Psyllid ID: psy9760

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MIFLFPATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHVSVTTY
Secondary Structure (PSIPRED)
cccccccccEEEEEccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
miflfpateirceekskggikydvilaepagtppplktaadtpvilRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKmeklkdhvsvtty
Flexible Loop (DISEMBL)
miflfpateirceekskggiKYDVILAepagtppplktaadtpvILRSESIEEKLKQAEERRLSLeaekiaknaarrskiedaakkrdekenefieqtketlekrleissekrealindkmeklkdhvsvtty
Low Complexity Region (SEG)
MIFLFPATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHVSVTTY
Disordered region (IsUnstruct)
**FLFPATEIRCEEKSKGGIKYDVILA**********************************************************************************************************
Disordered Region (DISOPRED)
**FLFPATEIRC*****GGIKYDVIL*********************************************************************************************KMEKLKDHV*****
Disordered Region (DISEMBL)
MIFLFPATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIE************FIEQTKETLEKRLEISSEKREALINDKMEKLK********
Disordered Region (DISPRO)
MIFLFPATEIRCEEKSKGGIKYDVILAEPAGT****************ESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHVSVTTY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIFLFPATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADTPVILRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKMEKLKDHVSVTTY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q4R4N5	180	Stathmin-3 OS=Macaca fasc	N/A	N/A	0.939	0.694	0.291	1e-05
Q5R8C6	180	Stathmin-3 OS=Pongo abeli	yes	N/A	0.939	0.694	0.283	2e-05
Q9NZ72	180	Stathmin-3 OS=Homo sapien	yes	N/A	0.939	0.694	0.283	2e-05
O93388	180	Stathmin-3 OS=Gallus gall	yes	N/A	0.939	0.694	0.283	0.0001
P63043	189	Stathmin-4 OS=Rattus norv	yes	N/A	0.819	0.576	0.327	0.0002
P63042	189	Stathmin-4 OS=Mus musculu	yes	N/A	0.819	0.576	0.327	0.0002
Q5R4C5	189	Stathmin-4 OS=Pongo abeli	no	N/A	0.819	0.576	0.327	0.0002
Q9H169	189	Stathmin-4 OS=Homo sapien	no	N/A	0.819	0.576	0.327	0.0002
A4IFK9	180	Stathmin-3 OS=Bos taurus	no	N/A	0.909	0.672	0.282	0.0002
O70166	180	Stathmin-3 OS=Mus musculu	no	N/A	0.894	0.661	0.278	0.0002

>sp|Q4R4N5|STMN3_MACFA Stathmin-3 OS=Macaca fascicularis GN=STMN3 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 2/127 (1%)

Query: 2   IFLFPATEIRCEEKSKGGIKYDVILAEPAGTPP--PLKTAADTPVILRSESIEEKLKQAE 59
           I+ +   E++  +K   G  ++VIL  P+   P  P+ ++         E ++++L+ AE
Sbjct: 34  IYQYGDMEVKQLDKRASGQSFEVILKSPSDLSPESPMLSSPPKKKDTSLEELQKRLEAAE 93

Query: 60  ERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALIND 119
           ERR + EA+ + + A RR    +   K  E+ N F  Q +E L  ++E+S E REA +  
Sbjct: 94  ERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIREAHLAA 153

Query: 120 KMEKLKD 126
             E+L++
Sbjct: 154 LRERLRE 160

Exhibits microtubule-destabilizing activity, which is antagonized by STAT3.
Macaca fascicularis (taxid: 9541)

>sp|Q5R8C6|STMN3_PONAB Stathmin-3 OS=Pongo abelii GN=STMN3 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 2/127 (1%)

Query: 2   IFLFPATEIRCEEKSKGGIKYDVILAEPAGTPP--PLKTAADTPVILRSESIEEKLKQAE 59
           ++ +   E++  +K   G  ++VIL  P+   P  P+ ++         E ++++L+ AE
Sbjct: 34  VYQYGDMEVKQLDKRASGQSFEVILKSPSDLSPESPMLSSPPKKKDTSLEELQKRLEAAE 93

Query: 60  ERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALIND 119
           ERR + EA+ + + A RR    +   K  E+ N F  Q +E L  ++E+S E REA +  
Sbjct: 94  ERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIREAHLAA 153

Query: 120 KMEKLKD 126
             E+L++
Sbjct: 154 LRERLRE 160

Exhibits microtubule-destabilizing activity, which is antagonized by STAT3.

Pongo abelii (taxid: 9601)

>sp|Q9NZ72|STMN3_HUMAN Stathmin-3 OS=Homo sapiens GN=STMN3 PE=1 SV=3

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 2/127 (1%)

Query: 2   IFLFPATEIRCEEKSKGGIKYDVILAEPAGTPP--PLKTAADTPVILRSESIEEKLKQAE 59
           ++ +   E++  +K   G  ++VIL  P+   P  P+ ++         E ++++L+ AE
Sbjct: 34  VYQYGDMEVKQLDKRASGQSFEVILKSPSDLSPESPMLSSPPKKKDTSLEELQKRLEAAE 93

Query: 60  ERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALIND 119
           ERR + EA+ + + A RR    +   K  E+ N F  Q +E L  ++E+S E REA +  
Sbjct: 94  ERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIREAHLAA 153

Query: 120 KMEKLKD 126
             E+L++
Sbjct: 154 LRERLRE 160

Exhibits microtubule-destabilizing activity, which is antagonized by STAT3.

Homo sapiens (taxid: 9606)

>sp|O93388|STMN3_CHICK Stathmin-3 OS=Gallus gallus GN=STMN3 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 2/127 (1%)

Query: 2   IFLFPATEIRCEEKSKGGIKYDVILAEPAGTPP--PLKTAADTPVILRSESIEEKLKQAE 59
           I+ +   E++  +K   G  ++VIL  P+   P  P+ ++      L  E ++ +L+ AE
Sbjct: 34  IYQYGDMEVKQLDKRASGQSFEVILKSPSDLSPESPILSSPPKKKDLSLEELQRRLEAAE 93

Query: 60  ERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALIND 119
           ERR + EA+ + + A +R    +   K  E+ N F    +E L  ++E+S E REA +  
Sbjct: 94  ERRKTQEAQVLKQLAEKREHEREVLHKALEENNNFSRLAEEKLNYKMELSREIREAHLAA 153

Query: 120 KMEKLKD 126
             E+L++
Sbjct: 154 LRERLRE 160

Gallus gallus (taxid: 9031)

>sp|P63043|STMN4_RAT Stathmin-4 OS=Rattus norvegicus GN=Stmn4 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 15  KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
           K   G  ++VIL  P+    P   A+      P +   E I++KL+ AEERR   EAE +
Sbjct: 57  KCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 113

Query: 71  AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R    +  +K  E+ N FI+  KE L +++E + E REA +   +E+L++
Sbjct: 114 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 169

Exhibits microtubule-destabilizing activity.

Rattus norvegicus (taxid: 10116)

>sp|P63042|STMN4_MOUSE Stathmin-4 OS=Mus musculus GN=Stmn4 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 15  KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
           K   G  ++VIL  P+    P   A+      P +   E I++KL+ AEERR   EAE +
Sbjct: 57  KCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 113

Query: 71  AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R    +  +K  E+ N FI+  KE L +++E + E REA +   +E+L++
Sbjct: 114 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 169

Exhibits microtubule-destabilizing activity.

Mus musculus (taxid: 10090)

>sp|Q5R4C5|STMN4_PONAB Stathmin-4 OS=Pongo abelii GN=STMN4 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 15  KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
           K   G  ++VIL  P+    P   A+      P +   E I++KL+ AEERR   EAE +
Sbjct: 57  KCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 113

Query: 71  AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R    +  +K  E+ N FI+  KE L +++E + E REA +   +E+L++
Sbjct: 114 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 169

Exhibits microtubule-destabilizing activity.

Pongo abelii (taxid: 9601)

>sp|Q9H169|STMN4_HUMAN Stathmin-4 OS=Homo sapiens GN=STMN4 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 15  KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
           K   G  ++VIL  P+    P   A+      P +   E I++KL+ AEERR   EAE +
Sbjct: 57  KCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 113

Query: 71  AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R    +  +K  E+ N FI+  KE L +++E + E REA +   +E+L++
Sbjct: 114 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 169

Exhibits microtubule-destabilizing activity.

Homo sapiens (taxid: 9606)

>sp|A4IFK9|STMN3_BOVIN Stathmin-3 OS=Bos taurus GN=STMN3 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 69/131 (52%), Gaps = 10/131 (7%)

Query: 2   IFLFPATEIRCEEKSKGGIKYDVILAEPAGTPP--PLKTAA----DTPVILRSESIEEKL 55
           ++ +   E++  +K   G  ++VIL  P+   P  P+ ++     DT +    E ++++L
Sbjct: 34  VYQYGDMEVKQLDKRASGQSFEVILKSPSDLSPESPMLSSPPKRKDTSL----EELQKRL 89

Query: 56  KQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREA 115
           + AEERR + EA+ + + A RR    +   K  E+ N F    +E L  ++E+S E REA
Sbjct: 90  EAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSRLAEEKLNYKMELSKEIREA 149

Query: 116 LINDKMEKLKD 126
            +    E+L++
Sbjct: 150 HLAALRERLRE 160

Exhibits microtubule-destabilizing activity, which is antagonized by STAT3.

Bos taurus (taxid: 9913)

>sp|O70166|STMN3_MOUSE Stathmin-3 OS=Mus musculus GN=Stmn3 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 14/133 (10%)

Query: 2   IFLFPATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADTPVILRS--------ESIEE 53
           I+ +   E++  +K   G  ++VIL  P+   P      ++PV+           E +++
Sbjct: 34  IYQYGDMEVKQLDKRASGQSFEVILKSPSDLSP------ESPVLSSPPKRKDASLEELQK 87

Query: 54  KLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKR 113
           +L+ AEERR + EA+ + + A RR    +   K  E+ N F    +E L  ++E+S E R
Sbjct: 88  RLEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSRLAEEKLNYKMELSKEIR 147

Query: 114 EALINDKMEKLKD 126
           EA +    E+L++
Sbjct: 148 EAHLAALRERLRE 160

Exhibits microtubule-destabilizing activity, which is antagonized by STAT3.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
345492957	401	PREDICTED: hypothetical protein LOC10011	0.887	0.294	0.515	7e-25
24582149	250	stathmin, isoform A [Drosophila melanoga	0.894	0.476	0.535	8e-25
195342944	285	GM18605 [Drosophila sechellia] gi|194132	0.894	0.417	0.535	9e-25
11493744	254	STATHMIN-19, partial [Drosophila melanog	0.894	0.468	0.535	9e-25
24582147	302	stathmin, isoform B [Drosophila melanoga	0.894	0.394	0.535	9e-25
11493742	174	STATHMIN-13, partial [Drosophila melanog	0.879	0.672	0.544	1e-24
194862345	302	GG10389 [Drosophila erecta] gi|190661848	0.894	0.394	0.535	1e-24
11493732	234	stathmin-1 [Drosophila melanogaster]	0.879	0.5	0.544	1e-24
281427802	350	MIP16026p [Drosophila melanogaster]	0.879	0.334	0.544	1e-24
195471864	302	stai [Drosophila yakuba] gi|194174323|gb	0.894	0.394	0.535	1e-24

>gi|345492957|ref|XP_001601239.2| PREDICTED: hypothetical protein LOC100116850 [Nasonia vitripennis]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 87/126 (69%), Gaps = 8/126 (6%)

Query: 7   ATEIRCEEKSKGGIKYDVILAEPAG----TPPPLKTAADTPVILRSESIEEKLKQAEERR 62
           ATEIRC+EK+KGG++Y+VILAEP       P P +T+   P +    +IE+KL+ AEERR
Sbjct: 98  ATEIRCQEKTKGGLRYEVILAEPTAPAKRAPSPTQTSPTQPAV----NIEDKLRAAEERR 153

Query: 63  LSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKME 122
           LSLEA KIA   AR SKIE+ A+K+DE    F+  T+E+L+ ++  S EKREA I D   
Sbjct: 154 LSLEASKIAALNARLSKIEEVARKKDELNASFVNATRESLDIKMNNSEEKREAFITDLRS 213

Query: 123 KLKDHV 128
           KLK+H+
Sbjct: 214 KLKEHL 219

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24582149|ref|NP_723158.1| stathmin, isoform A [Drosophila melanogaster] gi|16768800|gb|AAL28619.1| LD04103p [Drosophila melanogaster] gi|22945741|gb|AAF52345.2| stathmin, isoform A [Drosophila melanogaster] gi|220942880|gb|ACL83983.1| stai-PA [synthetic construct]

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/127 (53%), Positives = 90/127 (70%), Gaps = 8/127 (6%)

Query: 5   FPATEIRCEEKSKGGIKYDVILAEPA---GTPP-PLKTAADTPVILRSESIEEKLKQAEE 60
           F  TEIRC+EKS+GG+ Y+VILAEPA     P  P+    +  V    E IE+KLK AEE
Sbjct: 53  FITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSV----EEIEQKLKAAEE 108

Query: 61  RRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDK 120
           RR+SLEA+K+A  + + +K+E+A +K+DE  NEFI QTKE LE ++E+  EKREA+I+D 
Sbjct: 109 RRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQTKEQLESKMELHVEKREAIISDM 168

Query: 121 MEKLKDH 127
            EKLK H
Sbjct: 169 KEKLKIH 175

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195342944|ref|XP_002038058.1| GM18605 [Drosophila sechellia] gi|194132908|gb|EDW54476.1| GM18605 [Drosophila sechellia]

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/127 (53%), Positives = 90/127 (70%), Gaps = 8/127 (6%)

Query: 5   FPATEIRCEEKSKGGIKYDVILAEPA---GTPP-PLKTAADTPVILRSESIEEKLKQAEE 60
           F  TEIRC+EKS+GG+ Y+VILAEPA     P  P+    +  V    E IE+KLK AEE
Sbjct: 36  FITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSV----EEIEQKLKAAEE 91

Query: 61  RRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDK 120
           RR+SLEA+K+A  + + +K+E+A +K+DE  NEFI QTKE LE ++E+  EKREA+I+D 
Sbjct: 92  RRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQTKEQLESKMELHVEKREAIISDM 151

Query: 121 MEKLKDH 127
            EKLK H
Sbjct: 152 KEKLKIH 158

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|11493744|gb|AAG35633.1|AF202990_1 STATHMIN-19, partial [Drosophila melanogaster]

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/127 (53%), Positives = 90/127 (70%), Gaps = 8/127 (6%)

Query: 5   FPATEIRCEEKSKGGIKYDVILAEPA---GTPP-PLKTAADTPVILRSESIEEKLKQAEE 60
           F  TEIRC+EKS+GG+ Y+VILAEPA     P  P+    +  V    E IE+KLK AEE
Sbjct: 5   FITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSV----EEIEQKLKAAEE 60

Query: 61  RRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDK 120
           RR+SLEA+K+A  + + +K+E+A +K+DE  NEFI QTKE LE ++E+  EKREA+I+D 
Sbjct: 61  RRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQTKEQLESKMELHVEKREAIISDM 120

Query: 121 MEKLKDH 127
            EKLK H
Sbjct: 121 KEKLKIH 127

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24582147|ref|NP_723157.1| stathmin, isoform B [Drosophila melanogaster] gi|442626291|ref|NP_001260122.1| stathmin, isoform E [Drosophila melanogaster] gi|22945740|gb|AAN10581.1| stathmin, isoform B [Drosophila melanogaster] gi|440213418|gb|AGB92658.1| stathmin, isoform E [Drosophila melanogaster]

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/127 (53%), Positives = 90/127 (70%), Gaps = 8/127 (6%)

Query: 5   FPATEIRCEEKSKGGIKYDVILAEPA---GTPP-PLKTAADTPVILRSESIEEKLKQAEE 60
           F  TEIRC+EKS+GG+ Y+VILAEPA     P  P+    +  V    E IE+KLK AEE
Sbjct: 53  FITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSV----EEIEQKLKAAEE 108

Query: 61  RRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDK 120
           RR+SLEA+K+A  + + +K+E+A +K+DE  NEFI QTKE LE ++E+  EKREA+I+D 
Sbjct: 109 RRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQTKEQLESKMELHVEKREAIISDM 168

Query: 121 MEKLKDH 127
            EKLK H
Sbjct: 169 KEKLKIH 175

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|11493742|gb|AAG35632.1|AF202989_1 STATHMIN-13, partial [Drosophila melanogaster]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 90/125 (72%), Gaps = 8/125 (6%)

Query: 7   ATEIRCEEKSKGGIKYDVILAEPA---GTPP-PLKTAADTPVILRSESIEEKLKQAEERR 62
           ATEIRC+EKS+GG+ Y+VILAEPA     P  P+    +  V    E IE+KLK AEERR
Sbjct: 10  ATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSV----EEIEQKLKAAEERR 65

Query: 63  LSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKME 122
           +SLEA+K+A  + + +K+E+A +K+DE  NEFI QTKE LE ++E+  EKREA+I+D  E
Sbjct: 66  ISLEAKKMADISTKLAKVEEATRKKDEITNEFITQTKEQLESKMELHVEKREAIISDMKE 125

Query: 123 KLKDH 127
           KLK H
Sbjct: 126 KLKIH 130

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194862345|ref|XP_001969981.1| GG10389 [Drosophila erecta] gi|190661848|gb|EDV59040.1| GG10389 [Drosophila erecta]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/127 (53%), Positives = 90/127 (70%), Gaps = 8/127 (6%)

Query: 5   FPATEIRCEEKSKGGIKYDVILAEPA---GTPP-PLKTAADTPVILRSESIEEKLKQAEE 60
           F  TEIRC+EKS+GG+ Y+VILAEPA     P  P+    +  V    E IE+KLK AEE
Sbjct: 53  FITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSV----EEIEQKLKAAEE 108

Query: 61  RRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDK 120
           RR+SLEA+K+A  + + +K+E+A +K+DE  NEFI QTKE LE ++E+  EKREA+I+D 
Sbjct: 109 RRISLEAKKMADISNKLAKVEEATRKKDEITNEFITQTKEQLESKMELHVEKREAIISDM 168

Query: 121 MEKLKDH 127
            EKLK H
Sbjct: 169 KEKLKIH 175

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|11493732|gb|AAG35627.1|AF202773_1 stathmin-1 [Drosophila melanogaster]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 90/125 (72%), Gaps = 8/125 (6%)

Query: 7   ATEIRCEEKSKGGIKYDVILAEPA---GTPP-PLKTAADTPVILRSESIEEKLKQAEERR 62
           ATEIRC+EKS+GG+ Y+VILAEPA     P  P+    +  V    E IE+KLK AEERR
Sbjct: 10  ATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSV----EEIEQKLKAAEERR 65

Query: 63  LSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKME 122
           +SLEA+K+A  + + +K+E+A +K+DE  NEFI QTKE LE ++E+  EKREA+I+D  E
Sbjct: 66  ISLEAKKMADISTKLAKVEEATRKKDEITNEFITQTKEQLESKMELHVEKREAIISDMKE 125

Query: 123 KLKDH 127
           KLK H
Sbjct: 126 KLKIH 130

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281427802|gb|ADA69460.1| MIP16026p [Drosophila melanogaster]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 90/125 (72%), Gaps = 8/125 (6%)

Query: 7   ATEIRCEEKSKGGIKYDVILAEPA---GTPP-PLKTAADTPVILRSESIEEKLKQAEERR 62
           ATEIRC+EKS+GG+ Y+VILAEPA     P  P+    +  V    E IE+KLK AEERR
Sbjct: 134 ATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSV----EEIEQKLKAAEERR 189

Query: 63  LSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKME 122
           +SLEA+K+A  + + +K+E+A +K+DE  NEFI QTKE LE ++E+  EKREA+I+D  E
Sbjct: 190 ISLEAKKMADISTKLAKVEEATRKKDEITNEFITQTKEQLESKMELHVEKREAIISDMKE 249

Query: 123 KLKDH 127
           KLK H
Sbjct: 250 KLKIH 254

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195471864|ref|XP_002088222.1| stai [Drosophila yakuba] gi|194174323|gb|EDW87934.1| stai [Drosophila yakuba]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/127 (53%), Positives = 90/127 (70%), Gaps = 8/127 (6%)

Query: 5   FPATEIRCEEKSKGGIKYDVILAEPA---GTPP-PLKTAADTPVILRSESIEEKLKQAEE 60
           F  TEIRC+EKS+GG+ Y+VILAEPA     P  P+    +  V    E IE+KLK AEE
Sbjct: 53  FITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSV----EEIEQKLKAAEE 108

Query: 61  RRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDK 120
           RR+SLEA+K+A  + + +K+E+A +K+DE  NEFI QTKE LE ++E+  EKREA+I+D 
Sbjct: 109 RRISLEAKKMADISNKLAKVEEATRKKDEITNEFITQTKEQLESKMELHVEKREAIISDM 168

Query: 121 MEKLKDH 127
            EKLK H
Sbjct: 169 KEKLKIH 175

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
FB|FBgn0051641	302	stai "stathmin" [Drosophila me	0.924	0.407	0.536	1.9e-28
ZFIN|ZDB-GENE-040426-2732	188	stmn4 "stathmin-like 4" [Danio	0.842	0.595	0.362	2.4e-12
UNIPROTKB|B7Z5G4	169	STMN3 "Stathmin" [Homo sapiens	0.939	0.739	0.283	2e-10
UNIPROTKB|Q9NZ72	180	STMN3 "Stathmin-3" [Homo sapie	0.939	0.694	0.283	2e-10
ZFIN|ZDB-GENE-040718-301	188	stmn4l "stathmin-like 4, like"	0.812	0.574	0.367	2.5e-10
UNIPROTKB|Q3T0C7	149	STMN1 "Stathmin" [Bos taurus (	0.849	0.758	0.315	6.6e-10
UNIPROTKB|J9NVP2	149	STMN1 "Stathmin" [Canis lupus	0.849	0.758	0.315	6.6e-10
UNIPROTKB|P16949	149	STMN1 "Stathmin" [Homo sapiens	0.849	0.758	0.315	6.6e-10
UNIPROTKB|Q6DUB7	149	STMN1 "Stathmin" [Sus scrofa (	0.849	0.758	0.315	6.6e-10
MGI|MGI:96739	149	Stmn1 "stathmin 1" [Mus muscul	0.849	0.758	0.315	6.6e-10

FB|FBgn0051641 stai "stathmin" [Drosophila melanogaster (taxid:7227)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 66/123 (53%), Positives = 87/123 (70%)

Query:     5 FPATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADTPVILRSESIEEKLKQAEERRLS 64
             F  TEIRC+EKS+GG+ Y+VILAEPA      K        +  E IE+KLK AEERR+S
Sbjct:    53 FITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIEQKLKAAEERRIS 112

Query:    65 LEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKL 124
             LEA+K+A  + + +K+E+A +K+DE  NEFI QTKE LE ++E+  EKREA+I+D  EKL
Sbjct:   113 LEAKKMADISTKLAKVEEATRKKDEITNEFITQTKEQLESKMELHVEKREAIISDMKEKL 172

Query:   125 KDH 127
             K H
Sbjct:   173 KIH 175

GO:0005875 "microtubule associated complex" evidence=ISS;IDA

GO:0008017 "microtubule binding" evidence=ISS

GO:0007017 "microtubule-based process" evidence=ISS

GO:0007399 "nervous system development" evidence=IMP

GO:0008354 "germ cell migration" evidence=IMP

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0015631 "tubulin binding" evidence=IDA

ZFIN|ZDB-GENE-040426-2732 stmn4 "stathmin-like 4" [Danio rerio (taxid:7955)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 41/113 (36%), Positives = 62/113 (54%)

Query:    15 KSKGGIKYDVILAEPA-GTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKN 73
             K   G  ++VIL  P+    P L T+         E I++KL+ AEERR   EAE +   
Sbjct:    56 KRTSGQAFEVILKPPSFDVAPELNTSIPQRKDPSLEEIQKKLEAAEERRKFQEAEMLKHL 115

Query:    74 AARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
             A +R    +  +K  E+ N FI+  KE LE+R+E + E REAL+   +E+L++
Sbjct:   116 AEKREHEREVIQKAFEENNNFIKNAKEKLEQRMEANKENREALLAAMLERLQE 168

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

UNIPROTKB|B7Z5G4 STMN3 "Stathmin" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 36/127 (28%), Positives = 67/127 (52%)

Query:     2 IFLFPATEIRCEEKSKGGIKYDVILAEPAGTPP--PLKTAADTPVILRSESIEEKLKQAE 59
             ++ +   E++  +K   G  ++VIL  P+   P  P+ ++         E ++++L+ AE
Sbjct:    23 VYQYGDMEVKQLDKRASGQSFEVILKSPSDLSPESPMLSSPPKKKDTSLEELQKRLEAAE 82

Query:    60 ERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALIND 119
             ERR + EA+ + + A RR    +   K  E+ N F  Q +E L  ++E+S E REA +  
Sbjct:    83 ERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIREAHLAA 142

Query:   120 KMEKLKD 126
               E+L++
Sbjct:   143 LRERLRE 149

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0035021 "negative regulation of Rac protein signal transduction" evidence=IEA

UNIPROTKB|Q9NZ72 STMN3 "Stathmin-3" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 36/127 (28%), Positives = 67/127 (52%)

Query:     2 IFLFPATEIRCEEKSKGGIKYDVILAEPAGTPP--PLKTAADTPVILRSESIEEKLKQAE 59
             ++ +   E++  +K   G  ++VIL  P+   P  P+ ++         E ++++L+ AE
Sbjct:    34 VYQYGDMEVKQLDKRASGQSFEVILKSPSDLSPESPMLSSPPKKKDTSLEELQKRLEAAE 93

Query:    60 ERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALIND 119
             ERR + EA+ + + A RR    +   K  E+ N F  Q +E L  ++E+S E REA +  
Sbjct:    94 ERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIREAHLAA 153

Query:   120 KMEKLKD 126
               E+L++
Sbjct:   154 LRERLRE 160

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0007399 "nervous system development" evidence=TAS

GO:0019904 "protein domain specific binding" evidence=ISS

GO:0031122 "cytoplasmic microtubule organization" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0032314 "regulation of Rac GTPase activity" evidence=ISS

GO:0051493 "regulation of cytoskeleton organization" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0035021 "negative regulation of Rac protein signal transduction" evidence=ISS

ZFIN|ZDB-GENE-040718-301 stmn4l "stathmin-like 4, like" [Danio rerio (taxid:7955)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 43/117 (36%), Positives = 62/117 (52%)

Query:    15 KSKGGIKYDVILAEPA--GTP---PPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEK 69
             K   G  ++VIL  P+  G     P      D P +   E I++KL  AEERR   EAE 
Sbjct:    56 KRSSGQAFEVILRPPSFDGQREFHPTFPPRRD-PSL---EEIQKKLDAAEERRKCQEAEL 111

Query:    70 IAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
             +   A +R    + A+K  E+ N F++  KE LE R+EI+ E REA I   +E+L++
Sbjct:   112 LKHLAEKREHEREVAQKALEEHNNFMKMAKEKLEHRMEINKENREAHIAAMLERLQE 168

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

UNIPROTKB|Q3T0C7 STMN1 "Stathmin" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/114 (31%), Positives = 63/114 (55%)

Query:    14 EKSKGGIKYDVILAEPAG-TPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAK 72
             EK   G  +++IL+  +  + P    +      L  E I++KL+ AEERR S EAE + +
Sbjct:    12 EKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQ 71

Query:    73 NAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R   ++  +K  E+ N F +  +E L  ++E + E REA +  K+E+L++
Sbjct:    72 LAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERLRE 125

GO:0015631 "tubulin binding" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IEA

GO:0007019 "microtubule depolymerization" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

UNIPROTKB|J9NVP2 STMN1 "Stathmin" [Canis lupus familiaris (taxid:9615)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/114 (31%), Positives = 63/114 (55%)

Query:    14 EKSKGGIKYDVILAEPAG-TPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAK 72
             EK   G  +++IL+  +  + P    +      L  E I++KL+ AEERR S EAE + +
Sbjct:    12 EKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQ 71

Query:    73 NAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R   ++  +K  E+ N F +  +E L  ++E + E REA +  K+E+L++
Sbjct:    72 LAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERLRE 125

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

UNIPROTKB|P16949 STMN1 "Stathmin" [Homo sapiens (taxid:9606)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/114 (31%), Positives = 63/114 (55%)

Query:    14 EKSKGGIKYDVILAEPAG-TPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAK 72
             EK   G  +++IL+  +  + P    +      L  E I++KL+ AEERR S EAE + +
Sbjct:    12 EKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQ 71

Query:    73 NAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R   ++  +K  E+ N F +  +E L  ++E + E REA +  K+E+L++
Sbjct:    72 LAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERLRE 125

GO:0005874 "microtubule" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0007409 "axonogenesis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IEA

GO:0051272 "positive regulation of cellular component movement" evidence=IEA

GO:0009615 "response to virus" evidence=IEP

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007165 "signal transduction" evidence=NAS

GO:0035556 "intracellular signal transduction" evidence=TAS

GO:0007019 "microtubule depolymerization" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IDA

GO:0015631 "tubulin binding" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

UNIPROTKB|Q6DUB7 STMN1 "Stathmin" [Sus scrofa (taxid:9823)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/114 (31%), Positives = 63/114 (55%)

Query:    14 EKSKGGIKYDVILAEPAG-TPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAK 72
             EK   G  +++IL+  +  + P    +      L  E I++KL+ AEERR S EAE + +
Sbjct:    12 EKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQ 71

Query:    73 NAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R   ++  +K  E+ N F +  +E L  ++E + E REA +  K+E+L++
Sbjct:    72 LAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERLRE 125

GO:0051272 "positive regulation of cellular component movement" evidence=IEA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015631 "tubulin binding" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0007409 "axonogenesis" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IEA

GO:0007019 "microtubule depolymerization" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

MGI|MGI:96739 Stmn1 "stathmin 1" [Mus musculus (taxid:10090)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/114 (31%), Positives = 63/114 (55%)

Query:    14 EKSKGGIKYDVILAEPAG-TPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAK 72
             EK   G  +++IL+  +  + P    +      L  E I++KL+ AEERR S EAE + +
Sbjct:    12 EKRASGQAFELILSPRSKESVPDFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQ 71

Query:    73 NAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R   ++  +K  E+ N F +  +E L  ++E + E REA +  K+E+L++
Sbjct:    72 LAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERLRE 125

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007019 "microtubule depolymerization" evidence=ISO

GO:0007052 "mitotic spindle organization" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP

GO:0015631 "tubulin binding" evidence=ISO

GO:0016020 "membrane" evidence=IDA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IDA

GO:0051272 "positive regulation of cellular component movement" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	133
pfam00836	140	pfam00836, Stathmin, Stathmin family	9e-05

>gnl|CDD|109874 pfam00836, Stathmin, Stathmin family

 Score = 39.2 bits (91), Expect = 9e-05
 Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 9   EIRCEEKSKGGIKYDVILAEPA-GTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEA 67
           E++   K   G  +++IL  P+  + P    ++     L  E I++KL+ AEERR S EA
Sbjct: 4   EVKQLNKRASGQAFELILKPPSFDSVPEFNLSSPKKKDLSLEEIQKKLEAAEERRKSQEA 63

Query: 68  EKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
           E + + A +R    +  +K  E+ N F +  +E L +++E   E REA +  K+E+L++
Sbjct: 64  EVLKQLAEKREHEREVLQKAIEENNNFSKMAEEKLTQKMESIKENREAQLAAKLERLQE 122

The Stathmin family of proteins play an important role in the regulation of the microtubule cytoskeleton. They regulate microtubule dynamics by promoting depolymerization of microtubules and/or preventing polymerisation of tubulin heterodimers. Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
PF00836	140	Stathmin: Stathmin family; InterPro: IPR000956 Sta	100.0

>PF00836 Stathmin: Stathmin family; InterPro: IPR000956 Stathmin is a ubiquitous phosphorylated protein thought to act as an intracellular relay for diverse regulatory pathways [], functioning through a variety of secondary messengers

Probab=100.00  E-value=6.5e-52  Score=316.27  Aligned_cols=126  Identities=30%  Similarity=0.409  Sum_probs=105.9

Q ss_pred             CcccceeccccCCcceeEEEecCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHH
Q psy9760           6 PATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADT-PVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAA   84 (133)
Q Consensus         6 ~~~evk~~~KrasGqaFEVIL~~ps~~~~~p~~~~sp-~kd~SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~   84 (133)
                      +||+|+||+||+||+||||||+||+++++||..++|| ++|+|++|||+||+||||||+|+|+++|++|+++|+|+++|+
T Consensus         1 ~d~~vk~~~kr~sG~aFEVIL~pps~~~~p~~~~s~pk~k~~SleeIqkKLeAAEERRKs~Ea~~l~~laekreh~~ev~   80 (140)
T PF00836_consen    1 EDMEVKELNKRASGQAFEVILKPPSPDSPPPRPLSPPKKKDPSLEEIQKKLEAAEERRKSQEAQVLKKLAEKREHEREVL   80 (140)
T ss_dssp             ---EEEEEEEETTEEEEEEEES--SSSSS--SS--SS------HSCTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             CcchhhhhcccCCCcceEeeeCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999976444333333 389999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhhhhcc
Q psy9760          85 KKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHVSVT  131 (133)
Q Consensus        85 qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~~~~~  131 (133)
                      +|++|+||||+++|+|+|.+||++++|||+|||+++++||++|...|
T Consensus        81 ~Ka~E~n~~f~k~aeEkl~~KmE~~~EnRea~l~a~~erLkek~~h~  127 (140)
T PF00836_consen   81 QKALEENNNFSKMAEEKLNQKMEQYKENREAHLAALKERLKEKEKHA  127 (140)
T ss_dssp             HHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHHHHHHTTTHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999976544

Its phosphorylation and gene expression are regulated throughout development [] and in response to extracellular signals regulating cell proliferation, differentiation and function []. Stathmin, and the related proteins SCG10 and XB3, contain a N-terminal domain (XB3 contains an additional N-terminal hydrophobic region), a 78 amino acid coiled-coil region, and a short C-terminal domain.; GO: 0035556 intracellular signal transduction; PDB: 3RYC_E 3RYH_E 3N2K_E 1Z2B_E 1SA1_E 3HKD_E 3DU7_E 3HKC_E 3HKB_E 3HKE_E ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
3ut5_E	142	Tubulin-colchicine-ustiloxin: Stathmin-like Domain		4e-05
3ryc_E	143	Tubulin: Rb3 Stathmin-Like Domain Complex Length =		4e-05
1sa0_E	142	Tubulin-Colchicine: Stathmin-Like Domain Complex Le		4e-05
4i4t_E	143	Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co		4e-05
4f61_I	240	Tubulin:stathmin-Like Domain Complex Length = 240		7e-04

>pdb|3UT5|E Chain E, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex Length = 142

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 15  KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
           K+  G  ++VIL  P+    P   A+      P +   E I++KL+ AEERR   EAE +
Sbjct: 10  KATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 66
Query: 71  AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R    +  +K  E+ N FI+  KE L +++E + E REA +   +E+L++
Sbjct: 67  KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 122

>pdb|3RYC|E Chain E, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 143

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 15  KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
           K+  G  ++VIL  P+    P   A+      P +   E I++KL+ AEERR   EAE +
Sbjct: 11  KATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 67
Query: 71  AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R    +  +K  E+ N FI+  KE L +++E + E REA +   +E+L++
Sbjct: 68  KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 123

>pdb|1SA0|E Chain E, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 142

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 15  KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
           K   G  ++VIL  P+    P   A+      P +   E I++KL+ AEERR   EAE +
Sbjct: 10  KCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 66
Query: 71  AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R    +  +K  E+ N FI+  KE L +++E + E REA +   +E+L++
Sbjct: 67  KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 122

>pdb|4I4T|E Chain E, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 143

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 15  KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
           K   G  ++VIL  P+    P   A+      P +   E I++KL+ AEERR   EAE +
Sbjct: 11  KCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 67
Query: 71  AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R    +  +K  E+ N FI+  KE L +++E + E REA +   +E+L++
Sbjct: 68  KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 123

>pdb|4F61|I Chain I, Tubulin:stathmin-Like Domain Complex Length = 240

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 15  KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
           K+  G  ++VIL  P+    P   A+      P +   E I++KL+ AEERR   EAE +
Sbjct: 10  KATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 66
Query: 71  AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
              A +R    +  ++  E+ N +I+  KE L +++E + E REA     +E+L++
Sbjct: 67  KHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQE 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
3ryc_E	143	Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, m	9e-17
4f6r_C	87	Stathmin-like domain R1; alpha-tubulin, beta-tubul	1e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04

>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E* Length = 143

 Score = 70.5 bits (172), Expect = 9e-17
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 9   EIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADTPVILRS-ESIEEKLKQAEERRLSLEA 67
           E+    K+  G  ++VIL  P+    P   A+       S E I++KL+ AEERR   EA
Sbjct: 5   EVIELNKATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEA 64

Query: 68  EKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDH 127
           E +   A +R    +  +K  E+ N FI+  KE L +++E + E REA +   +E+L++ 
Sbjct: 65  ELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEK 124

>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene} Length = 87

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 9  EIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADTPVILRS-ESIEEKLKQAEERRLSLEA 67
          E+    K+  G  ++VIL  P+    P   A+       S E I++KL+ AEERR +  A
Sbjct: 4  EVIELNKATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKAHFA 63

Query: 68 EKIAKNAARRSKIEDAAKKRDEKE 91
            + +   +    E+  K ++ KE
Sbjct: 64 AMLERLQEKDKHAEEVRKNKELKE 87

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 46  LRSESIEEKLKQ-AEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEK 104
           L  E   E +++  EE+R  L+ E  A +     +  + AKK  E   E+ ++  E +EK
Sbjct: 80  LTQEP--ESIRKWREEQRKRLQ-ELDAASKVMEQEWREKAKKDLE---EWNQRQSEQVEK 133

Query: 105 RLEISSEKREALINDKMEKL 124
               +    +A        +
Sbjct: 134 NKINNRIADKAFYQQPDADI 153

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 44  VILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLE 103
           ++         + + E ++L +EA  + +       +E+   +   K +E  ++ K  LE
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949

Query: 104 KRLEISSEKREALINDKMEKLKDHVS 129
           K         E   + + EKL+  V 
Sbjct: 950 KM-----NNLEITYSTETEKLRSDVE 970

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
3ryc_E	143	Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, m	100.0
4f61_I	240	Stathmin-like domain R4; alpha-tubulin, beta-tubul	100.0
4f6r_C	87	Stathmin-like domain R1; alpha-tubulin, beta-tubul	100.0
4f61_I	240	Stathmin-like domain R4; alpha-tubulin, beta-tubul	99.94
4f6r_C	87	Stathmin-like domain R1; alpha-tubulin, beta-tubul	92.93

>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*

Probab=100.00  E-value=5.8e-54  Score=327.43  Aligned_cols=123  Identities=31%  Similarity=0.385  Sum_probs=112.4

Q ss_pred             CCcccceeccccCCcceeEEEecCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Q psy9760           5 FPATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADT-PVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDA   83 (133)
Q Consensus         5 ~~~~evk~~~KrasGqaFEVIL~~ps~~~~~p~~~~sp-~kd~SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev   83 (133)
                      ++||+|++||||+|||||||||+|||+++.+|..++|| ++|+||+|||+||+||||||+|+||++|++||++|+|++||
T Consensus         1 ~~d~~vk~l~KrasGqafEvIL~pps~~~~~~~~~s~P~~k~~SleEIqkKLeAAEERRks~Ea~~lk~laekrehe~Ev   80 (143)
T 3ryc_E            1 XADMEVIELNKATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREV   80 (143)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEECCSSCSSCC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhhhhcccCCCCceeeeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999977655444444 49999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhh
Q psy9760          84 AKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDH  127 (133)
Q Consensus        84 ~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~  127 (133)
                      +||++|+|||||++|+|+|++||++++|||+|||++|++||++|
T Consensus        81 lqKa~Een~~F~k~aeEkL~~KME~~kEnReA~laal~erLkek  124 (143)
T 3ryc_E           81 IQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEK  124 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999975

>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}

Probab=100.00  E-value=1.4e-50  Score=329.48  Aligned_cols=125  Identities=29%  Similarity=0.350  Sum_probs=114.6

Q ss_pred             CcccceeccccCCcceeEEEecCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHH
Q psy9760           6 PATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADT-PVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAA   84 (133)
Q Consensus         6 ~~~evk~~~KrasGqaFEVIL~~ps~~~~~p~~~~sp-~kd~SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~   84 (133)
                      .||+|++|+||+|||||||||+|||++++||..++|| ++|+||+|||+||+||||||+|+||++|++||++|+|+++|+
T Consensus         1 ~d~~vk~l~KrasGqafEVILkpps~~~~~~~~~s~P~kk~~SleEIqkKLeAAEERRks~Ea~~lk~laekrEhe~evl   80 (240)
T 4f61_I            1 ADMEVIELNKATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVI   80 (240)
T ss_dssp             CCCEEEEEEECSSCEEEEEEEECCSSCSSCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             CCchhHHhccccCCCceeeeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            4999999999999999999999999977655444444 499999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhhhhc
Q psy9760          85 KKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHVSV  130 (133)
Q Consensus        85 qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~~~~  130 (133)
                      ||++|+|||||++|+++|++||++++|||+|||++|++||++|...
T Consensus        81 qKa~Een~~F~k~aeEkL~~KME~~kEnReA~laal~erLkek~~~  126 (240)
T 4f61_I           81 QRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKH  126 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998654

>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}

Probab=100.00  E-value=6.2e-35  Score=206.88  Aligned_cols=80  Identities=25%  Similarity=0.248  Sum_probs=57.8

Q ss_pred             CcccceeccccCCcceeEEEecCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Q psy9760           6 PATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADT--PVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDA   83 (133)
Q Consensus         6 ~~~evk~~~KrasGqaFEVIL~~ps~~~~~p~~~~sp--~kd~SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev   83 (133)
                      .||+|++||||+|||||||||+|||+++ +|.+++||  ++|+||+|||+||+||+|||+++||++|++|+++|+|++||
T Consensus         1 ~dm~vk~l~KrasGqafEvILkpps~~~-~~~~~~s~Pkkk~~SleeIqkKLeAAeERRks~EA~~L~~Laekreh~~EV   79 (87)
T 4f6r_C            1 ADMEVIELNKATSGQSWEVILKPPSFDG-VPEFNASLPRRRDPSLEEIQKKLEAAEERRKAHFAAMLERLQEKDKHAEEV   79 (87)
T ss_dssp             --------CEETTEEEEEEEEECCCC----------------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhhhcccCCCcceEEEecCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999999866 44455544  49999999999999999999999999999999999999999


Q ss_pred             HHH
Q psy9760          84 AKK   86 (133)
Q Consensus        84 ~qK   86 (133)
                      ++-
T Consensus        80 ~k~   82 (87)
T 4f6r_C           80 RKN   82 (87)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            873

>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}

Probab=99.94  E-value=6.7e-27  Score=190.37  Aligned_cols=83  Identities=27%  Similarity=0.427  Sum_probs=80.8

Q ss_pred             CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q psy9760          46 LRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLK  125 (133)
Q Consensus        46 ~SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLk  125 (133)
                      ..+++||+||+||+|||+++|+++|++||++|+|+++|+||++++|||||+|++++|.+||++++|||+|++++|++||+
T Consensus       144 ~~~eei~~KLeaAeErRk~qea~~Lk~LaekrEHe~eVlqka~e~n~~f~k~~eekl~~KmE~~kEnRea~~~a~~ErL~  223 (240)
T 4f61_I          144 MAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQ  223 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHTGGGTHHHHHHHHHHHHHHHHTTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhh
Q psy9760         126 DHV  128 (133)
Q Consensus       126 e~~  128 (133)
                      +|.
T Consensus       224 ek~  226 (240)
T 4f61_I          224 EKD  226 (240)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            974

>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}

Probab=92.93  E-value=0.12  Score=36.30  Aligned_cols=29  Identities=31%  Similarity=0.570  Sum_probs=24.5

Q ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHhhh
Q psy9760          99 KETLEKRLEISSEKREALINDKMEKLKDH  127 (133)
Q Consensus        99 eEkl~~Kme~~kEnReA~l~al~ekLke~  127 (133)
                      -+.++.||++++|+|.++.+.+.++|.++
T Consensus        44 leeIqkKLeAAeERRks~EA~~L~~Laek   72 (87)
T 4f6r_C           44 LEEIQKKLEAAEERRKAHFAAMLERLQEK   72 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567899999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	3e-08

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (111), Expect = 3e-08
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 8   TEIRCEEKSKGGIKYDVILAEPAG-TPPPLKTAADTPVILRSESIEEKLKQAEERRLSLE 66
            E+    K   G  ++VIL  P+    P    +         E I++KL+ AEERR   E
Sbjct: 3   MEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQE 62

Query: 67  AEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
           AE +   A +R    +  +K  E+ N FI+  KE L +++E + E REA +   +E+L++
Sbjct: 63  AELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 122

Query: 127 H 127
            
Sbjct: 123 K 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1sa0e_	138	Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]	100.0

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.9e-37  Score=226.20  Aligned_cols=124  Identities=31%  Similarity=0.374  Sum_probs=107.9

Q ss_pred             CcccceeccccCCcceeEEEecCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHH
Q psy9760           6 PATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADT-PVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAA   84 (133)
Q Consensus         6 ~~~evk~~~KrasGqaFEVIL~~ps~~~~~p~~~~sp-~kd~SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~   84 (133)
                      +||+|+||+||+||+||||||+|||++..|+..++|| ++++|+++|+.|+.+|++||+++++++++++++.++|+++|+
T Consensus         1 ~~~~~~~~~~~~~g~~fevil~~p~~~~~~~~~~s~p~rk~~s~ee~q~K~~~aeeRr~~~e~e~~~k~~e~~ek~eE~~   80 (138)
T d1sa0e_           1 ADMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVI   80 (138)
T ss_dssp             CCCCCBCCCCCSSCEEEECCCSCCCCC--------------CCCSSTTTTGGGTHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             CCcchhhhccCCCCcceEeeeCCCCCCCCCcCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999865544333333 589999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhhhh
Q psy9760          85 KKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHVS  129 (133)
Q Consensus        85 qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~~~  129 (133)
                      +++.+.+++|+..+++.+..+|+.+.+||+++++++.+|++++..
T Consensus        81 ~k~~E~~~~~~~~~~e~le~k~e~~ee~rea~l~~~~~k~~eee~  125 (138)
T d1sa0e_          81 QKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDK  125 (138)
T ss_dssp             HHHHHHHHHHHHHHSTTTTTTTTHHHHHHHHHHHHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998654