Psyllid ID: psy9749

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQTPA
Secondary Structure (PSIPRED)
ccccccHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEEccccccEEEEEEccEEEEHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEEcHHHcEEEEEEEcccEEcHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
qalktdvkfrdfvldptiqkSLKIEALKIVGQKKNFSAASINLLALLAEngkiknidgvINNFSIIMAAhrgdlpvevitarpleeadkSELQSTLKLFAKKGEnillttkvdpsiiggmiVSVGDKYVDMSVASKIKKYTDLLQTPA
Flexible Loop (DISEMBL)
qalktdvkfrdfvldptiqkslkieALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFakkgenillttkvdpsiigGMIVSVGDKYVDMSVASKikkytdllqtpa
Low Complexity Region (SEG)
QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFsaasinllallaENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQTPA
Disordered region (IsUnstruct)
******VKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARP**********STLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTD******
Disordered Region (DISOPRED)
QA*KTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQ***
Disordered Region (DISEMBL)
QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQTPA
Disordered Region (DISPRO)
**LKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQTP*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQTPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q24439	209	ATP synthase subunit O, m	yes	N/A	0.986	0.698	0.506	1e-39
Q5RD23	213	ATP synthase subunit O, m	yes	N/A	0.918	0.638	0.477	3e-33
P48047	213	ATP synthase subunit O, m	yes	N/A	0.858	0.596	0.496	2e-32
Q06647	213	ATP synthase subunit O, m	yes	N/A	0.972	0.676	0.496	3e-32
B0VXH3	213	ATP synthase subunit O, m	yes	N/A	0.898	0.624	0.473	9e-32
B1MT69	213	ATP synthase subunit O, m	N/A	N/A	0.898	0.624	0.466	3e-31
B2B9A1	213	ATP synthase subunit O, m	N/A	N/A	0.898	0.624	0.458	5e-31
Q2EN81	213	ATP synthase subunit O, m	yes	N/A	0.898	0.624	0.458	5e-31
Q9DB20	213	ATP synthase subunit O, m	yes	N/A	0.972	0.676	0.455	6e-30
P13621	213	ATP synthase subunit O, m	yes	N/A	0.898	0.624	0.451	2e-29

>sp|Q24439|ATPO_DROME ATP synthase subunit O, mitochondrial OS=Drosophila melanogaster GN=Oscp PE=2 SV=2

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/146 (50%), Positives = 109/146 (74%)

Query: 3   LKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINN 62
           +++D K R++V  P I K +   ALK   +K  F+ A++NLL LLA+NG++K +D VIN 
Sbjct: 64  IRSDKKLREYVTSPIINKKVMATALKEASEKLRFAPATVNLLGLLADNGRLKKLDTVINA 123

Query: 63  FSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIV 122
           +  IMAAHRG++  EV+TA+PL+ +   +L+  LK F K  E++ +T++VDPSIIGG+IV
Sbjct: 124 YKTIMAAHRGEVVCEVVTAKPLDASQSKQLEGALKSFLKGNESLKITSRVDPSIIGGLIV 183

Query: 123 SVGDKYVDMSVASKIKKYTDLLQTPA 148
           S+GDKYVDMS+A+K+K YTD++QT A
Sbjct: 184 SIGDKYVDMSIATKVKLYTDVIQTAA 209

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.
Drosophila melanogaster (taxid: 7227)

>sp|Q5RD23|ATPO_PONAB ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1

 Score =  140 bits (353), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 99/136 (72%)

Query: 13  VLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG 72
           VL+P +++S+K+++L  +  K+ FS  + NL+ LLAENG++ N  GV++ FS +M+AHRG
Sbjct: 78  VLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRG 137

Query: 73  DLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMS 132
           ++P  V +A PLEEA  SEL++ LK F  +G+ + L  K DPSI+GGMIV +G+KYVDMS
Sbjct: 138 EVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMS 197

Query: 133 VASKIKKYTDLLQTPA 148
           V +KI+K +  ++  A
Sbjct: 198 VKTKIQKLSRAMRETA 213

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Pongo abelii (taxid: 9601)

>sp|P48047|ATPO_HUMAN ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/127 (49%), Positives = 94/127 (74%)

Query: 13  VLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG 72
           VL+P +++S+K+++L  +  K+ FS  + NL+ LLAENG++ N  GV++ FS +M+ HRG
Sbjct: 78  VLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRG 137

Query: 73  DLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMS 132
           ++P  V +A PLEEA  SEL++ LK F  +G+ + L  K DPSI+GGMIV +G+KYVDMS
Sbjct: 138 EVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMS 197

Query: 133 VASKIKK 139
           V +KI+K
Sbjct: 198 VKTKIQK 204

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Homo sapiens (taxid: 9606)

>sp|Q06647|ATPO_RAT ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 101/145 (69%), Gaps = 1/145 (0%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
           Q LK D K    VL+P I++S+K+++LK +  K+ FS  + NL+ LLAENG++ N  GVI
Sbjct: 67  QLLK-DPKVSLAVLNPYIKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVI 125

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
           + FS IM+ HRG++P  V TA PL+EA  SEL++ L  F  KG+ + L  K DPSI+GGM
Sbjct: 126 SAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMGGM 185

Query: 121 IVSVGDKYVDMSVASKIKKYTDLLQ 145
           IV +G+KYVDMS  SKI+K +  ++
Sbjct: 186 IVRIGEKYVDMSAKSKIQKLSKAMR 210

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Rattus norvegicus (taxid: 10116)

>sp|B0VXH3|ATPO_CALJA ATP synthase subunit O, mitochondrial OS=Callithrix jacchus GN=ATP5O PE=3 SV=1

 Score =  135 bits (340), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 63/133 (47%), Positives = 95/133 (71%)

Query: 13  VLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG 72
           VL+P ++ S+K+++L  +  K+ FS  + NL+ LLAENG++ N  GV++ FS +M+ HRG
Sbjct: 78  VLNPYVKHSIKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRG 137

Query: 73  DLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMS 132
           ++P  V TA PLEEA  SEL++ LK F  +G+ + L  K DPSI+GGMIV +G+KYVDMS
Sbjct: 138 EVPCTVTTASPLEEATLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMS 197

Query: 133 VASKIKKYTDLLQ 145
             +KI+K +  ++
Sbjct: 198 AKTKIQKLSKAMR 210

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Callithrix jacchus (taxid: 9483)

>sp|B1MT69|ATPO_CALMO ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1

 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 94/133 (70%)

Query: 13  VLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG 72
           VL+P ++ S+K+++L  +  K+ FS  + NL+ LLAENG++ N  GV++ FS +M+ HRG
Sbjct: 78  VLNPYVKHSVKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRG 137

Query: 73  DLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMS 132
           ++P  V TA PLEE   SEL++ LK F  +G+ + L  K DPSI+GGMIV +G+KYVDMS
Sbjct: 138 EIPCTVTTASPLEETTLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMS 197

Query: 133 VASKIKKYTDLLQ 145
             +KI+K +  ++
Sbjct: 198 AKTKIQKLSKAMR 210

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Callicebus moloch (taxid: 9523)

>sp|B2B9A1|ATPO_RHIFE ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 96/133 (72%)

Query: 13  VLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG 72
           +++P I++S+K+++L  +  K+ FS  + NL+ LLAENG++ N  GVI+ FS IM+ HRG
Sbjct: 78  IMNPYIKRSIKVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRG 137

Query: 73  DLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMS 132
           ++P  V TA PL+EA  SEL++ L+ F  K + + L  K DPSI+GGMI+ +G+KYVDMS
Sbjct: 138 EVPCSVTTASPLDEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGMIIRIGEKYVDMS 197

Query: 133 VASKIKKYTDLLQ 145
             +KI+K + +++
Sbjct: 198 AKTKIQKLSRVMR 210

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Rhinolophus ferrumequinum (taxid: 59479)

>sp|Q2EN81|ATPO_PIG ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 97/133 (72%)

Query: 13  VLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG 72
           +++P +++S+K+++L  +  K+ FS  + NL+ LLAENG++ +  GVI+ FS +M+ HRG
Sbjct: 78  IMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRG 137

Query: 73  DLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMS 132
           ++P  V TA PL+EA  +EL++ LK F  KG+ + L  KVDPSI+GGMIV +G+KYVDMS
Sbjct: 138 EVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPSIMGGMIVRIGEKYVDMS 197

Query: 133 VASKIKKYTDLLQ 145
             +KI+K +  ++
Sbjct: 198 AKTKIQKLSRAMR 210

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Sus scrofa (taxid: 9823)

>sp|Q9DB20|ATPO_MOUSE ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1

 Score =  129 bits (324), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 100/145 (68%), Gaps = 1/145 (0%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
           Q LK D K    VL+P I++++K+++L  + +++ FS  + NL+ LLAENG++ N  G+I
Sbjct: 67  QLLK-DPKVSLAVLNPYIKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGII 125

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
           + FS IM+ HRG++P  V TA PL++A  SEL++ LK F    + + L  K DPSI+GGM
Sbjct: 126 SAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMGGM 185

Query: 121 IVSVGDKYVDMSVASKIKKYTDLLQ 145
           IV +G+KYVDMS  SKI+K +  ++
Sbjct: 186 IVRIGEKYVDMSAKSKIQKLSKAMR 210

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Mus musculus (taxid: 10090)

>sp|P13621|ATPO_BOVIN ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/133 (45%), Positives = 95/133 (71%)

Query: 13  VLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG 72
           +L+P +++S+K+++L  +  K+ FS  + NL+ LLAENG++ N   VI+ FS +M+ HRG
Sbjct: 78  LLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRG 137

Query: 73  DLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMS 132
           ++P  V TA  L+EA  +EL++ LK F  KG+ + L  K+DPSI+GGMIV +G+KYVDMS
Sbjct: 138 EVPCTVTTASALDEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMS 197

Query: 133 VASKIKKYTDLLQ 145
             +KI+K +  ++
Sbjct: 198 AKTKIQKLSRAMR 210

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
357216922	163	ATPase [Bactericera cockerelli]	0.898	0.815	0.872	7e-62
90819982	209	putative ATP synthase oligomycin sensiti	0.986	0.698	0.602	4e-47
91077486	209	PREDICTED: similar to H+ transporting AT	0.986	0.698	0.616	2e-45
318065010	209	H+ transporting ATP synthase O subunit [	0.972	0.688	0.576	3e-44
307189529	208	ATP synthase subunit O, mitochondrial [C	0.986	0.701	0.623	5e-44
322799129	209	hypothetical protein SINV_08671 [Solenop	0.986	0.698	0.602	1e-43
389609553	208	oligomycin sensitivity-conferring protei	1.0	0.711	0.554	3e-43
114053277	209	H+ transporting ATP synthase O subunit i	0.972	0.688	0.548	3e-42
357628614	202	H+ transporting ATP synthase O subunit i	0.972	0.712	0.541	6e-41
383852147	207	PREDICTED: ATP synthase subunit O, mitoc	0.986	0.705	0.568	9e-41

>gi|357216922|gb|AET71146.1| ATPase [Bactericera cockerelli]

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 116/133 (87%), Positives = 131/133 (98%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
           +ALKTDVKFRDFVLDPTI+K+LKIEALK +GQK+ FSAASINLL+LLAENG++K+IDGVI
Sbjct: 31  KALKTDVKFRDFVLDPTIKKTLKIEALKSIGQKQKFSAASINLLSLLAENGRLKSIDGVI 90

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
           NNFSIIMAAHRGDLPVEVITARPL++ADK+ELQSTLKLFAKKGENI+LT+KVDPSIIGGM
Sbjct: 91  NNFSIIMAAHRGDLPVEVITARPLDDADKTELQSTLKLFAKKGENIILTSKVDPSIIGGM 150

Query: 121 IVSVGDKYVDMSV 133
           IVS+GDKYVDMSV
Sbjct: 151 IVSIGDKYVDMSV 163

Source: Bactericera cockerelli

Species: Bactericera cockerelli

Genus: Bactericera

Family: Triozidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|90819982|gb|ABD98749.1| putative ATP synthase oligomycin sensitivity conferral protein [Graphocephala atropunctata]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/146 (60%), Positives = 119/146 (81%)

Query: 3   LKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINN 62
           +KTD K  +F+ DP++++SLK+EALK V      S  + NL+ LLAENG++KN++ +IN 
Sbjct: 64  MKTDKKLNEFIRDPSLKRSLKVEALKQVSSSLKLSPPTANLIGLLAENGRLKNLNAIINA 123

Query: 63  FSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIV 122
           F ++M+AHRG++P EV TA+PL++A K EL + LK FAKKGENILL TKVDP+IIGGMIV
Sbjct: 124 FKVLMSAHRGEIPCEVTTAKPLDDATKQELTAALKSFAKKGENILLQTKVDPNIIGGMIV 183

Query: 123 SVGDKYVDMSVASKIKKYTDLLQTPA 148
           S+GDKYVDMS+ASKIKKY++L+Q+ A
Sbjct: 184 SIGDKYVDMSIASKIKKYSELIQSAA 209

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077486|ref|XP_968733.1| PREDICTED: similar to H+ transporting ATP synthase O subunit [Tribolium castaneum] gi|270002753|gb|EEZ99200.1| oligomycin sensitivity-conferring protein [Tribolium castaneum]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 117/146 (80%)

Query: 2   ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVIN 61
           A+K+D K R+F+ +PTI++ LK EALK +  K + +A + NLL  LA+NG++KN+DGVIN
Sbjct: 63  AIKSDPKLREFIKNPTIKRGLKSEALKQIASKISLNAQTSNLLQTLADNGRLKNLDGVIN 122

Query: 62  NFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMI 121
            F ++MAAHRG++  EVITAR L+ A KS+L+S LK F K  E I L+TKVDPSIIGGMI
Sbjct: 123 AFKVMMAAHRGEVTCEVITARDLDAAQKSKLESVLKSFVKSSETIQLSTKVDPSIIGGMI 182

Query: 122 VSVGDKYVDMSVASKIKKYTDLLQTP 147
           VS+GDKYVDMSVASKIKKYT+++ TP
Sbjct: 183 VSIGDKYVDMSVASKIKKYTEVISTP 208

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|318065010|gb|ADV36665.1| H+ transporting ATP synthase O subunit [Antheraea yamamai]

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/144 (57%), Positives = 114/144 (79%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
           Q+L+TD K ++F+++PT++++LK EALK V  K N SA + NLL  LAENG++  +D +I
Sbjct: 62  QSLRTDAKLKEFIINPTLKRNLKAEALKHVATKTNLSATTSNLLGALAENGRLSKLDTII 121

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
           N F I+MAAHRG++  EVITA+PL++A +  L++ LK F K  E I LT KVDPS+IGGM
Sbjct: 122 NAFKIMMAAHRGEVTCEVITAKPLDQAQRQSLEAALKKFLKGNETIQLTAKVDPSLIGGM 181

Query: 121 IVSVGDKYVDMSVASKIKKYTDLL 144
           +VS+GDKYVDMSVASK+KKYT+L+
Sbjct: 182 VVSIGDKYVDMSVASKVKKYTELI 205

Source: Antheraea yamamai

Species: Antheraea yamamai

Genus: Antheraea

Family: Saturniidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189529|gb|EFN73906.1| ATP synthase subunit O, mitochondrial [Camponotus floridanus]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 115/146 (78%)

Query: 3   LKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINN 62
           LKTD K  DFV DP+I++  K EA K +G K N + A+ NLL LLAENG++  I+ +IN 
Sbjct: 63  LKTDAKLTDFVKDPSIKRKDKAEAFKAIGNKVNINPATANLLTLLAENGRLGKINQIINL 122

Query: 63  FSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIV 122
           + +IMAA+RG++  EVITA+PL+   KS+L+S LK F KKG+ ILL+TKVDPSIIGGM+V
Sbjct: 123 YKLIMAANRGEVVCEVITAKPLDADTKSKLESALKGFLKKGQTILLSTKVDPSIIGGMVV 182

Query: 123 SVGDKYVDMSVASKIKKYTDLLQTPA 148
           S+GDKYVDMSVASKIKKYTDL+Q  A
Sbjct: 183 SIGDKYVDMSVASKIKKYTDLIQATA 208

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799129|gb|EFZ20576.1| hypothetical protein SINV_08671 [Solenopsis invicta]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/146 (60%), Positives = 116/146 (79%)

Query: 3   LKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINN 62
           LKTD    DF+ +P+I++  K+EA K +G K + + A+ NLL LLAENG++  ++ +IN+
Sbjct: 64  LKTDTALLDFIKNPSIKRKDKVEAFKAIGSKVSMNPATGNLLTLLAENGRLTKLNAIINS 123

Query: 63  FSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIV 122
           + +IMAA+RG++  EVITA PL+   KS+L+STLK   KKG+ ILLTTKVDPSIIGGMIV
Sbjct: 124 YKLIMAANRGEVVCEVITANPLDTDTKSKLESTLKRLMKKGQTILLTTKVDPSIIGGMIV 183

Query: 123 SVGDKYVDMSVASKIKKYTDLLQTPA 148
           SVGDKY+DMSVASKIK YTDL++TPA
Sbjct: 184 SVGDKYIDMSVASKIKMYTDLIETPA 209

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609553|dbj|BAM18388.1| oligomycin sensitivity-conferring protein [Papilio xuthus]

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/148 (55%), Positives = 114/148 (77%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
           Q++K D K ++F+++PT+++SLK++ALK V  K N SA + NLL L+AENG++  +D VI
Sbjct: 61  QSIKADAKLKEFIINPTLKRSLKVDALKHVSSKINLSATTSNLLGLMAENGRLGKLDAVI 120

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
           N F I+MA HRG++  EVITA+PL++A    L++ LK F K  E I LT KVDP++IGGM
Sbjct: 121 NAFKIMMAGHRGEVTCEVITAKPLDQAQTQSLEAALKKFLKGNETIQLTAKVDPALIGGM 180

Query: 121 IVSVGDKYVDMSVASKIKKYTDLLQTPA 148
           IVS+GDKYVDMSVASK+KKYT+++   A
Sbjct: 181 IVSIGDKYVDMSVASKVKKYTEIISAAA 208

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114053277|ref|NP_001040526.1| H+ transporting ATP synthase O subunit isoform 1 [Bombyx mori] gi|95102854|gb|ABF51368.1| H+ transporting ATP synthase O subunit isoform 1 [Bombyx mori]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/144 (54%), Positives = 115/144 (79%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
           Q++KTD K ++F+++PT+++S+K++ALK V  K + S  + NLL LLAENG++  ++ VI
Sbjct: 62  QSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVI 121

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
           N F I+MAAHRG++  EV+TA+PL++A +  L++ LK F K  E + LT KVDPS+IGGM
Sbjct: 122 NAFKIMMAAHRGEVTCEVVTAKPLDQAQRQNLEAALKKFLKGNETLQLTAKVDPSLIGGM 181

Query: 121 IVSVGDKYVDMSVASKIKKYTDLL 144
           +VS+GDKYVDMSVASK+KKYT+L+
Sbjct: 182 VVSIGDKYVDMSVASKVKKYTELI 205

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628614|gb|EHJ77886.1| H+ transporting ATP synthase O subunit isoform 1 [Danaus plexippus]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 115/144 (79%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
           +++K+D K ++F+++PT++++LK++ALK V  K N SA + NLL L+AENG++  ++ VI
Sbjct: 55  KSIKSDPKVKEFIINPTLKRNLKVDALKQVAVKTNLSATTSNLLGLMAENGRLDKLEAVI 114

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
           N F ++MAAHRG++  EVITA+PL+ A K  L++ LK F K  E + LT KVDPS+IGGM
Sbjct: 115 NAFKMMMAAHRGEVTCEVITAKPLDPAQKQSLEAALKKFLKGNETLQLTAKVDPSLIGGM 174

Query: 121 IVSVGDKYVDMSVASKIKKYTDLL 144
           +VS+GDK+VDMSVASK+KKYT+L+
Sbjct: 175 VVSIGDKFVDMSVASKVKKYTELI 198

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852147|ref|XP_003701590.1| PREDICTED: ATP synthase subunit O, mitochondrial-like [Megachile rotundata]

 Score =  171 bits (433), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 83/146 (56%), Positives = 113/146 (77%)

Query: 3   LKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINN 62
           LKTD K  +FV DP I++  K E+LK +G K + S  + NLLALLAENG++  ++ +IN 
Sbjct: 62  LKTDQKLNEFVKDPAIKRKDKAESLKAIGSKISLSKETTNLLALLAENGRLGYLNSIINT 121

Query: 63  FSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIV 122
           F ++MAA+RG++P EV TA+PL+   K++L+  LK F  K +NILLTTKVDP+I+GGMI+
Sbjct: 122 FKLLMAANRGEVPCEVTTAKPLDADMKAKLEKALKGFLSKNQNILLTTKVDPTILGGMII 181

Query: 123 SVGDKYVDMSVASKIKKYTDLLQTPA 148
           SVGDKYVDMSVA+KIKKY+D++ T A
Sbjct: 182 SVGDKYVDMSVATKIKKYSDIIATTA 207

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
FB|FBgn0016691	209	Oscp "Oligomycin sensitivity-c	0.986	0.698	0.458	5.2e-33
UNIPROTKB|Q5RD23	213	ATP5O "ATP synthase subunit O,	0.993	0.690	0.425	2.8e-27
RGD|621379	213	Atp5o "ATP synthase, H+ transp	0.972	0.676	0.455	2.8e-27
UNIPROTKB|P48047	213	ATP5O "ATP synthase subunit O,	0.932	0.647	0.438	7.3e-27
UNIPROTKB|B0VXH3	213	ATP5O "ATP synthase subunit O,	0.972	0.676	0.420	2.5e-26
WB|WBGene00000230	228	atp-3 [Caenorhabditis elegans	0.966	0.627	0.384	3.2e-26
UNIPROTKB|E2RPE8	225	ATP5O "Uncharacterized protein	0.932	0.613	0.431	4e-26
UNIPROTKB|J9P621	213	ATP5O "Uncharacterized protein	0.932	0.647	0.431	4e-26
UNIPROTKB|B2B9A1	213	ATP5O "ATP synthase subunit O,	0.972	0.676	0.406	5.2e-26
UNIPROTKB|J9NSX8	228	J9NSX8 "Uncharacterized protei	0.932	0.605	0.431	6.6e-26

FB|FBgn0016691 Oscp "Oligomycin sensitivity-conferring protein" [Drosophila melanogaster (taxid:7227)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 67/146 (45%), Positives = 99/146 (67%)

Query:     3 LKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINN 62
             +++D K R++V  P I K +   ALK   +K  F            +NG++K +D VIN 
Sbjct:    64 IRSDKKLREYVTSPIINKKVMATALKEASEKLRFAPATVNLLGLLADNGRLKKLDTVINA 123

Query:    63 FSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIV 122
             +  IMAAHRG++  EV+TA+PL+ +   +L+  LK F K  E++ +T++VDPSIIGG+IV
Sbjct:   124 YKTIMAAHRGEVVCEVVTAKPLDASQSKQLEGALKSFLKGNESLKITSRVDPSIIGGLIV 183

Query:   123 SVGDKYVDMSVASKIKKYTDLLQTPA 148
             S+GDKYVDMS+A+K+K YTD++QT A
Sbjct:   184 SIGDKYVDMSIATKVKLYTDVIQTAA 209

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS;NAS

GO:0005756 "mitochondrial proton-transporting ATP synthase, central stalk" evidence=ISS

GO:0015992 "proton transport" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|Q5RD23 ATP5O "ATP synthase subunit O, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 63/148 (42%), Positives = 96/148 (64%)

Query:     1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVI 60
             Q LK + K    VL+P +++S+K+++L  +  K+ F            ENG++ N  GV+
Sbjct:    67 QILK-EPKVAAPVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVV 125

Query:    61 NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
             + FS +M+AHRG++P  V +A PLEEA  SEL++ LK F  +G+ + L  K DPSI+GGM
Sbjct:   126 SAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGM 185

Query:   121 IVSVGDKYVDMSVASKIKKYTDLLQTPA 148
             IV +G+KYVDMSV +KI+K +  ++  A
Sbjct:   186 IVRIGEKYVDMSVKTKIQKLSRAMRETA 213

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

RGD|621379 Atp5o "ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit" [Rattus norvegicus (taxid:10116)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 66/145 (45%), Positives = 93/145 (64%)

Query:     1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVI 60
             Q LK D K    VL+P I++S+K+++LK +  K+ F            ENG++ N  GVI
Sbjct:    67 QLLK-DPKVSLAVLNPYIKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVI 125

Query:    61 NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
             + FS IM+ HRG++P  V TA PL+EA  SEL++ L  F  KG+ + L  K DPSI+GGM
Sbjct:   126 SAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMGGM 185

Query:   121 IVSVGDKYVDMSVASKIKKYTDLLQ 145
             IV +G+KYVDMS  SKI+K +  ++
Sbjct:   186 IVRIGEKYVDMSAKSKIQKLSKAMR 210

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IDA

GO:0005496 "steroid binding" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO;TAS

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0008144 "drug binding" evidence=IEA;ISO

GO:0032403 "protein complex binding" evidence=IDA

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IEA;ISO

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=TAS

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

UNIPROTKB|P48047 ATP5O "ATP synthase subunit O, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 61/139 (43%), Positives = 91/139 (65%)

Query:     1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVI 60
             Q LK + K    VL+P +++S+K+++L  +  K+ F            ENG++ N  GV+
Sbjct:    67 QILK-EPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVV 125

Query:    61 NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
             + FS +M+ HRG++P  V +A PLEEA  SEL++ LK F  +G+ + L  K DPSI+GGM
Sbjct:   126 SAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGM 185

Query:   121 IVSVGDKYVDMSVASKIKK 139
             IV +G+KYVDMSV +KI+K
Sbjct:   186 IVRIGEKYVDMSVKTKIQK 204

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0005496 "steroid binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006754 "ATP biosynthetic process" evidence=NAS

GO:0015992 "proton transport" evidence=NAS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IMP;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=NAS;IDA

GO:0008144 "drug binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0005215 "transporter activity" evidence=NAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|B0VXH3 ATP5O "ATP synthase subunit O, mitochondrial" [Callithrix jacchus (taxid:9483)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 61/145 (42%), Positives = 92/145 (63%)

Query:     1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVI 60
             Q LK + K    VL+P ++ S+K+++L  +  K+ F            ENG++ N  GV+
Sbjct:    67 QILK-EPKVAASVLNPYVKHSIKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVV 125

Query:    61 NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
             + FS +M+ HRG++P  V TA PLEEA  SEL++ LK F  +G+ + L  K DPSI+GGM
Sbjct:   126 SAFSTMMSVHRGEVPCTVTTASPLEEATLSELKTVLKSFLSQGQILKLEVKTDPSIMGGM 185

Query:   121 IVSVGDKYVDMSVASKIKKYTDLLQ 145
             IV +G+KYVDMS  +KI+K +  ++
Sbjct:   186 IVRIGEKYVDMSAKTKIQKLSKAMR 210

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

WB|WBGene00000230 atp-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 55/143 (38%), Positives = 89/143 (62%)

Query:     4 KTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNF 63
             K + KF++FVLDPT++ + K  A++ +  K               ENG++  ++ V+++F
Sbjct:    84 KDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLESVVSSF 143

Query:    64 SIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVS 123
               IM AHRG+L V+V +A  L  +++  L   L    K G+ + +T  V PSI+GG++V+
Sbjct:   144 ESIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYAVKPSILGGLVVT 203

Query:   124 VGDKYVDMSVASKIKKYTDLLQT 146
             +GDKYVD+S+AS++KKY D L T
Sbjct:   204 IGDKYVDLSIASRVKKYKDALAT 226

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IMP

UNIPROTKB|E2RPE8 ATP5O "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 60/139 (43%), Positives = 90/139 (64%)

Query:     1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVI 60
             Q LK + K    +++P I++S+K+++L  +  K+ F            ENG++ N  GVI
Sbjct:    79 QILK-EPKMAASIMNPYIKRSVKVKSLNDMTAKERFSPITSNLINLLAENGRLNNTPGVI 137

Query:    61 NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
             + FS +M+ HRG++P  V TA PL+EA  +EL++ LK F  KG+ + L  KVDPSI+GGM
Sbjct:   138 SAFSTMMSVHRGEVPCTVTTASPLDEATLTELKTVLKSFLSKGQVLKLEVKVDPSIMGGM 197

Query:   121 IVSVGDKYVDMSVASKIKK 139
             IV +G+KY DMS  +KI+K
Sbjct:   198 IVRIGEKYADMSARTKIQK 216

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|J9P621 ATP5O "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 60/139 (43%), Positives = 90/139 (64%)

Query:     1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVI 60
             Q LK + K    +++P I++S+K+++L  +  K+ F            ENG++ N  GVI
Sbjct:    67 QILK-EPKMAASIMNPYIKRSVKVKSLNDMTAKERFSPITSNLINLLAENGRLNNTPGVI 125

Query:    61 NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
             + FS +M+ HRG++P  V TA PL+EA  +EL++ LK F  KG+ + L  KVDPSI+GGM
Sbjct:   126 SAFSTMMSVHRGEVPCTVTTASPLDEATLTELKTVLKSFLSKGQVLKLEVKVDPSIMGGM 185

Query:   121 IVSVGDKYVDMSVASKIKK 139
             IV +G+KY DMS  +KI+K
Sbjct:   186 IVRIGEKYADMSARTKIQK 204

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|B2B9A1 ATP5O "ATP synthase subunit O, mitochondrial" [Rhinolophus ferrumequinum (taxid:59479)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 59/145 (40%), Positives = 93/145 (64%)

Query:     1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVI 60
             Q LK + K    +++P I++S+K+++L  +  K+ F            ENG++ N  GVI
Sbjct:    67 QLLK-EPKMAASIMNPYIKRSIKVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVI 125

Query:    61 NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
             + FS IM+ HRG++P  V TA PL+EA  SEL++ L+ F  K + + L  K DPSI+GGM
Sbjct:   126 SAFSTIMSVHRGEVPCSVTTASPLDEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGM 185

Query:   121 IVSVGDKYVDMSVASKIKKYTDLLQ 145
             I+ +G+KYVDMS  +KI+K + +++
Sbjct:   186 IIRIGEKYVDMSAKTKIQKLSRVMR 210

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|J9NSX8 J9NSX8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/139 (43%), Positives = 89/139 (64%)

Query:     1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVI 60
             Q LK + K    +++P I++S+K+++L  V  K+ F            E G++ N  GVI
Sbjct:    82 QILK-EPKMAASIMNPYIKRSVKVKSLNDVTAKERFSPITSNLINLLAEKGRLNNTPGVI 140

Query:    61 NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
             + FS +M+ HRG++P  V TA PL+EA  +EL++ LK F  KG+ + L  KVDPSI+GGM
Sbjct:   141 SAFSTMMSVHRGEVPCTVTTASPLDEATLTELKTVLKSFLSKGQVLKLEVKVDPSIMGGM 200

Query:   121 IVSVGDKYVDMSVASKIKK 139
             IV +G+KY DMS  +KI+K
Sbjct:   201 IVRIGEKYADMSAGTKIQK 219

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A9WWS5	ATPD_BRUSI	No assigned EC number	0.3100	0.8581	0.6827	yes	N/A
Q0C0Z7	ATPD_HYPNA	No assigned EC number	0.3146	0.9527	0.7790	yes	N/A
Q06647	ATPO_RAT	No assigned EC number	0.4965	0.9729	0.6760	yes	N/A
Q5RD23	ATPO_PONAB	No assigned EC number	0.4779	0.9189	0.6384	yes	N/A
Q1MAY9	ATPD_RHIL3	No assigned EC number	0.3333	0.8581	0.6755	yes	N/A
B8H5I3	ATPD_CAUCN	No assigned EC number	0.3178	0.8581	0.6902	yes	N/A
Q2VZM9	ATPD_MAGSA	No assigned EC number	0.3161	0.9054	0.7282	yes	N/A
C3M9S4	ATPD_RHISN	No assigned EC number	0.3255	0.8581	0.6755	yes	N/A
Q2YLI4	ATPD_BRUA2	No assigned EC number	0.3100	0.8581	0.6827	yes	N/A
Q2RV21	ATPD_RHORT	No assigned EC number	0.3053	0.8716	0.6935	yes	N/A
Q2K3G7	ATPD_RHIEC	No assigned EC number	0.3037	0.8986	0.7074	yes	N/A
B5ZSP0	ATPD_RHILW	No assigned EC number	0.3333	0.8581	0.6755	yes	N/A
B9JTR5	ATPD_AGRVS	No assigned EC number	0.3053	0.8716	0.6683	yes	N/A
Q2EN81	ATPO_PIG	No assigned EC number	0.4586	0.8986	0.6244	yes	N/A
Q9DB20	ATPO_MOUSE	No assigned EC number	0.4551	0.9729	0.6760	yes	N/A
Q96251	ATPO_ARATH	No assigned EC number	0.3741	0.9932	0.6176	yes	N/A
B0VXH3	ATPO_CALJA	No assigned EC number	0.4736	0.8986	0.6244	yes	N/A
A6WXW8	ATPD_OCHA4	No assigned EC number	0.3100	0.8581	0.6827	yes	N/A
B3PQ71	ATPD_RHIE6	No assigned EC number	0.3185	0.8986	0.7074	yes	N/A
Q8YJ38	ATPD_BRUME	No assigned EC number	0.3100	0.8581	0.6827	yes	N/A
Q75EZ3	ATPO_ASHGO	No assigned EC number	0.3287	0.9256	0.6618	yes	N/A
Q9A2V6	ATPD_CAUCR	No assigned EC number	0.3178	0.8581	0.6902	yes	N/A
P09457	ATPO_YEAST	No assigned EC number	0.32	0.9391	0.6556	yes	N/A
A5VSE4	ATPD_BRUO2	No assigned EC number	0.3100	0.8581	0.6827	yes	N/A
Q57B85	ATPD_BRUAB	No assigned EC number	0.3100	0.8581	0.6827	yes	N/A
A9M840	ATPD_BRUC2	No assigned EC number	0.3100	0.8581	0.6827	yes	N/A
B2S7M6	ATPD_BRUA1	No assigned EC number	0.3100	0.8581	0.6827	yes	N/A
Q7CWL8	ATPD_AGRT5	No assigned EC number	0.3178	0.8581	0.6755	yes	N/A
C0RF53	ATPD_BRUMB	No assigned EC number	0.3100	0.8581	0.6827	yes	N/A
P05438	ATPD_RHORU	No assigned EC number	0.3053	0.8716	0.6935	yes	N/A
Q6FSD5	ATPO_CANGA	No assigned EC number	0.3356	0.9662	0.6908	yes	N/A
B9JBZ8	ATPD_AGRRK	No assigned EC number	0.3178	0.8581	0.6755	yes	N/A
Q8FYR2	ATPD_BRUSU	No assigned EC number	0.3100	0.8581	0.6827	yes	N/A
P13621	ATPO_BOVIN	No assigned EC number	0.4511	0.8986	0.6244	yes	N/A
Q24439	ATPO_DROME	No assigned EC number	0.5068	0.9864	0.6985	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	148
pfam00213	171	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	6e-34
COG0712	178	COG0712, AtpH, F0F1-type ATP synthase, delta subun	2e-25
PRK05758	177	PRK05758, PRK05758, F0F1 ATP synthase subunit delt	1e-24
PRK13429	181	PRK13429, PRK13429, F0F1 ATP synthase subunit delt	4e-19
TIGR01145	172	TIGR01145, ATP_synt_delta, ATP synthase, F1 delta	2e-18
PRK13430	271	PRK13430, PRK13430, F0F1 ATP synthase subunit delt	3e-12
CHL00119	184	CHL00119, atpD, ATP synthase CF1 delta subunit; Va	7e-11
PRK13434	184	PRK13434, PRK13434, F0F1 ATP synthase subunit delt	2e-06
PRK13441	180	PRK13441, PRK13441, F0F1 ATP synthase subunit delt	6e-06
PRK13436	179	PRK13436, PRK13436, F0F1 ATP synthase subunit delt	1e-05
PRK13428	445	PRK13428, PRK13428, F0F1 ATP synthase subunit delt	2e-05

>gnl|CDD|215793 pfam00213, OSCP, ATP synthase delta (OSCP) subunit

 Score =  116 bits (293), Expect = 6e-34
 Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 3/144 (2%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
             L  +   R+F+ +P I    K   LK V   K  S  + N L LLAENG++  +  + 
Sbjct: 31  AVLAENPDLREFLSNPLISAEEKKALLKAVFGGK-LSELTKNFLKLLAENGRLSLLPEIA 89

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
             F  +   HRG +   V +A PL E     L++ L+   K G+ + L TKVDPS+IGG+
Sbjct: 90  EEFEELYNEHRGIVEATVTSAVPLSEEQLKALKAALE--KKTGKKVKLETKVDPSLIGGV 147

Query: 121 IVSVGDKYVDMSVASKIKKYTDLL 144
           +V VGDK +D SV  K+++    L
Sbjct: 148 VVRVGDKVIDGSVRGKLERLKRAL 171

The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401. Length = 171

>gnl|CDD|223784 COG0712, AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

 Score = 95.0 bits (237), Expect = 2e-25
 Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 3/139 (2%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
           + LK   K +  +  P +    K E L  + +K        N L LLAEN ++  +  ++
Sbjct: 37  EILKNSPKLKQLLSSPAVSAEDKKELLISIFKKIGDPLL-QNFLRLLAENKRLNLLPEIL 95

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
             F  + A  RG +  EV +A  L +   ++L++ L+   K G+ + L  K+DPS+IGG+
Sbjct: 96  EEFLKLAAESRGIVEAEVTSAFELSDEQLTKLEAKLE--KKFGKKVKLNNKIDPSLIGGL 153

Query: 121 IVSVGDKYVDMSVASKIKK 139
           I+ VGD+ +D SV  K+K+
Sbjct: 154 IIKVGDEVIDGSVRGKLKR 172

Length = 178

>gnl|CDD|235593 PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated

 Score = 92.9 bits (232), Expect = 1e-24
 Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
             +  +      +  P +    K + L  V   K+ S    N L +LAENG++  +  ++
Sbjct: 36  AEVAENEDLAALLSSPLVSAEQKKKLLAAVF--KSLSEYVQNFLKVLAENGRLALLPEIL 93

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTL-KLFAKKGENILLTTKVDPSIIGG 119
             F  + A H   +  EV +A PL E    +L++ L K   +K   + L  KVDPS+IGG
Sbjct: 94  EQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKAALEKRLGRK---VKLNEKVDPSLIGG 150

Query: 120 MIVSVGDKYVDMSVASKIKKYTDLLQ 145
           +I+ VGD+ +D SV  K+++  D L+
Sbjct: 151 VIIKVGDRVIDGSVRGKLERLKDALK 176

Length = 177

>gnl|CDD|237386 PRK13429, PRK13429, F0F1 ATP synthase subunit delta; Provisional

 Score = 78.7 bits (195), Expect = 4e-19
 Identities = 38/139 (27%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
           + L+   + RD + +P +    K   L+ +  K   S   +N L LLA+  ++  +  + 
Sbjct: 36  ELLEDSPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLLADRRRLGILPEIA 95

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
             +  +    +G +   V +A PL EA +  ++  L+     G+ + L T VDPS+IGG+
Sbjct: 96  ARYLELADEQKGIVRATVTSAVPLSEAQQEAIRQKLE--KMTGKKVELDTAVDPSLIGGV 153

Query: 121 IVSVGDKYVDMSVASKIKK 139
           +V +GDK +D SV +++++
Sbjct: 154 VVKIGDKVLDASVRTQLRR 172

Length = 181

>gnl|CDD|130215 TIGR01145, ATP_synt_delta, ATP synthase, F1 delta subunit

 Score = 76.6 bits (189), Expect = 2e-18
 Identities = 44/144 (30%), Positives = 81/144 (56%), Gaps = 2/144 (1%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
           + LK + + + F+ +P I    K E +K V   +    +S+NLL LLAENG++  +  ++
Sbjct: 31  EVLKNNKELKKFLSNPLISAEKKKEFIKNVF-GEQLDESSLNLLLLLAENGRLAALPDIL 89

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
           + F  +    +    VEVI+A+PL E  ++++   L+      + + L  KVD  +IGG+
Sbjct: 90  DQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAEKLEKITGAAK-VKLNCKVDKDLIGGV 148

Query: 121 IVSVGDKYVDMSVASKIKKYTDLL 144
           I+ +GD+ +D SV  ++K+ +  L
Sbjct: 149 IIRIGDRVIDGSVRGQLKRLSRQL 172

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity [Energy metabolism, ATP-proton motive force interconversion]. Length = 172

>gnl|CDD|237387 PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 60  INNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGG 119
           ++  S + AA RG     V TA PL +  K  L + L      G  + L ++VDPS++GG
Sbjct: 187 LDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALS--RIYGRPVHLNSEVDPSVLGG 244

Query: 120 MIVSVGDKYVDMSVASKI 137
           M V VGD+ +D SVA ++
Sbjct: 245 MRVQVGDEVIDGSVAGRL 262

Length = 271

>gnl|CDD|177042 CHL00119, atpD, ATP synthase CF1 delta subunit; Validated

 Score = 56.9 bits (138), Expect = 7e-11
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 2/146 (1%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
             L    + + F+ +P I K+ K E +K        +  ++  L +L + G+I  +D +I
Sbjct: 38  TFLNESPELKKFLANPLISKNAKKEVIKKT-FGSQINENTLKFLMVLVDRGRIALLDAII 96

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
             +  ++         EV TA PL  A +  L   LK      E I L   VDPS+IGG 
Sbjct: 97  EKYLELVYKLASIKIAEVSTAVPLSSAQEEALIEKLKEMTNAKE-IKLVITVDPSLIGGF 155

Query: 121 IVSVGDKYVDMSVASKIKKYTDLLQT 146
           ++ +G K +D S+  ++K+    L T
Sbjct: 156 LIKIGSKVIDTSIKGQLKQLASHLDT 181

Length = 184

>gnl|CDD|139571 PRK13434, PRK13434, F0F1 ATP synthase subunit delta; Provisional

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
           Q L  D K R+F L PT+    K E       +   S  ++N L +L   G+   +  + 
Sbjct: 33  QLLFKDEKIRNFFLSPTVSPEEK-EQTLAKNLRGKISDITLNFLGVLLNKGRFIYLPEIQ 91

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
            +F++ +   +G +  ++++   LE A   +L S L    K     +L    D +++GG 
Sbjct: 92  KDFTVELDKKKGRVRAQIVSYPSLEPAQVDKLGSILS--EKFKSEFILEVSEDKNLLGGF 149

Query: 121 IVSVGDKYVDMSVASKI 137
           +V   D  ++ S+AS++
Sbjct: 150 VVQFNDLKIEKSIASQL 166

Length = 184

>gnl|CDD|184054 PRK13441, PRK13441, F0F1 ATP synthase subunit delta; Provisional

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 27/137 (19%), Positives = 60/137 (43%), Gaps = 4/137 (2%)

Query: 7   VKFRDFVLDPTIQKSLKIEALKIVGQ--KKNFSAASINLLALLAENGKIKNIDGVINNFS 64
              ++F  +P ++   K+  +K + +   +       N L L+ EN + K +  +   F 
Sbjct: 39  ESAKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFENFLNLVFENKRQKLLPQIRALFE 98

Query: 65  IIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV 124
                    +PV + TA  L + +   L+  ++ +  +  + +    +D S+I G +V  
Sbjct: 99  YEKILSEQKVPVNLTTAHELSDEELKLLRKFVRKYVLR--DPVFEETIDESLIAGAVVEF 156

Query: 125 GDKYVDMSVASKIKKYT 141
             K +D++V  ++KK  
Sbjct: 157 EGKRLDVTVQGRLKKIA 173

Length = 180

>gnl|CDD|184053 PRK13436, PRK13436, F0F1 ATP synthase subunit delta; Provisional

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 41  INLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFA 100
           +N L +LA+N     I  ++  F  +          E+ T  PL E   S  +S  KL  
Sbjct: 76  VNFLKILAKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFES--KLSK 133

Query: 101 KKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIK 138
           K  + + L  K+DP +I G+ + V +K  + S+ SK+K
Sbjct: 134 KLNKKVHLVNKIDPKLIAGIKIKVDNKVFENSIKSKLK 171

Length = 179

>gnl|CDD|184048 PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 68  AAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDK 127
            A RG++  +V  A  L +A ++ L   L      G  + +   +DP ++GG+ ++VGD+
Sbjct: 369 VARRGEVVAQVSAAAELSDAQRTRLTEVLSRIY--GRPVSVQLHIDPELLGGLSIAVGDE 426

