DIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESA-R 184

Query: 232 NNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVM 291
             R+KVT++ KAN+++    L+     ++AK YP ++   M +DN TMQ++ +P QFDV+
Sbjct: 185 KRRRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVL 243

Query: 292 VMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLL 351
           +  NL+G+I+ +  + + G  G++  AS + +       A  +  +  GKN+ANP A +L
Sbjct: 244 LCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQIL 303

Query: 352 CSTKMLSH-VNLQYYGDMIRNAVNRVLKAGK 381
               +L + ++       I  A+NR L+ G 
Sbjct: 304 SLALLLRYSLDANDAATAIEQAINRALEEGV 334
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Length = 345 Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Length = 337 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1itwa_740 Monomeric isocitrate dehydrogenase {Azotobacter vi 97.91
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 96.98
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 96.24
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 96.07
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 96.02
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 95.85
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 95.72
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 95.71
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 95.52
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 95.36
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 92.99
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6.1e-101  Score=757.90  Aligned_cols=305  Identities=28%  Similarity=0.462  Sum_probs=289.2

Q ss_pred             eEEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCCCcccc
Q psy9726          73 TKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSHTGELQ  150 (381)
Q Consensus        73 ~~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~~~~~~  150 (381)
                      +||++|||||||||||+++++||++++.+++|+++++|++++++++.  |++++++|+++|++||||+++|.++...+.+
T Consensus         2 ~kI~vlpGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~G~~lp~et~~~~~~~daiL~G~vg~p~~~~~~~~~   81 (337)
T d1w0da_           2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPSGVLER   81 (337)
T ss_dssp             CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCTTHHHH
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHHhhCCcEEEEEeeehhhHHhhCCcCcHHHHHHHHhCCeEEECCCCCCCCCCccccc
Confidence            48999999999999999999999999999999999999999988754  6999999999999999999999875434567


Q ss_pred             hhhHHHHHhhcceeecEEeeecCCCCCCC---CCccEEEeccCCCceeecccceee----CCeEeeeeeecHHHHHHHHH
Q psy9726         151 TLNMKLRKALDLYANVVHVKSLPGVKVRH---SNVDCVIIREQTEGEYSALEHECV----PGVVECLKIVTAEKSRRIAK  223 (381)
Q Consensus       151 s~~~~LR~~ldlyanvRPv~~~pg~~~~~---~~iDivIvREnteG~Y~g~e~~~~----~~va~~~~~~Tr~~~eRiar  223 (381)
                      ++++.||++||||+|+||||++||++++.   +++|+|||||||||+|+|.++...    ++++++++++|+.+++||+|
T Consensus        82 ~~~l~LR~~ldlyaniRP~r~~~g~~~~~~~~~~vD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~t~~~~~Ri~~  161 (337)
T d1w0da_          82 GLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVA  161 (337)
T ss_dssp             HTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEESTTSTTCEEEEEEEEEHHHHHHHHH
T ss_pred             chHHHHHHHhcccceeeeEeecCccccccccCCCcCeeeHhhhhcCccccCCCeeecCCCceEEEEEEeecchheeehhh
Confidence            99999999999999999999999998775   579999999999999999987653    35999999999999999999


Q ss_pred             HHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHH
Q psy9726         224 FAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDN  303 (381)
Q Consensus       224 ~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSD  303 (381)
                      +||+||++| ||+||++||+|+|+.|||+|+++++|++++||+|+++++++|+++|||+++|++||||||+|||||||||
T Consensus       162 ~Af~~A~~~-r~~Vt~v~KaNv~~~t~g~f~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD  240 (337)
T d1w0da_         162 DAFERARRR-RKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITD  240 (337)
T ss_dssp             HHHHHHHHT-TSEEEEEECTTTSHHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHH
T ss_pred             hhhhHhhcc-CceEEEEECcchhhhhHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHhcccccceeeccHHHHHHHHH
Confidence            999999987 7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCcccccccccCCCc---cccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHc
Q psy9726         304 LASGLVGGAGVVAGASWSPEC---VVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKA  379 (381)
Q Consensus       304 laa~l~GslGl~psanig~~~---a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~  379 (381)
                      ++++++||+||+||+|+|++.   +||||+| ||||||||||+|||+|||||++|||+|||+.++|++|++||+++|++
T Consensus       241 laa~l~GglGl~psanig~~~~~~a~fEp~H-GsApdiaGk~iANP~a~IlS~amML~~lg~~~~a~~i~~Av~~~l~~  318 (337)
T d1w0da_         241 LAAAVCGGIGLAASGNIDATRANPSMFEPVH-GSAPDIAGQGIADPTAAIMSVALLLSHLGEHDAAARVDRAVEAHLAT  318 (337)
T ss_dssp             HHHHHTTCGGGCEEEEECTTCSSCEEEEESS-CCCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcccCCccccccccccceeccccc-CchhhhcCCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999864   8999999 99999999999999999999999999999999999999999999974
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure