Psyllid ID: psy9773

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MDMEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHcccccEEEccccccHHHHcccccEEEEEEcccccccccccccEEEccccccccccHHHHHHHHHHHHHccccccEEEccccEEEEEEccccccccccccccccccccccHHHHHcccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHccccccccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEccHHHccHHHHHHHcHHHHHHHHHHHHccHHHHcccEEEEEcccccHHHHHHHHHcccEEEEEEHHHHHHHHHHHEEEEEEcccEEEEcccccEEEEEEcccEEcEcEcccHHHHHHHHHHHEEEEEEEEccEEEEEEEEEEcccHccccHcccccccHHHHHHHcccccEEEcccccEEcccHEEEccccccccEEEEEccccccccccEEEEEccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdmevvkdhdeeeyfesytDLEVHKLMLDDTVRNEAYRAaicdnpnifagktvldvgtgtgksillqghgvdhhsfctkvhpldhyapqYLILEVIQNKienvelpekVDIIVSEWMGFYLLHESMIDSVIFARdkflkpegvmypykcilhsapsyspeiFKFWENiageeekkeedeieeEENEEEEEVKQKKNKEEEEEEEEKKEEDEIekeegeneeeEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN
Flexible Loop (DISEMBL)
mdmevvkdhdeeeyfesytdlevHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKeedeieeeeneeeeevkqkknkeeeeeeeekkeedeiekeegeneeeeeeevvkqkkneeeeeeeevlikleeeeen
Low Complexity Region (SEG)
MDMEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAgeeekkeedeieeeeneeeeevkqkknkeeeeeeeekkeedeiekeegeneeeeeeevvkqkkneeeeeeeevlikleeeeeN
Disordered region (IsUnstruct)
*************YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENI************************************************************************************
Disordered Region (DISOPRED)
***********EEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE******************LI*LE*****
Disordered Region (DISEMBL)
************EYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGE*********************************************************************************
Disordered Region (DISPRO)
**********EEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDMEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q9MAT5	383	Protein arginine N-methyl	yes	N/A	0.567	0.373	0.450	3e-31
Q6NWG4	349	Protein arginine N-methyl	yes	N/A	0.626	0.452	0.416	7e-31
Q9URX7	340	Probable protein arginine	yes	N/A	0.634	0.470	0.395	4e-29
Q9SNQ2	380	Protein arginine N-methyl	yes	N/A	0.603	0.4	0.440	4e-29
A2Y953	382	Protein arginine N-methyl	N/A	N/A	0.603	0.397	0.440	4e-29
O13648	543	Ribosomal protein arginin	no	N/A	0.611	0.283	0.419	5e-29
B0JYW5	340	Protein arginine N-methyl	no	N/A	0.626	0.464	0.386	2e-27
Q9NR22	394	Protein arginine N-methyl	yes	N/A	0.638	0.408	0.381	3e-27
P38074	348	HNRNP arginine N-methyltr	yes	N/A	0.623	0.451	0.4	5e-27
Q54EF2	341	Protein arginine N-methyl	yes	N/A	0.611	0.451	0.395	6e-27

>sp|Q9MAT5|ANM10_ARATH Protein arginine N-methyltransferase PRMT10 OS=Arabidopsis thaliana GN=PRMT10 PE=1 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/162 (45%), Positives = 95/162 (58%), Gaps = 19/162 (11%)

Query: 7   KDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILL 66
           K+ D  +YF +Y+ L   K ML D VR +AY  A+  N + F GKTVLDVGTG+G   + 
Sbjct: 28  KEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIW 87

Query: 67  QGHG-------------VDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIV 113
                             DH     K + LDH      I+EVI+  +E++ LPEKVD+I+
Sbjct: 88  SAQAGARKVYAVEATKMADHARALVKANNLDH------IVEVIEGSVEDISLPEKVDVII 141

Query: 114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
           SEWMG++LL ESM DSVI ARD++LKP GVMYP    +  AP
Sbjct: 142 SEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAP 183

Methylates the guanidino nitrogens of arginyl residues in some proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q6NWG4|ANM6_DANRE Protein arginine N-methyltransferase 6 OS=Danio rerio GN=prmt6 PE=2 SV=2

 Score =  134 bits (336), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 10/168 (5%)

Query: 14  YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
           YF+SY+D+ +H+ M+ DTVR   YR  I  N     GK VLDVG GTG   L        
Sbjct: 20  YFDSYSDVTIHEEMIADTVRTNTYRMGIFKNSKSIEGKVVLDVGAGTGVLSLFCAQAGAR 79

Query: 74  HSFCTKVHPLDHYAPQYLIL-------EVIQNKIENVELPEKVDIIVSEWMGFYLLHESM 126
             +  +   +   A + + L       EVI++ +E +EL EKVD+IVSEWMG+ LLHESM
Sbjct: 80  KVYAVEASSIADQAVKIVKLNQMEDRIEVIKSTLETIELAEKVDVIVSEWMGYALLHESM 139

Query: 127 IDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI---FKFWENIAGE 171
           ++SVIFARDK+LKP G++ P +  L+ AP     +     FW  + G+
Sbjct: 140 LNSVIFARDKWLKPGGLILPSRADLYIAPINDVVVEGRLDFWSTVKGQ 187

Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA), with a strong preference for the formation of aDMA. Preferentially methylates arginyl residues present in a glycine and arginine-rich domain and displays preference for monomethylated substrates. Specifically mediates the asymmetric dimethylation of histone H3 'Arg-2' to form H3R2me2a. H3R2me2a represents a specific tag for epigenetic transcriptional repression and is mutually exclusive with methylation on histone H3 'Lys-4' (H3K4me2 and H3K4me3). It thereby acts as a transcription corepressor of various genes such as hoxa2. Also methylates histone H2A and H4 'Arg-3' (H2AR3me and H4R3me, respectively). Acts as a regulator of DNA base excision during DNA repair by mediating the methylation of DNA polymerase beta (polb), leading to stimulate the polymerase activity by enhancing DNA binding and processivity. Methylates hmga1.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 5

>sp|Q9URX7|ANM1_SCHPO Probable protein arginine N-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC890.07c PE=1 SV=2

 Score =  128 bits (322), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 104/172 (60%), Gaps = 12/172 (6%)

Query: 11  EEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHG 70
           ++ YF+SY+   +H+ ML D VR  +YR AI  NP++F  K VLDVG GTG   +     
Sbjct: 16  KDYYFDSYSHWGIHEEMLKDDVRTLSYRDAIMQNPHLFRDKIVLDVGCGTGILSMFCARA 75

Query: 71  VDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLL 122
              H +   +  + H A Q +        + +IQ K+E ++LP EKVDIIVSEWMG++LL
Sbjct: 76  GAKHVYGVDMSEIIHKAVQIVEVNKLSDRITLIQGKMEEIQLPVEKVDIIVSEWMGYFLL 135

Query: 123 HESMIDSVIFARDKFLKPEGVMYPYKCILHSA----PSYSPEIFKFWENIAG 170
           +ESM+D+V+ ARD++L P+G+++P +  +  A      Y  E   FW+++ G
Sbjct: 136 YESMLDTVLVARDRYLAPDGLLFPDRAQIQLAAIEDADYKSEKIGFWDDVYG 187

Probably methylates the guanidino nitrogens of arginyl residues in some proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SNQ2|ANM10_ORYSJ Protein arginine N-methyltransferase PRMT10 OS=Oryza sativa subsp. japonica GN=PRMT10 PE=2 SV=1

 Score =  128 bits (322), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 7/159 (4%)

Query: 7   KDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILL 66
           K+ D   YF +Y+ L   K ML D VR +AY +A+  N + F GK VLDVGTG+G   + 
Sbjct: 25  KEVDFANYFCTYSYLYHQKEMLCDRVRMDAYHSAVFRNAHHFRGKVVLDVGTGSGILAIW 84

Query: 67  QGHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELPEKVDIIVSEWMGF 119
                    +  +   +  +A +         I+EVIQ  +E+V LPEKVD+I+SEWMG+
Sbjct: 85  SAQAGARKVYAVEATNMAEHARELARANDVADIVEVIQGSMEDVVLPEKVDVIISEWMGY 144

Query: 120 YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYS 158
           +LL ESM DSVI ARD++LKP+GVMYP    +  AP  S
Sbjct: 145 FLLRESMFDSVICARDRWLKPDGVMYPSHARMWLAPIRS 183

Methylates the guanidino nitrogens of arginyl residues in some proteins.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A2Y953|ANM10_ORYSI Protein arginine N-methyltransferase PRMT10 OS=Oryza sativa subsp. indica GN=PRMT10 PE=2 SV=1

 Score =  128 bits (322), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 7/159 (4%)

Query: 7   KDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILL 66
           K+ D   YF +Y+ L   K ML D VR +AY +A+  N + F GK VLDVGTG+G   + 
Sbjct: 27  KEVDFANYFCTYSYLYHQKEMLCDRVRMDAYHSAVFRNAHHFRGKVVLDVGTGSGILAIW 86

Query: 67  QGHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELPEKVDIIVSEWMGF 119
                    +  +   +  +A +         I+EVIQ  +E+V LPEKVD+I+SEWMG+
Sbjct: 87  SAQAGARKVYAVEATNMAEHARELARANDVADIVEVIQGSMEDVVLPEKVDVIISEWMGY 146

Query: 120 YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYS 158
           +LL ESM DSVI ARD++LKP+GVMYP    +  AP  S
Sbjct: 147 FLLRESMFDSVICARDRWLKPDGVMYPSHARMWLAPIRS 185

Methylates the guanidino nitrogens of arginyl residues in some proteins.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O13648|ANM3_SCHPO Ribosomal protein arginine N-methytransferase rmt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rmt3 PE=1 SV=3

 Score =  127 bits (320), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 102/186 (54%), Gaps = 32/186 (17%)

Query: 7   KDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILL 66
           K  ++  YFESY   ++H LML+D+VR E YR  +  N +IFAGKTVLDVG GTG  IL 
Sbjct: 213 KADNDSYYFESYAGNDIHFLMLNDSVRTEGYRDFVYHNKHIFAGKTVLDVGCGTG--IL- 269

Query: 67  QGHGVDHHSFCTKVHPLDHYAP------QYLI-----------LEVIQNKIENVELP-EK 108
                    FC K      YA       Q  I           +  I+ KIE++ LP  K
Sbjct: 270 -------SMFCAKAGAKKVYAVDNSDIIQMAISNAFENGLADQITFIRGKIEDISLPVGK 322

Query: 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK----F 164
           VDII+SEWMG+ L  ESMIDSV+ ARD+FL P G+M P +  L    + + E+ +    F
Sbjct: 323 VDIIISEWMGYALTFESMIDSVLVARDRFLAPSGIMAPSETRLVLTATTNTELLEEPIDF 382

Query: 165 WENIAG 170
           W ++ G
Sbjct: 383 WSDVYG 388

Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in ribosomal protein rps2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B0JYW5|ANM6_XENTR Protein arginine N-methyltransferase 6 OS=Xenopus tropicalis GN=prmt6 PE=2 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 10/168 (5%)

Query: 13  EYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVD 72
           EYF+ Y+D+ VH+ M+ DTVR  AY+ A+  N +   GKTVLDVG GTG   +       
Sbjct: 17  EYFQCYSDVSVHEEMIADTVRTNAYKLALLRNHSSLQGKTVLDVGAGTGILSVFSVQAGA 76

Query: 73  HHSFCTKVHPLDHYAPQYLI-------LEVIQNKIENVELPEKVDIIVSEWMGFYLLHES 125
              +  +   +   A Q +        ++V+ + +E+ E+PE+VD IVSEWMG+ L++ES
Sbjct: 77  QAVYAVEASSMSQLACQVVKSNDMENKVKVLNSSVESAEIPEQVDAIVSEWMGYALMYES 136

Query: 126 MIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI---FKFWENIAG 170
           M+ SVI+ARDK+LKP G++ P    L  AP     +     FW  + G
Sbjct: 137 MLPSVIYARDKWLKPGGLILPSCADLFIAPVNDLIVESRLDFWSEVKG 184

Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA), with a strong preference for the formation of aDMA. Preferentially methylates arginyl residues present in a glycine and arginine-rich domain and displays preference for monomethylated substrates. Specifically mediates the asymmetric dimethylation of histone H3 'Arg-2' to form H3R2me2a. H3R2me2a represents a specific tag for epigenetic transcriptional repression and is mutually exclusive with methylation on histone H3 'Lys-4' (H3K4me2 and H3K4me3). It thereby acts as a transcription corepressor of various genes such as hoxa2. Also methylates histone H2A and H4 'Arg-3' (H2AR3me and H4R3me, respectively). Acts as a regulator of DNA base excision during DNA repair by mediating the methylation of DNA polymerase beta (polb), leading to stimulate the polymerase activity by enhancing DNA binding and processivity. Methylates hmga1.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 5

>sp|Q9NR22|ANM8_HUMAN Protein arginine N-methyltransferase 8 OS=Homo sapiens GN=PRMT8 PE=1 SV=2

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 12/173 (6%)

Query: 10  DEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGH 69
             + YF+SY    +H+ ML D VR   YR ++  N ++F  K VLDVG+GTG   +    
Sbjct: 72  SRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAK 131

Query: 70  GVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYL 121
                 F  +   +  Y+ + +       I+ + + K+E VELP EKVDII+SEWMG+ L
Sbjct: 132 AGAKKVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCL 191

Query: 122 LHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENIAG 170
            +ESM+++VIFARDK+LKP G+M+P +  L+        Y      +WEN+ G
Sbjct: 192 FYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYG 244

Membrane-associated arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Able to mono- and dimethylate EWS protein; however its precise role toward EWS remains unclear as it still interacts with fully methylated EWS.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P38074|HMT1_YEAST HNRNP arginine N-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HMT1 PE=1 SV=1

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 106/175 (60%), Gaps = 18/175 (10%)

Query: 11  EEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG-KSILLQGH 69
           E+ YF SY    +H+ ML DTVR  +YR AI  N ++F  K VLDVG GTG  S+    H
Sbjct: 20  EQHYFNSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKH 79

Query: 70  G------VDHHS---FCTKVHPLDHYAPQYLILEVIQNKIENVELP-EKVDIIVSEWMGF 119
           G      VD  S      ++  L+ ++ +   + +++ K+E+V LP  KVDII+SEWMG+
Sbjct: 80  GAKHVIGVDMSSIIEMAKELVELNGFSDK---ITLLRGKLEDVHLPFPKVDIIISEWMGY 136

Query: 120 YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSA----PSYSPEIFKFWENIAG 170
           +LL+ESM+D+V++ARD +L   G+++P KC +H A      Y  E   +W+++ G
Sbjct: 137 FLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYG 191

Methylates arginines in a variety of RNA-binding proteins. Methylates NOP3. Can catalyze both the mono- and asymmetric dimethylation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q54EF2|ANM1_DICDI Protein arginine N-methyltransferase 1 OS=Dictyostelium discoideum GN=prmt1 PE=3 SV=1

 Score =  120 bits (302), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 99/172 (57%), Gaps = 18/172 (10%)

Query: 14  YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGH---- 69
           YF+SY+   +H+ ML D VR  AYR AI +N  +F GK VLDVG GTG   +        
Sbjct: 23  YFDSYSHFGIHEEMLKDEVRTLAYRRAIINNRKLFEGKVVLDVGCGTGILCMFAAQAGAK 82

Query: 70  ---GVDHH---SFCTKVHPLDHYAPQYLILEVIQNKIENVELP-EKVDIIVSEWMGFYLL 122
              GVD+        K+   +++      + +I+ K+E V LP +KVDII+SEWMG+++L
Sbjct: 83  MVIGVDNSEMLPIAQKIITANNFDKT---ITLIKGKMEEVVLPVDKVDIIISEWMGYFML 139

Query: 123 HESMIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENIAG 170
           +E M+D+V++ARDK+L P GV+ P K  L+        Y  E   +W N+ G
Sbjct: 140 YEGMLDTVLYARDKYLVPGGVILPDKASLYITAIEDQDYKEEKINYWNNVYG 191

Arginine methyltransferase that methylates the guanidino nitrogens of arginyl residues present in proteins such as ribonucleoproteins and histones.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
193713732	360	PREDICTED: probable protein arginine N-m	0.650	0.455	0.470	4e-42
158299461	356	AGAP008846-PA [Anopheles gambiae str. PE	0.674	0.477	0.452	1e-36
195051274	342	GH13621 [Drosophila grimshawi] gi|193900	0.702	0.517	0.452	2e-35
195384872	341	GJ13894 [Drosophila virilis] gi|19414759	0.722	0.533	0.441	4e-35
91085911	428	PREDICTED: similar to AGAP008846-PA [Tri	0.686	0.404	0.427	5e-35
195434106	340	GK14886 [Drosophila willistoni] gi|19416	0.738	0.547	0.423	1e-34
332372526	356	unknown [Dendroctonus ponderosae]	0.619	0.438	0.446	1e-34
195118752	341	GI20553 [Drosophila mojavensis] gi|19391	0.722	0.533	0.425	2e-34
440799897	439	methyltransferase domain containing prot	0.626	0.359	0.485	7e-34
270010158	401	hypothetical protein TcasGA2_TC009521 [T	0.670	0.421	0.431	1e-33

>gi|193713732|ref|XP_001944117.1| PREDICTED: probable protein arginine N-methyltransferase 6-like [Acyrthosiphon pisum]

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/189 (47%), Positives = 119/189 (62%), Gaps = 25/189 (13%)

Query: 3   MEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG- 61
           M  + D D + YF SY DLEVHKLM+ DT R EAY+ AI  + ++F GKTVLDVG GTG 
Sbjct: 1   MTELTDMDADNYFSSYGDLEVHKLMIQDTARTEAYKNAILSSRSVFEGKTVLDVGAGTGI 60

Query: 62  KSILLQGHGVDHHSFCTKVHPL---------------DHYAPQYLILEVIQNKIENVELP 106
            SI     G       TKV  +               +H++     +EV+  K+E+V LP
Sbjct: 61  LSIFCAQAGA------TKVFAVEASKTAEMARKLVAENHFSDT---IEVVYGKVEDVTLP 111

Query: 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWE 166
            KVDIIVSEWMGFY+LHESM+DSVI ARDKFLKP+G+M+P  C L+++P   P+++  W+
Sbjct: 112 CKVDIIVSEWMGFYMLHESMLDSVIMARDKFLKPDGLMFPSHCTLYASPCALPDLYSEWD 171

Query: 167 NIAGEEEKK 175
           N+ G + + 
Sbjct: 172 NVCGVKMRS 180

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299461|ref|XP_319588.4| AGAP008846-PA [Anopheles gambiae str. PEST] gi|157013530|gb|EAA14811.4| AGAP008846-PA [Anopheles gambiae str. PEST]

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/179 (45%), Positives = 107/179 (59%), Gaps = 9/179 (5%)

Query: 1   MDMEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGT 60
             ME     D   YF+SY DL+VH+LML D  R EAY+ AI  N  +F GKTVLDVG GT
Sbjct: 1   FSMEFTDQIDPASYFDSYEDLKVHELMLTDQPRQEAYQKAILGNRALFEGKTVLDVGAGT 60

Query: 61  GKSILLQGHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELPE--KVDI 111
           G   +          +  +   L   A   +       ++EV + K+E+ +LPE  +VDI
Sbjct: 61  GILSIFCAQAGASKVYAVEASNLARLARAVVEENQLQAVIEVSECKVEDFQLPEGERVDI 120

Query: 112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAG 170
           IVSEWMGF+LLHE M+DSV++ARDKFLKP G+M+P    L+ AP   P  F  WE+++G
Sbjct: 121 IVSEWMGFFLLHEGMLDSVLYARDKFLKPNGLMFPDTATLYVAPCSVPSRFDRWESLSG 179

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195051274|ref|XP_001993064.1| GH13621 [Drosophila grimshawi] gi|193900123|gb|EDV98989.1| GH13621 [Drosophila grimshawi]

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/190 (45%), Positives = 118/190 (62%), Gaps = 13/190 (6%)

Query: 12  EEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG-------KSI 64
           + YF  Y +LEVH+LML D  R EAY  AI  N ++F  K VLDVG GTG       K+ 
Sbjct: 2   DTYFTEYENLEVHELMLKDRPRQEAYCNAILKNKDLFKDKVVLDVGAGTGILSAFCAKAG 61

Query: 65  LLQGHGVDHHSFCTKVHPLDHYAPQYL--ILEVIQNKIENVELP---EKVDIIVSEWMGF 119
               + V+  +  TKV  LD +    L  I++VI +KIE   LP   EKVDIIVSEWMGF
Sbjct: 62  ARLVYAVEASNLATKV-ALDLFDENNLTGIVKVIHSKIEEFALPANAEKVDIIVSEWMGF 120

Query: 120 YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDE 179
           YLLHE M+DSV+FARD FLKP+G+++P +C ++ AP   P +F +W+NI G   ++   +
Sbjct: 121 YLLHEGMLDSVLFARDHFLKPDGLIFPSECTIYVAPCSVPALFDYWQNIDGVSMERFASK 180

Query: 180 IEEEENEEEE 189
           +  +++   E
Sbjct: 181 LRLQKSTRPE 190

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195384872|ref|XP_002051136.1| GJ13894 [Drosophila virilis] gi|194147593|gb|EDW63291.1| GJ13894 [Drosophila virilis]

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/195 (44%), Positives = 118/195 (60%), Gaps = 13/195 (6%)

Query: 14  YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG--KSILLQG--- 68
           YF  Y +LEVH+LML D  R EAY  AI  N  +F  K VLDVG GTG   +   Q    
Sbjct: 4   YFTEYENLEVHELMLRDRPRQEAYYNAILKNKELFKDKIVLDVGAGTGILSAFCAQAGAK 63

Query: 69  --HGVDHHSFCTKVHPLDHYAPQYL--ILEVIQNKIENVELP---EKVDIIVSEWMGFYL 121
             + V+  +  TKV  LD      L  +++VI ++IE   LP   EKVDIIVSEWMGFYL
Sbjct: 64  LVYAVEASNLATKV-ALDLIDENGLTSVVKVIHSQIEEFVLPATAEKVDIIVSEWMGFYL 122

Query: 122 LHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIE 181
           LHE M+DSV+FARD FLKP+G+M+P +C +  AP   P +F +W+N+ G   ++   ++ 
Sbjct: 123 LHEGMLDSVLFARDHFLKPDGLMFPSECTIFVAPCSVPTLFDYWQNVDGVNMERFASKLR 182

Query: 182 EEENEEEEEVKQKKN 196
            +++   E ++ K N
Sbjct: 183 LQKSTRPEIIQLKSN 197

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085911|ref|XP_969126.1| PREDICTED: similar to AGAP008846-PA [Tribolium castaneum]

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 106/180 (58%), Gaps = 7/180 (3%)

Query: 23  VHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP 82
           +H++ML D  RN+AY+ AI DN +   G+ VLDVG GTG   +          +  +   
Sbjct: 9   IHQIMLRDAPRNKAYKQAIFDNADQILGRRVLDVGAGTGILSVFCAQAGAAKVYAVEASN 68

Query: 83  LDHYAPQYL-------ILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARD 135
           +   A + +       ++EVI ++IE+  LPEKVDIIVSEWMGFYLLHE M+DSVIFARD
Sbjct: 69  VSKIAREVIKENGFDKVIEVINSRIEDTVLPEKVDIIVSEWMGFYLLHEGMLDSVIFARD 128

Query: 136 KFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKK 195
           KFLKP G+M+P    ++SAP   P +F  W NI G   K   +++  E + +   V   K
Sbjct: 129 KFLKPGGLMFPESATIYSAPCCVPSMFDSWGNIEGVSMKSFSEKLRTEASHKPSTVSVAK 188

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195434106|ref|XP_002065044.1| GK14886 [Drosophila willistoni] gi|194161129|gb|EDW76030.1| GK14886 [Drosophila willistoni]

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 114/196 (58%), Gaps = 10/196 (5%)

Query: 11  EEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHG 70
           E  YF  Y +LE+H+LML D  R EAY  AI  N  +F  K VLDVG GTG       + 
Sbjct: 2   ETNYFTEYENLEIHELMLKDRPRQEAYYNAILRNRELFKDKIVLDVGAGTGILSAFCANA 61

Query: 71  VDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP---EKVDIIVSEWMGFY 120
                +  +   L   A + +       I++VI+ K+E  ELP   EKVDIIVSEWMGFY
Sbjct: 62  GARLVYAIEASNLAAIAVELIHDNNLTSIVKVIKCKVEEFELPTNAEKVDIIVSEWMGFY 121

Query: 121 LLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEI 180
           LLHE M+DSV+FARDKFLKP+G+M+P +C +  AP   P +F ++ N+ G +  K   ++
Sbjct: 122 LLHEGMLDSVLFARDKFLKPDGLMFPTECTIFVAPCSLPSLFDYYSNVDGVKMDKFARKL 181

Query: 181 EEEENEEEEEVKQKKN 196
             +++   E  + K N
Sbjct: 182 RLQKSTRPEITQLKPN 197

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372526|gb|AEE61405.1| unknown [Dendroctonus ponderosae]

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 111/188 (59%), Gaps = 32/188 (17%)

Query: 3   MEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK 62
           MEV  ++  + YF+SY DL++HKLML D  RN AY  AI +N     GK VLDVG GTG 
Sbjct: 1   MEV--ENSNDSYFKSYEDLQIHKLMLSDEPRNSAYHEAIFNNKTSIEGKVVLDVGAGTG- 57

Query: 63  SILLQGHGVDHHSFCTKVHPLDHYAPQYL-----------------ILEVIQNKIENV-- 103
            IL          FC K      YA +                   I++VI ++IE++  
Sbjct: 58  -IL--------SVFCAKAGAKTVYAVEASETYKLAADIVKENQMENIIQVIHSRIEDLTS 108

Query: 104 -ELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIF 162
            ++P KVDIIVSEWMGFYLLHE M+DSVI ARD+FLKP G+++P    +++ P   P I+
Sbjct: 109 AQIPGKVDIIVSEWMGFYLLHEGMLDSVIIARDRFLKPNGLIFPEAATIYATPCSIPSIY 168

Query: 163 KFWENIAG 170
           K+WEN+ G
Sbjct: 169 KYWENVHG 176

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195118752|ref|XP_002003900.1| GI20553 [Drosophila mojavensis] gi|193914475|gb|EDW13342.1| GI20553 [Drosophila mojavensis]

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/195 (42%), Positives = 117/195 (60%), Gaps = 13/195 (6%)

Query: 14  YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG--KSILLQG--- 68
           YF  Y +LEVH+LML D  R EAY  AI  N  +F  K V+DVG GTG   +   Q    
Sbjct: 4   YFTEYENLEVHELMLRDRPRQEAYYNAIMKNKELFKDKVVMDVGAGTGILSAFCAQAGAR 63

Query: 69  --HGVDHHSFCTKVHPLDHYAPQYL--ILEVIQNKIENVELP---EKVDIIVSEWMGFYL 121
             + ++  +  TKV  LD      L  I++VI ++IE+  LP   EKVDIIVSEWMGFYL
Sbjct: 64  LVYAIEASNLATKV-ALDLIEDNGLTNIVKVIHSQIEDFVLPSSAEKVDIIVSEWMGFYL 122

Query: 122 LHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIE 181
           LHE M+DSV+FARD FLKP G+++P +C ++ AP   P ++ +W+N+ G    K   ++ 
Sbjct: 123 LHEGMLDSVLFARDNFLKPNGLLFPSECTIYVAPCSVPSLYDYWQNVDGVNMGKFASKLR 182

Query: 182 EEENEEEEEVKQKKN 196
            +++   E ++   N
Sbjct: 183 LQKSTRPEIIQLTPN 197

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|440799897|gb|ELR20940.1| methyltransferase domain containing protein [Acanthamoeba castellanii str. Neff]

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 107/171 (62%), Gaps = 13/171 (7%)

Query: 12  EEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGV 71
           E+YFESY DL VH LML D  R+EAYR AI  N   F GK VLDVGTGTG   +      
Sbjct: 38  EDYFESYEDLGVHHLMLRDRPRSEAYRKAIEGNKEAFQGKVVLDVGTGTGLLAMFAARAG 97

Query: 72  DHHSFCTKVHPLDHYAPQYLI--------LEVIQNKIENVELPEKVDIIVSEWMGFYLLH 123
               +  +   + + A Q L+        ++VI+ ++E VELPEKVDIIVSEWMGFYLLH
Sbjct: 98  AKKVYAVEGSNMANVA-QLLVEKNGFADRIQVIKGRMEEVELPEKVDIIVSEWMGFYLLH 156

Query: 124 ESMIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENIAG 170
           ESM+DSV++ARDK+L   G+++P +  +  AP    SY  E   FWE++ G
Sbjct: 157 ESMLDSVLYARDKWLNEGGLVFPSRSRIFLAPVNLDSYYEEHVTFWEDVYG 207

Source: Acanthamoeba castellanii str. Neff

Species: Acanthamoeba castellanii

Genus: Acanthamoeba

Superkingdom: Eukaryota

>gi|270010158|gb|EFA06606.1| hypothetical protein TcasGA2_TC009521 [Tribolium castaneum]

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/176 (43%), Positives = 102/176 (57%), Gaps = 7/176 (3%)

Query: 27  MLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHY 86
           ML D  RN+AY+ AI DN +   G+ VLDVG GTG   +          +  +   +   
Sbjct: 1   MLRDAPRNKAYKQAIFDNADQILGRRVLDVGAGTGILSVFCAQAGAAKVYAVEASNVSKI 60

Query: 87  APQYL-------ILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLK 139
           A + +       ++EVI ++IE+  LPEKVDIIVSEWMGFYLLHE M+DSVIFARDKFLK
Sbjct: 61  AREVIKENGFDKVIEVINSRIEDTVLPEKVDIIVSEWMGFYLLHEGMLDSVIFARDKFLK 120

Query: 140 PEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKK 195
           P G+M+P    ++SAP   P +F  W NI G   K   +++  E + +   V   K
Sbjct: 121 PGGLMFPESATIYSAPCCVPSMFDSWGNIEGVSMKSFSEKLRTEASHKPSTVSVAK 176

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
FB|FBgn0032329	341	Art8 "Arginine methyltransfera	0.611	0.451	0.467	6e-32
ZFIN|ZDB-GENE-040914-7	349	prmt6 "protein arginine methyl	0.638	0.461	0.410	6.4e-28
POMBASE|SPAC890.07c	340	rmt1 "type I protein arginine	0.626	0.464	0.394	8.2e-28
TAIR|locus:2010607	383	PRMT10 "protein arginine methy	0.575	0.378	0.451	1e-27
SGD|S000000238	348	HMT1 "Nuclear SAM-dependent mo	0.623	0.451	0.397	2.8e-27
ASPGD|ASPL0000009198	345	rmtA [Emericella nidulans (tax	0.662	0.484	0.396	9.4e-27
FB|FBgn0038306	516	Art3 "Arginine methyltransfera	0.599	0.292	0.409	2.3e-26
UNIPROTKB|F1PTS0	394	PRMT8 "Uncharacterized protein	0.615	0.393	0.395	4e-26
UNIPROTKB|Q9NR22	394	PRMT8 "Protein arginine N-meth	0.615	0.393	0.395	4e-26
UNIPROTKB|F1SKY6	379	PRMT8 "Uncharacterized protein	0.615	0.408	0.395	4e-26

FB|FBgn0032329 Art8 "Arginine methyltransferase 8" [Drosophila melanogaster (taxid:7227)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 78/167 (46%), Positives = 104/167 (62%)

Query:    14 YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG-------KSILL 66
             YF+ Y +LE+H+LML D  R EAY  AI  N ++F  K V+DVG GTG       K+   
Sbjct:     5 YFDEYENLEIHELMLKDRPRQEAYYNAILGNKDLFKDKIVMDVGAGTGILSAFCAKAGAR 64

Query:    67 QGHGVDHHSFCTKVHPLDHYAPQYL--ILEVIQNKIENVELP---EKVDIIVSEWMGFYL 121
               + V+  +  TKV  LD      L  +++VIQ+++E   LP   EKVDIIVSEWMGFYL
Sbjct:    65 LVYAVEASNVATKV-ALDLIEDNGLTNVVKVIQSRVEEFVLPAEAEKVDIIVSEWMGFYL 123

Query:   122 LHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENI 168
             LHE M+DSV+ ARDKFLK  G+++P +C +  AP   P +F  W N+
Sbjct:   124 LHEGMLDSVLLARDKFLKEGGLLFPSECTIFVAPCSVPSLFDDWHNV 170

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=ISS

GO:0034970 "histone H3-R2 methylation" evidence=IDA

GO:0070611 "histone methyltransferase activity (H3-R2 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

ZFIN|ZDB-GENE-040914-7 prmt6 "protein arginine methyltransferase 6" [Danio rerio (taxid:7955)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 71/173 (41%), Positives = 98/173 (56%)

Query:     8 DHDEEEY--FESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSIL 65
             D   E+Y  F+SY+D+ +H+ M+ DTVR   YR  I  N     GK VLDVG GTG   L
Sbjct:    12 DRSTEDYMYFDSYSDVTIHEEMIADTVRTNTYRMGIFKNSKSIEGKVVLDVGAGTGVLSL 71

Query:    66 LQGHGVDHHSFCTKVHPLDHYAPQYLIL-------EVIQNKIENVELPEKVDIIVSEWMG 118
                       +  +   +   A + + L       EVI++ +E +EL EKVD+IVSEWMG
Sbjct:    72 FCAQAGARKVYAVEASSIADQAVKIVKLNQMEDRIEVIKSTLETIELAEKVDVIVSEWMG 131

Query:   119 FYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI---FKFWENI 168
             + LLHESM++SVIFARDK+LKP G++ P +  L+ AP     +     FW  +
Sbjct:   132 YALLHESMLNSVIFARDKWLKPGGLILPSRADLYIAPINDVVVEGRLDFWSTV 184

GO:0006479 "protein methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0008469 "histone-arginine N-methyltransferase activity" evidence=IEA

GO:0035242 "protein-arginine omega-N asymmetric methyltransferase activity" evidence=ISS

GO:0044020 "histone methyltransferase activity (H4-R3 specific)" evidence=ISS

GO:0034970 "histone H3-R2 methylation" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0035241 "protein-arginine omega-N monomethyltransferase activity" evidence=ISS

GO:0070611 "histone methyltransferase activity (H3-R2 specific)" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0070612 "histone methyltransferase activity (H2A-R3 specific)" evidence=ISS

GO:0019919 "peptidyl-arginine methylation, to asymmetrical-dimethyl arginine" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

POMBASE|SPAC890.07c rmt1 "type I protein arginine N-methyltransferase Rmt1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 67/170 (39%), Positives = 103/170 (60%)

Query:    11 EEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHG 70
             ++ YF+SY+   +H+ ML D VR  +YR AI  NP++F  K VLDVG GTG   +     
Sbjct:    16 KDYYFDSYSHWGIHEEMLKDDVRTLSYRDAIMQNPHLFRDKIVLDVGCGTGILSMFCARA 75

Query:    71 VDHHSFCTKVHPLDHYAPQYLILE-------VIQNKIENVELP-EKVDIIVSEWMGFYLL 122
                H +   +  + H A Q + +        +IQ K+E ++LP EKVDIIVSEWMG++LL
Sbjct:    76 GAKHVYGVDMSEIIHKAVQIVEVNKLSDRITLIQGKMEEIQLPVEKVDIIVSEWMGYFLL 135

Query:   123 HESMIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENI 168
             +ESM+D+V+ ARD++L P+G+++P +  +  A      Y  E   FW+++
Sbjct:   136 YESMLDTVLVARDRYLAPDGLLFPDRAQIQLAAIEDADYKSEKIGFWDDV 185

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=IMP

GO:0019919 "peptidyl-arginine methylation, to asymmetrical-dimethyl arginine" evidence=TAS

TAIR|locus:2010607 PRMT10 "protein arginine methyltransferase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 74/164 (45%), Positives = 96/164 (58%)

Query:     5 VVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSI 64
             V K+ D  +YF +Y+ L   K ML D VR +AY  A+  N + F GKTVLDVGTG+G   
Sbjct:    26 VDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILA 85

Query:    65 LLQGHG-------------VDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDI 111
             +                   DH     K + LDH      I+EVI+  +E++ LPEKVD+
Sbjct:    86 IWSAQAGARKVYAVEATKMADHARALVKANNLDH------IVEVIEGSVEDISLPEKVDV 139

Query:   112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
             I+SEWMG++LL ESM DSVI ARD++LKP GVMYP    +  AP
Sbjct:   140 IISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAP 183

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA;ISS

GO:0008469 "histone-arginine N-methyltransferase activity" evidence=IDA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI;IMP

GO:0016277 "[myelin basic protein

GO:0019919 "peptidyl-arginine methylation, to asymmetrical-dimethyl arginine" evidence=IDA

GO:0035241 "protein-arginine omega-N monomethyltransferase activity" evidence=IDA

GO:0035242 "protein-arginine omega-N asymmetric methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

SGD|S000000238 HMT1 "Nuclear SAM-dependent mono- and asymmetric arginine dimethylating met" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 68/171 (39%), Positives = 101/171 (59%)

Query:    11 EEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG-KSILLQGH 69
             E+ YF SY    +H+ ML DTVR  +YR AI  N ++F  K VLDVG GTG  S+    H
Sbjct:    20 EQHYFNSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKH 79

Query:    70 GVDHHSFCTKVHPLDHYAPQYLILE-------VIQNKIENVELP-EKVDIIVSEWMGFYL 121
             G  H      +  +   A + + L        +++ K+E+V LP  KVDII+SEWMG++L
Sbjct:    80 GAKH-VIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL 138

Query:   122 LHESMIDSVIFARDKFLKPEGVMYPYKCILHSA----PSYSPEIFKFWENI 168
             L+ESM+D+V++ARD +L   G+++P KC +H A      Y  E   +W+++
Sbjct:   139 LYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDV 189

GO:0006406 "mRNA export from nucleus" evidence=IGI

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0035241 "protein-arginine omega-N monomethyltransferase activity" evidence=IMP;IDA

GO:0035242 "protein-arginine omega-N asymmetric methyltransferase activity" evidence=IMP;IDA

GO:0018216 "peptidyl-arginine methylation" evidence=IMP;IDA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IMP

GO:0060567 "negative regulation of DNA-dependent transcription, termination" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

ASPGD|ASPL0000009198 rmtA [Emericella nidulans (taxid:162425)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 71/179 (39%), Positives = 100/179 (55%)

Query:     2 DMEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG 61
             D  V  DH E  YF SY    +H+ ML D VR  +YR +I  N +IF  K VLDVG GTG
Sbjct:    14 DRMVGMDHAEVRYFTSYDHHGIHEEMLKDDVRTRSYRDSIYQNRHIFKDKVVLDVGCGTG 73

Query:    62 KSILLQG-----H--GVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELP-EKVDIIV 113
                +        H  GVD  S   K   +         + ++Q K+E V+LP   VDII+
Sbjct:    74 ILSMFAAKAGAKHVIGVDMSSIIEKAREIVAVNGLADKITLLQGKMEEVQLPFPSVDIII 133

Query:   114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENI 168
             SEWMG++LL+ESM+D+V++ARD++L P G ++P K  ++ A      Y  +   FW+N+
Sbjct:   134 SEWMGYFLLYESMLDTVLYARDRYLVPGGKIFPDKATMYLAGIEDGEYKDDKIGFWDNV 192

GO:0044020 "histone methyltransferase activity (H4-R3 specific)" evidence=IDA

GO:0018195 "peptidyl-arginine modification" evidence=IDA

GO:0008469 "histone-arginine N-methyltransferase activity" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=IEA

GO:0060567 "negative regulation of DNA-dependent transcription, termination" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0018216 "peptidyl-arginine methylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0035242 "protein-arginine omega-N asymmetric methyltransferase activity" evidence=IEA

GO:0035241 "protein-arginine omega-N monomethyltransferase activity" evidence=IEA

FB|FBgn0038306 Art3 "Arginine methyltransferase 3" [Drosophila melanogaster (taxid:7227)]

 Score = 302 (111.4 bits), Expect = 2.3e-26, P = 2.3e-26
 Identities = 72/176 (40%), Positives = 101/176 (57%)

Query:    11 EEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG-KSILLQGH 69
             + EYF+SY    +H  ML D VR   YRA++  N  +  GKTVLDVG GTG  SI     
Sbjct:   205 DNEYFKSYAHFGIHHEMLSDKVRTSTYRASLLQNEAVVRGKTVLDVGCGTGILSIFASKA 264

Query:    70 GVDHHSFCTKVHPLDHYAPQYLILEVIQ-NKIENVEL----------PE-KVDIIVSEWM 117
             G        +V  +D+    Y  +++I+ NK+ENVEL          PE K DII+SEWM
Sbjct:   265 GA------ARVVGIDNSDIVYTAMDIIRKNKVENVELIKGRLEDTDLPETKYDIIISEWM 318

Query:   118 GFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH-----SAPSYSPEIFKFWENI 168
             G++LL+ESM+DS+I+AR+  L P G++ P +C L          Y+ E+ +FW N+
Sbjct:   319 GYFLLYESMLDSIIYARENHLNPNGIILPSRCTLSLLGYGDDTLYADEV-EFWSNV 373

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

UNIPROTKB|F1PTS0 PRMT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 66/167 (39%), Positives = 98/167 (58%)

Query:    14 YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
             YF+SY    +H+ ML D VR   YR ++  N ++F  K VLDVG+GTG   +        
Sbjct:    76 YFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAK 135

Query:    74 HSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHES 125
               F  +   +  Y+ + +       I+ + + K+E VELP EKVDII+SEWMG+ L +ES
Sbjct:   136 KVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYES 195

Query:   126 MIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI--FK--FWENI 168
             M+++VIFARDK+LKP G+M+P +  L+       +   FK  +WEN+
Sbjct:   196 MLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENV 242

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9NR22 PRMT8 "Protein arginine N-methyltransferase 8" [Homo sapiens (taxid:9606)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 66/167 (39%), Positives = 98/167 (58%)

Query:    14 YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
             YF+SY    +H+ ML D VR   YR ++  N ++F  K VLDVG+GTG   +        
Sbjct:    76 YFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAK 135

Query:    74 HSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHES 125
               F  +   +  Y+ + +       I+ + + K+E VELP EKVDII+SEWMG+ L +ES
Sbjct:   136 KVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYES 195

Query:   126 MIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI--FK--FWENI 168
             M+++VIFARDK+LKP G+M+P +  L+       +   FK  +WEN+
Sbjct:   196 MLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENV 242

GO:0005737 "cytoplasm" evidence=IEA

GO:0035242 "protein-arginine omega-N asymmetric methyltransferase activity" evidence=IDA

GO:0018216 "peptidyl-arginine methylation" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0035241 "protein-arginine omega-N monomethyltransferase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008469 "histone-arginine N-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0016571 "histone methylation" evidence=IDA

GO:0019919 "peptidyl-arginine methylation, to asymmetrical-dimethyl arginine" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043393 "regulation of protein binding" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0034969 "histone arginine methylation" evidence=IDA

UNIPROTKB|F1SKY6 PRMT8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 66/167 (39%), Positives = 98/167 (58%)

Query:    14 YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
             YF+SY    +H+ ML D VR   YR ++  N ++F  K VLDVG+GTG   +        
Sbjct:    61 YFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAK 120

Query:    74 HSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHES 125
               F  +   +  Y+ + +       I+ + + K+E VELP EKVDII+SEWMG+ L +ES
Sbjct:   121 KVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYES 180

Query:   126 MIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI--FK--FWENI 168
             M+++VIFARDK+LKP G+M+P +  L+       +   FK  +WEN+
Sbjct:   181 MLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENV 227

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0035242 "protein-arginine omega-N asymmetric methyltransferase activity" evidence=IEA

GO:0035241 "protein-arginine omega-N monomethyltransferase activity" evidence=IEA

GO:0008469 "histone-arginine N-methyltransferase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	252
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	9e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	8e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	9e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-06
pfam04147	809	pfam04147, Nop14, Nop14-like family	1e-06
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	7e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	8e-06
pfam04147	809	pfam04147, Nop14, Nop14-like family	8e-06
COG5137	279	COG5137, COG5137, Histone chaperone involved in ge	2e-05
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-05
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-05
pfam03985	431	pfam03985, Paf1, Paf1	3e-05
pfam05185	445	pfam05185, PRMT5, PRMT5 arginine-N-methyltransfera	3e-05
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	4e-05
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	6e-05
pfam03344	715	pfam03344, Daxx, Daxx Family	8e-05
pfam03985	431	pfam03985, Paf1, Paf1	8e-05
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	8e-05
pfam03344	715	pfam03344, Daxx, Daxx Family	9e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
pfam05285	317	pfam05285, SDA1, SDA1	1e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	1e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	2e-04
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	2e-04
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	2e-04
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	2e-04
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	2e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	3e-04
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	3e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	3e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	4e-04
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	4e-04
pfam05758	832	pfam05758, Ycf1, Ycf1	4e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	5e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	5e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	5e-04
pfam05758	832	pfam05758, Ycf1, Ycf1	5e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	6e-04
pfam05285	317	pfam05285, SDA1, SDA1	6e-04
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	6e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-04
pfam05285	317	pfam05285, SDA1, SDA1	7e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	7e-04
pfam00183	529	pfam00183, HSP90, Hsp90 protein	7e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	8e-04
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	8e-04
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	8e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	9e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
TIGR01069	771	TIGR01069, mutS2, MutS2 family protein	0.001
PLN03142	1033	PLN03142, PLN03142, Probable chromatin-remodeling	0.001
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.001
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.001
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	0.001
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	0.001
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.001
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.001
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.002
pfam03344	715	pfam03344, Daxx, Daxx Family	0.002
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.002
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	0.002
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	0.002
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	0.002
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	0.002
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	0.002
pfam10310	436	pfam10310, DUF2413, Protein of unknown function (D	0.002
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.002
cd02988	192	cd02988, Phd_like_VIAF, Phosducin (Phd)-like famil	0.002
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.002
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.002
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.002
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	0.002
PRK12903	925	PRK12903, secA, preprotein translocase subunit Sec	0.002
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.003
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.003
pfam05285	317	pfam05285, SDA1, SDA1	0.003
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	0.003
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	0.003
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	0.003
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.003
pfam00901	507	pfam00901, Orbi_VP5, Orbivirus outer capsid protei	0.003
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.003
pfam09756	189	pfam09756, DDRGK, DDRGK domain	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.004
pfam05758	832	pfam05758, Ycf1, Ycf1	0.004
pfam00183	529	pfam00183, HSP90, Hsp90 protein	0.004
PLN03142	1033	PLN03142, PLN03142, Probable chromatin-remodeling	0.004
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.004
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.004
PRK09202	470	PRK09202, nusA, transcription elongation factor Nu	0.004
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	0.004

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 27/99 (27%), Positives = 53/99 (53%)

Query: 143 VMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEE 202
           V+     I    P  +  +  F E    E E     +   ++ ++  E  +KK +EE++E
Sbjct: 370 VLPFLSIIFKHNPELAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKE 429

Query: 203 EEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
           +++K    + ++EE E E+E++EE  ++++ E EEE+EE
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468

Length = 482

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 6/81 (7%)

Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
           E + E    + E  +E  E +     + E +++EK  +     + G++EEEEEEE  +++
Sbjct: 816 EGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEE 875

Query: 232 KNEEEEEEEEVLIKLEEEEEN 252
           + EEEEEEE      EEEEEN
Sbjct: 876 EEEEEEEEE------EEEEEN 890

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 49.2 bits (117), Expect = 8e-07
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 18/94 (19%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEE-------EEKKEEDEIEKEEG------ 217
           E E +  ++ E E   E +    +   E  E+E       E K++E  ++   G      
Sbjct: 804 EGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDS 863

Query: 218 ENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
           E EEEEEEE  ++++ EEEEEEEE     EE EE
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEE-----EENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 49.2 bits (117), Expect = 9e-07
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEE---EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
           E+    E + ++ E+++E  E+E   E   + K  E+  +     +  + E+EE E EEE
Sbjct: 814 EHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEE 873

Query: 223 EEEEVVKQKKNEEEEEEEEVL 243
           EEEE  ++++ EEEEE EE L
Sbjct: 874 EEEEEEEEEEEEEEEENEEPL 894

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 19/100 (19%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN------ 219
                E E + E   ++E   + E        ++E  E+E   E++ E ++ E       
Sbjct: 797 AEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGG 856

Query: 220 --------EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
                   EEEEEEE  ++++ EEEEEEEE     EEE E
Sbjct: 857 GSDGGDSEEEEEEEEEEEEEEEEEEEEEEE-----EEENE 891

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 26/78 (33%), Positives = 50/78 (64%)

Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
            F      E+E++EED +++E+ E++++  +++ ++ +  +EE+ EEDE   +E + EEE
Sbjct: 313 NFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEE 372

Query: 223 EEEEVVKQKKNEEEEEEE 240
           EEE+  K+KK+ E    E
Sbjct: 373 EEEKEKKKKKSAESTRSE 390

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 28/82 (34%), Positives = 51/82 (62%)

Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
           A EE  K  +E E+E  E   E+++ + +  ++EE   ++ + +EK E E E++E+E   
Sbjct: 62  AKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQ 121

Query: 229 KQKKNEEEEEEEEVLIKLEEEE 250
           KQ++ E++EEE E LI+ + +E
Sbjct: 122 KQQELEKKEEELEELIEEQLQE 143

Length = 520

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 23/62 (37%), Positives = 44/62 (70%)

Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
            + I  + EKK E+E +E++ +     K+++ +EEE+E++E+++E+E E+ E E EEEEE
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471

Query: 225 EE 226
           ++
Sbjct: 472 KK 473

Length = 482

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 46.5 bits (110), Expect = 7e-06
 Identities = 28/83 (33%), Positives = 40/83 (48%)

Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
           GE   + + E E E   E +E   K   E EE E E + E E  ++EGE E  EE E V+
Sbjct: 683 GEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVE 742

Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
            +   E E + EV  + + +E  
Sbjct: 743 DEGEGEAEGKHEVETEGDRKETE 765

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 158 SPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
           S       E      E++   E + E  ++E+ V      +  + EEE++EE+E E+EE 
Sbjct: 819 SETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEE 878

Query: 218 ENEEEEEEEVVKQKKNEEEEE 238
           E EEEEEEE       EE EE
Sbjct: 879 EEEEEEEEE-------EENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 29/81 (35%), Positives = 51/81 (62%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           E+ K+  D++++E   ++++       EE+EEEEE   +DE E+++ ++ EEEEE+V   
Sbjct: 293 EDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLS 352

Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
            + E+EE+E+      EEEEE
Sbjct: 353 DEEEDEEDEDSDDEDDEEEEE 373

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 30/84 (35%), Positives = 46/84 (54%)

Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
              EE++  +E +  E EE+EEV      E   E  E++EE+    ++GE+  + E E +
Sbjct: 174 VDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERI 233

Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
            +K+ EEEE EEEV+   E E E 
Sbjct: 234 DKKQGEEEEMEEEVINLFEIEWEE 257

Length = 279

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 28/69 (40%), Positives = 43/69 (62%)

Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
           ++ EE+E  EEE EEEEE ++++ + EEEE E+++EE+E+E + G  EE E         
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDG 496

Query: 233 NEEEEEEEE 241
            E EE+ E 
Sbjct: 497 EEPEEDAER 505

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 4/70 (5%)

Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
           +E +EE+ +EEEE EEEEE ++    E+E EEEE ++E+E E+ E +N  EEE E   + 
Sbjct: 437 QESEEEESVEEEEEEEEEEEEE----EQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEG 492

Query: 232 KNEEEEEEEE 241
             + EE EE+
Sbjct: 493 DGDGEEPEED 502

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 169  AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
            A E +K EE +I+ EE ++ EE K+K  + +++E EEKK+ +E++K E EN+ +  EE  
Sbjct: 1609 AEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE-- 1666

Query: 229  KQKKNEEEEEEEEVLIKLEEEEE 251
              KK EE++++ E   K EE+E+
Sbjct: 1667 -AKKAEEDKKKAEEAKKAEEDEK 1688

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEE----EEEEKKEEDEIEKEEGENEEEEEEE 226
             EEKK+ +E+++ E E + +  ++  K EE+    EE +K EEDE +  E   +E EE +
Sbjct: 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702

Query: 227  VVKQKKNEEEEEEEEVLIKLEEEEEN 252
              ++ K +E EE+++     + EEEN
Sbjct: 1703 KAEELKKKEAEEKKKAEELKKAEEEN 1728

Length = 2084

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 13/65 (20%), Positives = 31/65 (47%)

Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
            EE + +E+E EE+   + ++ + E+ EEE  +  ++   E   +   + E    ++   
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESAS 426

Query: 235 EEEEE 239
           + + E
Sbjct: 427 DSDSE 431

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 12/79 (15%)

Query: 94  EVIQNKIENVELPEKVDIIVSEWMGFY----LLHESMIDSVIFARDKFLKPEGVMYPYKC 149
            +I + +   + PEK DI+VSE +G +    L  E + D       +FLKP+G+  P   
Sbjct: 244 TIISSDMREWKGPEKADILVSELLGSFGDNELSPECL-DGA----QRFLKPDGISIPQSY 298

Query: 150 ILHSAPSYSPEIFKFWENI 168
             + AP  SP   K ++ +
Sbjct: 299 TSYLAPISSP---KLYQKV 314

The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes. Length = 445

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 15/73 (20%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQ-KKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
            +++G++ ++   E  ++  +  +++ + K   +  EE E K +E+++++EE E +++E+
Sbjct: 360 TDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQ 419

Query: 225 EEVVKQKKNEEEE 237
            +  K+K+ ++E 
Sbjct: 420 ADEDKEKRQKDER 432

Length = 434

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 7/116 (6%)

Query: 128 DSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEI----EEE 183
           D++   +D  +K +    P+     S    S  I  F+  I G+ E  + D I       
Sbjct: 79  DAIRMGKDTSVKIKQRTCPFHKEGSSFEMGSKNITCFYP-IHGKAEIGDLDMIIIKRRRA 137

Query: 184 ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
            +  EE++  + N   ++++E++ E+D+ E+++ E EEEEEE  +K   +E+EE+E
Sbjct: 138 RHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE--IKGFDDEDEEDE 191

Length = 2849

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 32/66 (48%), Positives = 41/66 (62%)

Query: 187 EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKL 246
           +E E ++   +EEEEEEEE++EE E E+EEGE+EEEEEE        EE E   E     
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDG 496

Query: 247 EEEEEN 252
           EE EE+
Sbjct: 497 EEPEED 502

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 15/66 (22%), Positives = 33/66 (50%)

Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
           + +E++E+E+EEEE+   +  +EE E+ EE+  +   +     + +   +   K  K   
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425

Query: 236 EEEEEE 241
            + + E
Sbjct: 426 SDSDSE 431

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 20/69 (28%), Positives = 36/69 (52%)

Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
           W      E+    D     E E+    +  + +E+EEEEEE+ E++   KE  ++EE EE
Sbjct: 361 WTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEE 420

Query: 225 EEVVKQKKN 233
           ++V  + ++
Sbjct: 421 DDVESKYED 429

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
            EE  +EE+E EEEE EEE+        E EEEE E +EE+E  + +  +EEE E     
Sbjct: 441 EEESVEEEEEEEEEEEEEEQ--------ESEEEEGEDEEEEEEVEADNGSEEEMEGSSEG 492

Query: 230 QKKNEEEEEEEEV 242
               EE EE+ E 
Sbjct: 493 DGDGEEPEEDAER 505

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 170 GEEEKKEEDEIEEEENEEE-EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
            + E++ E EIE +E + + E   ++   E E E E  ++E EIE  E   E E+E E  
Sbjct: 689 RKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGE 748

Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
            + K+E E E +    + E E E
Sbjct: 749 AEGKHEVETEGDRKETEHEGETE 771

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE-EEEEVV 228
           GE E  EE E  E+E E E E K +   E + +E E + E E E +E E+E E +  E  
Sbjct: 730 GEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDG 789

Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
           + K +E  E + E   + E  E+
Sbjct: 790 EMKGDEGAEGKVEHEGETEAGEK 812

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEE---EEEEKKEEDEIEKEEGENEEEEEE-- 225
            EE+KK+ +E ++ E +E++  +  K + EE    EE +KKE +E +K E   + EEE   
Sbjct: 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730

Query: 226  EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
            +  + KK  EE++++    K +EEE+ 
Sbjct: 1731 KAEEAKKEAEEDKKKAEEAKKDEEEKK 1757

Length = 2084

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 23/87 (26%), Positives = 51/87 (58%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           +    E +KKE ++  E +++++EE + +  ++E+ ++E +  + E +KE   ++ E+EE
Sbjct: 77  KWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEE 136

Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
           E  +  K  +E+ +EE+  + EEE   
Sbjct: 137 EKDEAAKKAKEDSDEELSEEDEEEAAE 163

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 19/80 (23%), Positives = 41/80 (51%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           + E+ E+    E+  ++E E +    K  ++ E+  K+ +E +K+  E + ++  E   +
Sbjct: 76  QAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAK 135

Query: 231 KKNEEEEEEEEVLIKLEEEE 250
            + E E++ +E   K  EEE
Sbjct: 136 AEAEAEKKAKEEAKKQAEEE 155

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 7/47 (14%)

Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
           G+ E++EE+E EEEE EEEEE       EEEEEEEE +E   +E  E
Sbjct: 861 GDSEEEEEEEEEEEEEEEEEE-------EEEEEEEENEEPLSLEWPE 900

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ- 230
           +E+++ +E+++++  E+E +KQ + KE    +E+KK+ +E  K+    +++ EE   K  
Sbjct: 84  KEQQQAEELQQKQAAEQERLKQLE-KERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAA 142

Query: 231 ----KKNEEEEEEEEVLIKLEEEE 250
                K E E +      K    E
Sbjct: 143 AAAKAKAEAEAKRAAAAAKKAAAE 166

Length = 387

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 3/62 (4%)

Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
           +++   EEEE++ +   +E +EE +EKKEE + E+ E +  +   EE   Q+K EE+E +
Sbjct: 261 VDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEE---QRKLEEKERK 317

Query: 240 EE 241
           ++
Sbjct: 318 KQ 319

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 24/70 (34%), Positives = 42/70 (60%)

Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
           E KK +D+   E  E +EE K+  N E++E++ + ++EDE  +EE E E+EE  +  +++
Sbjct: 50  EAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109

Query: 232 KNEEEEEEEE 241
             E+ E   E
Sbjct: 110 TEEKTESNVE 119

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
            ++E  E +E++EEE E      ++   + E+E+EE +EE+E E EE  ++E E+E   K
Sbjct: 55  DDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE-SSDENEKETEEK 113

Query: 230 QKKNEEEEEEE 240
            + N E+E   
Sbjct: 114 TESNVEKEITN 124

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 19/76 (25%), Positives = 33/76 (43%)

Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
             E+ E   E  +E+++    E+  E EE+K E +  KEE +  + E + + +     E 
Sbjct: 1   LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60

Query: 237 EEEEEVLIKLEEEEEN 252
           +          EEEE 
Sbjct: 61  KPAASGEGGGGEEEEE 76

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 26/81 (32%), Positives = 40/81 (49%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           E E + E E E +   E E  +++   E E E E K++EDE E + GE+ E + +E  + 
Sbjct: 740 EVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEG 799

Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
           K   E E E     + E + E
Sbjct: 800 KVEHEGETEAGEKDEHEGQSE 820

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
           K E+   E E+    E+ +QK+ ++    E+  K+ ++  K+  E +++ EE   KQ   
Sbjct: 72  KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131

Query: 234 EEEEEEEEVLIKLEEE 249
            + + E E   K +EE
Sbjct: 132 AKAKAEAEAEKKAKEE 147

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE-EDEIEKEEGENEEEEEEEVVK 229
           E   +   E+ +   +E+    +++  E +  +EE  + + EI++ E   +E E +    
Sbjct: 6   EALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAAS 65

Query: 230 QKKNEEEEEEEE 241
            +    EEEEEE
Sbjct: 66  GEGGGGEEEEEE 77

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 20/83 (24%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 171 EEEKKEEDEIEEE---ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
            E KK++ E+ EE     +E EE ++ K K+++ ++++ K++D+ + ++ +  E+++E+ 
Sbjct: 58  TEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKE 117

Query: 228 VKQKKNEEEEEEEEVLIKLEEEE 250
            + K  +  +   E L  L E +
Sbjct: 118 AEDKLEDLTKSYSETLSTLSELK 140

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           +E ++E   I EE  +E E +K++   E +EE  + + E E E  E  NE ++ E+ + Q
Sbjct: 34  KEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQ 93

Query: 231 KKNEEEEEEEEVLIKLEEE 249
           K+ E  + + E+L K EEE
Sbjct: 94  KE-ENLDRKLELLEKREEE 111

Length = 520

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 23/75 (30%), Positives = 40/75 (53%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           +    ++   +E    EE  EEE+E    ++KE++ + E++ EE E E EE + E  +E 
Sbjct: 47  DEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDEN 106

Query: 226 EVVKQKKNEEEEEEE 240
           E   ++K E   E+E
Sbjct: 107 EKETEEKTESNVEKE 121

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
           +E  E +E EEE + E E   + K   ++E+E   +E+  +  EE E+ ++ E+    + 
Sbjct: 227 KETSETEEREEETDVEIETTSETK-GTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEI 285

Query: 232 KNEEEEEE 239
             E+++EE
Sbjct: 286 LKEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
           E+  F   I  +   +    +       EEE++     ++  ++ +K  E   +K E E 
Sbjct: 369 EVLPFLSIIF-KHNPELAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEK 427

Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
           +E++++    +KK EEEEEE+E   + +EEEE
Sbjct: 428 KEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459

Length = 482

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 169  AGEEEKKEEDEIE--EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
            A E +KKE +E +  EE  + EEE K K  + ++E EE+KK+ +E +K+E E ++    +
Sbjct: 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763

Query: 227  VVKQKKNEEEEEEEEVLIKLEEEEEN 252
              ++KK EE  +E+E +I+ E +EE+
Sbjct: 1764 KEEEKKAEEIRKEKEAVIEEELDEED 1789

Length = 2084

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 22/76 (28%), Positives = 41/76 (53%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           E  A + + +E  EIEE + EE+E    +  +++ + E+E +E +E  +EE E   +E E
Sbjct: 48  EQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENE 107

Query: 226 EVVKQKKNEEEEEEEE 241
           +  ++K     E+E  
Sbjct: 108 KETEEKTESNVEKEIT 123

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 16/71 (22%), Positives = 45/71 (63%)

Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
           D    E  ++++E+ ++  K ++E EE++K + + +K + + +++++++  K+    E++
Sbjct: 54  DAEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKK 113

Query: 238 EEEEVLIKLEE 248
           +E+E   KLE+
Sbjct: 114 DEKEAEDKLED 124

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEE------EEEEKKEEDEIEKEEGENEEEEEE 225
           EE++EE ++E E   E +  KQ++    EE      EE+E  ++ E   +    +E+++E
Sbjct: 233 EEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDE 292

Query: 226 EV 227
           E+
Sbjct: 293 EL 294

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 8/54 (14%)

Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
           G + ++EE+E EEEE EEEEE        EEEEEEE++ E+ +  E  E  +++
Sbjct: 860 GGDSEEEEEEEEEEEEEEEEE--------EEEEEEEEENEEPLSLEWPETRQKQ 905

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
           GE    E D+  E  + E+EE K +  K+ +E+ +E+  E++ E+   E E E E+E
Sbjct: 116 GEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 18/73 (24%), Positives = 27/73 (36%)

Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
            G E K     +EEEE  +EE  ++ + + + E EE    E E E +         EE  
Sbjct: 27  LGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAA 86

Query: 229 KQKKNEEEEEEEE 241
           +     E      
Sbjct: 87  EAAAAAEAAARPA 99

Length = 746

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 27/80 (33%), Positives = 42/80 (52%)

Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
           E K+ + + E E  E E E + +    E+E E E  EE E  ++EGE E E + EV  + 
Sbjct: 700 EAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEG 759

Query: 232 KNEEEEEEEEVLIKLEEEEE 251
             +E E E E   + +E+E+
Sbjct: 760 DRKETEHEGETEAEGKEDED 779

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 11/97 (11%)

Query: 166  ENIAGEEEKKEEDE---------IEEEENEEEEEVK--QKKNKEEEEEEEEKKEEDEIEK 214
              I  EE KK E+E          E EE ++ EE+K  +++NK +  EE +K EED+ + 
Sbjct: 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677

Query: 215  EEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
            EE +  EE+E++  +  K E EE ++   +K +E EE
Sbjct: 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714

Length = 2084

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 24/83 (28%), Positives = 47/83 (56%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           + +  +++  EE+E E EE+E+ ++  +  + E ++E E    EDE EK+E   + +E+ 
Sbjct: 90  QGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDS 149

Query: 226 EVVKQKKNEEEEEEEEVLIKLEE 248
           +    +++EEE  EEE     +E
Sbjct: 150 DEELSEEDEEEAAEEEEAEAEKE 172

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
              +  +E+ + +E++  EE + KQ   +E  ++ E+++   + +K++ E   ++     
Sbjct: 72  KSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAAL-- 129

Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
           KQK+ EE   +     K + E E
Sbjct: 130 KQKQAEEAAAKAAAAAKAKAEAE 152

Length = 387

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 26/62 (41%), Positives = 43/62 (69%)

Query: 184 ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVL 243
           E E E+EV  ++ +EE+EE++E++E+   ++EE + EEE+EE+  K KK +E   E E+L
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELL 87

Query: 244 IK 245
            K
Sbjct: 88  NK 89

Length = 529

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           E  +K E+E+E++E E E++ ++ + KEEE EE  +++  E+E+  G   EE +E ++++
Sbjct: 103 ELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEK 162

Query: 231 KKNEEEEEEEEVLIKLEEEE 250
            + EE   E  VLIK  EEE
Sbjct: 163 VE-EEARHEAAVLIKEIEEE 181

Length = 520

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 3/84 (3%)

Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEE---EEEKKEEDEIEKEEGENEEEEEEEVV 228
            ++   DE E ++++++E  + ++ KEEE+E    E+K+++ + EKE+ E+EEE EEE  
Sbjct: 41  SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDE 100

Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
           +     E+E EE+    +E+E  N
Sbjct: 101 ESSDENEKETEEKTESNVEKEITN 124

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 23/78 (29%), Positives = 45/78 (57%)

Query: 164 FWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
           F+ +   ++   +E E ++ +++E  E+++ K +E+E    E KE+    ++E E  EEE
Sbjct: 35  FFPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEE 94

Query: 224 EEEVVKQKKNEEEEEEEE 241
            EE  ++  +E E+E EE
Sbjct: 95  NEEEDEESSDENEKETEE 112

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
            +E+E  EEE+ +E E +     + E +E++K+E  + + E+ E  + E
Sbjct: 95  DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEK-EKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 31/85 (36%), Positives = 59/85 (69%), Gaps = 2/85 (2%)

Query: 169  AGEEEKKEEDEI--EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
            A E+EKK  + +  E EE ++ EE+K+K+ +E+++ EE KK E+E + +  E ++E EE+
Sbjct: 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742

Query: 227  VVKQKKNEEEEEEEEVLIKLEEEEE 251
              K ++ +++EEE++ +  L++EEE
Sbjct: 1743 KKKAEEAKKDEEEKKKIAHLKKEEE 1767

Length = 2084

>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 171 EEEKKEEDEIEEEENE--EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
           E+ K    E +EE N   E+    +K+ +++ E  E+  +E E  K+E E E EE +E  
Sbjct: 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERE 559

Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
           + KK E E+E +E L  L++E E+
Sbjct: 560 RNKKLELEKEAQEALKALKKEVES 583

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function [DNA metabolism, Other]. Length = 771

>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 16/72 (22%), Positives = 38/72 (52%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
                EE+++E + +      + ++ +     E+E+EE++++ E   + E  + E+   +
Sbjct: 7   TQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLK 66

Query: 226 EVVKQKKNEEEE 237
           E+ KQKK E ++
Sbjct: 67  ELKKQKKQEIQK 78

Length = 1033

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEE-EKKEEDEIEKEEG----ENEEEE 223
           A EE  K   E+E E  E   E+++ + +  + EE  ++K E   +KEE     E E   
Sbjct: 56  AKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSN 115

Query: 224 EEEVVKQKKNEEEEEEEEVLIKLEE 248
           +E+ + +K+ E EE   E   +LE 
Sbjct: 116 KEKNLDEKEEELEELIAEQREELER 140

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEED---EIEKEEGENEEEEEEEVVKQKKNEE 235
            +E       EEV++ + + +  EE  K  E    E+E+   + EE   E   + +  E+
Sbjct: 75  GLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLED 134

Query: 236 EEEEEEVLIKLEEEEEN 252
             EE E L  L+ +   
Sbjct: 135 LLEELEPLAYLDFDLSL 151

Length = 660

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 18/74 (24%), Positives = 39/74 (52%)

Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
             + E+ EE++ EEE    ++  K KK K ++   ++   +   + ++ + + E+   +V
Sbjct: 317 DEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLV 376

Query: 229 KQKKNEEEEEEEEV 242
             KK +E ++EE V
Sbjct: 377 TAKKQKEPKKEEPV 390

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 5/79 (6%)

Query: 169  AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEK---KEEDEIEKEEG--ENEEEE 223
            A +E K+E D  ++E  ++E+ +++    +E+ ++++     E+DE   E+G  EN +E 
Sbjct: 4015 AADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQEN 4074

Query: 224  EEEVVKQKKNEEEEEEEEV 242
            EE      K++EE E+ EV
Sbjct: 4075 EESTEDGVKSDEELEQGEV 4093

Length = 4600

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 20/83 (24%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 171 EEEKKEEDEIEEEENEE--EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
           + +KKEE   EE + ++  E+E  ++  KE  + +E++K+ +E EK+    ++++EE+  
Sbjct: 80  QRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQAR 139

Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
           K    ++++ E        E  +
Sbjct: 140 KAAAEQKKKAEAAKAKAAAEAAK 162

Length = 387

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKE------EEEEEEEKKEEDEIEKEEGENEEEEEEE 226
           E+  +D IEE+ +EE+ +  Q  N E      EE E  ++ EEDE E  +GE EE E + 
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDA 279

Query: 227 VVKQKKNEEEEEEE 240
               + +E +E +E
Sbjct: 280 AEASEDSESDESDE 293

Length = 620

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 11/68 (16%)

Query: 169 AGEEEKKEEDEIE----EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
           A ++EK  +        + E EEEEE       EEEEEEEE++EE+E E+EE E     E
Sbjct: 845 AKQDEKGVDGGGGSDGGDSEEEEEEE-------EEEEEEEEEEEEEEEEEEENEEPLSLE 897

Query: 225 EEVVKQKK 232
               +QK+
Sbjct: 898 WPETRQKQ 905

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           E    +++     + EE+E EEE+ V    + E+EE++++  EE+E + +  + EE+EE+
Sbjct: 305 EFEPDDDDNFGLGQGEEDEEEEEDGV----DDEDEEDDDDDLEEEEEDVDLSDEEEDEED 360

Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
           E    + +EEEEEEE+   K +  E 
Sbjct: 361 EDSDDEDDEEEEEEEKEKKKKKSAES 386

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 162 FKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE---EGE 218
               E+   E  ++EE+E EEEE EE+E  +++   EEEEEE E     E E E   EG+
Sbjct: 434 MASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGD 493

Query: 219 NEEEEEEEVVKQKKNEEEEEEE 240
            + EE EE  +++ +E      
Sbjct: 494 GDGEEPEEDAERRNSEMAGISR 515

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 166 ENIAGEEEKKEEDE----IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
           +  A E+E+ ++ E      +E+ ++ EE  ++   ++++ EE   +     K + E E 
Sbjct: 94  QKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEA 153

Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
           +      K+   E +++ E    K    E
Sbjct: 154 KRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182

Length = 387

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
           E    D+ EEE  EE  +  ++++  E + E ++K++ E+ K + E E+ + E    + 
Sbjct: 90  ELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
           EEEE EEE   + ++    E + E K+++     +    +E+ + E  K K 
Sbjct: 97  EEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 19/99 (19%), Positives = 51/99 (51%)

Query: 153  SAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI 212
            S P    E     E++  +E++ +  +  + E+ + E   + K + + E++E  ++ED +
Sbjct: 3978 SQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPL 4037

Query: 213  EKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
            E+    +E+ ++++     +++E+  E+     ++E EE
Sbjct: 4038 EENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEE 4076

Length = 4600

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 26/72 (36%), Positives = 41/72 (56%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           E+E K   E  + E E EE+ K+K+ + ++  E+E ++E+     E   EEEE EE    
Sbjct: 271 EDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPP 330

Query: 231 KKNEEEEEEEEV 242
              ++EEE+EEV
Sbjct: 331 PLPKKEEEKEEV 342

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKK--NKEEEEEEEEKKEEDEIEK-EEGENEEEEEEEV 227
            E++  E    +E+ +E+E     +  + EEE EE+EK++   ++K  E E+E+EE E V
Sbjct: 255 LEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIV 314

Query: 228 VKQKKNEEEEEEEEVLIKLEEEEE 251
            +    EEE EE E     ++EEE
Sbjct: 315 PESPVEEEESEEPEPPPLPKKEEE 338

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413)

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
           +I +F + +   E+ K   + +E          +K +K  E      +E+    ++  E+
Sbjct: 33  DILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAES 92

Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIK 245
                 +        EEEEE E    
Sbjct: 93  TRSSHPKSKAPSTESEEEEEPEETPD 118

This is a family of proteins conserved in fungi. The function is not known. Length = 436

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 10/69 (14%), Positives = 42/69 (60%)

Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
           +   + D+ ++++++++ +     + +++E+++E  ++D+++ E+ E +E +E E +   
Sbjct: 125 DVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184

Query: 232 KNEEEEEEE 240
            +   +E++
Sbjct: 185 DDFVWDEDD 193

Length = 509

>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
            K    + EEEE  E    +  +N        EKK  DE+++E  E E++   E  ++K+
Sbjct: 15  PKPPSPKEEEEEALELAIQEAHEN------ALEKKLLDELDEELDEEEDDRFLEEYRRKR 68

Query: 233 NEEEEEEEE 241
             E +   E
Sbjct: 69  LAEMKALAE 77

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Length = 192

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 18/71 (25%), Positives = 33/71 (46%)

Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
             E+ K  E   + EE E  +   +++ + E+ E  E+           E+E E+E+E+ 
Sbjct: 379 EAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELE 438

Query: 229 KQKKNEEEEEE 239
           + +  EEEE  
Sbjct: 439 EAQPEEEEEAR 449

Length = 449

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 19/71 (26%), Positives = 35/71 (49%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           E E  +  E+  +  EEE   ++ + + E E+ E  +E+  + +     E+E E+E   +
Sbjct: 379 EAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELE 438

Query: 231 KKNEEEEEEEE 241
           +   EEEEE  
Sbjct: 439 EAQPEEEEEAR 449

Length = 449

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 169 AGEEEKKEEDEIEEEENEE--EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
              E+ K  + I + E EE  + E +++   E+ E  EE     E+     +  E+E+E 
Sbjct: 378 QEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDEL 437

Query: 227 VVKQKKNEEEEE 238
              Q + EEE  
Sbjct: 438 EEAQPEEEEEAR 449

Length = 449

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 32/82 (39%), Positives = 49/82 (59%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           EEEK    + EEEE + E  +K+K+  EEEE+ E+ K E+E E++    EEE      + 
Sbjct: 752 EEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEEL 811

Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
           K+  E  EEE++LI+ EE+ + 
Sbjct: 812 KEEAELLEEEQLLIEQEEKIKE 833

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG-ENEEEEEEEVVK 229
            ++ K E+  E+   E E + + K  +E+ E EE +KEE   + EE  E + EE ++   
Sbjct: 5   CKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENN 64

Query: 230 QKKNEEEEEEEEV 242
           + K E ++ E E+
Sbjct: 65  KLKEENKKLENEL 77

Length = 211

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 31/82 (37%), Positives = 43/82 (52%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           EE K E +E+ EE  E +EE+ + K + EE E E     + +E+ E E EE EE     +
Sbjct: 270 EELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELK 329

Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
           +K E  +EE E    L EE E 
Sbjct: 330 EKIEALKEELEERETLLEELEQ 351

Length = 1163

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 16/55 (29%), Positives = 42/55 (76%)

Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
             +EE++I+E+ +  E+++K+ + ++ +EE+E+ +EE+E E+EE E+ ++++++ 
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDD 196

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 159 PEIFKFWENIAGEEEKKEEDEIEEEENEEEEEV----KQKKNKEEEEEEEEKKEEDEIEK 214
           PE  +       +  K+E      E  E EEE+    + K    E + + +K  +  I K
Sbjct: 833 PEELELINEE-QKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKKLNKLIIAK 891

Query: 215 E------EGENEEEEEEEVVKQKKNEEEEEEEE 241
           +         +E +++E+  K+KK + E+ +EE
Sbjct: 892 DVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEE 924

Length = 925

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE--IEKEEGENE-EEEEEE 226
            E E  EE   E E+  E E   + +++ E   E + ++E E  IE +E +++ E E EE
Sbjct: 655 AEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEE 714

Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
           V  + + E E  E+E  I+  EE E
Sbjct: 715 VEHEGETEAEGTEDEGEIETGEEGE 739

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE----EGENEE 221
           E  A E E + E E E  E+E E E  ++  + E+E E E + + E+E E    E E+E 
Sbjct: 709 ETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEG 768

Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
           E E E  + +   E +  E+  +K +E  E
Sbjct: 769 ETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
           WE    E+   E + I+ E ++E E         E+EEE+++  +   E  + E  EE+E
Sbjct: 104 WEVEEDEDSDDEGEWIDVESDKEIESSD-----SEDEEEKDEAAKKAKEDSDEELSEEDE 158

Query: 225 EEVVKQKKNEEEEE 238
           EE  ++++ E E+E
Sbjct: 159 EEAAEEEEAEAEKE 172

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
           + + ++EDE  EEENEEE+E    +N++E EE+ E   E EI     +
Sbjct: 81  KGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWK 128

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 17/67 (25%), Positives = 30/67 (44%)

Query: 167  NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
            ++A ++EK  ED  EE   E EE  +     +EE E+ E  E+  I+     + +     
Sbjct: 4054 DLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFAS 4113

Query: 227  VVKQKKN 233
                ++N
Sbjct: 4114 AEADEEN 4120

Length = 4600

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 13/91 (14%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKK-------------NKEEEEEEEEKKEEDEIEKEEG 217
            +EKKE+ E  E   +EE E +  K               +E+E+E+E K   E    E 
Sbjct: 226 TKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEE 285

Query: 218 ENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
           E EE+E+E+  + KK  E+E+E+E +  + E
Sbjct: 286 ETEEKEKEKRKRLKKMMEDEDEDEEMEIVPE 316

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 17/71 (23%), Positives = 33/71 (46%)

Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
           +E E+ +  E+  ++ +EE  + E ++  +  + E  E +    E     +   E+E+E 
Sbjct: 378 QEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDEL 437

Query: 241 EVLIKLEEEEE 251
           E     EEEE 
Sbjct: 438 EEAQPEEEEEA 448

Length = 449

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 25/87 (28%), Positives = 41/87 (47%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           E +    E+ +E     +E  EE E   ++ ++   E EE KEE E +      E EE  
Sbjct: 319 EELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELF 378

Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
           E ++++  E E E  E+  +LEE +  
Sbjct: 379 EALREELAELEAELAEIRNELEELKRE 405

Length = 1163

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 20/76 (26%), Positives = 44/76 (57%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           E    E+ K+E+ + +E+  EE ++ K K+  +E+   +EK++E E + EE  + EEE++
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165

Query: 226 EVVKQKKNEEEEEEEE 241
               + K+  ++  ++
Sbjct: 166 RERVRAKSRPKKPPKK 181

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 15/90 (16%)

Query: 171 EEEKKEE-------DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK------EEG 217
           E E+KEE        +I E+  E+ EEV +    E + EEEE+K+ + +EK      +  
Sbjct: 97  EREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQMEILEKALKSYLKIV 156

Query: 218 ENEEEEEEEVVK--QKKNEEEEEEEEVLIK 245
           + E +  + + K  QK++EE  ++E  +I+
Sbjct: 157 KEENKSLQRLAKALQKESEERTQDETKMIE 186

cryoelectron microscopy indicates that VP5 is a trimer implying that there are 360 copies of VP5 per virion. Length = 507

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 153 SAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI 212
           +A S      +  E+    EE  E D IE E+  +        ++ + E      EE   
Sbjct: 345 AAESVVQVADRDGESTPAVEETSEAD-IEREQPGDLAGQAPAAHQVDAEAASAAPEEPAA 403

Query: 213 EKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
              E  +E E E         +  + +E  
Sbjct: 404 LASEAHDETEPEVPEKAAPIPDPAKPDELA 433

Length = 460

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 31/77 (40%), Positives = 44/77 (57%)

Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
           EE+E EE +  EE+   ++K +EE EEE EKK+E+E  KE  E   +E+EE  K K +  
Sbjct: 24  EEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFV 83

Query: 236 EEEEEEVLIKLEEEEEN 252
            EEE    +  +EE   
Sbjct: 84  VEEEGTDKLSADEESNE 100

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 37.8 bits (87), Expect = 0.004
 Identities = 27/85 (31%), Positives = 45/85 (52%)

Query: 166  ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
            E     EE K+ +E +     + EE K+ +    EE  +  +EE +++ EE +  EE + 
Sbjct: 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620

Query: 226  EVVKQKKNEEEEEEEEVLIKLEEEE 250
            +  + KK EEE+++ E L K E EE
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEE 1645

Length = 2084

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
            EV +K +K  EEEEE+  +  E E++E E +E++EE+  ++++ +  +   E   KLEE
Sbjct: 255 PEVLRKVDKTREEEEEKILKAAEEERQE-EAQEKKEEKKKEEREAKLAKLSPEEQRKLEE 313

Query: 249 EE 250
           +E
Sbjct: 314 KE 315

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
           K K+  E EE EEE   E E   E    ++E+E    +      EE+E+
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKED 273

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 24/62 (38%), Positives = 41/62 (66%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           E EK+  DE EEEE EE++E ++K   +EEE +EE+++E++ +K +   E   E E++ +
Sbjct: 30  EVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNK 89

Query: 231 KK 232
            K
Sbjct: 90  TK 91

Length = 529

>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 21/78 (26%), Positives = 45/78 (57%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           EEE+      EEE+ EE E V +    + +++E   ++EDE E+++ E E   + E+ K+
Sbjct: 1   EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKR 60

Query: 231 KKNEEEEEEEEVLIKLEE 248
           +K   +E +++   ++++
Sbjct: 61  EKARLKELKKQKKQEIQK 78

Length = 1033

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 21/81 (25%), Positives = 46/81 (56%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
              KK E + +++E +  EE+K K+  E+E  ++ +KE  + ++++ + EE E++  ++Q
Sbjct: 72  SSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQ 131

Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
           K+ EE+  +     K + E  
Sbjct: 132 KQQEEQARKAAAEQKKKAEAA 152

Length = 387

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 21/108 (19%)

Query: 49  AGKTVLDVGTGTGKSIL--------LQGHGVDHHSFC---TKVHPLDHYAPQYLILEVIQ 97
            G  VLD+G GTG   +         +  GVD         + +      P+   +  +Q
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR---ITFVQ 57

Query: 98  NKI-ENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVM 144
               + ++L E  D +     G  LL   ++D++       LKP G +
Sbjct: 58  GDAPDALDLLEGFDAVFIGGGGGDLLE--LLDALA----SLLKPGGRL 99

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
              EE  E +  +EE  EE  E + K+  E E   +E+K  D++   EG + E   +   
Sbjct: 386 VPVEELLEIEGFDEETVEELRE-RAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAE 444

Query: 229 KQKKNEEEEEEEEV--LIKLEEEEE 251
           K  K  E+  E+ V  LI +E +EE
Sbjct: 445 KGIKTLEDLAEQAVDELIDIEGDEE 469

Length = 470

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 38.2 bits (88), Expect = 0.004
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 155 PSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
            S   E+ K W ++A  + + ++D   +   E EEE+ Q   K   E+ E+++   + E 
Sbjct: 560 ESEFEELKKKWSSLAQLKSRFQKDATLDS-IEGEEELIQDDEKGNFEDLEDEENSSDNEM 618

Query: 215 EE-------GENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
           EE        ENEE  +E   + ++ E   ++EE+    E EE 
Sbjct: 619 EESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEER 662

Length = 1077

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
KOG1499|consensus	346		99.93
KOG1500|consensus	517		99.87
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.66
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.59
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.58
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.54
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.54
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.5
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.48
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.48
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.48
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.47
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.46
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.45
PLN02244	340	tocopherol O-methyltransferase	99.44
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.43
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.43
PRK11207	197	tellurite resistance protein TehB; Provisional	99.43
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.42
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.41
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.41
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.4
KOG1270|consensus	282		99.39
PLN02336	475	phosphoethanolamine N-methyltransferase	99.35
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.35
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.34
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.34
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.33
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.33
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.33
PRK08317	241	hypothetical protein; Provisional	99.33
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.33
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.32
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.3
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.29
PRK12335	287	tellurite resistance protein TehB; Provisional	99.29
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.28
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.28
KOG1540|consensus	296		99.27
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.27
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.26
PRK05785	226	hypothetical protein; Provisional	99.26
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.24
PLN02336	475	phosphoethanolamine N-methyltransferase	99.24
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.24
PRK06922	677	hypothetical protein; Provisional	99.22
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.22
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.22
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.21
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.21
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.2
PLN02490	340	MPBQ/MSBQ methyltransferase	99.19
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.19
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.18
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.18
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.18
KOG4300|consensus	252		99.16
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.15
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.15
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.15
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.14
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.13
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.13
COG4123	248	Predicted O-methyltransferase [General function pr	99.12
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.12
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.11
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.11
PLN03075	296	nicotianamine synthase; Provisional	99.1
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.1
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.1
PRK14967	223	putative methyltransferase; Provisional	99.1
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.1
TIGR00438	188	rrmJ cell division protein FtsJ.	99.08
PRK06202	232	hypothetical protein; Provisional	99.06
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.05
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.05
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.05
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.04
PRK04266	226	fibrillarin; Provisional	99.04
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.03
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.03
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.01
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.01
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.01
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.98
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.98
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.98
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.96
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.94
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.94
TIGR03438	301	probable methyltransferase. This model represents	98.92
PTZ00146	293	fibrillarin; Provisional	98.91
PRK07402	196	precorrin-6B methylase; Provisional	98.91
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.9
PRK14968	188	putative methyltransferase; Provisional	98.89
KOG3045|consensus	325		98.89
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.89
KOG2899|consensus	288		98.88
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.88
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.87
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.86
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.84
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.84
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.84
KOG1271|consensus	227		98.84
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.83
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.82
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.81
PHA03411	279	putative methyltransferase; Provisional	98.81
PRK00811	283	spermidine synthase; Provisional	98.81
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.81
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.81
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.8
PHA03412	241	putative methyltransferase; Provisional	98.79
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.79
KOG2361|consensus	264		98.79
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.78
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.78
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.77
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.77
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.77
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.77
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.77
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.76
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.76
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.74
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.74
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.73
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.73
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.72
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.72
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.72
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.71
KOG1975|consensus	389		98.71
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.71
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.7
PRK04457	262	spermidine synthase; Provisional	98.69
KOG1541|consensus	270		98.68
COG4076	252	Predicted RNA methylase [General function predicti	98.68
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.66
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.65
KOG3010|consensus	261		98.65
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.64
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.63
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.63
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.62
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.6
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.59
PLN02366	308	spermidine synthase	98.57
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.56
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.55
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.54
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.54
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.54
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.53
COG2890	280	HemK Methylase of polypeptide chain release factor	98.52
PRK01581	374	speE spermidine synthase; Validated	98.5
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.49
PRK03612	521	spermidine synthase; Provisional	98.49
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.48
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.47
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.45
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.42
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.41
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.4
COG2521	287	Predicted archaeal methyltransferase [General func	98.38
PRK04148	134	hypothetical protein; Provisional	98.36
PLN02476	278	O-methyltransferase	98.36
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.34
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.33
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.33
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.31
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.31
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.3
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.3
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.3
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.28
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.26
KOG2904|consensus	328		98.26
PLN02672	1082	methionine S-methyltransferase	98.25
COG4122	219	Predicted O-methyltransferase [General function pr	98.21
KOG1501|consensus	636		98.2
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.19
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.17
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.16
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.15
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.14
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.12
KOG0822|consensus	649		98.1
COG3897	218	Predicted methyltransferase [General function pred	98.06
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.06
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.05
PLN02823	336	spermine synthase	98.03
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.03
KOG2940|consensus	325		98.02
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.01
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.01
KOG1331|consensus	293		98.01
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.0
KOG3178|consensus	342		97.99
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.96
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.95
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.92
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.92
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.9
KOG3420|consensus	185		97.9
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.89
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.87
KOG1661|consensus	237		97.87
KOG3191|consensus	209		97.82
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.82
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.73
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.73
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.7
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.69
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.69
KOG1663|consensus	237		97.64
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.62
KOG1269|consensus	364		97.6
PRK00536	262	speE spermidine synthase; Provisional	97.6
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.59
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.58
KOG1709|consensus	271		97.57
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.56
KOG0820|consensus	315		97.55
KOG4589|consensus	232		97.55
COG2520	341	Predicted methyltransferase [General function pred	97.45
PTZ00357	1072	methyltransferase; Provisional	97.4
KOG2915|consensus	314		97.35
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.34
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.29
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.28
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.28
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.26
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.23
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.18
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.16
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.08
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.07
KOG3987|consensus	288		96.91
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.91
KOG3201|consensus	201		96.9
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.88
KOG2187|consensus	534		96.85
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.82
PRK10742	250	putative methyltransferase; Provisional	96.81
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.73
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.73
PF13679	141	Methyltransf_32: Methyltransferase domain	96.67
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.63
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.6
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.54
KOG2352|consensus	482		96.5
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	96.5
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.49
KOG2798|consensus	369		96.41
KOG2920|consensus	282		96.4
COG4798	238	Predicted methyltransferase [General function pred	96.36
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.28
KOG2793|consensus	248		95.98
KOG1596|consensus	317		95.94
KOG2730|consensus	263		95.77
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	95.57
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.47
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.43
KOG1099|consensus	294		95.4
KOG3115|consensus	249		95.35
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	95.26
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	95.0
KOG2671|consensus	421		94.92
PF03269	177	DUF268: Caenorhabditis protein of unknown function	94.79
KOG1122|consensus	460		94.38
COG1255	129	Uncharacterized protein conserved in archaea [Func	94.19
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	94.13
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	93.99
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	93.95
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	93.83
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	93.42
COG2384	226	Predicted SAM-dependent methyltransferase [General	93.39
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	93.31
KOG4058|consensus	199		93.24
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	93.17
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	93.07
KOG2198|consensus	375		93.07
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	92.19
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	92.19
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	92.0
PHA01634	156	hypothetical protein	91.92
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	91.5
KOG1562|consensus	337		91.21
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	90.77
KOG3924|consensus	419		90.48
COG0286	489	HsdM Type I restriction-modification system methyl	90.21
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	90.16
PRK11524	284	putative methyltransferase; Provisional	90.06
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	89.27
KOG1098|consensus	780		89.1
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	88.72
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	87.91
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	86.98
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	86.95
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	86.84
PRK11524	284	putative methyltransferase; Provisional	86.44
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	86.25
COG2933	358	Predicted SAM-dependent methyltransferase [General	84.87
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	84.53
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	84.48
PRK13699	227	putative methylase; Provisional	84.39
KOG1227|consensus	351		83.97
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	83.91
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	83.42
KOG1253|consensus	525		83.19
PRK13699	227	putative methylase; Provisional	82.3
KOG0024|consensus	354		81.59
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	80.83

>KOG1499|consensus

Probab=99.93  E-value=3.6e-26  Score=205.00  Aligned_cols=169  Identities=44%  Similarity=0.740  Sum_probs=158.3

Q ss_pred             CChhhHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEe
Q psy9773           9 HDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAP   88 (252)
Q Consensus         9 ~~~~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gv   88 (252)
                      .+.+.||.+|..+.+|..|++|.+|+.+|+.++..+.....+++|||+|||||  ++        |++++++|+++|+|+
T Consensus        20 ~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtG--IL--------S~F~akAGA~~V~aV   89 (346)
T KOG1499|consen   20 TSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTG--IL--------SMFAAKAGARKVYAV   89 (346)
T ss_pred             chhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCcc--HH--------HHHHHHhCcceEEEE
Confidence            46788999999999999999999999999999999999999999999999999  99        999999999999999


Q ss_pred             eC-----------------CceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          89 QY-----------------LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        89 D~-----------------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |.                 ..|+++++.+.++.+| .++|+|++.||++++..+..+..+|.+.-++|+|||+++++.+.
T Consensus        90 e~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~  169 (346)
T KOG1499|consen   90 EASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRAT  169 (346)
T ss_pred             echHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccce
Confidence            99                 5689999999999888 99999999999999999999999999999999999999999999


Q ss_pred             cccCCCCChhH----HHHhhhhhCCccccchhHHhhhhhhh
Q psy9773         151 LHSAPSYSPEI----FKFWENIAGEEEKKEEDEIEEEENEE  187 (252)
Q Consensus       151 ~~~~~~~~~~~----~~~w~~~~g~~~~~~~~~~~~~~~~~  187 (252)
                      .+.+++....+    ..+|.+++||+|+++.+....+|...
T Consensus       170 l~l~~i~d~~~~~~~i~fW~~Vygfdms~~~~~~~~e~lv~  210 (346)
T KOG1499|consen  170 LYLAAIEDDSYKDDKIGFWDDVYGFDMSCIKKIAIKEPLVD  210 (346)
T ss_pred             EEEEeccCchhhhhhcCccccccccchhhhhhhhhccccee
Confidence            99988888766    56799999999999999988877655

>KOG1500|consensus

Probab=99.87  E-value=1e-21  Score=174.90  Aligned_cols=160  Identities=39%  Similarity=0.635  Sum_probs=148.8

Q ss_pred             CChhhHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEe
Q psy9773           9 HDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAP   88 (252)
Q Consensus         9 ~~~~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gv   88 (252)
                      .+...||..|+.+..+++|++|-+|+..|.+++..++..+.++.|||+|||+|  ++        +++++..|+++|+++
T Consensus       137 sSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSG--IL--------S~FAaqAGA~~vYAv  206 (517)
T KOG1500|consen  137 SSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSG--IL--------SFFAAQAGAKKVYAV  206 (517)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCcc--HH--------HHHHHHhCcceEEEE
Confidence            45667999999999999999999999999999999999999999999999999  99        999999999999999


Q ss_pred             eC-----------------CceEEEEccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773          89 QY-----------------LILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus        89 D~-----------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                      +.                 .+|.++.+.+.++.+|++.|+||+.+|+..+.++..++..+... ++|+|.|.+++....+
T Consensus       207 EAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdi  285 (517)
T KOG1500|consen  207 EASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDI  285 (517)
T ss_pred             ehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccce
Confidence            98                 79999999999999999999999999999999999999988876 9999999999999999


Q ss_pred             ccCCCCChhH-------HHHh--hhhhCCccccchhH
Q psy9773         152 HSAPSYSPEI-------FKFW--ENIAGEEEKKEEDE  179 (252)
Q Consensus       152 ~~~~~~~~~~-------~~~w--~~~~g~~~~~~~~~  179 (252)
                      +.+|+....+       ..+|  .+++|.|+++++..
T Consensus       286 HlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~  322 (517)
T KOG1500|consen  286 HLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGS  322 (517)
T ss_pred             eecccchHHHHHHHHhhhhhhhhhccccccchhhhhh
Confidence            9999988665       6778  68899999988754

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.66  E-value=1e-15  Score=133.08  Aligned_cols=107  Identities=23%  Similarity=0.292  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEE
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEV   95 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~   95 (252)
                      -..|++.+.......+|.+|||||||||  .+        +..+++ .|..+|+|+|+                 .++.|
T Consensus        36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTG--d~--------a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~f  105 (238)
T COG2226          36 HRLWRRALISLLGIKPGDKVLDVACGTG--DM--------ALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEF  105 (238)
T ss_pred             hHHHHHHHHHhhCCCCCCEEEEecCCcc--HH--------HHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEE
Confidence            4556666666556669999999999999  55        666666 44468999999                 33889


Q ss_pred             EEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773          96 IQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus        96 ~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                      +.+|+.++|++ ++||+|.+...   +.+..++..+|++++|+|||||++++...+...
T Consensus       106 v~~dAe~LPf~D~sFD~vt~~fg---lrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~  161 (238)
T COG2226         106 VVGDAENLPFPDNSFDAVTISFG---LRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD  161 (238)
T ss_pred             EEechhhCCCCCCccCEEEeeeh---hhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence            99999999999 89999988555   555589999999999999999999988765443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.59  E-value=8.4e-15  Score=111.93  Aligned_cols=90  Identities=21%  Similarity=0.247  Sum_probs=73.1

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC------------------CceEEEEccc-cccCCCCc
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY------------------LILEVIQNKI-ENVELPEK  108 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~------------------~~i~~~~~d~-~~~~~~~~  108 (252)
                      |+.+|||||||+|  .+        +..+++ .+..+++|+|+                  .+++++++|+ ........
T Consensus         1 p~~~vLDlGcG~G--~~--------~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~   70 (112)
T PF12847_consen    1 PGGRVLDLGCGTG--RL--------SIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEP   70 (112)
T ss_dssp             TTCEEEEETTTTS--HH--------HHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSC
T ss_pred             CCCEEEEEcCcCC--HH--------HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCC
Confidence            5789999999999  66        666666 33467999999                  7999999999 44455578


Q ss_pred             eeEEEecc-cccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         109 VDIIVSEW-MGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       109 fDlIv~~~-~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ||+|++.. .++++.+..+...++..+.+.|+|||+|++..
T Consensus        71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   71 FDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99999987 44444444678899999999999999999875

...

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.58  E-value=4e-15  Score=129.54  Aligned_cols=101  Identities=19%  Similarity=0.241  Sum_probs=68.5

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC-----------------CceEEEE
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY-----------------LILEVIQ   97 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~-----------------~~i~~~~   97 (252)
                      +++.+.......+|.+|||+|||||  .+        +..+++. +. .+|+|+|+                 .++.+++
T Consensus        35 wr~~~~~~~~~~~g~~vLDv~~GtG--~~--------~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~  104 (233)
T PF01209_consen   35 WRRKLIKLLGLRPGDRVLDVACGTG--DV--------TRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQ  104 (233)
T ss_dssp             --SHHHHHHT--S--EEEEET-TTS--HH--------HHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred             HHHHHHhccCCCCCCEEEEeCCChH--HH--------HHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEE
Confidence            3333333345678899999999999  66        6666553 33 48999999                 4799999


Q ss_pred             ccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          98 NKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        98 ~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|+.+++++ ++||+|++.+.++.+   +++..++++++|+|||||++++...+
T Consensus       105 ~da~~lp~~d~sfD~v~~~fglrn~---~d~~~~l~E~~RVLkPGG~l~ile~~  155 (233)
T PF01209_consen  105 GDAEDLPFPDNSFDAVTCSFGLRNF---PDRERALREMYRVLKPGGRLVILEFS  155 (233)
T ss_dssp             -BTTB--S-TT-EEEEEEES-GGG----SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cCHHHhcCCCCceeEEEHHhhHHhh---CCHHHHHHHHHHHcCCCeEEEEeecc
Confidence            999999998 899999996665544   67889999999999999999987654

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.54  E-value=7.9e-14  Score=123.28  Aligned_cols=101  Identities=14%  Similarity=0.081  Sum_probs=79.6

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC--------------------CceE
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY--------------------LILE   94 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~--------------------~~i~   94 (252)
                      +++.+.......++.+|||+|||||  .+        +..+++. +. .+|+|+|+                    .++.
T Consensus        61 ~r~~~~~~~~~~~~~~VLDlGcGtG--~~--------~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~  130 (261)
T PLN02233         61 WKRMAVSWSGAKMGDRVLDLCCGSG--DL--------AFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIE  130 (261)
T ss_pred             HHHHHHHHhCCCCCCEEEEECCcCC--HH--------HHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeE
Confidence            4444443345677899999999999  55        5555553 33 47999999                    1578


Q ss_pred             EEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          95 VIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        95 ~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++++|+.+++++ ++||+|++..+++++   .++..++.++.|+|+|||+|++....
T Consensus       131 ~~~~d~~~lp~~~~sfD~V~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        131 WIEGDATDLPFDDCYFDAITMGYGLRNV---VDRLKAMQEMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             EEEcccccCCCCCCCEeEEEEecccccC---CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            999999999887 789999997776655   67889999999999999999988654

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.54  E-value=3.2e-14  Score=104.60  Aligned_cols=80  Identities=21%  Similarity=0.244  Sum_probs=67.6

Q ss_pred             EEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------CceEEEEccccccCCC-CceeEEEecccc
Q psy9773          54 LDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LILEVIQNKIENVELP-EKVDIIVSEWMG  118 (252)
Q Consensus        54 LDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~  118 (252)
                      ||+|||+|  ..        +..+++.+..+++++|+              .++.+.++|+.+++++ ++||+|++..++
T Consensus         1 LdiG~G~G--~~--------~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~   70 (95)
T PF08241_consen    1 LDIGCGTG--RF--------AAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVL   70 (95)
T ss_dssp             EEET-TTS--HH--------HHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred             CEecCcCC--HH--------HHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccce
Confidence            89999999  66        66677765578999999              4567999999999988 899999998887


Q ss_pred             cccCChhhHHHHHHHHhccccCCeEEEe
Q psy9773         119 FYLLHESMIDSVIFARDKFLKPEGVMYP  146 (252)
Q Consensus       119 ~~l~~~~~~~~~l~~l~~~LkpgG~lv~  146 (252)
                      +++   .++..++.++.|+|||||++++
T Consensus        71 ~~~---~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   71 HHL---EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GGS---SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eec---cCHHHHHHHHHHHcCcCeEEeC
Confidence            777   7899999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.50  E-value=3.3e-14  Score=122.47  Aligned_cols=89  Identities=24%  Similarity=0.322  Sum_probs=76.0

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------C--ceEEEEccccccCCC-Ccee
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------L--ILEVIQNKIENVELP-EKVD  110 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~--~i~~~~~d~~~~~~~-~~fD  110 (252)
                      .+|.+|||+|||-|  .|        +..+|+.| .+|+|+|+              .  .+.+.+..+.++... ++||
T Consensus        58 l~g~~vLDvGCGgG--~L--------se~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FD  126 (243)
T COG2227          58 LPGLRVLDVGCGGG--IL--------SEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFD  126 (243)
T ss_pred             CCCCeEEEecCCcc--Hh--------hHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCcc
Confidence            68999999999999  99        99999999 57999999              2  344667777777655 7999


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|+|.-|   +.|.+++..+++.+.+++||||++++++..
T Consensus       127 vV~cmEV---lEHv~dp~~~~~~c~~lvkP~G~lf~STin  163 (243)
T COG2227         127 VVTCMEV---LEHVPDPESFLRACAKLVKPGGILFLSTIN  163 (243)
T ss_pred             EEEEhhH---HHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence            9999766   455588889999999999999999999876

>TIGR00452 methyltransferase, putative

Probab=99.48  E-value=1.8e-13  Score=123.96  Aligned_cols=96  Identities=15%  Similarity=-0.002  Sum_probs=77.1

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIEN  102 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~  102 (252)
                      +.......++++|||+|||+|  .+        +..++..|+..|+|+|+                  .++.+..+++.+
T Consensus       113 ~l~~l~~~~g~~VLDvGCG~G--~~--------~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~  182 (314)
T TIGR00452       113 VLPHLSPLKGRTILDVGCGSG--YH--------MWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ  182 (314)
T ss_pred             HHHhcCCCCCCEEEEeccCCc--HH--------HHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH
Confidence            333335677899999999999  65        56666777778999997                  246678888888


Q ss_pred             cCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         103 VELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       103 ~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++...+||+|+|..+++|.   .++..+|..++++|+|||.|++...
T Consensus       183 lp~~~~FD~V~s~gvL~H~---~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       183 LHELYAFDTVFSMGVLYHR---KSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             CCCCCCcCEEEEcchhhcc---CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence            8766789999998876665   7788999999999999999998754

Known examples to date are restricted to the proteobacteria.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.48  E-value=2.4e-13  Score=123.67  Aligned_cols=91  Identities=18%  Similarity=0.067  Sum_probs=77.0

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPE  107 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~  107 (252)
                      ....+++|||||||+|  .+        +..++..|+..|+|+|+                  .++.++.+|+.+++.++
T Consensus       119 ~~l~g~~VLDIGCG~G--~~--------~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~  188 (322)
T PRK15068        119 SPLKGRTVLDVGCGNG--YH--------MWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALK  188 (322)
T ss_pred             CCCCCCEEEEeccCCc--HH--------HHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcC
Confidence            3457899999999999  66        67777778778999998                  25889999999988778


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +||+|+|..+++|.   .++..+|..+++.|+|||.|++...
T Consensus       189 ~FD~V~s~~vl~H~---~dp~~~L~~l~~~LkpGG~lvl~~~  227 (322)
T PRK15068        189 AFDTVFSMGVLYHR---RSPLDHLKQLKDQLVPGGELVLETL  227 (322)
T ss_pred             CcCEEEECChhhcc---CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence            89999997776554   6788999999999999999998753

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.48  E-value=2.2e-13  Score=123.80  Aligned_cols=89  Identities=16%  Similarity=0.143  Sum_probs=75.0

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC-Cc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP-EK  108 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~-~~  108 (252)
                      .++.+|||||||+|  .+        +..+++.| .+|+|+|+                  .++.++++++.+++.+ ++
T Consensus       130 ~~g~~ILDIGCG~G--~~--------s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~  198 (322)
T PLN02396        130 FEGLKFIDIGCGGG--LL--------SEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRK  198 (322)
T ss_pred             CCCCEEEEeeCCCC--HH--------HHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCC
Confidence            46779999999999  66        67777776 47999999                  2688999999888765 78


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ||+|+|..+++|+   .++..++..+.++|+|||.+++....
T Consensus       199 FD~Vi~~~vLeHv---~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        199 FDAVLSLEVIEHV---ANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             CCEEEEhhHHHhc---CCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9999997776666   67889999999999999999998754

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.47  E-value=5.1e-13  Score=115.18  Aligned_cols=102  Identities=16%  Similarity=0.164  Sum_probs=78.5

Q ss_pred             HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC-----------------CceEEE
Q psy9773          36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY-----------------LILEVI   96 (252)
Q Consensus        36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~-----------------~~i~~~   96 (252)
                      .++..+.......++.+|||+|||+|  .+        +..+++. ++ .+++|+|+                 .++.++
T Consensus        32 ~~~~~~l~~l~~~~~~~vLDiGcG~G--~~--------~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~  101 (231)
T TIGR02752        32 KWRKDTMKRMNVQAGTSALDVCCGTA--DW--------SIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELV  101 (231)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCcC--HH--------HHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEE
Confidence            34444544456678899999999999  55        5555543 32 47999999                 368899


Q ss_pred             EccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          97 QNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        97 ~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++|+..++++ ++||+|++..+++++   +++..++..+.++|+|||++++....
T Consensus       102 ~~d~~~~~~~~~~fD~V~~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~~~  153 (231)
T TIGR02752       102 HGNAMELPFDDNSFDYVTIGFGLRNV---PDYMQVLREMYRVVKPGGKVVCLETS  153 (231)
T ss_pred             EechhcCCCCCCCccEEEEecccccC---CCHHHHHHHHHHHcCcCeEEEEEECC
Confidence            9999888766 789999987665444   67789999999999999999986643

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.46  E-value=3.7e-13  Score=118.19  Aligned_cols=92  Identities=13%  Similarity=0.087  Sum_probs=75.7

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC----------CceEEEEccccccCCCCceeEEE
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY----------LILEVIQNKIENVELPEKVDIIV  113 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~----------~~i~~~~~d~~~~~~~~~fDlIv  113 (252)
                      ....++.+|||||||+|  .+        +..++... ..+|+|+|+          .++.++++|+.++...++||+|+
T Consensus        25 l~~~~~~~vLDlGcG~G--~~--------~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~   94 (255)
T PRK14103         25 VGAERARRVVDLGCGPG--NL--------TRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVV   94 (255)
T ss_pred             CCCCCCCEEEEEcCCCC--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEE
Confidence            45567899999999999  66        66666542 257999999          56889999998875448899999


Q ss_pred             ecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       114 ~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++.+++++   +++..++.++.++|+|||+|++..+
T Consensus        95 ~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         95 SNAALQWV---PEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             EehhhhhC---CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence            98887776   5778999999999999999998754

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.45  E-value=4.7e-13  Score=108.45  Aligned_cols=90  Identities=28%  Similarity=0.314  Sum_probs=73.6

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHh-hcC-CCcEEEeeC-----------------CceEEEEccccccC--CC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCT-KVH-PLDHYAPQY-----------------LILEVIQNKIENVE--LP  106 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a-~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~--~~  106 (252)
                      ..+.+|||+|||+|  .+        +..++ ..+ ..+++|+|+                 .+++|+++|+.+++  ++
T Consensus         2 ~~~~~iLDlGcG~G--~~--------~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~   71 (152)
T PF13847_consen    2 KSNKKILDLGCGTG--RL--------LIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE   71 (152)
T ss_dssp             TTTSEEEEET-TTS--HH--------HHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS
T ss_pred             CCCCEEEEecCcCc--HH--------HHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC
Confidence            45789999999999  55        55666 332 367999999                 57999999999987  44


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.||+|++..+++++   .++..++..+.++|++||++++....
T Consensus        72 ~~~D~I~~~~~l~~~---~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   72 EKFDIIISNGVLHHF---PDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TTEEEEEEESTGGGT---SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCeeEEEEcCchhhc---cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            789999998776555   77889999999999999999998865

...

>PLN02244 tocopherol O-methyltransferase

Probab=99.44  E-value=1.1e-12  Score=120.29  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=73.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC-Cc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP-EK  108 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~-~~  108 (252)
                      .++.+|||||||+|  .+        +..++.....+|+|+|+                  .++.++++|+.+++++ ++
T Consensus       117 ~~~~~VLDiGCG~G--~~--------~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~  186 (340)
T PLN02244        117 KRPKRIVDVGCGIG--GS--------SRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQ  186 (340)
T ss_pred             CCCCeEEEecCCCC--HH--------HHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCC
Confidence            67789999999999  55        55666542357999999                  3689999999998877 89


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ||+|++..+++++   .+...++.++.++|+|||+|++...
T Consensus       187 FD~V~s~~~~~h~---~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        187 FDLVWSMESGEHM---PDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             ccEEEECCchhcc---CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999997776665   6788999999999999999998753

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.43  E-value=1.9e-12  Score=113.17  Aligned_cols=98  Identities=16%  Similarity=0.163  Sum_probs=76.6

Q ss_pred             HHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCC
Q psy9773          39 AAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELP  106 (252)
Q Consensus        39 ~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~  106 (252)
                      ..+.......++.+|||+|||+|  .+        +..++..+ .+++++|+            ....++++|+..++++
T Consensus        32 ~~l~~~l~~~~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~  100 (251)
T PRK10258         32 DALLAMLPQRKFTHVLDAGCGPG--WM--------SRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLA  100 (251)
T ss_pred             HHHHHhcCccCCCeEEEeeCCCC--HH--------HHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCC
Confidence            33333333446789999999999  66        66666665 57999999            2356889999998876


Q ss_pred             -CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 -EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 -~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       ++||+|+++.+++++   .++..+|.++.++|+|||+|+++...
T Consensus       101 ~~~fD~V~s~~~l~~~---~d~~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258        101 TATFDLAWSNLAVQWC---GNLSTALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             CCcEEEEEECchhhhc---CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence             789999997775554   67889999999999999999998653

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.43  E-value=2.1e-13  Score=109.99  Aligned_cols=91  Identities=20%  Similarity=0.182  Sum_probs=73.1

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC-------ceEEEEccccccCCC-CceeEEEecccc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMG  118 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~-------~i~~~~~d~~~~~~~-~~fDlIv~~~~~  118 (252)
                      ..++.+|||+|||+|  .+        +..++..|. +++|+|+.       .+.....+......+ ++||+|+|..++
T Consensus        20 ~~~~~~vLDiGcG~G--~~--------~~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l   88 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTG--SF--------LRALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVL   88 (161)
T ss_dssp             TTTTSEEEEESSTTS--HH--------HHHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred             cCCCCEEEEEcCCCC--HH--------HHHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHH
Confidence            678899999999999  66        667777775 89999993       344444444444333 899999998887


Q ss_pred             cccCChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773         119 FYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus       119 ~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                      +++   +++..+|..+.++|+|||++++..+..
T Consensus        89 ~~~---~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   89 EHL---PDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             GGS---SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             hhc---ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            777   679999999999999999999998763

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.43  E-value=7.9e-13  Score=112.12  Aligned_cols=89  Identities=20%  Similarity=0.228  Sum_probs=72.5

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCCCce
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      ..++.+|||+|||+|  ..        +..+++.| .+|+|+|+                 .++++...|+.+++++++|
T Consensus        28 ~~~~~~vLDiGcG~G--~~--------a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f   96 (197)
T PRK11207         28 VVKPGKTLDLGCGNG--RN--------SLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY   96 (197)
T ss_pred             cCCCCcEEEECCCCC--HH--------HHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence            456789999999999  66        67777776 47999999                 3478888998887767789


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      |+|++..+++++ +..+...++..+.++|+|||++++.
T Consensus        97 D~I~~~~~~~~~-~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         97 DFILSTVVLMFL-EAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CEEEEecchhhC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            999998876655 3447889999999999999996543

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.42  E-value=1.6e-12  Score=114.03  Aligned_cols=97  Identities=14%  Similarity=0.105  Sum_probs=77.2

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------CceEEEEccccccCCCC
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------LILEVIQNKIENVELPE  107 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------~~i~~~~~d~~~~~~~~  107 (252)
                      +.......++.+|||+|||+|  .+        +..++.. +..+|+|+|+            .++.++.+|+..+..++
T Consensus        23 ll~~~~~~~~~~vLDiGcG~G--~~--------~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~   92 (258)
T PRK01683         23 LLARVPLENPRYVVDLGCGPG--NS--------TELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQ   92 (258)
T ss_pred             HHhhCCCcCCCEEEEEcccCC--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCC
Confidence            333345677899999999999  65        5565554 3368999999            46889999998776557


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +||+|+++.+++++   .+...++..+.++|+|||.+++..+.
T Consensus        93 ~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683         93 ALDLIFANASLQWL---PDHLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             CccEEEEccChhhC---CCHHHHHHHHHHhcCCCcEEEEECCC
Confidence            99999998876666   56789999999999999999997543

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.41  E-value=1e-12  Score=124.16  Aligned_cols=124  Identities=38%  Similarity=0.532  Sum_probs=94.6

Q ss_pred             HhccHHHHHHHHHHHHhCC----CC----CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-----CCcEEEeeC---
Q psy9773          27 MLDDTVRNEAYRAAICDNP----NI----FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-----PLDHYAPQY---   90 (252)
Q Consensus        27 ~l~~~~~~~~~~~~l~~~~----~~----~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-----~~~v~gvD~---   90 (252)
                      .-+|+.++..|.++|....    ..    ..+..|||||||+|  .|        +..+++++     +.+|+||+.   
T Consensus       156 fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrG--pL--------~~~al~A~~~~~~a~~VyAVEkn~~  225 (448)
T PF05185_consen  156 FEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRG--PL--------SMFALQAGARAGGAVKVYAVEKNPN  225 (448)
T ss_dssp             HCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTS--HH--------HHHHHHTTHHHCCESEEEEEESSTH
T ss_pred             HhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCcc--HH--------HHHHHHHHHHhCCCeEEEEEcCCHh
Confidence            4467778888888775531    11    13678999999999  88        77666654     578999998   


Q ss_pred             ---------------CceEEEEccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCC
Q psy9773          91 ---------------LILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP  155 (252)
Q Consensus        91 ---------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~  155 (252)
                                     ++|+++++|++++..|.++|+||+.++++++.++- ...+|..+.+.|+|||+++++..+.|.+|
T Consensus       226 A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl-~pE~Lda~~rfLkp~Gi~IP~~~t~ylaP  304 (448)
T PF05185_consen  226 AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNEL-SPECLDAADRFLKPDGIMIPSSYTSYLAP  304 (448)
T ss_dssp             HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTS-HHHHHHHGGGGEEEEEEEESSEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCcccccc-CHHHHHHHHhhcCCCCEEeCcchhhEEEE
Confidence                           68999999999999999999999999998887774 55578899999999999999999999999


Q ss_pred             CCChhH
Q psy9773         156 SYSPEI  161 (252)
Q Consensus       156 ~~~~~~  161 (252)
                      +....+
T Consensus       305 iss~~l  310 (448)
T PF05185_consen  305 ISSPKL  310 (448)
T ss_dssp             EE-HHH
T ss_pred             eeCHHH
Confidence            998775

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.41  E-value=1.7e-12  Score=114.87  Aligned_cols=95  Identities=20%  Similarity=0.195  Sum_probs=74.8

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCCC-Cc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVELP-EK  108 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~~-~~  108 (252)
                      ..+.++.+|||||||+|  ..        +..++.....+|+|+|+               .++.+.++|+...+++ ++
T Consensus        48 l~l~~~~~VLDiGcG~G--~~--------a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~  117 (263)
T PTZ00098         48 IELNENSKVLDIGSGLG--GG--------CKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT  117 (263)
T ss_pred             CCCCCCCEEEEEcCCCC--hh--------hHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence            56788899999999999  44        44554432247999999               3688999999888776 78


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ||+|++..+++++. ..+...+|.++.++|+|||+|++....
T Consensus       118 FD~V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        118 FDMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             eEEEEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99999966555542 237889999999999999999997653

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.40  E-value=1.3e-12  Score=110.68  Aligned_cols=89  Identities=22%  Similarity=0.226  Sum_probs=69.9

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCcee
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKVD  110 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fD  110 (252)
                      ..++.+|||+|||+|  .+        +..++..| .+|+|+|+                -++.+..+|+...+++++||
T Consensus        28 ~~~~~~vLDiGcG~G--~~--------a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD   96 (195)
T TIGR00477        28 TVAPCKTLDLGCGQG--RN--------SLYLSLAG-YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD   96 (195)
T ss_pred             cCCCCcEEEeCCCCC--HH--------HHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence            445679999999999  66        67777776 47999999                13567777877666567899


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      +|++..+++++ +..+...++..+.++|+|||++++.
T Consensus        97 ~I~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        97 FIFSTVVFMFL-QAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             EEEEecccccC-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            99998876655 3346789999999999999996554

Part of a tellurite-reducing operon tehA and tehB

>KOG1270|consensus

Probab=99.39  E-value=5.9e-13  Score=115.84  Aligned_cols=85  Identities=21%  Similarity=0.243  Sum_probs=71.0

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------C----ceEEEEccccccCCC
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------L----ILEVIQNKIENVELP  106 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~----~i~~~~~d~~~~~~~  106 (252)
                      |++|||+|||+|  ++        +..+++.| ++|+|+|+                   .    ++.+...++..+.  
T Consensus        90 g~~ilDvGCGgG--LL--------SepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--  156 (282)
T KOG1270|consen   90 GMKILDVGCGGG--LL--------SEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--  156 (282)
T ss_pred             CceEEEeccCcc--cc--------chhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--
Confidence            478999999999  99        99999998 57999999                   2    3555666665554  


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.||.|+|..++.|.   .++..++..+.++|+|||++++++..
T Consensus       157 ~~fDaVvcsevleHV---~dp~~~l~~l~~~lkP~G~lfittin  197 (282)
T KOG1270|consen  157 GKFDAVVCSEVLEHV---KDPQEFLNCLSALLKPNGRLFITTIN  197 (282)
T ss_pred             cccceeeeHHHHHHH---hCHHHHHHHHHHHhCCCCceEeeehh
Confidence            569999997775554   89999999999999999999998754

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.35  E-value=1.2e-11  Score=117.88  Aligned_cols=93  Identities=19%  Similarity=0.189  Sum_probs=74.6

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCC-C
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELP-E  107 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~-~  107 (252)
                      ....++.+|||+|||+|  .+        +..++.....+|+|+|+                .++.|+++|+...+++ +
T Consensus       262 ~~~~~~~~vLDiGcG~G--~~--------~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~  331 (475)
T PLN02336        262 LDLKPGQKVLDVGCGIG--GG--------DFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDN  331 (475)
T ss_pred             cCCCCCCEEEEEeccCC--HH--------HHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCC
Confidence            34567889999999999  44        44555432347999999                3678999999988776 7


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +||+|+|..+++|+   .++..++..+.++|+|||+|++....
T Consensus       332 ~fD~I~s~~~l~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~  371 (475)
T PLN02336        332 SFDVIYSRDTILHI---QDKPALFRSFFKWLKPGGKVLISDYC  371 (475)
T ss_pred             CEEEEEECCccccc---CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            89999997775555   67889999999999999999998654

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.35  E-value=4.5e-12  Score=111.05  Aligned_cols=92  Identities=16%  Similarity=0.208  Sum_probs=72.5

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhh---cCCCcEEEeeC------------------CceEEEEccccccCC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK---VHPLDHYAPQY------------------LILEVIQNKIENVEL  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~---~g~~~v~gvD~------------------~~i~~~~~d~~~~~~  105 (252)
                      ..++.+|||||||+|  .+        +..+++   .+..+++|+|+                  .+++++++|+..+++
T Consensus        54 ~~~~~~vLDlGcGtG--~~--------~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~  123 (247)
T PRK15451         54 VQPGTQVYDLGCSLG--AA--------TLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI  123 (247)
T ss_pred             CCCCCEEEEEcccCC--HH--------HHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC
Confidence            457789999999999  44        444443   22357999999                  268999999988765


Q ss_pred             CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      + .+|+|++..+++++. ......++..+.+.|+|||.|++....
T Consensus       124 ~-~~D~vv~~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        124 E-NASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             C-CCCEEehhhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            4 599999988777774 345788999999999999999998743

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.34  E-value=4.9e-12  Score=111.16  Aligned_cols=88  Identities=17%  Similarity=0.119  Sum_probs=72.6

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC-C-CC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE-L-PE  107 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~-~-~~  107 (252)
                      ..+.+|||+|||+|  .+        +..++..+ .+|+++|+                  .+++++++|+.++. . ++
T Consensus        43 ~~~~~vLDiGcG~G--~~--------a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~  111 (255)
T PRK11036         43 PRPLRVLDAGGGEG--QT--------AIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET  111 (255)
T ss_pred             CCCCEEEEeCCCch--HH--------HHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence            45689999999999  66        67777776 57999999                  25789999998874 2 37


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +||+|++..+++++   .++..++..+.++|+|||++++...
T Consensus       112 ~fD~V~~~~vl~~~---~~~~~~l~~~~~~LkpgG~l~i~~~  150 (255)
T PRK11036        112 PVDLILFHAVLEWV---ADPKSVLQTLWSVLRPGGALSLMFY  150 (255)
T ss_pred             CCCEEEehhHHHhh---CCHHHHHHHHHHHcCCCeEEEEEEE
Confidence            89999998887766   5677899999999999999987643

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.34  E-value=7.1e-12  Score=105.82  Aligned_cols=91  Identities=21%  Similarity=0.299  Sum_probs=71.8

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCce
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      ...++.++||||||.|++          +.++++.|. .|+|+|+                -.|+..+.|+.+..+++.|
T Consensus        27 ~~~~~g~~LDlgcG~GRN----------alyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y   95 (192)
T PF03848_consen   27 PLLKPGKALDLGCGEGRN----------ALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY   95 (192)
T ss_dssp             TTS-SSEEEEES-TTSHH----------HHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred             hhcCCCcEEEcCCCCcHH----------HHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence            345678999999999944          668899985 6999999                3588899999999888899


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      |+|++..+++++ +.+.+..++..+...++|||++++..
T Consensus        96 D~I~st~v~~fL-~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen   96 DFIVSTVVFMFL-QRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             EEEEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEEEEEeccC-CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            999997776666 45578999999999999999988754

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.33  E-value=1.3e-11  Score=105.80  Aligned_cols=89  Identities=26%  Similarity=0.337  Sum_probs=73.0

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-------------CceEEEEccccccCCC-CceeEE
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-------------LILEVIQNKIENVELP-EKVDII  112 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-------------~~i~~~~~d~~~~~~~-~~fDlI  112 (252)
                      ..+.+|||+|||+|  .+        +..++..++ .+++++|+             .++.++.+|+...+++ ++||+|
T Consensus        33 ~~~~~vLDlG~G~G--~~--------~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  102 (240)
T TIGR02072        33 FIPASVLDIGCGTG--YL--------TRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLI  102 (240)
T ss_pred             CCCCeEEEECCCcc--HH--------HHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEE
Confidence            44579999999999  55        556666543 46899999             3578999999988766 789999


Q ss_pred             EecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++..+++++   .++..++..+.++|+|||.+++...
T Consensus       103 i~~~~l~~~---~~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       103 VSNLALQWC---DDLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             EEhhhhhhc---cCHHHHHHHHHHHcCCCcEEEEEeC
Confidence            998876665   6788999999999999999998764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.33  E-value=5.5e-12  Score=106.08  Aligned_cols=92  Identities=18%  Similarity=0.113  Sum_probs=74.1

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCCCCceeE
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVELPEKVDI  111 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~~~~fDl  111 (252)
                      ...-.++||+|||.|  .+        +..++.+ +.+++++|+               ++|+++++|+....++++||+
T Consensus        41 ~~ry~~alEvGCs~G--~l--------T~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDL  109 (201)
T PF05401_consen   41 RRRYRRALEVGCSIG--VL--------TERLAPR-CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDL  109 (201)
T ss_dssp             TSSEEEEEEE--TTS--HH--------HHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEE
T ss_pred             ccccceeEecCCCcc--HH--------HHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeE
Confidence            344478999999999  77        7788777 478999999               789999999988877799999


Q ss_pred             EEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ||++-+++++....++..++..+...|+|||.|++.+.
T Consensus       110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            99999999997777899999999999999999999774

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.33  E-value=8.4e-12  Score=111.11  Aligned_cols=98  Identities=21%  Similarity=0.193  Sum_probs=72.4

Q ss_pred             HHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------------CceEEEEc
Q psy9773          38 RAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------------LILEVIQN   98 (252)
Q Consensus        38 ~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------------~~i~~~~~   98 (252)
                      .+.+.....+.+|.+|||||||.|  .+        +..+++. |+ +|+|+.+                  .++.+..+
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG--~~--------~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~  119 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWG--GL--------AIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQ  119 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTS--HH--------HHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCcc--HH--------HHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEe
Confidence            345666678999999999999999  66        6677775 64 7999999                  57899999


Q ss_pred             cccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          99 KIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        99 d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |..+++  .+||.|++..+..++. ...+..++..+.++|+|||++++...
T Consensus       120 D~~~~~--~~fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i  167 (273)
T PF02353_consen  120 DYRDLP--GKFDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTI  167 (273)
T ss_dssp             -GGG-----S-SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred             eccccC--CCCCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEec
Confidence            998876  4899999988777663 35789999999999999999998654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK08317 hypothetical protein; Provisional

Probab=99.33  E-value=1.2e-11  Score=105.83  Aligned_cols=101  Identities=19%  Similarity=0.195  Sum_probs=78.4

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC----------------CceEEEEc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY----------------LILEVIQN   98 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~----------------~~i~~~~~   98 (252)
                      +...+.......++.+|||+|||+|  .+        +..++...  ..+++|+|+                .++.++.+
T Consensus         7 ~~~~~~~~~~~~~~~~vLdiG~G~G--~~--------~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~   76 (241)
T PRK08317          7 YRARTFELLAVQPGDRVLDVGCGPG--ND--------ARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG   76 (241)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCC--HH--------HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec
Confidence            3444444456788899999999999  55        55555432  357999998                35888999


Q ss_pred             cccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          99 KIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        99 d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+..++++ ++||+|++..+++++   .++..++..+.++|+|||.+++..+.
T Consensus        77 d~~~~~~~~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         77 DADGLPFPDGSFDAVRSDRVLQHL---EDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             ccccCCCCCCCceEEEEechhhcc---CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            99887766 789999997776555   67889999999999999999987653

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.33  E-value=5.1e-12  Score=112.61  Aligned_cols=91  Identities=14%  Similarity=0.029  Sum_probs=74.7

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPE  107 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~  107 (252)
                      ....|++|||||||+|  ..        +..++..|++.|+|+|.                  ..+.++...+.+++..+
T Consensus       112 ~~L~gk~VLDIGC~nG--Y~--------~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~  181 (315)
T PF08003_consen  112 PDLKGKRVLDIGCNNG--YY--------SFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG  181 (315)
T ss_pred             CCcCCCEEEEecCCCc--HH--------HHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence            3578999999999999  66        77888999999999999                  22334434566665558


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .||+|+|..+++|.   .++...|..++..|+|||.|++.+.
T Consensus       182 ~FDtVF~MGVLYHr---r~Pl~~L~~Lk~~L~~gGeLvLETl  220 (315)
T PF08003_consen  182 AFDTVFSMGVLYHR---RSPLDHLKQLKDSLRPGGELVLETL  220 (315)
T ss_pred             CcCEEEEeeehhcc---CCHHHHHHHHHHhhCCCCEEEEEEe
Confidence            89999998886665   8899999999999999999998764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.32  E-value=1.4e-11  Score=103.86  Aligned_cols=88  Identities=23%  Similarity=0.265  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVELPE  107 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~  107 (252)
                      ...++.+|||+|||+|  .+        +..++. .+..+|+++|+                 .++.++++|+.+++..+
T Consensus        42 ~l~~g~~VLDiGcGtG--~~--------al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~  111 (187)
T PRK00107         42 YLPGGERVLDVGSGAG--FP--------GIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEE  111 (187)
T ss_pred             hcCCCCeEEEEcCCCC--HH--------HHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCC
Confidence            3445899999999999  55        555554 33468999999                 35899999998876657


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +||+|+++.+       .++..++..+.++|+|||++++....
T Consensus       112 ~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        112 KFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             CccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            8999998542       35678999999999999999988654

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.30  E-value=3e-11  Score=102.74  Aligned_cols=93  Identities=25%  Similarity=0.297  Sum_probs=73.1

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC---------------CceEEEEccccccCCC-
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY---------------LILEVIQNKIENVELP-  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~---------------~~i~~~~~d~~~~~~~-  106 (252)
                      ....++.+|||+|||+|  .+        +..+++.++  .+++++|+               .++.++.+|+...+++ 
T Consensus        35 ~~~~~~~~vldiG~G~G--~~--------~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  104 (223)
T TIGR01934        35 IGVFKGQKVLDVACGTG--DL--------AIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFED  104 (223)
T ss_pred             hccCCCCeEEEeCCCCC--hh--------HHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCC
Confidence            33457899999999999  55        555555444  37999999               2578999999888765 


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++||+|++..++++.   .++..++..+.++|+|||++++....
T Consensus       105 ~~~D~i~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       105 NSFDAVTIAFGLRNV---TDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             CcEEEEEEeeeeCCc---ccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            789999986664444   67889999999999999999986543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00740 methyltransferase, putative

Probab=99.29  E-value=1.6e-11  Score=106.82  Aligned_cols=92  Identities=15%  Similarity=0.211  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc---CCCcEEEeeC------------------CceEEEEccccccCC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV---HPLDHYAPQY------------------LILEVIQNKIENVEL  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~---g~~~v~gvD~------------------~~i~~~~~d~~~~~~  105 (252)
                      ..++.+|||+|||+|  .+        +..+++.   +..+++|+|+                  .+++++++|+..+++
T Consensus        51 ~~~~~~iLDlGcG~G--~~--------~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~  120 (239)
T TIGR00740        51 VTPDSNVYDLGCSRG--AA--------TLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI  120 (239)
T ss_pred             CCCCCEEEEecCCCC--HH--------HHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC
Confidence            357789999999999  55        4445442   2357999999                  257899999998876


Q ss_pred             CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      + .+|+|++..+++++. ..+...++..+.++|+|||+|++....
T Consensus       121 ~-~~d~v~~~~~l~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d~~  163 (239)
T TIGR00740       121 K-NASMVILNFTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSEKF  163 (239)
T ss_pred             C-CCCEEeeecchhhCC-HHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence            5 589999988777763 346789999999999999999998753

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.29  E-value=1.3e-11  Score=110.39  Aligned_cols=88  Identities=20%  Similarity=0.260  Sum_probs=71.2

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCceeE
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKVDI  111 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fDl  111 (252)
                      .++.+|||+|||+|  ..        +..++..| .+|+|+|+                .++.+...|+....++++||+
T Consensus       119 ~~~~~vLDlGcG~G--~~--------~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~  187 (287)
T PRK12335        119 VKPGKALDLGCGQG--RN--------SLYLALLG-FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDF  187 (287)
T ss_pred             cCCCCEEEeCCCCC--HH--------HHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccE
Confidence            34569999999999  66        66777776 47999999                257778888877766788999


Q ss_pred             EEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773         112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      |++..+++++ +..+...++..+.++|+|||++++.
T Consensus       188 I~~~~vl~~l-~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        188 ILSTVVLMFL-NRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             EEEcchhhhC-CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9998877765 3457889999999999999997654

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.28  E-value=1.8e-11  Score=102.63  Aligned_cols=85  Identities=24%  Similarity=0.355  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEccccccCCCCce
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      ..+.+|||+|||+|  .+        +..++..+ ..+|+|+|.                 .+++++++|+.++...++|
T Consensus        41 ~~~~~vLDiGcGtG--~~--------s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~f  110 (181)
T TIGR00138        41 LDGKKVIDIGSGAG--FP--------GIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQF  110 (181)
T ss_pred             cCCCeEEEecCCCC--cc--------HHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCc
Confidence            34889999999999  55        55655543 357999999                 3689999999987555899


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |+|++..    +   .++..++..+.++|+|||++++...
T Consensus       111 D~I~s~~----~---~~~~~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138       111 DVITSRA----L---ASLNVLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             cEEEehh----h---hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence            9999854    2   2455678888999999999998754

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.28  E-value=3.8e-11  Score=103.14  Aligned_cols=92  Identities=22%  Similarity=0.252  Sum_probs=72.1

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC------------------CceEEEEccccccCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY------------------LILEVIQNKIENVEL  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~------------------~~i~~~~~d~~~~~~  105 (252)
                      ...++.+|||+|||+|  .+        +..++..+.  .+++++|+                  .++.++.+|+...+.
T Consensus        48 ~~~~~~~vldiG~G~G--~~--------~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  117 (239)
T PRK00216         48 GVRPGDKVLDLACGTG--DL--------AIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF  117 (239)
T ss_pred             CCCCCCeEEEeCCCCC--HH--------HHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence            3446789999999999  55        555555443  68999998                  247888899988776


Q ss_pred             C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      + ++||+|++..+++++   .++..++..+.++|+|||++++....
T Consensus       118 ~~~~~D~I~~~~~l~~~---~~~~~~l~~~~~~L~~gG~li~~~~~  160 (239)
T PRK00216        118 PDNSFDAVTIAFGLRNV---PDIDKALREMYRVLKPGGRLVILEFS  160 (239)
T ss_pred             CCCCccEEEEecccccC---CCHHHHHHHHHHhccCCcEEEEEEec
Confidence            5 789999987665544   67889999999999999999876543

>KOG1540|consensus

Probab=99.27  E-value=6.1e-11  Score=102.97  Aligned_cols=101  Identities=18%  Similarity=0.201  Sum_probs=79.1

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC------CcEEEeeC-------------------
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP------LDHYAPQY-------------------   90 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~------~~v~gvD~-------------------   90 (252)
                      |.+..........+.++||++||||-+          ++.+.+ .+.      .+|+.+|+                   
T Consensus        88 WKd~~v~~L~p~~~m~~lDvaGGTGDi----------aFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~  157 (296)
T KOG1540|consen   88 WKDMFVSKLGPGKGMKVLDVAGGTGDI----------AFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA  157 (296)
T ss_pred             HHHHhhhccCCCCCCeEEEecCCcchh----------HHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc
Confidence            344454445667789999999999944          444433 222      57999999                   


Q ss_pred             -CceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          91 -LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        91 -~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       .++.++.+|+.++|++ .+||..++   .+.+.+-.++.+.|++++|+|||||+|.+-..+
T Consensus       158 ~~~~~w~~~dAE~LpFdd~s~D~yTi---afGIRN~th~~k~l~EAYRVLKpGGrf~cLeFs  216 (296)
T KOG1540|consen  158 SSRVEWVEGDAEDLPFDDDSFDAYTI---AFGIRNVTHIQKALREAYRVLKPGGRFSCLEFS  216 (296)
T ss_pred             CCceEEEeCCcccCCCCCCcceeEEE---ecceecCCCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence             4588999999999999 89999987   455667788999999999999999999876543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.27  E-value=2.5e-11  Score=107.45  Aligned_cols=93  Identities=24%  Similarity=0.300  Sum_probs=73.8

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC-----------------CceEEEEccccccCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY-----------------LILEVIQNKIENVEL  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~-----------------~~i~~~~~d~~~~~~  105 (252)
                      ....++.+|||+|||+|  ..        +..+++ .++ .+|+++|+                 .+++++.+|+..+++
T Consensus        73 ~~~~~g~~VLDiG~G~G--~~--------~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~  142 (272)
T PRK11873         73 AELKPGETVLDLGSGGG--FD--------CFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV  142 (272)
T ss_pred             ccCCCCCEEEEeCCCCC--HH--------HHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC
Confidence            34678899999999999  54        444443 343 36999998                 478899999998887


Q ss_pred             C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      + ++||+|+++.++++.   ++...++..+.++|+|||+|++....
T Consensus       143 ~~~~fD~Vi~~~v~~~~---~d~~~~l~~~~r~LkpGG~l~i~~~~  185 (272)
T PRK11873        143 ADNSVDVIISNCVINLS---PDKERVFKEAFRVLKPGGRFAISDVV  185 (272)
T ss_pred             CCCceeEEEEcCcccCC---CCHHHHHHHHHHHcCCCcEEEEEEee
Confidence            6 789999998775554   56778999999999999999987643

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.26  E-value=5.8e-12  Score=94.53  Aligned_cols=78  Identities=24%  Similarity=0.305  Sum_probs=44.8

Q ss_pred             EEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccC---CCCceeEE
Q psy9773          54 LDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVE---LPEKVDII  112 (252)
Q Consensus        54 LDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~---~~~~fDlI  112 (252)
                      ||+|||+|  .+        +..+... ...+++++|+                 .....+..+..+..   .+++||+|
T Consensus         1 LdiGcG~G--~~--------~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V   70 (99)
T PF08242_consen    1 LDIGCGTG--RL--------LRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLV   70 (99)
T ss_dssp             -EESTTTS---T--------TTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEE
T ss_pred             CEeCccCh--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhccccccccee
Confidence            79999999  44        3343333 3367999999                 22233333333332   22599999


Q ss_pred             EecccccccCChhhHHHHHHHHhccccCCeEE
Q psy9773         113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVM  144 (252)
Q Consensus       113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~l  144 (252)
                      ++..+++++   +++..++..+.++|+|||+|
T Consensus        71 ~~~~vl~~l---~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   71 VASNVLHHL---EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             EEE-TTS-----S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhhhhHhhh---hhHHHHHHHHHHHcCCCCCC
Confidence            998887777   78889999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK05785 hypothetical protein; Provisional

Probab=99.26  E-value=2.5e-11  Score=105.18  Aligned_cols=82  Identities=22%  Similarity=0.239  Sum_probs=65.4

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------CceEEEEccccccCCC-CceeEEEeccc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------LILEVIQNKIENVELP-EKVDIIVSEWM  117 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------~~i~~~~~d~~~~~~~-~~fDlIv~~~~  117 (252)
                      .++.+|||||||||  .+        +..+++....+|+|+|+         ....++++|+.+++++ ++||+|++..+
T Consensus        50 ~~~~~VLDlGcGtG--~~--------~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~  119 (226)
T PRK05785         50 GRPKKVLDVAAGKG--EL--------SYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFA  119 (226)
T ss_pred             CCCCeEEEEcCCCC--HH--------HHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecCh
Confidence            34789999999999  55        55666652257999999         2345788999999887 89999999776


Q ss_pred             ccccCChhhHHHHHHHHhccccCCe
Q psy9773         118 GFYLLHESMIDSVIFARDKFLKPEG  142 (252)
Q Consensus       118 ~~~l~~~~~~~~~l~~l~~~LkpgG  142 (252)
                      ++++   .++..+++++.|+|+|.+
T Consensus       120 l~~~---~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        120 LHAS---DNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             hhcc---CCHHHHHHHHHHHhcCce
Confidence            5544   788999999999999953

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.24  E-value=2.3e-11  Score=104.37  Aligned_cols=86  Identities=16%  Similarity=0.104  Sum_probs=68.9

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------CceEEEEccccccCCCCceeE
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------LILEVIQNKIENVELPEKVDI  111 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~fDl  111 (252)
                      ++|||+|||+|  .+        +..+++.. ..+++|+|+                  .+++++.+|+...+.+++||+
T Consensus         1 ~~vLDiGcG~G--~~--------~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~   70 (224)
T smart00828        1 KRVLDFGCGYG--SD--------LIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDL   70 (224)
T ss_pred             CeEEEECCCCC--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCE
Confidence            47999999999  54        45555532 357999998                  357899999877666688999


Q ss_pred             EEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |++..+++++   .++..+|..+.++|+|||++++...
T Consensus        71 I~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       71 VFGFEVIHHI---KDKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             eehHHHHHhC---CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            9997776665   5678999999999999999998764

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.24  E-value=5.1e-11  Score=113.48  Aligned_cols=94  Identities=21%  Similarity=0.369  Sum_probs=74.8

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccc--cCCC-
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIEN--VELP-  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~--~~~~-  106 (252)
                      ....++.+|||||||+|  .+        +..+++.+ .+|+|+|+               .++.++++|+..  ++++ 
T Consensus        33 l~~~~~~~vLDlGcG~G--~~--------~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~  101 (475)
T PLN02336         33 LPPYEGKSVLELGAGIG--RF--------TGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD  101 (475)
T ss_pred             cCccCCCEEEEeCCCcC--HH--------HHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence            34456789999999999  66        66666664 57999998               368899999964  4445 


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++||+|++.++++++.. ..+..++..+.++|+|||++++....
T Consensus       102 ~~fD~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~~  144 (475)
T PLN02336        102 GSVDLIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRESC  144 (475)
T ss_pred             CCEEEEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            78999999988887743 35789999999999999999987644

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.24  E-value=7.3e-11  Score=104.79  Aligned_cols=100  Identities=24%  Similarity=0.174  Sum_probs=82.3

Q ss_pred             HHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEcc
Q psy9773          38 RAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNK   99 (252)
Q Consensus        38 ~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d   99 (252)
                      .+.+....++.+|.+|||||||-|  .+        ++++++....+|+|+++                  .+++++..|
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG--~l--------~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d  130 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWG--GL--------AIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD  130 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChh--HH--------HHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc
Confidence            344555678999999999999999  66        77777763367999999                  478899999


Q ss_pred             ccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         100 IENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..++.  ++||-|+|..|..|+-. .....+|..+.++|+|||++++.+..
T Consensus       131 ~rd~~--e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~I~  178 (283)
T COG2230         131 YRDFE--EPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHSIT  178 (283)
T ss_pred             ccccc--cccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEEec
Confidence            98886  44999999888777644 35899999999999999999987654

>PRK06922 hypothetical protein; Provisional

Probab=99.22  E-value=6.8e-11  Score=115.15  Aligned_cols=94  Identities=23%  Similarity=0.335  Sum_probs=72.4

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC----------------CceEEEEccccccC--CC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------------LILEVIQNKIENVE--LP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------------~~i~~~~~d~~~~~--~~  106 (252)
                      ...++.+|||+|||+|  .+        +..++. .+..+++|+|+                .++.++++|+.+++  ++
T Consensus       415 d~~~g~rVLDIGCGTG--~l--------s~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fe  484 (677)
T PRK06922        415 DYIKGDTIVDVGAGGG--VM--------LDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFE  484 (677)
T ss_pred             hhcCCCEEEEeCCCCC--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccC
Confidence            3456889999999999  55        444444 33368999999                24677889998876  44


Q ss_pred             -CceeEEEecccccccC----------ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 -EKVDIIVSEWMGFYLL----------HESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 -~~fDlIv~~~~~~~l~----------~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                       ++||+|++++++|++.          +..++..+|.++.++|+|||++++...
T Consensus       485 deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        485 KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence             7899999987766542          234788999999999999999999764

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.22  E-value=2e-11  Score=92.17  Aligned_cols=79  Identities=19%  Similarity=0.352  Sum_probs=60.4

Q ss_pred             EEEEcCCcCchhhhhccCccchHHHhhc---CC-CcEEEeeC----------------CceEEEEccccccCCC-CceeE
Q psy9773          53 VLDVGTGTGKSILLQGHGVDHHSFCTKV---HP-LDHYAPQY----------------LILEVIQNKIENVELP-EKVDI  111 (252)
Q Consensus        53 VLDlGcGtG~~~ll~~~~v~~s~~~a~~---g~-~~v~gvD~----------------~~i~~~~~d~~~~~~~-~~fDl  111 (252)
                      |||+|||+|..+          ..+...   ++ .+++|+|+                .+++++++|+.+++.. ++||+
T Consensus         1 ILDlgcG~G~~~----------~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~   70 (101)
T PF13649_consen    1 ILDLGCGTGRVT----------RALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDL   70 (101)
T ss_dssp             -EEET-TTSHHH----------HHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEE
T ss_pred             CEEeecCCcHHH----------HHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeE
Confidence            799999999444          344433   32 68999999                4789999999998755 79999


Q ss_pred             EEeccc-ccccCChhhHHHHHHHHhccccCCe
Q psy9773         112 IVSEWM-GFYLLHESMIDSVIFARDKFLKPEG  142 (252)
Q Consensus       112 Iv~~~~-~~~l~~~~~~~~~l~~l~~~LkpgG  142 (252)
                      |++... +++ .+......+++++.++|+|||
T Consensus        71 v~~~~~~~~~-~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   71 VVCSGLSLHH-LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EEE-TTGGGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred             EEEcCCccCC-CCHHHHHHHHHHHHHHhCCCC
Confidence            999544 566 566689999999999999998

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.22  E-value=1.3e-10  Score=96.26  Aligned_cols=91  Identities=25%  Similarity=0.266  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCC-cEEEeeC-----------------CceEEEEccccccCCCCcee
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPL-DHYAPQY-----------------LILEVIQNKIENVELPEKVD  110 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~-~v~gvD~-----------------~~i~~~~~d~~~~~~~~~fD  110 (252)
                      .+.+|||+|||+|  .+        +..++..++. +|+++|+                 .++.++.+|+.....+++||
T Consensus        31 ~~~~vLDlG~G~G--~i--------~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD  100 (170)
T PF05175_consen   31 KGGRVLDLGCGSG--VI--------SLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFD  100 (170)
T ss_dssp             TTCEEEEETSTTS--HH--------HHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEE
T ss_pred             cCCeEEEecCChH--HH--------HHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccccccee
Confidence            7789999999999  77        7788876654 7999999                 23889999987765568999


Q ss_pred             EEEecccccccCC--hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         111 IIVSEWMGFYLLH--ESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       111 lIv~~~~~~~l~~--~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +|++++-.+....  ......++..+.++|+|||.|++...
T Consensus       101 ~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen  101 LIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             EEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence            9999875332211  12467899999999999999977554

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.21  E-value=7.8e-11  Score=100.95  Aligned_cols=94  Identities=15%  Similarity=0.142  Sum_probs=69.7

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC------CceEEEEccccccC--------CC-C
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY------LILEVIQNKIENVE--------LP-E  107 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~------~~i~~~~~d~~~~~--------~~-~  107 (252)
                      ....++.+|||||||+|  .+        +..+++. +. ..|+|+|+      .++.++++|+.+..        .. +
T Consensus        47 ~~~~~~~~VLDlG~GtG--~~--------t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         47 KLFKPGMTVVDLGAAPG--GW--------SQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             ccCCCCCEEEEEcccCC--HH--------HHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence            34577899999999999  55        5555553 32 47999998      36889999998853        33 7


Q ss_pred             ceeEEEecccccccCChh-h-------HHHHHHHHhccccCCeEEEeec
Q psy9773         108 KVDIIVSEWMGFYLLHES-M-------IDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~-~-------~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +||+|+|+.+.++..... +       ...+|..+.++|+|||.|++..
T Consensus       117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~  165 (209)
T PRK11188        117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV  165 (209)
T ss_pred             CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            899999976544432110 1       2568899999999999999965

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.21  E-value=6.8e-11  Score=104.78  Aligned_cols=58  Identities=16%  Similarity=0.202  Sum_probs=49.0

Q ss_pred             ceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          92 ILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        92 ~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++.|.++|+.+.+++ ++||+|+|.++++++. .+....++..+.++|+|||+|++....
T Consensus       186 ~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~pGG~L~lg~~E  244 (264)
T smart00138      186 RVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKPGGYLFLGHSE  244 (264)
T ss_pred             cCEEeeccCCCCCCccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence            578899999988765 8899999988877763 346778999999999999999997654

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.20  E-value=4.7e-11  Score=91.82  Aligned_cols=90  Identities=24%  Similarity=0.247  Sum_probs=68.6

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC--CC-Cc
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE--LP-EK  108 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~--~~-~~  108 (252)
                      |.+|||+|||+|  .+        ...+++.+..+++|+|+                  .++.++++|+....  .+ ++
T Consensus         1 g~~vlD~~~G~G--~~--------~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   70 (117)
T PF13659_consen    1 GDRVLDPGCGSG--TF--------LLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGK   70 (117)
T ss_dssp             TEEEEEETSTTC--HH--------HHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-
T ss_pred             CCEEEEcCcchH--HH--------HHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCce
Confidence            568999999999  66        66666666678999999                  57899999998886  33 88


Q ss_pred             eeEEEecccccccCC-----hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         109 VDIIVSEWMGFYLLH-----ESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       109 fDlIv~~~~~~~l~~-----~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ||+|++++-......     ......++..+.++|+|||.+++..+
T Consensus        71 ~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   71 FDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            999999765432211     12457889999999999999998764

...

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.19  E-value=1.3e-10  Score=106.27  Aligned_cols=88  Identities=23%  Similarity=0.138  Sum_probs=70.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC--------------CceEEEEccccccCCC-CceeE
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY--------------LILEVIQNKIENVELP-EKVDI  111 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~--------------~~i~~~~~d~~~~~~~-~~fDl  111 (252)
                      .++.+|||||||+|  .+        +..+++ .+..+++++|+              .++.++.+|+.+++++ ++||+
T Consensus       112 ~~~~~VLDLGcGtG--~~--------~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDv  181 (340)
T PLN02490        112 DRNLKVVDVGGGTG--FT--------TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADR  181 (340)
T ss_pred             CCCCEEEEEecCCc--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeE
Confidence            46789999999999  44        444444 33457999998              3688999999988876 78999


Q ss_pred             EEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      |++..+++++   .+...+|.++.++|+|||++++..
T Consensus       182 VIs~~~L~~~---~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        182 YVSAGSIEYW---PDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             EEEcChhhhC---CCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9997776665   566789999999999999998764

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.19  E-value=2.7e-10  Score=87.89  Aligned_cols=88  Identities=14%  Similarity=0.166  Sum_probs=65.9

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccC--
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVE--  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~--  104 (252)
                      ....++.+|||+|||+|  .+        +..+++. +..+++++|+                 .++.++.+|+....  
T Consensus        15 ~~~~~~~~vldlG~G~G--~~--------~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   84 (124)
T TIGR02469        15 LRLRPGDVLWDIGAGSG--SI--------TIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED   84 (124)
T ss_pred             cCCCCCCEEEEeCCCCC--HH--------HHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh
Confidence            34566789999999999  55        5566654 3368999998                 46788888876432  


Q ss_pred             CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .+.+||+|++...   .   .....++..+.++|+|||+|++..
T Consensus        85 ~~~~~D~v~~~~~---~---~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        85 SLPEPDRVFIGGS---G---GLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             hcCCCCEEEECCc---c---hhHHHHHHHHHHHcCCCCEEEEEe
Confidence            2268999998543   1   235689999999999999999875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.18  E-value=1.8e-10  Score=107.28  Aligned_cols=96  Identities=22%  Similarity=0.245  Sum_probs=73.4

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------CceEEEEccccccCCC
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LILEVIQNKIENVELP  106 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~i~~~~~d~~~~~~~  106 (252)
                      +.......++.+|||+|||+|  .+        +..+++....+|+|+|+              ..+++..+|...+  +
T Consensus       159 l~~~l~l~~g~rVLDIGcG~G--~~--------a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l--~  226 (383)
T PRK11705        159 ICRKLQLKPGMRVLDIGCGWG--GL--------ARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL--N  226 (383)
T ss_pred             HHHHhCCCCCCEEEEeCCCcc--HH--------HHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc--C
Confidence            333456778999999999999  66        56666542347999999              2467777787665  4


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++||+|++..+++++. ..++..++..+.++|+|||++++...
T Consensus       227 ~~fD~Ivs~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        227 GQFDRIVSVGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             CCCCEEEEeCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            7899999977766653 33578899999999999999998754

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=8.2e-11  Score=105.25  Aligned_cols=87  Identities=25%  Similarity=0.274  Sum_probs=65.6

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------CceE----EEEccccccCCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LILE----VIQNKIENVELPE  107 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~i~----~~~~d~~~~~~~~  107 (252)
                      ...+|.+|||+|||||  .|        ++.+++.|+++++|+|+              +.+.    ....+....+..+
T Consensus       159 ~~~~g~~vlDvGcGSG--IL--------aIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~  228 (300)
T COG2264         159 LLKKGKTVLDVGCGSG--IL--------AIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENG  228 (300)
T ss_pred             hhcCCCEEEEecCChh--HH--------HHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccC
Confidence            3458999999999999  99        99999999999999999              3333    1111111222225


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +||+||++-..      .-+..+...+.++|+|||+++++.
T Consensus       229 ~~DvIVANILA------~vl~~La~~~~~~lkpgg~lIlSG  263 (300)
T COG2264         229 PFDVIVANILA------EVLVELAPDIKRLLKPGGRLILSG  263 (300)
T ss_pred             cccEEEehhhH------HHHHHHHHHHHHHcCCCceEEEEe
Confidence            89999996632      235578888999999999999986

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.18  E-value=2.4e-10  Score=97.63  Aligned_cols=89  Identities=8%  Similarity=0.094  Sum_probs=67.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------CceEEEEccccccCCC-CceeE
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------LILEVIQNKIENVELP-EKVDI  111 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------~~i~~~~~d~~~~~~~-~~fDl  111 (252)
                      ...++.+|||+|||+|  .+        +..++.. +..+++|+|+            .++.++++|+.+ +++ ++||+
T Consensus        40 ~~~~~~~VLDiGCG~G--~~--------~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~  108 (204)
T TIGR03587        40 RLPKIASILELGANIG--MN--------LAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDL  108 (204)
T ss_pred             hcCCCCcEEEEecCCC--HH--------HHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEE
Confidence            3456789999999999  55        4555553 3467999999            457888999887 554 79999


Q ss_pred             EEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      |++..+++|+. ..++..++.++.+++  ++.+++..
T Consensus       109 V~~~~vL~hl~-p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       109 VLTKGVLIHIN-PDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             EEECChhhhCC-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence            99988888774 457889999999987  45666544

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG4300|consensus

Probab=99.16  E-value=2.4e-10  Score=96.58  Aligned_cols=87  Identities=21%  Similarity=0.193  Sum_probs=68.9

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceE-EEEccccccC-CC-Cce
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILE-VIQNKIENVE-LP-EKV  109 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~-~~~~d~~~~~-~~-~~f  109 (252)
                      ...||+||||||++.-          +....+..+|+++|.                 ..+. |+.++..+++ .+ +++
T Consensus        77 K~~vLEvgcGtG~Nfk----------fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~  146 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFK----------FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSY  146 (252)
T ss_pred             ccceEEecccCCCCcc----------cccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCe
Confidence            3568999999995443          222222357999999                 3455 8999999997 34 899


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |+||+..+++..   .++.+.|+++.|+|+|||++++...
T Consensus       147 DtVV~TlvLCSv---e~~~k~L~e~~rlLRpgG~iifiEH  183 (252)
T KOG4300|consen  147 DTVVCTLVLCSV---EDPVKQLNEVRRLLRPGGRIIFIEH  183 (252)
T ss_pred             eeEEEEEEEecc---CCHHHHHHHHHHhcCCCcEEEEEec
Confidence            999998887766   7889999999999999999998764

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.15  E-value=1.1e-10  Score=104.87  Aligned_cols=94  Identities=24%  Similarity=0.287  Sum_probs=66.9

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEE
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVI   96 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~   96 (252)
                      ....++|..  ...++++|||+|||||  +|        ++.+++.|+++|+|+|+                  .++.+ 
T Consensus       149 ~lcl~~l~~--~~~~g~~vLDvG~GSG--IL--------aiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-  215 (295)
T PF06325_consen  149 RLCLELLEK--YVKPGKRVLDVGCGSG--IL--------AIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV-  215 (295)
T ss_dssp             HHHHHHHHH--HSSTTSEEEEES-TTS--HH--------HHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-
T ss_pred             HHHHHHHHH--hccCCCEEEEeCCcHH--HH--------HHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-
Confidence            333444443  3577899999999999  99        99999999999999999                  33322 


Q ss_pred             EccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          97 QNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        97 ~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                       ....+. ..++||+|+++....      -+..++..+.++|+|||+|+++..
T Consensus       216 -~~~~~~-~~~~~dlvvANI~~~------vL~~l~~~~~~~l~~~G~lIlSGI  260 (295)
T PF06325_consen  216 -SLSEDL-VEGKFDLVVANILAD------VLLELAPDIASLLKPGGYLILSGI  260 (295)
T ss_dssp             -SCTSCT-CCS-EEEEEEES-HH------HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred             -EEeccc-ccccCCEEEECCCHH------HHHHHHHHHHHhhCCCCEEEEccc
Confidence             211111 127899999966522      356788889999999999999864

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.15  E-value=3.2e-10  Score=105.11  Aligned_cols=94  Identities=13%  Similarity=0.071  Sum_probs=69.5

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC--------------------CceEEEEccccccC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY--------------------LILEVIQNKIENVE  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~--------------------~~i~~~~~d~~~~~  104 (252)
                      +...+.+|||+|||+|  .+        +..+++.++ .+|+++|+                    .++.++..|+....
T Consensus       225 p~~~~~~VLDLGCGtG--vi--------~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~  294 (378)
T PRK15001        225 PENLEGEIVDLGCGNG--VI--------GLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV  294 (378)
T ss_pred             CcccCCeEEEEecccc--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC
Confidence            3344579999999999  77        777766543 58999999                    14677888876543


Q ss_pred             CCCceeEEEecccccccC--ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         105 LPEKVDIIVSEWMGFYLL--HESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~--~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .+.+||+|+|++..|...  .......+|..+.++|+|||.|++...
T Consensus       295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            336899999987654331  223456889999999999999999864

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.15  E-value=2.4e-10  Score=98.71  Aligned_cols=96  Identities=26%  Similarity=0.307  Sum_probs=72.8

Q ss_pred             HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEcccccc
Q psy9773          40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENV  103 (252)
Q Consensus        40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~  103 (252)
                      .+.......++.+|||+|||+|  .+        +..+++.+ .+++++|+                ..+.++.+++..+
T Consensus        39 ~l~~~~~~~~~~~vLdiG~G~G--~~--------~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~  107 (233)
T PRK05134         39 YIREHAGGLFGKRVLDVGCGGG--IL--------SESMARLG-ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEEL  107 (233)
T ss_pred             HHHHhccCCCCCeEEEeCCCCC--HH--------HHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHh
Confidence            3333334567899999999999  66        56666665 46999998                2356777887776


Q ss_pred             C--CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         104 E--LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       104 ~--~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +  ..++||+|++..++.+.   .++..++..+.++|+|||++++..+
T Consensus       108 ~~~~~~~fD~Ii~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        108 AAEHPGQFDVVTCMEMLEHV---PDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             hhhcCCCccEEEEhhHhhcc---CCHHHHHHHHHHHcCCCcEEEEEec
Confidence            4  23789999997665544   6778899999999999999998764

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.14  E-value=2.3e-10  Score=95.28  Aligned_cols=92  Identities=18%  Similarity=0.173  Sum_probs=68.9

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCcee
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKVD  110 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fD  110 (252)
                      ..++.+|||+|||+|  .+        +..++..+. +++++|+                .++.++.+|+.... .++||
T Consensus        17 ~~~~~~vLdlG~G~G--~~--------~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~fD   84 (179)
T TIGR00537        17 ELKPDDVLEIGAGTG--LV--------AIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV-RGKFD   84 (179)
T ss_pred             hcCCCeEEEeCCChh--HH--------HHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc-CCccc
Confidence            345678999999999  66        667777765 7999999                24677888886654 36899


Q ss_pred             EEEecccccccCCh------------------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         111 IIVSEWMGFYLLHE------------------SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       111 lIv~~~~~~~l~~~------------------~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|++++..+.....                  ..+..++..+.++|+|||.+++....
T Consensus        85 ~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~  142 (179)
T TIGR00537        85 VILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS  142 (179)
T ss_pred             EEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence            99997654333211                  12567899999999999999887654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.13  E-value=6.8e-10  Score=95.04  Aligned_cols=106  Identities=22%  Similarity=0.277  Sum_probs=78.3

Q ss_pred             cHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------C-c
Q psy9773          30 DTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------L-I   92 (252)
Q Consensus        30 ~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~-~   92 (252)
                      +..+...+...+........+.+|||+|||+|  .+        +..+++.++ .++++|+                . +
T Consensus        26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G--~~--------~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~   94 (224)
T TIGR01983        26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGG--LL--------SEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLK   94 (224)
T ss_pred             hHHHHHHHHHHHHhcccCCCCCeEEEECCCCC--HH--------HHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence            33455555555543322345789999999999  65        556666654 5999998                1 4


Q ss_pred             eEEEEccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          93 LEVIQNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        93 i~~~~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +.+..+|+..++..  ++||+|++..+++++   .++..++..+.++|+|||.+++...
T Consensus        95 ~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983        95 IEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV---PDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             eEEEeCCHHHhhcCCCCCccEEEehhHHHhC---CCHHHHHHHHHHhcCCCcEEEEEec
Confidence            77888888777544  789999997765555   6778999999999999999998754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.13  E-value=1.2e-10  Score=98.93  Aligned_cols=97  Identities=12%  Similarity=0.039  Sum_probs=80.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCCCceeEE
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELPEKVDII  112 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~~~fDlI  112 (252)
                      ....+..+|.|||||+|..+-         ++..+.+...++|+|-            .+++|..+|+.++.....+|+|
T Consensus        26 Vp~~~~~~v~DLGCGpGnsTe---------lL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll   96 (257)
T COG4106          26 VPLERPRRVVDLGCGPGNSTE---------LLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL   96 (257)
T ss_pred             CCccccceeeecCCCCCHHHH---------HHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence            456677899999999994442         4444455578999998            7899999999999888899999


Q ss_pred             EecccccccCChhhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773         113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus       113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                      +++-+++++   ++-..+|.++...|.|||.|-+.-+....
T Consensus        97 faNAvlqWl---pdH~~ll~rL~~~L~Pgg~LAVQmPdN~d  134 (257)
T COG4106          97 FANAVLQWL---PDHPELLPRLVSQLAPGGVLAVQMPDNLD  134 (257)
T ss_pred             hhhhhhhhc---cccHHHHHHHHHhhCCCceEEEECCCccC
Confidence            999998888   66668999999999999999998876443

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.12  E-value=2e-10  Score=100.28  Aligned_cols=95  Identities=20%  Similarity=0.212  Sum_probs=75.8

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------------CceEEEEccccccCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------------~~i~~~~~d~~~~~~~  106 (252)
                      ......+|||+|||+|  .+        +++++.+ ...+++||++                  .+|+++++|+..+...
T Consensus        41 ~~~~~~~IlDlGaG~G--~l--------~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~  110 (248)
T COG4123          41 PVPKKGRILDLGAGNG--AL--------GLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA  110 (248)
T ss_pred             ccccCCeEEEecCCcC--HH--------HHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence            4445889999999999  77        7887776 4468999999                  7899999999999655


Q ss_pred             ---CceeEEEecccccccCCh---------------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 ---EKVDIIVSEWMGFYLLHE---------------SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ---~~fDlIv~~~~~~~l~~~---------------~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                         .+||+|+|++-.+-....               .++..+++.+.++|||||.+++..+.
T Consensus       111 ~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~  172 (248)
T COG4123         111 LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP  172 (248)
T ss_pred             ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence               569999997753322111               15889999999999999999988753

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.12  E-value=5.8e-10  Score=95.86  Aligned_cols=90  Identities=13%  Similarity=0.025  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------C------------------ceEEEEc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------L------------------ILEVIQN   98 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~------------------~i~~~~~   98 (252)
                      .++.+|||+|||.|  .-        +..++.+|. +|+|+|+           .                  +++++++
T Consensus        33 ~~~~rvLd~GCG~G--~d--------a~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  101 (213)
T TIGR03840        33 PAGARVFVPLCGKS--LD--------LAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCG  101 (213)
T ss_pred             CCCCeEEEeCCCch--hH--------HHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEc
Confidence            46789999999999  44        567778874 6999998           0                  3778999


Q ss_pred             cccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          99 KIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        99 d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |+.+++..  ++||+|+...+++++ .......++..+.++|+|||++++.+.
T Consensus       102 D~~~~~~~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       102 DFFALTAADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             cCCCCCcccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            99988753  679999986666665 445678899999999999998666544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.11  E-value=8.3e-10  Score=92.51  Aligned_cols=87  Identities=25%  Similarity=0.304  Sum_probs=65.5

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~d~~~~~~~  106 (252)
                      ....++.+|||+|||+|  .+        +..+++.++ .+++++|+                 .+++++.+|+. ...+
T Consensus        27 l~~~~~~~vLDiG~G~G--~~--------~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~   95 (187)
T PRK08287         27 LELHRAKHLIDVGAGTG--SV--------SIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP   95 (187)
T ss_pred             cCCCCCCEEEEECCcCC--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC
Confidence            34567889999999999  66        666666433 58999999                 35788888874 2334


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ++||+|++....      ..+..++..+.++|+|||++++..
T Consensus        96 ~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287         96 GKADAIFIGGSG------GNLTAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             cCCCEEEECCCc------cCHHHHHHHHHHhcCCCeEEEEEE
Confidence            689999985431      235678889999999999998864

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.11  E-value=6.6e-10  Score=99.59  Aligned_cols=86  Identities=24%  Similarity=0.303  Sum_probs=64.8

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~  108 (252)
                      ..++.+|||+|||+|  .+        +..+++.|+.+|+|+|+                  .++.+...+.... ..++
T Consensus       157 ~~~g~~VLDvGcGsG--~l--------ai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~  225 (288)
T TIGR00406       157 DLKDKNVIDVGCGSG--IL--------SIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGK  225 (288)
T ss_pred             cCCCCEEEEeCCChh--HH--------HHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCC
Confidence            457799999999999  77        77777888778999999                  1344555442221 2368


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ||+|+++.+.      ..+..++..+.++|+|||+|+++..
T Consensus       226 fDlVvan~~~------~~l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       226 ADVIVANILA------EVIKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             ceEEEEecCH------HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            9999996542      2456788999999999999999764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.10  E-value=6.6e-10  Score=99.58  Aligned_cols=91  Identities=11%  Similarity=0.001  Sum_probs=69.8

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-------------------CceEEEEccccccCCC-C
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-------------------LILEVIQNKIENVELP-E  107 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-------------------~~i~~~~~d~~~~~~~-~  107 (252)
                      ++++|+|||||.|..+-        ..+++... ..+++++|+                   .+++|..+|+.+.... +
T Consensus       123 ~p~~VldIGcGpgplta--------iilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~  194 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTS--------IVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLK  194 (296)
T ss_pred             CCCEEEEECCCCcHHHH--------HHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccC
Confidence            77999999999884433        33343332 246999998                   4699999999887533 7


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .||+|++. +++++. ..+...+|..+.+.|+|||+|++...
T Consensus       195 ~FDlVF~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        195 EYDVVFLA-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             CcCEEEEe-cccccc-cccHHHHHHHHHHhcCCCcEEEEecc
Confidence            89999997 544432 24788999999999999999999874

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.10  E-value=5.6e-10  Score=100.60  Aligned_cols=100  Identities=17%  Similarity=0.195  Sum_probs=75.0

Q ss_pred             HHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEccc
Q psy9773          39 AAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQNKI  100 (252)
Q Consensus        39 ~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~d~  100 (252)
                      ..+.......++.+|||||||+|  .+        +..+++..+ .+++++|.                 .+++++.+|+
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G--~~--------~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~  208 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIG--DI--------SAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDI  208 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchh--HH--------HHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCc
Confidence            33444345667789999999999  66        666666543 57999997                 4689999999


Q ss_pred             cccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         101 ENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       101 ~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ...+++. +|+|++..++|.. +......+|+++++.|+|||+|++....
T Consensus       209 ~~~~~~~-~D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d~~  256 (306)
T TIGR02716       209 YKESYPE-ADAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILDMV  256 (306)
T ss_pred             cCCCCCC-CCEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            8765554 7999886665543 3335678999999999999999988753

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.10  E-value=2.4e-10  Score=97.24  Aligned_cols=91  Identities=16%  Similarity=0.170  Sum_probs=66.8

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccc-cccC--CC-
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKI-ENVE--LP-  106 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~-~~~~--~~-  106 (252)
                      ++.+|||+|||+|  .+        +..++.. +..+++|+|+                 .++.++++|+ ..++  ++ 
T Consensus        40 ~~~~VLDiGcGtG--~~--------~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~  109 (202)
T PRK00121         40 DAPIHLEIGFGKG--EF--------LVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPD  109 (202)
T ss_pred             CCCeEEEEccCCC--HH--------HHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCc
Confidence            6789999999999  55        5555543 3357999999                 4688999999 6655  43 


Q ss_pred             CceeEEEecccccccC--Ch---hhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLL--HE---SMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~--~~---~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++||+|++.....+..  +.   .....++..+.++|+|||+|++...
T Consensus       110 ~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~  157 (202)
T PRK00121        110 GSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD  157 (202)
T ss_pred             cccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence            7899999854322111  11   0246789999999999999998764

>PRK14967 putative methyltransferase; Provisional

Probab=99.10  E-value=7.5e-10  Score=95.46  Aligned_cols=95  Identities=19%  Similarity=0.164  Sum_probs=68.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCce
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      ...++.+|||+|||+|  .+        +..++..++.+++++|+                .++.++.+|+......++|
T Consensus        33 ~~~~~~~vLDlGcG~G--~~--------~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~f  102 (223)
T PRK14967         33 GLGPGRRVLDLCTGSG--AL--------AVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPF  102 (223)
T ss_pred             ccCCCCeEEEecCCHH--HH--------HHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCe
Confidence            4567789999999999  66        66777766668999999                2467888888765333789


Q ss_pred             eEEEecccccccCC------------------hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGFYLLH------------------ESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~~------------------~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|+++.-......                  ...+..++..+.++|+|||++++....
T Consensus       103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            99999652111000                  012566888899999999999986544

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.10  E-value=2.7e-10  Score=95.59  Aligned_cols=89  Identities=20%  Similarity=0.181  Sum_probs=67.0

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccC--CC-CceeEE
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVE--LP-EKVDII  112 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~--~~-~~fDlI  112 (252)
                      -+.+|.||||||||.|  .+        ...+........+|+|+          ..++++++|+..--  ++ ++||.|
T Consensus        10 ~I~pgsrVLDLGCGdG--~L--------L~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~V   79 (193)
T PF07021_consen   10 WIEPGSRVLDLGCGDG--EL--------LAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYV   79 (193)
T ss_pred             HcCCCCEEEecCCCch--HH--------HHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEE
Confidence            3578999999999999  55        33344322356899999          77899999997762  44 899999


Q ss_pred             EecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |++.++..+   ..+..+|.++.   +-|...+++.++
T Consensus        80 IlsqtLQ~~---~~P~~vL~Eml---RVgr~~IVsFPN  111 (193)
T PF07021_consen   80 ILSQTLQAV---RRPDEVLEEML---RVGRRAIVSFPN  111 (193)
T ss_pred             ehHhHHHhH---hHHHHHHHHHH---HhcCeEEEEecC
Confidence            997776555   67888888875   446677777765

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.08  E-value=6.7e-10  Score=93.22  Aligned_cols=94  Identities=21%  Similarity=0.277  Sum_probs=67.1

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC------CceEEEEccccccC--------CC-C
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY------LILEVIQNKIENVE--------LP-E  107 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~------~~i~~~~~d~~~~~--------~~-~  107 (252)
                      ....++.+|||+|||+|  .+        +..++..  +..+++++|+      .++.++++|+.+..        .+ +
T Consensus        28 ~~i~~g~~VLDiG~GtG--~~--------~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPG--GW--------SQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             cccCCCCEEEEecCCCC--HH--------HHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence            56688999999999999  55        4444443  2347999999      36788888987643        23 6


Q ss_pred             ceeEEEeccccc----c-cCCh---hhHHHHHHHHhccccCCeEEEeec
Q psy9773         108 KVDIIVSEWMGF----Y-LLHE---SMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       108 ~fDlIv~~~~~~----~-l~~~---~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +||+|+++...+    + +.+.   .....++..+.++|+|||++++..
T Consensus        98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438        98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            799999854311    1 1111   134688999999999999999864

>PRK06202 hypothetical protein; Provisional

Probab=99.06  E-value=1.8e-09  Score=93.51  Aligned_cols=89  Identities=16%  Similarity=0.094  Sum_probs=64.2

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhh----cCC-CcEEEeeC--------------CceEEEEccccccCCC-
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK----VHP-LDHYAPQY--------------LILEVIQNKIENVELP-  106 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~----~g~-~~v~gvD~--------------~~i~~~~~d~~~~~~~-  106 (252)
                      ..++.+|||+|||+|  .+        +..++.    .|. .+++|+|+              .++.+...+...++.+ 
T Consensus        58 ~~~~~~iLDlGcG~G--~~--------~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~  127 (232)
T PRK06202         58 ADRPLTLLDIGCGGG--DL--------AIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEG  127 (232)
T ss_pred             CCCCcEEEEeccCCC--HH--------HHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccC
Confidence            356789999999999  44        444432    232 47999999              3466777776666554 