Query: 128 YVDMSVASKIKK 139
            +D +++S++  
Sbjct: 427 VIDGTLSSRLAA 438

Length = 445

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
PRK13434	184	F0F1 ATP synthase subunit delta; Provisional	100.0
PRK13436	179	F0F1 ATP synthase subunit delta; Provisional	100.0
COG0712	178	AtpH F0F1-type ATP synthase, delta subunit (mitoch	100.0
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	100.0
KOG1662|consensus	210		100.0
TIGR01145	172	ATP_synt_delta ATP synthase, F1 delta subunit. Thi	100.0
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	100.0
CHL00119	184	atpD ATP synthase CF1 delta subunit; Validated	100.0
PRK13441	180	F0F1 ATP synthase subunit delta; Provisional	100.0
PRK13429	181	F0F1 ATP synthase subunit delta; Provisional	100.0
PRK08474	176	F0F1 ATP synthase subunit delta; Validated	100.0
PRK05758	177	F0F1 ATP synthase subunit delta; Validated	100.0
PF00213	172	OSCP: ATP synthase delta (OSCP) subunit; InterPro:	100.0
PRK13431	180	F0F1 ATP synthase subunit delta; Provisional	99.86
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	99.8
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	99.4
PRK06669	281	fliH flagellar assembly protein H; Validated	98.03
PRK03963	198	V-type ATP synthase subunit E; Provisional	97.4
PRK02292	188	V-type ATP synthase subunit E; Provisional	97.0
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	97.0
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	96.98
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	95.98
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	95.64
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	95.43
PRK06328	223	type III secretion system protein; Validated	95.3
PRK06937	204	type III secretion system protein; Reviewed	95.25
PRK05687	246	fliH flagellar assembly protein H; Validated	95.16
PRK01558	198	V-type ATP synthase subunit E; Provisional	94.64
PRK09098	233	type III secretion system protein HrpB; Validated	94.25
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	93.91
PRK01194	185	V-type ATP synthase subunit E; Provisional	93.1
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	92.28
PRK13386	236	fliH flagellar assembly protein H; Provisional	91.52
PRK06032	199	fliH flagellar assembly protein H; Validated	91.28
PRK01005	207	V-type ATP synthase subunit E; Provisional	90.6

>PRK13434 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=1.1e-39  Score=243.47  Aligned_cols=142  Identities=23%  Similarity=0.391  Sum_probs=137.7

Q ss_pred             ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749           2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA   81 (148)
Q Consensus         2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa   81 (148)
                      ++.++|+|+.+|.||.++.++|.+++.++++ +++++.+.||+++|++++|+..+++|+++|.++++++.|+..|+|+||
T Consensus        34 ~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~-~~~~~~~~nfl~lL~e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA  112 (184)
T PRK13434         34 LLFKDEKIRNFFLSPTVSPEEKEQTLAKNLR-GKISDITLNFLGVLLNKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSY  112 (184)
T ss_pred             HHHcCHHHHHHHhCCCCCHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEEc
Confidence            5678999999999999999999999999996 579999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749          82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQT  146 (148)
Q Consensus        82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~  146 (148)
                      .|||++|+++|.+.|++++  |+++.++++|||+||||++|++||++||+|++++|++|++.|..
T Consensus       113 ~~Ls~~q~~~l~~~L~k~~--g~~v~l~~~vDpsLIGG~ii~igd~viD~Svk~~L~~l~~~l~~  175 (184)
T PRK13434        113 PSLEPAQVDKLGSILSEKF--KSEFILEVSEDKNLLGGFVVQFNDLKIEKSIASQLGEIKKAMLE  175 (184)
T ss_pred             CCCCHHHHHHHHHHHHHHH--CCEeEEEeeeChHHcCceEEEECCEEEeHhHHHHHHHHHHHHHh
Confidence            9999999999999999999  89999999999999999999999999999999999999999864

>PRK13436 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=1.7e-39  Score=241.44  Aligned_cols=141  Identities=23%  Similarity=0.325  Sum_probs=137.3

Q ss_pred             ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749           2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA   81 (148)
Q Consensus         2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa   81 (148)
                      ++.++|+|+.+|.||.++.++|.+++..+|+ +++++.+.|||++|++++|+.++++|+++|.++++++.|+..|+|+||
T Consensus        38 ~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~-~~~~~~~~nfl~ll~~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA  116 (179)
T PRK13436         38 ILKNNKDLIKLLTSYFIDKEEKFKIIDKIFS-AKIDIYLVNFLKILAKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTT  116 (179)
T ss_pred             HHHcChHHHHHHcCCCCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEec
Confidence            5778999999999999999999999999997 479999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhc
Q psy9749          82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQ  145 (148)
Q Consensus        82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~  145 (148)
                      .|||++|+++|.+.|++++  |+++.++++|||+||||++|++||++||+|++++|+++++.|.
T Consensus       117 ~~Ls~~~~~~i~~~l~~~~--g~~v~l~~~vDpslIGGi~i~~gd~viD~Sik~~L~~l~~~l~  178 (179)
T PRK13436        117 EPLSEVQISRFESKLSKKL--NKKVHLVNKIDPKLIAGIKIKVDNKVFENSIKSKLKELKKQVL  178 (179)
T ss_pred             CCCCHHHHHHHHHHHHHHH--CCeEEEEeecCHHHcCceEEEECCEEeehhHHHHHHHHHHHHh
Confidence            9999999999999999999  8899999999999999999999999999999999999999885

>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

Probab=100.00  E-value=3.7e-37  Score=228.40  Aligned_cols=142  Identities=31%  Similarity=0.471  Sum_probs=135.9

Q ss_pred             CccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEe
Q psy9749           1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVIT   80 (148)
Q Consensus         1 ~l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~s   80 (148)
                      ++++.+|+|+++|.||.++.++|.+++..+|++ ..++++.|||.++++++|+..+++|+.+|..+.++++|+..|+|+|
T Consensus        37 ~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~-~~~~~~~nfL~ll~en~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~S  115 (178)
T COG0712          37 EILKNSPKLKQLLSSPAVSAEDKKELLISIFKK-IGDPLLQNFLRLLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTS  115 (178)
T ss_pred             HHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhcCceEEEEEE
Confidence            467888999999999999999999999999973 4449999999999999999999999999999999999999999999


Q ss_pred             ecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhc
Q psy9749          81 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQ  145 (148)
Q Consensus        81 a~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~  145 (148)
                      |+||+++|+++|.+.+++++  |+++.+.++|||+||||++|++||.++|+|++++|++++..+.
T Consensus       116 A~~Ls~~q~~~l~~~l~k~~--~~~v~i~~~VD~sliGG~iI~vgd~viD~Svr~~L~~l~~~l~  178 (178)
T COG0712         116 AFELSDEQLTKLEAKLEKKF--GKKVKLNNKIDPSLIGGLIIKVGDEVIDGSVRGKLKRLAKALK  178 (178)
T ss_pred             cCCCCHHHHHHHHHHHHHHh--CCCceEEeeeCHHHhCceEEEECCEEEechHHHHHHHHHHhcC
Confidence            99999999999999999999  8999999999999999999999999999999999999998763

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=5.1e-37  Score=241.08  Aligned_cols=142  Identities=27%  Similarity=0.373  Sum_probs=137.8

Q ss_pred             ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749           2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA   81 (148)
Q Consensus         2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa   81 (148)
                      ++.++|+|+.+|.||.++.++|.+++..+|+ +.+++.+.||+.++++++|+.++++|++.|.+++++++|+..|+|+||
T Consensus       130 ~l~~~~~l~~~L~~p~i~~e~K~~ll~~l~~-~~~~~~~~nfl~~lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA  208 (271)
T PRK13430        130 ILASNPELRLALSDRAAPAEAKRELLARLLY-GKVTPVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTA  208 (271)
T ss_pred             HHHcCHHHHHHHhCCCCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEec
Confidence            5778999999999999999999999999997 579999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749          82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQT  146 (148)
Q Consensus        82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~  146 (148)
                      +||+++|+++|.+.|++++  |+++.++++|||+||||++|++||++||+|++++|+++++.|.+
T Consensus       209 ~pLs~~q~~~L~~~L~k~~--g~~V~l~~~VDpsLIGGivI~vGd~viD~Sv~~rL~~L~~~L~~  271 (271)
T PRK13430        209 VPLSDEQKQRLAAALSRIY--GRPVHLNSEVDPSVLGGMRVQVGDEVIDGSVAGRLERLRRRLAG  271 (271)
T ss_pred             CCCCHHHHHHHHHHHHHHH--CCceEEEeeECccccCcEEEEECCEEEehhHHHHHHHHHHHhcC
Confidence            9999999999999999999  89999999999999999999999999999999999999999863

>KOG1662|consensus

Probab=100.00  E-value=1.2e-36  Score=224.00  Aligned_cols=147  Identities=42%  Similarity=0.741  Sum_probs=142.6

Q ss_pred             CccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEe
Q psy9749           1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVIT   80 (148)
Q Consensus         1 ~l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~s   80 (148)
                      |++..+|+|.+|+.||.++.+.|...++++.++.++.+.+.|||.+|+||||+..+..|..+|..++++|+|.+.|+|+|
T Consensus        63 ~v~k~~pk~~~f~~nP~l~~~~k~~~i~di~~~~~~~~~t~NflnlLaeNgRL~~l~~Ivk~F~~lm~ahrGev~~~VtS  142 (210)
T KOG1662|consen   63 QVLKTDPKFAQFVLNPTLTREKKKTAIDDIVEKLKLAPLTKNFLNLLAENGRLNNLTEIVKAFETLMNAHRGEVKVEVTS  142 (210)
T ss_pred             HHHhcChHHHHHhcCCccchHHHHHHHHHHHHHhcccHhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHhCCceEEEEEe
Confidence            56788999999999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             ecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcCC
Q psy9749          81 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQTP  147 (148)
Q Consensus        81 a~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~~  147 (148)
                      |.||++.+.++|++.|++.+++|+++.++++|||||+||++|++||+.+|+||+++++++.+.+.++
T Consensus       143 a~pLd~~~~k~l~~~l~k~l~~gk~l~v~~~vdPSI~GGliVeiGdK~vDmSI~tr~q~l~~ll~~~  209 (210)
T KOG1662|consen  143 AEPLDAKQLKQLEKALQKILGGGKKLKVENKVDPSIIGGLIVEIGDKYVDMSIKTRLQKLNKLLEEP  209 (210)
T ss_pred             cccCChHHHHHHHHHHHHHhcCCceEEEEeecChhhhcceEEEEcCeeEeeeHHHHHHHHHHHhhcc
Confidence            9999999999999999998878899999999999999999999999999999999999999988765

>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit

Probab=100.00  E-value=8.8e-35  Score=214.77  Aligned_cols=141  Identities=32%  Similarity=0.561  Sum_probs=135.9

Q ss_pred             CccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEe
Q psy9749           1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVIT   80 (148)
Q Consensus         1 ~l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~s   80 (148)
                      ++++++|+|++||.||.++.++|.+++..+|+ .++++.+.|||++|++++|+.++++|+.+|.++++++.|...++|+|
T Consensus        31 ~~~~~~~~l~~~l~~p~i~~~~K~~~l~~l~~-~~~~~~~~nfl~~l~~~~r~~~l~~I~~~~~~~~~~~~~~~~~~v~s  109 (172)
T TIGR01145        31 EVLKNNKELKKFLSNPLISAEKKKEFIKNVFG-EQLDESSLNLLLLLAENGRLAALPDILDQFLKLSYEAQQTADVEVIS  109 (172)
T ss_pred             HHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhcCEEEEEEEE
Confidence            46788999999999999999999999999997 57999999999999999999999999999999999999999999999


Q ss_pred             ecCCCHHHHHHHHHHHHHHhcCCC-eEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHh
Q psy9749          81 ARPLEEADKSELQSTLKLFAKKGE-NILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLL  144 (148)
Q Consensus        81 a~~L~~~~~~~l~~~l~~~~~~~~-~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l  144 (148)
                      |+||+++++++|.+.|++++  |+ ++.+.+++||+++||+++++||++||+|++++|++|+++|
T Consensus       110 a~~L~~~~~~~l~~~l~~~~--~~~~v~~~~~vd~~ligGi~i~~~~~~iD~Si~~~L~~l~~~l  172 (172)
T TIGR01145       110 AKPLTEDQQAKIAEKLEKIT--GAAKVKLNCKVDKDLIGGVIIRIGDRVIDGSVRGQLKRLSRQL  172 (172)
T ss_pred             ccCCCHHHHHHHHHHHHHHh--CCCeEEEEEeECHHHhCceEEEECCEEEehhHHHHHHHHHhhC
Confidence            99999999999999999998  66 9999999999999999999999999999999999999875

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=7.6e-35  Score=242.25  Aligned_cols=140  Identities=20%  Similarity=0.341  Sum_probs=136.5

Q ss_pred             ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEE
Q psy9749           2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKK--NFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVI   79 (148)
Q Consensus         2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~--~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~   79 (148)
                      ++.++|+|+.+|.||.+|.++|.+++..+|+ +  ++++.+.||+.++++++|+..+++|+..|.+++++++|+..|+|+
T Consensus       302 ~l~~~~el~~~L~~p~i~~~~K~~ll~~l~~-~~~~~~~~~~nfl~~lv~~~R~~~l~~i~~~~~~l~~~~~g~~~a~Vt  380 (445)
T PRK13428        302 ILDAQPRLAILLSDYTVPADGRVALLRKVLG-GASTVNPVTVALLSQTVELLRGQPAEEAVLFLAELAVARRGEVVAQVS  380 (445)
T ss_pred             HHhcCHHHHHHHhCCCCCHHHHHHHHHHHHh-ccccCCHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHHHCCeeEEEEE
Confidence            5788999999999999999999999999997 4  799999999999999999999999999999999999999999999


Q ss_pred             eecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHh
Q psy9749          80 TARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLL  144 (148)
Q Consensus        80 sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l  144 (148)
                      ||.|||++|+++|.+.|+++|  |+++.++++|||+||||++|++||.+||+|++++|+++++.|
T Consensus       381 sA~pLs~~q~~~L~~~L~k~~--g~~V~l~~~VDpsLiGGivI~vGd~viD~Sv~~rL~~l~~~l  443 (445)
T PRK13428        381 AAAELSDAQRTRLTEVLSRIY--GRPVSVQLHIDPELLGGLSIAVGDEVIDGTLSSRLAAAEAQL  443 (445)
T ss_pred             eecCCCHHHHHHHHHHHHHHH--CCceEEEeeeCchhhCceEEEECCEEeehhHHHHHHHHHhhC
Confidence            999999999999999999999  899999999999999999999999999999999999999886

>CHL00119 atpD ATP synthase CF1 delta subunit; Validated

Probab=100.00  E-value=1.2e-34  Score=216.28  Aligned_cols=144  Identities=28%  Similarity=0.464  Sum_probs=137.7

Q ss_pred             ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749           2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA   81 (148)
Q Consensus         2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa   81 (148)
                      ++.++|+|+++|.||.++.++|.+++..+|+ +++++.+.|||++|++++|+.++++|+.+|.++++++.|+..+.|+||
T Consensus        39 ~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~-~~~~~~~~nfl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa  117 (184)
T CHL00119         39 FLNESPELKKFLANPLISKNAKKEVIKKTFG-SQINENTLKFLMVLVDRGRIALLDAIIEKYLELVYKLASIKIAEVSTA  117 (184)
T ss_pred             HHHcCHHHHHHHhCCCCCHHHHHHHHHHHHH-hccCHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEec
Confidence            5778999999999999999999999999997 479999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcCC
Q psy9749          82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQTP  147 (148)
Q Consensus        82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~~  147 (148)
                      +||+++++++|.+.|+++++ ++++.+.+++||+++||+++++|+++||+|++++|+++++.|..+
T Consensus       118 ~~L~~~~~~~l~~~L~~~~~-~~~v~l~~~vD~~ligGi~i~~g~~~~D~Si~~~L~~l~~~l~~~  182 (184)
T CHL00119        118 VPLSSAQEEALIEKLKEMTN-AKEIKLVITVDPSLIGGFLIKIGSKVIDTSIKGQLKQLASHLDTV  182 (184)
T ss_pred             cCCCHHHHHHHHHHHHHHhC-CCeEEEEeeeChHHhCcEEEEECCEEEeHhHHHHHHHHHHHHHHh
Confidence            99999999999999999882 378999999999999999999999999999999999999998764

>PRK13441 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=6.9e-34  Score=211.46  Aligned_cols=137  Identities=20%  Similarity=0.316  Sum_probs=130.3

Q ss_pred             HHHHhhhCcCCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCC
Q psy9749           8 KFRDFVLDPTIQKSLKIEALKIVGQ--KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLE   85 (148)
Q Consensus         8 ~l~~~l~~p~i~~~~K~~~l~~~~~--~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~   85 (148)
                      +++.+|.||.+|.++|.++++.+++  ++++++.+.|||++|++++|+.++++|++.|..+++++.|+..|+|+||+||+
T Consensus        40 ~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~~nfl~vL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~L~  119 (180)
T PRK13441         40 SAKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFENFLNLVFENKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELS  119 (180)
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhcCeeEEEEEecccCC
Confidence            4578999999999999999999974  34689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749          86 EADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQT  146 (148)
Q Consensus        86 ~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~  146 (148)
                      +++.++|.+.+++++  |+++.+.+++||+||||+++++||+++|+|++++|++|++.|..
T Consensus       120 ~~~~~~i~~~l~k~~--~~~v~l~~~vD~sliGG~~i~ig~~~~D~Sik~~L~~l~~~l~~  178 (180)
T PRK13441        120 DEELKLLRKFVRKYV--LRDPVFEETIDESLIAGAVVEFEGKRLDVTVQGRLKKIAREVLK  178 (180)
T ss_pred             HHHHHHHHHHHHHHH--CCcceEEeeeChHHhCcEEEEECCEEEeHhHHHHHHHHHHHHhh
Confidence            999999999999998  88999999999999999999999999999999999999998854

>PRK13429 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=8.7e-34  Score=210.90  Aligned_cols=143  Identities=27%  Similarity=0.486  Sum_probs=137.6

Q ss_pred             ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749           2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA   81 (148)
Q Consensus         2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa   81 (148)
                      +++++|+|+.+|.||.++.++|.+++++++++.++++.+.|||++|++++|+.++++|+..|.++++++.|...++|+||
T Consensus        37 ~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa  116 (181)
T PRK13429         37 LLEDSPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLLADRRRLGILPEIAARYLELADEQKGIVRATVTSA  116 (181)
T ss_pred             HHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhCCEEEEEEEEe
Confidence            57789999999999999999999999999984349999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749          82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQT  146 (148)
Q Consensus        82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~  146 (148)
                      +||++++.++|.+.|++.+  |+.+.+.+++||+++||+++++||++||+|++++|+++++.|..
T Consensus       117 ~~ls~~~~~~l~~~L~~~~--~~~~~~~~~vd~sligG~~i~~~~~~iD~Si~~~L~~l~~~l~~  179 (181)
T PRK13429        117 VPLSEAQQEAIRQKLEKMT--GKKVELDTAVDPSLIGGVVVKIGDKVLDASVRTQLRRLKETLKK  179 (181)
T ss_pred             ecCCHHHHHHHHHHHHHHH--CCEEEEEeeeChhhhCceEEEECCEEEehhHHHHHHHHHHHHhc
Confidence            9999999999999999998  89999999999999999999999999999999999999998864

>PRK08474 F0F1 ATP synthase subunit delta; Validated

Probab=100.00  E-value=6.9e-34  Score=210.85  Aligned_cols=136  Identities=26%  Similarity=0.318  Sum_probs=129.3

Q ss_pred             ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749           2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA   81 (148)
Q Consensus         2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa   81 (148)
                      ++ ++|+|+.||.||.++.++|.+++..+++  +.++.+.|||++|++++|+.++++|+..|..++++++|+..|+|+||
T Consensus        35 ~~-~~~~l~~~l~~P~i~~~~K~~vi~~~~~--~~~~~~~nFL~vLi~n~R~~~L~~I~~~f~~~~~~~~~~~~~~V~SA  111 (176)
T PRK08474         35 AF-ADEKFKEIISSPEISKEQKIEFLLSFVD--NANAKFQNFIKLLAENKRLELIPAIAKELERQIALKENEYVGVVYSN  111 (176)
T ss_pred             HH-CChhHHHHHhCCCCCHHHHHHHHHHHHh--ccCHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEEC
Confidence            45 4799999999999999999999999997  45899999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749          82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQT  146 (148)
Q Consensus        82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~  146 (148)
                      .|||++|+++|.+.|++++  |+++.+++.+||  |||++|++||++||+|++  |++|+..|.+
T Consensus       112 ~~Ls~~q~~~i~~~l~~~~--g~~v~l~~~vD~--IGG~ii~igd~v~D~s~~--l~~~~~~~~~  170 (176)
T PRK08474        112 EKLSEETLKKLEEKLSKKF--NAKIKLKQKKSD--YDGIKVEVDDLGVEVSFS--KDRLKNQLIE  170 (176)
T ss_pred             ccCCHHHHHHHHHHHHHHh--CCeEEEEEEEcC--CCCEEEEECCEEEEeeee--HHHHHHHHHH
Confidence            9999999999999999998  899999999999  999999999999999776  9999988764

>PRK05758 F0F1 ATP synthase subunit delta; Validated

Probab=100.00  E-value=3.1e-33  Score=207.22  Aligned_cols=140  Identities=31%  Similarity=0.500  Sum_probs=135.5

Q ss_pred             ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749           2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA   81 (148)
Q Consensus         2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa   81 (148)
                      ++.++|+|+.||.||.++.++|.++++++|++  .++.+.|||.+|++++|+.++++|+.+|.+++++..++..++|+||
T Consensus        37 ~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~--~~~~~~nfL~~l~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~v~sa  114 (177)
T PRK05758         37 EVAENEDLAALLSSPLVSAEQKKKLLAAVFKS--LSEYVQNFLKVLAENGRLALLPEILEQFEALRAEHENIVDAEVTSA  114 (177)
T ss_pred             HHhcCHHHHHHHhCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHcCEEEEEEEEc
Confidence            57889999999999999999999999999973  4999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhc
Q psy9749          82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQ  145 (148)
Q Consensus        82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~  145 (148)
                      +||+++++++|.+.|++.+  |+++.+.+++||+++||+++++|++++|+|++++|+++++.|.
T Consensus       115 ~~l~~~~~~~i~~~l~~~~--~~~v~l~~~vd~~ligG~~i~~~~~~~d~Si~~~L~~l~~~l~  176 (177)
T PRK05758        115 FPLSEEQLDKLKAALEKRL--GRKVKLNEKVDPSLIGGVIIKVGDRVIDGSVRGKLERLKDALK  176 (177)
T ss_pred             cCCCHHHHHHHHHHHHHHH--CCeeEEEeeEChHHhCceEEEECCEEeehhHHHHHHHHHHHhc
Confidence            9999999999999999998  8899999999999999999999999999999999999999885

>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=4.8e-37  Score=226.48  Aligned_cols=140  Identities=34%  Similarity=0.555  Sum_probs=100.1

Q ss_pred             ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749           2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA   81 (148)
Q Consensus         2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa   81 (148)
                      ++.++|+|+.+|.||.+|.++|.+++..+|+ +++++.+.|||++|++++|+.++++|+.+|.++++.+.|+..|+|+||
T Consensus        32 ~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~-~~~~~~~~nfL~~l~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~V~sA  110 (172)
T PF00213_consen   32 ILKSNPELRKFLESPFIPKEEKKELLDEIFK-GKLSEETVNFLKLLIDNNRLSLLPEILEEFEELVNEHNGIVEATVTSA  110 (172)
T ss_dssp             HHCCSCCCHHHHT-TTTTCCCCCCCCCHHCT-TT-SCCCCHHHHHHCCTT-CCCHHHHHHHHHHHHHHHCCTS-B-SSS-
T ss_pred             HHhcCHHHHHHHcCccccHHHHHHHHHHHHc-ccCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHcCeEEEEEEEe
Confidence            4678999999999999999999999999997 379999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCC-eEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHh
Q psy9749          82 RPLEEADKSELQSTLKLFAKKGE-NILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLL  144 (148)
Q Consensus        82 ~~L~~~~~~~l~~~l~~~~~~~~-~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l  144 (148)
                      +||+++|+++|.+.+++++  |+ ++.++++|||+||||++|++||++||+|++++|++++++|
T Consensus       111 ~~l~~~q~~~l~~~l~~~~--~~~~v~~~~~vD~sLigG~~i~~~~~~iD~Sv~~~L~~l~~~L  172 (172)
T PF00213_consen  111 FPLSEEQKKKLEKKLKKKY--GKKKVELNYKVDPSLIGGFIIEVGDKVIDASVKSRLEQLKKEL  172 (172)
T ss_dssp             B----SSSTTTTTTCCCTT--TT-------------------------TTTTTTTTTTTT-TTT
T ss_pred             cCCCHHHHHHHHHHHHHHH--CCCeeeEEEEEccccCcEEEEEECCEEEehhHHHHHHHHHhcC
Confidence            9999999999999999999  66 8999999999999999999999999999999999998765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.

>PRK13431 F0F1 ATP synthase subunit delta; Provisional

Probab=99.86  E-value=7.9e-21  Score=140.94  Aligned_cols=123  Identities=11%  Similarity=0.185  Sum_probs=110.0

Q ss_pred             ccccchHHHHhhhCcCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEE
Q psy9749           2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQ---KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEV   78 (148)
Q Consensus         2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~---~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v   78 (148)
                      +|.. ++|+.++.+|.+  ++|.+++.++|.   ...+++.+.||+++|++|+|+..+|+|+..   +++++.|+..|+|
T Consensus        39 ~f~~-~el~~il~~P~~--~~Kkk~l~~l~~~a~~~~~~~~~~NFl~LL~en~Rl~~LpeIa~~---L~~~~~~i~~~~V  112 (180)
T PRK13431         39 AIKL-HKLNQVLAHVSL--KVKKEVVFEILEKITSIKACSVLKPVMEVVLKNNRLDMLELITEE---LSFDSKRTLEATL  112 (180)
T ss_pred             HHcc-HHHHHHHhCccH--HHHHHHHHHHHhhhccccccHHHHHHHHHHHHcChHHHHHHHHHH---HHHHHcCeEEEEE
Confidence            3455 799999999999  778887777775   136899999999999999999999999994   9999999999999


Q ss_pred             EeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHH
Q psy9749          79 ITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVA  134 (148)
Q Consensus        79 ~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~  134 (148)
                      +||+||++++.++|.+.|++++  |+++.+...+++  .-|++|.++|.-++.|..
T Consensus       113 ~SA~~Ls~~~~~~I~~~L~kk~--g~kV~L~~~~~~--~~gik~~v~~lg~ei~fs  164 (180)
T PRK13431        113 LVPEKLENNELEAVQQKLQARF--NAPVEIAQDTWS--KKGVSLSVSSLDLEIGFS  164 (180)
T ss_pred             EecccCCHHHHHHHHHHHHHHH--CCeEEEEeeccC--CCceEEEEecCceEEEee
Confidence            9999999999999999999999  889999999998  599999999887777665

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=99.80  E-value=1.1e-18  Score=135.55  Aligned_cols=98  Identities=20%  Similarity=0.357  Sum_probs=80.3

Q ss_pred             HHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeE
Q psy9749          42 NLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMI  121 (148)
Q Consensus        42 nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~  121 (148)
                      .++.-+++  ++..+|+--..+........| ..++|+||+|||++++++|.+.|++.+  |+++.+.+.+||+|||||+
T Consensus       148 ~lid~~i~--~l~~l~~~~~~~l~~~~~~~~-~~~~v~sa~~l~~~~~~~i~~~l~~~~--~~~v~~~~~vdp~ligGi~  222 (246)
T TIGR03321       148 RMVDVFVQ--RLRTLDPDEKAALAEALADSG-NPVLVRSAFELPEEQREQIRDTIRETL--GPEIRLRFQTEPDLIGGIE  222 (246)
T ss_pred             HHHHHHHH--HhhcCCHHHHHHHHHHHhCCC-CceEEEecCCCCHHHHHHHHHHHHHHH--CCCeeEEeeeCchhcCceE
Confidence            45555554  455555554444433333333 569999999999999999999999999  8899999999999999999


Q ss_pred             EEECCEEeehhHHHHHHHHHHHh
Q psy9749         122 VSVGDKYVDMSVASKIKKYTDLL  144 (148)
Q Consensus       122 i~vg~~~iD~Sv~~~L~~l~~~l  144 (148)
                      |++||++||||++++|++|++.+
T Consensus       223 l~~g~~~id~Si~~~L~~l~~~~  245 (246)
T TIGR03321       223 LTAGGHKLAWSVDDYLESLEEDV  245 (246)
T ss_pred             EEECCEEEechHHHHHHHHHhhc
Confidence            99999999999999999999876

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=99.40  E-value=3.5e-12  Score=99.40  Aligned_cols=74  Identities=12%  Similarity=0.124  Sum_probs=69.2

Q ss_pred             cCCccEEEEeecCCCHHHHHHHHHHHHH-HhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749          71 RGDLPVEVITARPLEEADKSELQSTLKL-FAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQT  146 (148)
Q Consensus        71 ~~~~~~~v~sa~~L~~~~~~~l~~~l~~-~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~  146 (148)
                      .+...+.|+||+||++++++++++.|.. .+  |..+.+.|.+||+||+|+.+++||+.+.||+.++|+.|...+..
T Consensus       173 ~~~~~~~i~ta~~l~~~~~~~~~~~l~~~~~--~~~~~~~f~~~p~li~Giel~~~~~~i~ws~~~yl~~l~~~~~~  247 (250)
T PRK14474        173 TTPEMLRIRTSFELSQDLRAQILESLHQTHL--IPGTDIHFVTSPELICGIELKTEGYKIAWTLAEYLDALESQLTT  247 (250)
T ss_pred             cCCCCeEEEeCCCCCHHHHHHHHHHHHHHhc--CCCCceeeecCcccccCeEEecCCceEeccHHHHHHHHHHHHHH
Confidence            4566799999999999999999999999 88  88999999999999999999999999999999999999987754

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=98.03  E-value=5e-06  Score=65.82  Aligned_cols=102  Identities=15%  Similarity=0.175  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCcc-
Q psy9749          39 ASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSII-  117 (148)
Q Consensus        39 ~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~li-  117 (148)
                      ...+++..+.++++...++.|-+.+..+.+    ...++|+. .|-+-+........+...+  +....+.+..||++- 
T Consensus       175 iaekvi~~~~~~~~~~i~~li~~al~~l~~----~~~i~I~V-~p~d~~~l~~~~~~l~~~l--~~~~~i~I~~D~~l~~  247 (281)
T PRK06669        175 IAKKVIKEISENSKEIALALVKELLKEVKD----ATDITIRV-NPEDYEYVKEQKDELISLL--DNEEHLKIYEDDAISK  247 (281)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHcCc----CCcEEEEE-CHHHHHHHHHhHHHHHHhc--CCCCCeEEEECCCCCC
Confidence            345777777888777666666666665543    23355544 3322233333333344445  444567777777664 


Q ss_pred             ceeEEEECCEEeehhHHHHHHHHHHHhcCC
Q psy9749         118 GGMIVSVGDKYVDMSVASKIKKYTDLLQTP  147 (148)
Q Consensus       118 gGi~i~vg~~~iD~Sv~~~L~~l~~~l~~~  147 (148)
                      ||.+|+.++-.+|+|+.++|+++++.|.++
T Consensus       248 GgcvIet~~G~IDasi~tqLe~l~~~L~e~  277 (281)
T PRK06669        248 GGCVIETDFGNIDARIDTQLKQLKEKLLEN  277 (281)
T ss_pred             CCeEEEcCCCeeeccHHHHHHHHHHHHHhh
Confidence            999999999999999999999999998764

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=97.40  E-value=0.018  Score=43.06  Aligned_cols=85  Identities=15%  Similarity=0.139  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEE--ECCEEeehhHH
Q psy9749          57 DGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVS--VGDKYVDMSVA  134 (148)
Q Consensus        57 ~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~--vg~~~iD~Sv~  134 (148)
                      ..++..+..-.....+...+.|+ +.|=+.+-.+.....+.+.+  | .+.+...-++..+|||++.  -|+.++|.|+.
T Consensus       103 ~~~l~~li~~a~~~l~~~~i~i~-~~~~D~~~~~~~~~~~~~~~--~-~~~i~~~~~~~~~GGvil~s~~g~i~~dnT~e  178 (198)
T PRK03963        103 FETLKALTKEAVEELGEDKVVVR-SNERTLKLIDSRLEEIRDEL--G-DVEIELGEPIETIGGVIVETKDGTIRVDNTFE  178 (198)
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEE-EccccHHHHHHHHHHHHHHh--C-CeEEEECCCCCccceEEEEeCCCCEEEeCcHH
Confidence            34444444333333333334444 34434444444445555555  4 3444433345679999998  67788999999


Q ss_pred             HHHHHHHHHhc
Q psy9749         135 SKIKKYTDLLQ  145 (148)
Q Consensus       135 ~~L~~l~~~l~  145 (148)
                      ++|+.++..+.
T Consensus       179 ~~l~~~~~~~~  189 (198)
T PRK03963        179 ARMERLESELR  189 (198)
T ss_pred             HHHHHHHHHhH
Confidence            99999988764

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=97.00  E-value=0.011  Score=44.02  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=29.9

Q ss_pred             eeCCCccceeEEE--ECCEEeehhHHHHHHHHHHHhc
Q psy9749         111 KVDPSIIGGMIVS--VGDKYVDMSVASKIKKYTDLLQ  145 (148)
Q Consensus       111 ~vD~~ligGi~i~--vg~~~iD~Sv~~~L~~l~~~l~  145 (148)
                      .-+++.+|||++.  -|+-++|.|+.++|+.+...+.
T Consensus       142 ~~~~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~  178 (188)
T PRK02292        142 AGNIDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNL  178 (188)
T ss_pred             CCCCCCCceEEEEecCCceEEeccHHHHHHHHHHHhh
Confidence            3468899999998  5778899999999999988764

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=97.00  E-value=0.0029  Score=50.03  Aligned_cols=58  Identities=16%  Similarity=0.218  Sum_probs=48.4

Q ss_pred             ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHH
Q psy9749           2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVIN   61 (148)
Q Consensus         2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~   61 (148)
                      ++..+|.++..|+||..|.+.|..++..+|+ +++++.+.+++..++.. |++.=+++.+
T Consensus        40 ~l~~~~~lrral~dp~~~~~~k~~L~~~l~~-~kv~~~~~~~~~~~v~~-rWs~~~dl~~   97 (271)
T PRK13430         40 VLDRERSLRRALTDPARPPEAKVELVKRLFG-GKVSPATLEVVSDAVRQ-RWSRPRDLAD   97 (271)
T ss_pred             HHccchHHHHhcCCCCCChHHHHHHHHHHhc-ccCCHHHHHHHHHHHHh-hccCchhHHH
Confidence            5788999999999999999999999999997 68999999999988875 3333333333

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=96.98  E-value=0.0057  Score=47.84  Aligned_cols=82  Identities=13%  Similarity=0.114  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHH---HHHHHHHhcCCCeEEEeeeeCCCcc-ceeEEEECCEEeeh
Q psy9749          56 IDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSEL---QSTLKLFAKKGENILLTTKVDPSII-GGMIVSVGDKYVDM  131 (148)
Q Consensus        56 l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l---~~~l~~~~~~~~~i~l~~~vD~~li-gGi~i~vg~~~iD~  131 (148)
                      +..++..+...+.   +...++|+.    ++++.+.+   ...+...+  +....+....||+|- ||.+|..++=.+|+
T Consensus       161 i~~lv~~al~~l~---~~~~i~I~v----~p~d~~~v~~~~~~l~~~~--~~~~~i~i~~D~~l~~GgcvIEt~~G~iDa  231 (255)
T TIGR03825       161 FQALVRQVLSEVR---EFDEVSIYV----HPHWYERVAAQKDELQSIL--PACEHLAVYPDEKLPDGGCYVETNFGRIDA  231 (255)
T ss_pred             HHHHHHHHHHhcc---CCCcEEEEE----CHHHHHHHHHhHHHHHhhc--CCCCceEEEeCCCCCCCCeEEEcCCceEEe
Confidence            4444444444333   233455543    34444444   44455555  445678899999997 99999999999999


Q ss_pred             hHHHHHHHHHHHhcC
Q psy9749         132 SVASKIKKYTDLLQT  146 (148)
Q Consensus       132 Sv~~~L~~l~~~l~~  146 (148)
                      |+.++|++++..|.+
T Consensus       232 sldtqLe~l~~~l~~  246 (255)
T TIGR03825       232 SVDTQLEQLKEKLLE  246 (255)
T ss_pred             eHHHHHHHHHHHHHH
Confidence            999999999998754

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=95.98  E-value=0.094  Score=35.96  Aligned_cols=64  Identities=19%  Similarity=0.268  Sum_probs=47.5

Q ss_pred             hcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCcc-ceeEEEECCEEeehhHHHHHHHH
Q psy9749          70 HRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSII-GGMIVSVGDKYVDMSVASKIKKY  140 (148)
Q Consensus        70 ~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~li-gGi~i~vg~~~iD~Sv~~~L~~l  140 (148)
                      ..+...++|+    +++++.+.+.+.+.....   ...+.+..||++- ||++|+.++-.+|+|+.++|+++
T Consensus        64 ~~~~~~v~I~----v~p~d~~~l~~~~~~~~~---~~~~~l~~D~~l~~G~c~iet~~g~iD~~i~~ql~~l  128 (128)
T PF02108_consen   64 PRDEEKVTIR----VHPDDYEALEELLEDELP---ELGWELVADPSLAPGDCRIETEDGIIDASIETQLEAL  128 (128)
T ss_pred             hccCCCeEEE----ECHHHHHHHHHHHHHHHh---hcCCEEEecCCCCCCCEEEEECCeeEEeCHHHHHhcC
Confidence            3334445555    368889999988885542   2223888888864 67999999999999999999864

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.64  E-value=0.017  Score=42.79  Aligned_cols=87  Identities=22%  Similarity=0.286  Sum_probs=54.1

Q ss_pred             cHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHH---HHHhcCC-CeEEEeeeeCC----CccceeEEEE--
Q psy9749          55 NIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTL---KLFAKKG-ENILLTTKVDP----SIIGGMIVSV--  124 (148)
Q Consensus        55 ~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l---~~~~~~~-~~i~l~~~vD~----~ligGi~i~v--  124 (148)
                      ....++..+........+...+.|+.    ++++...+.+.+   .+.++.+ ....+....|+    +++|||+|..  
T Consensus        94 ~Y~~~L~~li~~~~~~~~~~~~~v~~----~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~il~~~d  169 (198)
T PF01991_consen   94 DYKKFLKKLIEEAAEKLGEGEVIVYV----NKKDLELVKEILKRIKKELKSKAGKDSVEVSVDSDYLIDIIGGFILESED  169 (198)
T ss_dssp             THHHHHHHHHHHHHHCCTTSCEEEEE----CCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T---BSSSSEEEEECSS
T ss_pred             HHHHHHHHHHHHHHHHhcCCceEEec----ccchHHHHHHHHHHHHHHHHHHhCCCcceeecCccccCCccceEEEEECC
Confidence            46677777776666655555566653    333444444432   2223110 11124556665    8999999996  


Q ss_pred             CCEEeehhHHHHHHHHHHHhc
Q psy9749         125 GDKYVDMSVASKIKKYTDLLQ  145 (148)
Q Consensus       125 g~~~iD~Sv~~~L~~l~~~l~  145 (148)
                      |+..+|+|+.++|+.+...+.
T Consensus       170 g~i~vd~T~e~~l~~~~~~~~  190 (198)
T PF01991_consen  170 GKIRVDNTFESRLERLKEEIR  190 (198)
T ss_dssp             SSCEEEEEHHHHHHHCHHHHH
T ss_pred             CCEEEECCHHHHHHHHHHHhH
Confidence            579999999999999887664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=95.43  E-value=0.054  Score=45.76  Aligned_cols=59  Identities=12%  Similarity=0.196  Sum_probs=48.4

Q ss_pred             ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHH
Q psy9749           2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINN   62 (148)
Q Consensus         2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~   62 (148)
                      ++..++.|+..|+||.-|.+.|..++..+|+ +++++.+..++.-++.. |++.=.++...
T Consensus       212 ~l~~~~~lrr~l~d~~~~~~~k~~l~~~l~~-~~~~~~~~~~~~~~~~~-rws~~~dl~~~  270 (445)
T PRK13428        212 LLDREPVLTKHLTEPAEDAAPKIRLVERLFS-GKVGAPTLEVLRTAVSQ-RWSANSDLIDA  270 (445)
T ss_pred             HHcccHHHHHHcCCCCCChhhHHHHHHHHhC-cCCCHHHHHHHHHHHhC-ccCccccHHHH
Confidence            5788999999999999999999999999997 68999999999888764 44333333333

>PRK06328 type III secretion system protein; Validated

Probab=95.30  E-value=0.14  Score=39.33  Aligned_cols=68  Identities=10%  Similarity=0.155  Sum_probs=51.0

Q ss_pred             CccEEEEeecCCCHHHHHHHHHHH---HHHhcCCCeEEEeeeeCCCcc-ceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749          73 DLPVEVITARPLEEADKSELQSTL---KLFAKKGENILLTTKVDPSII-GGMIVSVGDKYVDMSVASKIKKYTDLLQT  146 (148)
Q Consensus        73 ~~~~~v~sa~~L~~~~~~~l~~~l---~~~~~~~~~i~l~~~vD~~li-gGi~i~vg~~~iD~Sv~~~L~~l~~~l~~  146 (148)
                      ...++|+    +++++.+.+.+..   ...+  +....+....||+|- ||.+|+.+.=.+|+|+.++|+.+++.+.+
T Consensus       131 ~~~v~I~----VnP~D~~~v~~~~~~l~~~~--~~~~~~~I~~D~~L~~GgCiIET~~G~VDasle~ql~~l~~al~~  202 (223)
T PRK06328        131 HKRIIIH----VNPKDLAIVEKSRPELKKIV--EYADSLIISPKADVTPGGCIIETEAGIINAQLDVQLAALEKAFST  202 (223)
T ss_pred             CCceEEE----ECHHHHHHHHHHHHHHHHhc--cCCCceEEEeCCCCCCCCeEEEeCCceEEecHHHHHHHHHHHHHH
Confidence            3345554    4566777776654   4444  334578899999885 66999999999999999999999988754

>PRK06937 type III secretion system protein; Reviewed

Probab=95.25  E-value=0.25  Score=37.28  Aligned_cols=74  Identities=15%  Similarity=0.195  Sum_probs=53.5

Q ss_pred             HhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcC-CCeEEEeeeeCCCcc-ceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749          69 AHRGDLPVEVITARPLEEADKSELQSTLKLFAKK-GENILLTTKVDPSII-GGMIVSVGDKYVDMSVASKIKKYTDLLQT  146 (148)
Q Consensus        69 ~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~-~~~i~l~~~vD~~li-gGi~i~vg~~~iD~Sv~~~L~~l~~~l~~  146 (148)
                      ...+...+.|+    +++++.+.+.+.+...+.. +..-.+....||+|- ||.+|+.+.=.+|+|+.++|+.+++.|.+
T Consensus       126 ~l~~~~~v~I~----V~P~D~~~v~~~~~~~~~~~~~~~~l~i~~D~~L~~Ggc~iET~~G~vDasl~tql~~l~~al~~  201 (204)
T PRK06937        126 LVSNQKQVVVR----VNPDQAAAVREQIAKVLKDFPEVGYLEVVADARLDQGGCILETEVGIIDASLDGQLEALEQAFHS  201 (204)
T ss_pred             hcccCCeEEEE----ECHHHHHHHHHHHHHHHHhCCCCccEEEEeCCCCCCCCeEEecCCceEEccHHHHHHHHHHHHHH
Confidence            33344455555    4567777777765543310 223458889999975 77999999999999999999999998865

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=95.16  E-value=0.13  Score=39.81  Aligned_cols=60  Identities=22%  Similarity=0.214  Sum_probs=49.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCcc-ceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749          84 LEEADKSELQSTLKLFAKKGENILLTTKVDPSII-GGMIVSVGDKYVDMSVASKIKKYTDLLQT  146 (148)
Q Consensus        84 L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~li-gGi~i~vg~~~iD~Sv~~~L~~l~~~l~~  146 (148)
                      +.+++.+.+++.+...+.   .-.+....||+|- ||.+|..++-.+|+|+.++++++.+.|..
T Consensus       182 v~P~D~~~v~~~~~~~~~---~~~~~l~~D~~l~~Ggc~iet~~g~vDa~l~~r~~~l~~~l~~  242 (246)
T PRK05687        182 VNPDDLELVEQLLGAELS---LHGWRLLADPSLHRGGCRISAEEGDVDASLETRWQEVCRLLAP  242 (246)
T ss_pred             ECHHHHHHHHHHHhhHHH---hCCeEEEeCCCcCCCCeEEEeCCCceeccHHHHHHHHHHHHhc
Confidence            578889999888775441   1247889999986 78999999999999999999999998764

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=94.64  E-value=0.4  Score=36.13  Aligned_cols=64  Identities=30%  Similarity=0.285  Sum_probs=43.7

Q ss_pred             ccEEEEeecCCCHHHHHHHHH----HHHHHhcCCCeEEEeeeeCCCccceeEEE--ECCEEeehhHHHHHHHHHHHhc
Q psy9749          74 LPVEVITARPLEEADKSELQS----TLKLFAKKGENILLTTKVDPSIIGGMIVS--VGDKYVDMSVASKIKKYTDLLQ  145 (148)
Q Consensus        74 ~~~~v~sa~~L~~~~~~~l~~----~l~~~~~~~~~i~l~~~vD~~ligGi~i~--vg~~~iD~Sv~~~L~~l~~~l~  145 (148)
                      ..+.|++    ++++...+.+    .+.+.+  +..+.+  ..+...+|||+|.  =|+..+|.|..+..+-|+..|.
T Consensus       119 ~~~~I~~----~~~D~~~l~~~~~~~~~~~l--~~gi~i--~~~~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~  188 (198)
T PRK01558        119 DKLEIIL----NESDLSELESILRAALGNKL--KKGIEL--KPFKGISKGFKIQQKDGSLYYDFSAEAIADILFSYLN  188 (198)
T ss_pred             CCeeEEE----CHHHHHHhHHHHHHHHHHHh--cCCeEE--cccCCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhc
Confidence            4455553    3444544444    444555  344444  4456699999999  6999999999999999988764

>PRK09098 type III secretion system protein HrpB; Validated

Probab=94.25  E-value=0.5  Score=36.62  Aligned_cols=63  Identities=17%  Similarity=0.256  Sum_probs=49.4

Q ss_pred             CCHHHHHHHHHHHHHHhc-CCCeEEEeeeeCCCcc-ceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749          84 LEEADKSELQSTLKLFAK-KGENILLTTKVDPSII-GGMIVSVGDKYVDMSVASKIKKYTDLLQT  146 (148)
Q Consensus        84 L~~~~~~~l~~~l~~~~~-~~~~i~l~~~vD~~li-gGi~i~vg~~~iD~Sv~~~L~~l~~~l~~  146 (148)
                      +++++.+.+.+.+..... .|....+...-||+|- ||.+|+.++=.+|+|+.++|+.+++.+.+
T Consensus       157 V~P~D~~~v~~~~~~~~~~~g~~~~l~Iv~Dp~L~~GgCviET~~G~IDasl~~ql~~L~~al~~  221 (233)
T PRK09098        157 VHPADLDAARAAFGAAAAAGGRNVPVEVVGDPRLAPGACVCEWDFGVFDASLDTQLRALRRALAR  221 (233)
T ss_pred             ECHHHHHHHHHHHHHHHHhcCCCcceEEEeCCCCCCCCeEEEeCCCeEecCHHHHHHHHHHHHHH
Confidence            356667777766554321 2566788999999997 66999999999999999999999987754

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=93.91  E-value=1.3  Score=33.44  Aligned_cols=93  Identities=18%  Similarity=0.175  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccce
Q psy9749          40 SINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGG  119 (148)
Q Consensus        40 ~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligG  119 (148)
                      +..-|.-+....+...    +..+..-.........+.|+++..    ....+.+.+..     ..+........+.+||
T Consensus        90 ~~e~L~~i~~~~~~~~----l~~ll~~~~~~~~~~~~iV~~~e~----d~~~v~~~~~~-----~~~~~~~~~~~d~~GG  156 (194)
T COG1390          90 VEEKLRNIASDPEYES----LQELLIEALEKLLGGELVVYLNEK----DKALVEQILRE-----LKIGVELGEGIDIIGG  156 (194)
T ss_pred             HHHHHHcCcCCcchHH----HHHHHHHHHHhcCCCCeEEEeCcc----cHHHHHHHHhh-----cccchhccccCCCcce
Confidence            3333444444444433    333333333344444455555443    23333333332     1222333333567899


Q ss_pred             eEEEE--CCEEeehhHHHHHHHHHHHhc
Q psy9749         120 MIVSV--GDKYVDMSVASKIKKYTDLLQ  145 (148)
Q Consensus       120 i~i~v--g~~~iD~Sv~~~L~~l~~~l~  145 (148)
                      +++..  |...+|.|+.+.|+.+...+.
T Consensus       157 vvv~~~dG~i~~dnt~~sil~~~~e~~~  184 (194)
T COG1390         157 VVVESRDGKIRLDNTFESILERVLEELL  184 (194)
T ss_pred             EEEEeCCCceeecCcHHHHHHHHHHHHH
Confidence            99999  668999999999999887653

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=93.10  E-value=1.1  Score=33.32  Aligned_cols=33  Identities=21%  Similarity=0.380  Sum_probs=28.7

Q ss_pred             CCCccceeEEE--ECCEEeehhHHHHHHHHHHHhc
Q psy9749         113 DPSIIGGMIVS--VGDKYVDMSVASKIKKYTDLLQ  145 (148)
Q Consensus       113 D~~ligGi~i~--vg~~~iD~Sv~~~L~~l~~~l~  145 (148)
                      +++.+|||++.  -|+..+|+|+..-++++...+.
T Consensus       142 ~~~~~GGvil~s~dG~I~ld~~l~~~~~~~~~~iR  176 (185)
T PRK01194        142 DIDPYGGILAYSRDGKRELDLRLSSIFENILEDLK  176 (185)
T ss_pred             CccccccEEEEeCCCcEEehhhHHHHHHHhHHHHH
Confidence            57799999999  7999999999999988876653

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=92.28  E-value=1.2  Score=34.49  Aligned_cols=61  Identities=20%  Similarity=0.261  Sum_probs=47.5

Q ss_pred             CCHHHHHHHHHHHHHHhc-CCCeEEEeeeeCCCc-cceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749          84 LEEADKSELQSTLKLFAK-KGENILLTTKVDPSI-IGGMIVSVGDKYVDMSVASKIKKYTDLLQT  146 (148)
Q Consensus        84 L~~~~~~~l~~~l~~~~~-~~~~i~l~~~vD~~l-igGi~i~vg~~~iD~Sv~~~L~~l~~~l~~  146 (148)
                      +.+++.+.+++.+....+ .+..  +...-||++ -||-+|..+.=.+|+|+.+||.++++.+.+
T Consensus       164 VnP~d~e~i~~~~~~~~~~~~~~--l~l~~D~~l~~GgC~IeTe~G~iDasld~ql~~L~~~~~~  226 (234)
T COG1317         164 VNPDDLEIIRQQLDEELSLLGWR--LELVADPALSPGGCIIETEFGIIDASLDTQLAALKRALLE  226 (234)
T ss_pred             ECHHHHHHHHHHHHHHHhhcchh--eeeccCCCCCCCCeEEEecCccccccHHHHHHHHHHHHHh
Confidence            467788888887754321 0223  778888887 489999999999999999999999998764

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=91.52  E-value=1.2  Score=34.48  Aligned_cols=57  Identities=14%  Similarity=0.165  Sum_probs=45.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCc-cceeEEEECCEEeehhHHHHHHHHHHHhc
Q psy9749          84 LEEADKSELQSTLKLFAKKGENILLTTKVDPSI-IGGMIVSVGDKYVDMSVASKIKKYTDLLQ  145 (148)
Q Consensus        84 L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~l-igGi~i~vg~~~iD~Sv~~~L~~l~~~l~  145 (148)
                      +++++.+.|.+.+....     -.+....||+| -||.+|..++-.+|+|+.+||+++-..+.
T Consensus       169 vnP~D~~~l~~~~~e~~-----~~~~l~~D~~l~~GgC~Iet~~g~iDa~ietRl~~~~~~l~  226 (236)
T PRK13386        169 LNPEEFGRLKDLAPEKV-----QAWGLVADPSLSAGECRIVTDTSEADAGCEHRLDACMDAVK  226 (236)
T ss_pred             ECHHHHHHHHHhhhccc-----cCeEEEeCCCcCCCCEEEEeCCceEeeCHHHHHHHHHHHHH
Confidence            57888888887765432     24677888887 49999999999999999999998777654

>PRK06032 fliH flagellar assembly protein H; Validated

Probab=91.28  E-value=2.9  Score=31.39  Aligned_cols=76  Identities=16%  Similarity=0.093  Sum_probs=53.4

Q ss_pred             HHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhc-CCCeEEEeeeeCCCc-cceeEEEECCEEeehhHHHHHHHHHHHh
Q psy9749          67 MAAHRGDLPVEVITARPLEEADKSELQSTLKLFAK-KGENILLTTKVDPSI-IGGMIVSVGDKYVDMSVASKIKKYTDLL  144 (148)
Q Consensus        67 ~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~-~~~~i~l~~~vD~~l-igGi~i~vg~~~iD~Sv~~~L~~l~~~l  144 (148)
                      .....+.-.+.|+.    +++..+.+++.+..... .|....+....||+| -||.+|+.++=.+|.+..+...++...+
T Consensus       121 l~~l~~~~~v~I~v----~P~d~~~l~~~l~~~~~~~~~~~~~~l~~D~~L~~G~c~vet~~G~vd~d~~~~~~~I~~al  196 (199)
T PRK06032        121 LRHLVATPHLVVRV----NDALVEAARERLERLARESGFEGRLVVLADPDMAPGDCRLEWADGGVVRDRAAIEARIEEAV  196 (199)
T ss_pred             HHHhcCCCcEEEEE----CHHHHHHHHHHHHHHHHhcCcCccEEEeeCCCCCCCCeEEEeCCCeEecCHHHHHHHHHHHh
Confidence            33334433455553    34455556555544221 155678999999998 5899999999999999999999998887


Q ss_pred             cC
Q psy9749         145 QT  146 (148)
Q Consensus       145 ~~  146 (148)
                      .+
T Consensus       197 ~~  198 (199)
T PRK06032        197 GR  198 (199)
T ss_pred             hc
Confidence            64

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=90.60  E-value=6.2  Score=30.04  Aligned_cols=56  Identities=20%  Similarity=0.248  Sum_probs=36.0

Q ss_pred             CCHHHHHH-HHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE--CCEEeehhHHHHHHHHHHHhc
Q psy9749          84 LEEADKSE-LQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV--GDKYVDMSVASKIKKYTDLLQ  145 (148)
Q Consensus        84 L~~~~~~~-l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v--g~~~iD~Sv~~~L~~l~~~l~  145 (148)
                      .+++..+. +...+.+.+. ...+.+...     .|||+|+.  |+..+|.|..+.++.+...+.
T Consensus       139 ~~~~~~~~~~~~~~~~~l~-~~gv~~~~~-----~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~  197 (207)
T PRK01005        139 VSARAVNELLGKEVTKKLK-EKGVSVGSF-----VGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQ  197 (207)
T ss_pred             CCHHHHHHHHHHHHHHHHH-HcCeEEecc-----CCceEEEecCCeeEEeCcHHHHHHHHHHHhh
Confidence            35554444 3444344331 233444432     59999999  667799999999998887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
2wss_S	190	The Structure Of The Membrane Extrinsic Region Of B		3e-22
2bo5_A	120	Bovine Oligomycin Sensitivity Conferral Protein N-T		4e-07

>pdb|2WSS|S Chain S, The Structure Of The Membrane Extrinsic Region Of Bovine Atp Synthase Length = 190

Iteration: 1
 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 78/129 (60%)
Query: 13  VLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIMAAHRG 72
           +L+P +++S+K+++L     K+ F            ENG++ N   VI+ FS   + HRG
Sbjct: 55  LLNPYVKRSVKVKSLSDXTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTXXSVHRG 114
Query: 73  DLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMS 132
           ++P  V TA  L+E   +EL++ LK F  KG+ + L  K+DPSI GG IV +G+KYVD S
Sbjct: 115 EVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIXGGXIVRIGEKYVDXS 174
Query: 133 VASKIKKYT 141
             +KI+K +
Sbjct: 175 AKTKIQKLS 183

>pdb|2BO5|A Chain A, Bovine Oligomycin Sensitivity Conferral Protein N-Terminal Domain Length = 120

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 13  VLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIMAAHRG 72
           +L+P +++S+K+++L  +  K+ F            ENG++ N   VI+ FS +M+ HRG
Sbjct: 55  LLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRG 114
Query: 73  DLPVEV 78
           ++P  V
Sbjct: 115 EVPCTV 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	2e-38
1abv_A	134	Delta subunit of the F1F0-ATP synthase; ATP synthe	2e-14

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A Length = 190

 Score =  127 bits (322), Expect = 2e-38
 Identities = 60/145 (41%), Positives = 97/145 (66%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
             +  + K    +L+P +++S+K+++L  +  K+ FS  + NL+ LLAENG++ N   VI
Sbjct: 43  GQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVI 102

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
           + FS +M+ HRG++P  V TA  L+E   +EL++ LK F  KG+ + L  K+DPSI+GGM
Sbjct: 103 SAFSTMMSVHRGEVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGM 162

Query: 121 IVSVGDKYVDMSVASKIKKYTDLLQ 145
           IV +G+KYVDMS  +KI+K +  ++
Sbjct: 163 IVRIGEKYVDMSAKTKIQKLSRAMR 187

>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B Length = 134

 Score = 65.0 bits (159), Expect = 2e-14
 Identities = 17/97 (17%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 1   QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
             +  + +  + +      ++L    + + G++        NL+ ++AENG++  +  V+
Sbjct: 35  AEVTKNEQMAELLSGALAPETLAESFIAVCGEQ--LDENGQNLIRVMAENGRLNALPDVL 92

Query: 61  NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLK 97
             F  + A       V+VI+A  L E   +++ + ++
Sbjct: 93  EQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAME 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	100.0
1abv_A	134	Delta subunit of the F1F0-ATP synthase; ATP synthe	99.88
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	97.33
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	96.94
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	96.33
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	94.96
3tuf_A	197	Stage III sporulation protein AH; intercellular si	81.84

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A

Probab=100.00  E-value=4.4e-39  Score=240.16  Aligned_cols=145  Identities=43%  Similarity=0.716  Sum_probs=115.6

Q ss_pred             ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749           2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA   81 (148)
Q Consensus         2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa   81 (148)
                      ++. +|+|+.+|.||.++.++|.+++..+|++.++++.+.|||++|++++|+..+++|+++|..++++++|+..|+|+||
T Consensus        45 ~~~-~~~l~~~l~~P~i~~~~K~~~l~~~~~~~~~~~~~~nfl~ll~~~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA  123 (190)
T 2wss_S           45 ILK-EPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTA  123 (190)
T ss_dssp             HSS-STTSHHHHTCTTTTTSTTTTTTTHHHHTTTCCSSSSHHHHHHHHTTCGGGHHHHHHHHHHHHTTTSCCCCBCSSSC
T ss_pred             HHC-CHHHHHHHhCCCCCHHHHHHHHHHHHcccCCCHHHHHHHHHHHhCCcHhhHHHHHHHHHHHHHHHcCeeEEEEEEC
Confidence            567 9999999999999999999999999984468999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcCC
Q psy9749          82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQTP  147 (148)
Q Consensus        82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~~  147 (148)
                      .|||++|+++|.+.|+++++.|+++.++++|||+||||++|++||++||+|++++|++|++.|.++
T Consensus       124 ~~Ls~~q~~~l~~~L~~~~g~~~~v~l~~~vDpsLiGG~~v~vgd~viD~Sv~~~L~~l~~~L~~~  189 (190)
T 2wss_S          124 SALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMREI  189 (190)
T ss_dssp             BCCCCSSSTTTTTTTTSSTTTCC----------------------CCTTTTTTTTTTTTCTTTTTC
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCeEEEEEEEChhHhCeEEEEECCEEEehhHHHHHHHHHHHHhhc
Confidence            999999999999999999822369999999999999999999999999999999999999998775

>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B

Probab=99.88  E-value=8.5e-23  Score=143.79  Aligned_cols=96  Identities=18%  Similarity=0.326  Sum_probs=66.5

Q ss_pred             cccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeec
Q psy9749           3 LKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITAR   82 (148)
Q Consensus         3 ~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~   82 (148)
                      +.++|+|+.+|. |.++.++|.+++..+|+ +++++.+.|||++|++++|+..+++|+.+|..++++++|+..|+|+||.
T Consensus        37 ~~~~~~l~~~l~-P~i~~~~K~~~l~~~~~-~~~~~~~~nfl~ll~~~~Rl~~l~~I~~~f~~l~~~~~~~~~a~V~SA~  114 (134)
T 1abv_A           37 VTKNEQMAELLS-GALAPETLAESFIAVCG-EQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAA  114 (134)
T ss_dssp             HHTSHHHHHHHT-CSSCHHHHHHHHHHHHC-SCCCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHC---------
T ss_pred             HhcCHHHHHHHC-ccCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHCCeeEEEEEecC
Confidence            467899999999 99999999999999997 5899999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q psy9749          83 PLEEADKSELQSTLKLFA  100 (148)
Q Consensus        83 ~L~~~~~~~l~~~l~~~~  100 (148)
                      |||++|+++|.+.|++++
T Consensus       115 ~Ls~~q~~~l~~~L~~~~  132 (134)
T 1abv_A          115 ALSEQQLAKISAAMEKRL  132 (134)
T ss_dssp             ------------------
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999999987

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=97.33  E-value=0.00082  Score=48.65  Aligned_cols=70  Identities=13%  Similarity=0.213  Sum_probs=43.0

Q ss_pred             CCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE--CCEEeehhHHHHHHHHHHHhc
Q psy9749          72 GDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV--GDKYVDMSVASKIKKYTDLLQ  145 (148)
Q Consensus        72 ~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v--g~~~iD~Sv~~~L~~l~~~l~  145 (148)
                      +...+.|+ ..|-+.+..+.+...+.+.++ +  +.++..-++...||++|..  |+..+|+|+.++|+.+...+.
T Consensus       118 ~~~~v~i~-v~~~D~~~v~~~~~~~~~~~~-~--~~l~i~~~~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~  189 (198)
T 2dm9_A          118 NEKKVRVM-SNEKTLGLIASRIEEIKSELG-D--VSIELGETVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIR  189 (198)
T ss_dssp             TCSEEEEE-CCHHHHHHHHHTHHHHHHHCT-T--CEEEECCCCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHH
T ss_pred             CCCCEEEE-ECHhHHHHHHHHHHHHHHHhc-C--ceEEECCCCCccCceEEEeCCCCEEEECcHHHHHHHHHHHhH
Confidence            33344444 223233334444444445552 2  2333322557889999999  667999999999999988764

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=96.94  E-value=0.027  Score=40.74  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhc
Q psy9749          22 LKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAK  101 (148)
Q Consensus        22 ~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~  101 (148)
                      .|.+++..+|.      .+..-|.-+...   .....++..+........+.-.+.+  .   ++++...+...+...  
T Consensus        74 ar~eli~~v~~------~a~~~L~~~~~~---~~Y~~~L~~Li~ea~~~l~~~~~vv--~---~~~D~~~v~~~~~~~--  137 (187)
T 3v6i_A           74 ARGEVLEEVRR------RVREALEALPQK---PEWPEVVRKLALEALEALPGAKALV--A---NPEDLPHLEALARER--  137 (187)
T ss_dssp             HHHHHHHHHHH------HHHHHHHHGGGS---TTHHHHHHHHHHHHHHHCTTCCEEE--E---CTTTHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHH------HHHHHHHhhhCC---ccHHHHHHHHHHHHHHHcCCCCeEE--E---CHHHHHHHHHHHHhc--
Confidence            45566666664      222222222332   2245555555555444444444433  3   344555566666553  


Q ss_pred             CCCeEEEeeeeCCCccceeEEEE--CCEEeehhHHHHHHHHHHHhc
Q psy9749         102 KGENILLTTKVDPSIIGGMIVSV--GDKYVDMSVASKIKKYTDLLQ  145 (148)
Q Consensus       102 ~~~~i~l~~~vD~~ligGi~i~v--g~~~iD~Sv~~~L~~l~~~l~  145 (148)
                       |-    ++..+++..||+++..  |...+|.|+.++|+.+...+.
T Consensus       138 -~~----~~~~~~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~  178 (187)
T 3v6i_A          138 -GV----ELQAEPALRLGVRAVGAEGKTQVENSLLARLDRAWDALS  178 (187)
T ss_dssp             -TC----EEEECTTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHH
T ss_pred             -Ce----eeCCCCcccCceEEEeCCCCEEEECCHHHHHHHHHHHhH
Confidence             32    3356889999999998  336999999999999987763

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=96.33  E-value=0.028  Score=42.13  Aligned_cols=86  Identities=10%  Similarity=0.084  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHhcCCccEEEEeecCCCHHH----HHHHHHHHHHHhcCCCeEEEeeee------CCCccceeEEEEC
Q psy9749          56 IDGVINNFSIIMAAHRGDLPVEVITARPLEEAD----KSELQSTLKLFAKKGENILLTTKV------DPSIIGGMIVSVG  125 (148)
Q Consensus        56 l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~----~~~l~~~l~~~~~~~~~i~l~~~v------D~~ligGi~i~vg  125 (148)
                      ...++..+........+.-.+.|++.. =+.+.    ...+...+....  ++.......+      .++.+||++|..+
T Consensus       117 Y~~lL~~Li~eal~~l~e~~v~V~~~~-~D~~lv~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~GGvil~s~  193 (233)
T 4efa_E          117 YKPILQSLIVEALLKLLEPKAIVKALE-RDVDLIESMKDDIMREYGEKA--QRAPLEEIVISNDYLNKDLVSGGVVVSNA  193 (233)
T ss_dssp             HHHHHHHHHHHHHHHHCCSEEEEEECT-TTHHHHTTSHHHHHHHHHHHT--TTSCCCEEEECSSCCCTTTCSSEEEEECT
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEecH-hhHHHHHHHHHHHHHHHHHHh--CCCCccccccccccCCcccccCceEEEEC
Confidence            455555555544445555556666533 34333    334444455544  4333333333      3457899999874


Q ss_pred             C--EEeehhHHHHHHHHHHHh
Q psy9749         126 D--KYVDMSVASKIKKYTDLL  144 (148)
Q Consensus       126 ~--~~iD~Sv~~~L~~l~~~l  144 (148)
                      |  ..+|.|+.++|+.+...+
T Consensus       194 dGkI~vdNTle~RL~~~~~~~  214 (233)
T 4efa_E          194 SDKIEINNTLEERLKLLSEEA  214 (233)
T ss_dssp             TSCCEEEEEHHHHHHHHHHHH
T ss_pred             CCCEEEECCHHHHHHHHHHHH
Confidence            3  699999999999888765

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}

Probab=94.96  E-value=0.005  Score=40.96  Aligned_cols=55  Identities=18%  Similarity=0.256  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE--CCEEeehhHHHHHHHHHHHhc
Q psy9749          89 KSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV--GDKYVDMSVASKIKKYTDLLQ  145 (148)
Q Consensus        89 ~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v--g~~~iD~Sv~~~L~~l~~~l~  145 (148)
                      ...+.+.++++.  |+++.+..--..+.+||+++..  |...+|.|+.++|+.+..++.
T Consensus        42 l~~~~~e~~~~~--g~~~~v~~~~~~~~~GGvil~s~dg~I~vdNTle~rL~~l~~~~~   98 (106)
T 3lg8_A           42 LWNLEKEVENAT--KKVTVLKKGEPVDIAGGCIIETADGLKSLDNSLEAIFNRNLNVIR   98 (106)
T ss_dssp             CTTTTTTHHHHS--SSCCCCCCCCCCSSSCBCBCSSCSCBCCCCSHHHHSHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCeEEEEeCCCccccccEEEEeCCCCEEEECCHHHHHHHHHHHHH
Confidence            333444566665  6665554433357899999998  777899999999999998764

>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A

Probab=81.84  E-value=1.2  Score=32.63  Aligned_cols=93  Identities=12%  Similarity=0.095  Sum_probs=59.3

Q ss_pred             hHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCC
Q psy9749           7 VKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAE-NGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLE   85 (148)
Q Consensus         7 ~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~-~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~   85 (148)
                      ..|..++.|+.++.++|.+..+.+.. ..-...-...+.-|+. +|--..          ++....+.+.+.|. +..|+
T Consensus       101 E~L~eII~n~n~S~eeK~eA~~ql~e-Lt~~~ekE~~IE~LLKAKGF~DA----------VV~i~dd~V~VVVk-a~~Ls  168 (197)
T 3tuf_A          101 EELNAIVSSDDATAKEKSEAYDKMTA-LSEVEGTEKQLETLIKTQGYEDA----------LVNAEGDKINITVK-SDKHS  168 (197)
T ss_dssp             HHHHHHHTCTTSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCSCE----------EEECSSSEEEEEEE-CSCCC
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCce----------EEEecCCEEEEEEe-CCCCC
Confidence            46889999999999999999998875 1112233344444443 221111          11122333445555 68999


Q ss_pred             HHHHHHHHHHHHHHhcCCCeEEEeee
Q psy9749          86 EADKSELQSTLKLFAKKGENILLTTK  111 (148)
Q Consensus        86 ~~~~~~l~~~l~~~~~~~~~i~l~~~  111 (148)
                      +.+...|.+.+.+.++.+..|.+.|.
T Consensus       169 ~~eaaqI~DIV~r~tgv~~dV~Vqf~  194 (197)
T 3tuf_A          169 KSKATAIIDLVAKEIKTMKDVAVTFE  194 (197)
T ss_dssp             HHHHHHHHHTSCHHHHTTSEEEEEEE
T ss_pred             HHHHHHHHHHHHHhhCCCCceEEEee
Confidence            99999999999998853466665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d1abva_	105	a.70.1.1 (A:) N-terminal domain of the delta subun	1e-04

>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]} Length = 105

class: All alpha proteins
fold: ATPD N-terminal domain-like
superfamily: N-terminal domain of the delta subunit of the F1F0-ATP synthase
family: N-terminal domain of the delta subunit of the F1F0-ATP synthase
domain: N-terminal domain of the delta subunit of the F1F0-ATP synthase
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 2   ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVIN 61
            +  + +  + +      ++L    + +    +       NL+ ++AENG++  +  V+ 
Sbjct: 36  EVTKNEQMAELLSGALAPETLAESFIAVC--GEQLDENGQNLIRVMAENGRLNALPDVLE 93

Query: 62  NFSIIMAAHRG 72
            F  + A    
Sbjct: 94  QFIHLRAVSEA 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1abva_	105	N-terminal domain of the delta subunit of the F1F0	99.33
d2dm9a1	118	V-type ATP synthase subunit E {Pyrococcus horikosh	97.41
d2hc5a1	109	Hypothetical protein YvyC {Bacillus subtilis [TaxI	84.23

>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: ATPD N-terminal domain-like
superfamily: N-terminal domain of the delta subunit of the F1F0-ATP synthase
family: N-terminal domain of the delta subunit of the F1F0-ATP synthase
domain: N-terminal domain of the delta subunit of the F1F0-ATP synthase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.4e-12  Score=86.32  Aligned_cols=67  Identities=18%  Similarity=0.364  Sum_probs=57.7

Q ss_pred             cchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCC
Q psy9749           5 TDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGD   73 (148)
Q Consensus         5 ~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~   73 (148)
                      ++|++..++.+|.++.++| ..+..++. +++++.+.|||++|++++|+.++++|+..|..+++++.|.
T Consensus        39 ~~~~~~~~l~~p~~~~~kk-~~l~~~~~-~~~~~~~~nfl~lL~~~~Rl~~l~~I~~~f~~L~~~~e~T  105 (105)
T d1abva_          39 KNEQMAELLSGALAPETLA-ESFIAVCG-EQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEAT  105 (105)
T ss_dssp             TSHHHHHHHTCSSCHHHHH-HHHHHHHC-SCCCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHhcccCcHHHH-HHHHHHHh-cccCHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHcCC
Confidence            5899999999887765555 55556665 5899999999999999999999999999999999998763

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.41  E-value=0.00042  Score=45.20  Aligned_cols=86  Identities=10%  Similarity=0.145  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE--CCEEeehhH
Q psy9749          56 IDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV--GDKYVDMSV  133 (148)
Q Consensus        56 l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v--g~~~iD~Sv  133 (148)
                      ..+++..+........+...+.|..... +.+-.+.+...+.+.+   +.+.++..-+++.+||+++..  |...+|+|+
T Consensus        22 Y~~~L~~Li~~a~~~l~~~ev~v~~~~~-D~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~GGvil~s~dG~I~vdnTl   97 (118)
T d2dm9a1          22 YFESVKALLKEAIKELNEKKVRVMSNEK-TLGLIASRIEEIKSEL---GDVSIELGETVDTMGGVIVETEDGRIRIDNTF   97 (118)
T ss_dssp             HHHHHHHHHHHHHHHHTCSEEEEECCHH-HHHHHHHTHHHHHHHC---TTCEEEECCCCCCSSEEEEEETTSSCEEEEEH
T ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEEchh-hHHHHHHHHHHHHHHc---CCceeEeCCCCccCCCEEEEecCCCEEEECcH
Confidence            4555555554444444554555554333 3333333333334332   344566677889999999999  778999999


Q ss_pred             HHHHHHHHHHhc
Q psy9749         134 ASKIKKYTDLLQ  145 (148)
Q Consensus       134 ~~~L~~l~~~l~  145 (148)
                      .++|+.....+.
T Consensus        98 e~rl~~~~e~~~  109 (118)
T d2dm9a1          98 EARMERFEGEIR  109 (118)
T ss_dssp             HHHHHHTHHHHH
T ss_pred             HHHHHHHHHHhH
Confidence            999999887763

>d2hc5a1 d.352.1.1 (A:1-109) Hypothetical protein YvyC {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: FlaG-like
superfamily: FlaG-like
family: FlaG-like
domain: Hypothetical protein YvyC
species: Bacillus subtilis [TaxId: 1423]

Probab=84.23  E-value=1.3  Score=27.75  Aligned_cols=70  Identities=7%  Similarity=0.218  Sum_probs=51.0

Q ss_pred             CCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE
Q psy9749          51 GKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV  124 (148)
Q Consensus        51 ~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v  124 (148)
                      +|++.+..+...+..........  +.=..+.+++.++.+...+.|.+.+. .....+.|.+|++. |.++|+|
T Consensus         4 ~~l~~~~pv~d~~~t~~~~~~~~--~~~~~~~e~s~~~l~~~v~~ln~~l~-~~~~~L~F~~de~~-~~~vVkV   73 (109)
T d2hc5a1           4 ERLTTLQPVWDRYDTQIHNQKDN--DNEVPVHQVSYTNLAEMVGEMNKLLE-PSQVHLKFELHDKL-NEYYVKV   73 (109)
T ss_dssp             TTCCCCHHHHHHHHHHHHSCCCC--CSSCCCCCCCHHHHHHHHHHHHHHHT-TSSCCEEEEEEEET-TEEEEEE
T ss_pred             ccccccCcchhhhhhhccccccc--hhhccccccCHHHHHHHHHHHHHHHH-hcCCceEEEEecCC-CCEEEEE
Confidence            35556666777777665544433  22255677899999999999998874 56778999999874 8899987