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ++||+|+++.+++++... .+..++..+.++++  |.+++..
T Consensus       128 ~~fD~V~~~~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d  166 (232)
T PRK06202        128 ERFDVVTSNHFLHHLDDA-EVVRLLADSAALAR--RLVLHND  166 (232)
T ss_pred             CCccEEEECCeeecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence            789999999888887443 46789999999998  4555444

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.05  E-value=1.5e-09  Score=96.44  Aligned_cols=83  Identities=12%  Similarity=0.192  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC----CCcEEEeeC------------CceEEEEccccccCCC-Ccee
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH----PLDHYAPQY------------LILEVIQNKIENVELP-EKVD  110 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g----~~~v~gvD~------------~~i~~~~~d~~~~~~~-~~fD  110 (252)
                      ..+.+|||+|||+|  .+        +..++...    ...++|+|+            .++.+.++|+.+++++ ++||
T Consensus        84 ~~~~~vLDiGcG~G--~~--------~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD  153 (272)
T PRK11088         84 EKATALLDIGCGEG--YY--------THALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLD  153 (272)
T ss_pred             CCCCeEEEECCcCC--HH--------HHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCcee
Confidence            35578999999999  44        44443321    136899999            5688999999998877 7899


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|++...    +      ..+.++.|+|+|||+|++..+.
T Consensus       154 ~I~~~~~----~------~~~~e~~rvLkpgG~li~~~p~  183 (272)
T PRK11088        154 AIIRIYA----P------CKAEELARVVKPGGIVITVTPG  183 (272)
T ss_pred             EEEEecC----C------CCHHHHHhhccCCCEEEEEeCC
Confidence            9988432    1      2356788999999999987654

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.05  E-value=1.4e-09  Score=92.82  Aligned_cols=90  Identities=21%  Similarity=0.226  Sum_probs=64.1

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKI  100 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~  100 (252)
                      +.......++.+|||+|||+|  ..        +..++.. + ..+|+++|+                  .+++++.+|.
T Consensus        64 ~~~~l~~~~~~~VLDiG~GsG--~~--------~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~  133 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTGSG--YQ--------AAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG  133 (205)
T ss_pred             HHHhcCCCCCCEEEEECcCcc--HH--------HHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc
Confidence            333345677899999999999  55        5455442 2 247999999                  2478899998


Q ss_pred             cccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         101 ENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       101 ~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ...... .+||+|++.....++         ...+.+.|+|||+|++...
T Consensus       134 ~~~~~~~~~fD~Ii~~~~~~~~---------~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        134 KRGLEKHAPFDAIIVTAAASTI---------PSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             ccCCccCCCccEEEEccCcchh---------hHHHHHhcCcCcEEEEEEc
Confidence            775433 789999996653332         2356788999999987543

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.05  E-value=2.3e-09  Score=91.89  Aligned_cols=87  Identities=22%  Similarity=0.109  Sum_probs=68.6

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~  108 (252)
                      ..++.+|||+|||+|  .+        +..++..+ .+++|+|+                  .++.+.++|+..++  ++
T Consensus        53 ~~~~~~vLDiGcG~G--~~--------~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~  119 (219)
T TIGR02021        53 PLKGKRVLDAGCGTG--LL--------SIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GE  119 (219)
T ss_pred             CCCCCEEEEEeCCCC--HH--------HHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CC
Confidence            456899999999999  66        66666665 47999999                  26889999988876  78


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      ||+|++..++++++ ...+..++.++.+++++++++.+.
T Consensus       120 fD~ii~~~~l~~~~-~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       120 FDIVVCMDVLIHYP-ASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             cCEEEEhhHHHhCC-HHHHHHHHHHHHHHhCCCEEEEEC
Confidence            99999976665553 345788999999999887777654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.04  E-value=1e-09  Score=94.63  Aligned_cols=88  Identities=13%  Similarity=0.026  Sum_probs=68.9

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------------------CceEEEE
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------------------LILEVIQ   97 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------------------~~i~~~~   97 (252)
                      ..++.+|||+|||.|+.          +..++..|. +|+|+|+                             .+|++++
T Consensus        35 ~~~~~rvL~~gCG~G~d----------a~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~  103 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLD----------MLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYC  103 (218)
T ss_pred             CCCCCeEEEeCCCChHh----------HHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEE
Confidence            35678999999999944          557777774 6999998                             1367789


Q ss_pred             ccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEe
Q psy9773          98 NKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYP  146 (252)
Q Consensus        98 ~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~  146 (252)
                      +|+.++...  +.||+|+-..+++++ .......++..+.++|+|||++++
T Consensus       104 ~D~~~l~~~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        104 GDFFALTAADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CcccCCCcccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence            999988644  689999987766666 445688999999999999987544

>PRK04266 fibrillarin; Provisional

Probab=99.04  E-value=1.9e-09  Score=93.49  Aligned_cols=89  Identities=22%  Similarity=0.235  Sum_probs=65.7

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------CceEEEEcccccc----C
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------LILEVIQNKIENV----E  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------~~i~~~~~d~~~~----~  104 (252)
                      ..+.++.+|||+|||+|  .+        +..+++. +..+|+|+|+               .++.++.+|+...    +
T Consensus        68 l~i~~g~~VlD~G~G~G--~~--------~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~  137 (226)
T PRK04266         68 FPIKKGSKVLYLGAASG--TT--------VSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAH  137 (226)
T ss_pred             CCCCCCCEEEEEccCCC--HH--------HHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhh
Confidence            56778999999999999  55        5566654 2247999999               3678889998752    2


Q ss_pred             CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ++.+||+|++...     .......++..+.++|||||+|++..
T Consensus       138 l~~~~D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~v  176 (226)
T PRK04266        138 VVEKVDVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLAI  176 (226)
T ss_pred             ccccCCEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            2367999986432     22233456889999999999999963

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.03  E-value=1.8e-09  Score=99.15  Aligned_cols=92  Identities=20%  Similarity=0.215  Sum_probs=68.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------------CceEEEEccccccCCCCcee
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------------LILEVIQNKIENVELPEKVD  110 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fD  110 (252)
                      ....+|||+|||+|  .+        +..+++.++ .+++++|+                ....++.+|+... .+++||
T Consensus       195 ~~~g~VLDlGCG~G--~l--------s~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-~~~~fD  263 (342)
T PRK09489        195 HTKGKVLDVGCGAG--VL--------SAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-IKGRFD  263 (342)
T ss_pred             cCCCeEEEeccCcC--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-cCCCcc
Confidence            34568999999999  77        777776543 57999999                1345667776543 347899


Q ss_pred             EEEecccccccC--ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         111 IIVSEWMGFYLL--HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       111 lIv~~~~~~~l~--~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|+|++.+|...  .......++..+.+.|+|||.|++..+.
T Consensus       264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            999988655422  2345789999999999999999987654

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.03  E-value=1.5e-09  Score=98.93  Aligned_cols=103  Identities=19%  Similarity=0.075  Sum_probs=76.5

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEcc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNK   99 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d   99 (252)
                      +...+.+.....++.+|||+|||||  .+        ...++..+ .+++|+|+                 .++.++++|
T Consensus       170 la~~~~~l~~~~~g~~vLDp~cGtG--~~--------lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D  238 (329)
T TIGR01177       170 LARAMVNLARVTEGDRVLDPFCGTG--GF--------LIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGD  238 (329)
T ss_pred             HHHHHHHHhCCCCcCEEEECCCCCC--HH--------HHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecc
Confidence            4445555456788899999999999  55        55555555 57999999                 336889999


Q ss_pred             ccccCCC-CceeEEEeccccccc---C---ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         100 IENVELP-EKVDIIVSEWMGFYL---L---HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~~~~-~~fDlIv~~~~~~~l---~---~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.+++.+ ++||+|++++.....   .   .......++..+.++|+|||++++..++
T Consensus       239 ~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~  296 (329)
T TIGR01177       239 ATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT  296 (329)
T ss_pred             hhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence            9998775 789999997532111   1   1123578999999999999999988765

This family is found exclusively in the Archaea.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.01  E-value=2.2e-09  Score=92.00  Aligned_cols=86  Identities=20%  Similarity=0.063  Sum_probs=63.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC-----------------CceEEEEccccccCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY-----------------LILEVIQNKIENVEL  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~-----------------~~i~~~~~d~~~~~~  105 (252)
                      ....++.+|||+|||+|  .+        +..+++...  .+|+++|+                 .++.++.+|+.....
T Consensus        73 l~~~~~~~VLDiG~GsG--~~--------a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~  142 (215)
T TIGR00080        73 LELKPGMKVLEIGTGSG--YQ--------AAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE  142 (215)
T ss_pred             hCCCCcCEEEEECCCcc--HH--------HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence            45678899999999999  65        556665422  35999998                 468899999876543


Q ss_pred             C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 ~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      . .+||+|++......         +...+.+.|+|||+|++...
T Consensus       143 ~~~~fD~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       143 PLAPYDRIYVTAAGPK---------IPEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             ccCCCCEEEEcCCccc---------ccHHHHHhcCcCcEEEEEEc
Confidence            3 68999998543222         23456788999999998654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.01  E-value=2.3e-09  Score=91.93  Aligned_cols=90  Identities=20%  Similarity=0.124  Sum_probs=64.8

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC-----------------CceEEEEcccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY-----------------LILEVIQNKIE  101 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~-----------------~~i~~~~~d~~  101 (252)
                      +.......++.+|||+|||+|  .+        +..+++. +. .+|+++|+                 .++.++++|..
T Consensus        68 ~~~~l~~~~g~~VLdIG~GsG--~~--------t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~  137 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGSG--YH--------AAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGT  137 (212)
T ss_pred             HHHHcCCCCcCEEEEECCccc--HH--------HHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence            333345678999999999999  55        5555553 22 47999999                 46899999987


Q ss_pred             ccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         102 NVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       102 ~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ....+ ++||+|++......         +...+.+.|+|||+|++...
T Consensus       138 ~~~~~~~~fD~I~~~~~~~~---------~~~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        138 LGYEENAPYDRIYVTAAGPD---------IPKPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             cCCCcCCCcCEEEECCCccc---------chHHHHHhhCCCcEEEEEEc
Confidence            66544 78999998543221         22345678999999988653

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.01  E-value=2.1e-09  Score=98.11  Aligned_cols=93  Identities=20%  Similarity=0.234  Sum_probs=65.9

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------------------CceEEEEccc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------------------LILEVIQNKI  100 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------------------~~i~~~~~d~  100 (252)
                      .++.+|||||||.|+.+.         -+ ...+...++|+|+                           -...|+.+|.
T Consensus        61 ~~~~~VLDl~CGkGGDL~---------Kw-~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~  130 (331)
T PF03291_consen   61 RPGLTVLDLCCGKGGDLQ---------KW-QKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADC  130 (331)
T ss_dssp             TTT-EEEEET-TTTTTHH---------HH-HHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTT
T ss_pred             CCCCeEEEecCCCchhHH---------HH-HhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccc
Confidence            378999999999997665         22 2234678999999                           2345677777


Q ss_pred             cccC------CC-CceeEEEecccccccC-ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         101 ENVE------LP-EKVDIIVSEWMGFYLL-HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       101 ~~~~------~~-~~fDlIv~~~~~~~l~-~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ....      .+ .+||+|-|..++|+.. .......+|..+...|+|||+|+.+.+.
T Consensus       131 f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  131 FSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             CCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             ccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence            5431      12 4899999988777665 5556778999999999999999988764

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.98  E-value=2.7e-09  Score=93.72  Aligned_cols=87  Identities=26%  Similarity=0.277  Sum_probs=59.9

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------CceEEEEc-cccccCCC-CceeEEEec
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------LILEVIQN-KIENVELP-EKVDIIVSE  115 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------~~i~~~~~-d~~~~~~~-~~fDlIv~~  115 (252)
                      ..++.+|||+|||+|  .+        +..+++.|+.+|+|+|+         .++..... +...+... .+||+|+++
T Consensus       117 ~~~~~~VLDiGcGsG--~l--------~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvan  186 (250)
T PRK00517        117 VLPGKTVLDVGCGSG--IL--------AIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVAN  186 (250)
T ss_pred             cCCCCEEEEeCCcHH--HH--------HHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEc
Confidence            467899999999999  77        77777777767999999         11110000 00111111 269999986


Q ss_pred             ccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       116 ~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ...      ..+..++..+.++|+|||+++++..
T Consensus       187 i~~------~~~~~l~~~~~~~LkpgG~lilsgi  214 (250)
T PRK00517        187 ILA------NPLLELAPDLARLLKPGGRLILSGI  214 (250)
T ss_pred             CcH------HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            431      2356788899999999999999754

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.98  E-value=3.6e-09  Score=89.56  Aligned_cols=91  Identities=20%  Similarity=0.223  Sum_probs=68.6

Q ss_pred             CCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEcccccc
Q psy9773          44 NPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENV  103 (252)
Q Consensus        44 ~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~  103 (252)
                      .....++.+|||+|||+|  .+        +..+++. + ..+|+++|+                  .++.++.+|+.+.
T Consensus        35 ~l~~~~~~~vlDlG~GtG--~~--------s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~  104 (198)
T PRK00377         35 KLRLRKGDMILDIGCGTG--SV--------TVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI  104 (198)
T ss_pred             HcCCCCcCEEEEeCCcCC--HH--------HHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence            356778899999999999  66        6666543 2 257999999                  3577888888764


Q ss_pred             CC--CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         104 EL--PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       104 ~~--~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..  .+.||+|++..      +...+..++..+.++|+|||++++....
T Consensus       105 l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (198)
T PRK00377        105 LFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAIL  147 (198)
T ss_pred             HhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeec
Confidence            22  26899998833      1245778999999999999999986543

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.98  E-value=1.7e-09  Score=91.47  Aligned_cols=92  Identities=14%  Similarity=0.126  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccC---CC-
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVE---LP-  106 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~---~~-  106 (252)
                      .+.+|||||||+|  .+        +..++.. +..+++|+|+                 .++.++++|+..+.   ++ 
T Consensus        16 ~~~~ilDiGcG~G--~~--------~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~   85 (194)
T TIGR00091        16 KAPLHLEIGCGKG--RF--------LIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPD   85 (194)
T ss_pred             CCceEEEeCCCcc--HH--------HHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCC
Confidence            4569999999999  55        4455553 3358999999                 47899999998753   33 


Q ss_pred             CceeEEEecccccccC--Chh---hHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLL--HES---MIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~--~~~---~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +++|.|++++...+..  |..   ....++..+.++|+|||.|++.+..
T Consensus        86 ~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~  134 (194)
T TIGR00091        86 GSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN  134 (194)
T ss_pred             CceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence            5899998854322110  100   1257899999999999999987643

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.96  E-value=4.4e-09  Score=76.61  Aligned_cols=84  Identities=25%  Similarity=0.259  Sum_probs=66.4

Q ss_pred             EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC--CCceeEE
Q psy9773          52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL--PEKVDII  112 (252)
Q Consensus        52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~--~~~fDlI  112 (252)
                      +|||+|||+|  .+        +..++..+..+++++|.                 .++.++.+|+.+...  .++||+|
T Consensus         1 ~ildig~G~G--~~--------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i   70 (107)
T cd02440           1 RVLDLGCGTG--AL--------ALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVI   70 (107)
T ss_pred             CeEEEcCCcc--HH--------HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEE
Confidence            5899999999  55        45555444568999998                 467888888888764  3789999


Q ss_pred             EecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773         113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      ++..+.+++  ......++..+.+.|+|||++++.
T Consensus        71 ~~~~~~~~~--~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          71 ISDPPLHHL--VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EEccceeeh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            997765542  467889999999999999999886

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.94  E-value=6.1e-09  Score=88.50  Aligned_cols=97  Identities=19%  Similarity=0.115  Sum_probs=62.1

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--CceEEEEccccccCCC-CceeE
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--LILEVIQNKIENVELP-EKVDI  111 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--~~i~~~~~d~~~~~~~-~~fDl  111 (252)
                      ..+.+.|   ....++..|.|+|||.+  .+        +....  ...+|...|.  .+-.++.+|+.++|++ +++|+
T Consensus        61 d~iI~~l---~~~~~~~viaD~GCGdA--~l--------a~~~~--~~~~V~SfDLva~n~~Vtacdia~vPL~~~svDv  125 (219)
T PF05148_consen   61 DVIIEWL---KKRPKSLVIADFGCGDA--KL--------AKAVP--NKHKVHSFDLVAPNPRVTACDIANVPLEDESVDV  125 (219)
T ss_dssp             HHHHHHH---CTS-TTS-EEEES-TT---HH--------HHH----S---EEEEESS-SSTTEEES-TTS-S--TT-EEE
T ss_pred             HHHHHHH---HhcCCCEEEEECCCchH--HH--------HHhcc--cCceEEEeeccCCCCCEEEecCccCcCCCCceeE
Confidence            4455555   34556689999999999  55        32221  1236999999  5556888999999998 89999


Q ss_pred             EEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|+...+-..    ++..++.++.|+|||||.|.+....
T Consensus       126 ~VfcLSLMGT----n~~~fi~EA~RvLK~~G~L~IAEV~  160 (219)
T PF05148_consen  126 AVFCLSLMGT----NWPDFIREANRVLKPGGILKIAEVK  160 (219)
T ss_dssp             EEEES---SS-----HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             EEEEhhhhCC----CcHHHHHHHHheeccCcEEEEEEec
Confidence            9985543332    7889999999999999999998765

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.94  E-value=8.2e-09  Score=86.27  Aligned_cols=94  Identities=20%  Similarity=0.139  Sum_probs=74.1

Q ss_pred             HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEcccc
Q psy9773          40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQNKIE  101 (252)
Q Consensus        40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~d~~  101 (252)
                      ..+......++.+++|+|||||  .+        +..++..++ .+|+|+|.                 +++.++.+++-
T Consensus        25 l~ls~L~~~~g~~l~DIGaGtG--si--------~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap   94 (187)
T COG2242          25 LTLSKLRPRPGDRLWDIGAGTG--SI--------TIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP   94 (187)
T ss_pred             HHHHhhCCCCCCEEEEeCCCcc--HH--------HHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch
Confidence            3333356789999999999999  66        666665444 58999997                 78999999998


Q ss_pred             ccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         102 NVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       102 ~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ....+ .+||.|+....       ..+..+|..+...|+|||+++....+
T Consensus        95 ~~L~~~~~~daiFIGGg-------~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          95 EALPDLPSPDAIFIGGG-------GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             HhhcCCCCCCEEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            77444 47999987332       46788999999999999999998765

>TIGR03438 probable methyltransferase

Probab=98.92  E-value=5.7e-09  Score=94.15  Aligned_cols=92  Identities=13%  Similarity=0.049  Sum_probs=62.5

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC------------------CceEEEEcccccc-CC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY------------------LILEVIQNKIENV-EL  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~------------------~~i~~~~~d~~~~-~~  105 (252)
                      ..++.+|||+|||||  ..        +..+++..  ..+++++|+                  .++.++++|+.+. +.
T Consensus        61 ~~~~~~iLELGcGtG--~~--------t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~  130 (301)
T TIGR03438        61 TGAGCELVELGSGSS--RK--------TRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL  130 (301)
T ss_pred             hCCCCeEEecCCCcc--hh--------HHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh
Confidence            346789999999999  54        44444442  257999999                  1355689999863 33


Q ss_pred             CCce----e-EEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 PEKV----D-IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 ~~~f----D-lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +..+    . ++++....++ ....+...+|+.+++.|+|||+|++...
T Consensus       131 ~~~~~~~~~~~~~~gs~~~~-~~~~e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       131 PPEPAAGRRLGFFPGSTIGN-FTPEEAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             hcccccCCeEEEEecccccC-CCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            3222    2 3333233333 3455788999999999999999998654

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PTZ00146 fibrillarin; Provisional

Probab=98.91  E-value=1.8e-08  Score=90.19  Aligned_cols=101  Identities=22%  Similarity=0.192  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhC---CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC---------------Cce
Q psy9773          34 NEAYRAAICDN---PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY---------------LIL   93 (252)
Q Consensus        34 ~~~~~~~l~~~---~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~---------------~~i   93 (252)
                      .+.+..+|..-   ..+.++.+|||||||+|  .+        +..++.. + ...|+++|+               .+|
T Consensus       114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G--~~--------t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI  183 (293)
T PTZ00146        114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASG--TT--------VSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNI  183 (293)
T ss_pred             ccHHHHHHHCCcceeccCCCCEEEEeCCcCC--HH--------HHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCC
Confidence            34455555332   35678899999999999  66        6666664 3 247999987               578


Q ss_pred             EEEEccccccC----CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          94 EVIQNKIENVE----LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        94 ~~~~~d~~~~~----~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .++.+|+....    +..+||+|+++..   .  ..+...++.++.++|||||.|++...
T Consensus       184 ~~I~~Da~~p~~y~~~~~~vDvV~~Dva---~--pdq~~il~~na~r~LKpGG~~vI~ik  238 (293)
T PTZ00146        184 VPIIEDARYPQKYRMLVPMVDVIFADVA---Q--PDQARIVALNAQYFLKNGGHFIISIK  238 (293)
T ss_pred             EEEECCccChhhhhcccCCCCEEEEeCC---C--cchHHHHHHHHHHhccCCCEEEEEEe
Confidence            89999986431    1267999999653   1  22445566678899999999999543

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.91  E-value=1.1e-08  Score=86.36  Aligned_cols=97  Identities=20%  Similarity=0.197  Sum_probs=67.9

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQN   98 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~   98 (252)
                      .+..+.......++.+|||+|||+|  .+        +..+++. +..+|+++|+                 .+++++.+
T Consensus        28 v~~~l~~~l~~~~~~~VLDiG~G~G--~~--------~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~   97 (196)
T PRK07402         28 VRLLLISQLRLEPDSVLWDIGAGTG--TI--------PVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG   97 (196)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCC--HH--------HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence            3333444445678899999999999  55        5555543 2358999999                 35788888


Q ss_pred             ccccc-C-CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          99 KIENV-E-LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        99 d~~~~-~-~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+... . ....+|.++...       ...+..++..+.++|+|||+|++....
T Consensus        98 d~~~~~~~~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402         98 SAPECLAQLAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             chHHHHhhCCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            88652 1 123467765421       135678999999999999999998764

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.90  E-value=1.3e-08  Score=86.99  Aligned_cols=88  Identities=16%  Similarity=0.081  Sum_probs=64.0

Q ss_pred             HhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccC
Q psy9773          42 CDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVE  104 (252)
Q Consensus        42 ~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~  104 (252)
                      .......++.+|||+|||+|  .+        +..++..+ .+++++|+                 .++.++.+|.....
T Consensus        71 ~~~l~~~~~~~VLeiG~GsG--~~--------t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  139 (212)
T PRK00312         71 TELLELKPGDRVLEIGTGSG--YQ--------AAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW  139 (212)
T ss_pred             HHhcCCCCCCEEEEECCCcc--HH--------HHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC
Confidence            33345678899999999999  55        55666654 47999998                 35889999986543


Q ss_pred             CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         105 LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       105 ~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .+ ++||+|++......         +...+.+.|+|||++++...
T Consensus       140 ~~~~~fD~I~~~~~~~~---------~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        140 PAYAPFDRILVTAAAPE---------IPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CcCCCcCEEEEccCchh---------hhHHHHHhcCCCcEEEEEEc
Confidence            33 78999998553222         23456789999999998764

>PRK14968 putative methyltransferase; Provisional

Probab=98.89  E-value=1.4e-08  Score=84.23  Aligned_cols=92  Identities=24%  Similarity=0.262  Sum_probs=67.1

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------Cc--eEEEEccccccCCCCc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LI--LEVIQNKIENVELPEK  108 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~--i~~~~~d~~~~~~~~~  108 (252)
                      .++.+|||+|||+|  .+        +..++..+ .+++++|+                 .+  +.++++|+.+...+++
T Consensus        22 ~~~~~vLd~G~G~G--~~--------~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   90 (188)
T PRK14968         22 KKGDRVLEVGTGSG--IV--------AIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDK   90 (188)
T ss_pred             cCCCEEEEEccccC--HH--------HHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccC
Confidence            67789999999999  56        66666664 67999999                 11  7788888766543468


Q ss_pred             eeEEEeccccccc------------------CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         109 VDIIVSEWMGFYL------------------LHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       109 fDlIv~~~~~~~l------------------~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ||+|+++......                  .+...+..++..+.++|+|||.+++..++
T Consensus        91 ~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~  150 (188)
T PRK14968         91 FDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS  150 (188)
T ss_pred             ceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            9999986532110                  01223567899999999999999887654

>KOG3045|consensus

Probab=98.89  E-value=1.5e-08  Score=88.29  Aligned_cols=87  Identities=22%  Similarity=0.234  Sum_probs=68.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--CceEEEEccccccCCC-CceeEEEecccccccC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--LILEVIQNKIENVELP-EKVDIIVSEWMGFYLL  122 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~  122 (252)
                      .......|.|+|||-+  .+        +.   +. ..+|++.|+  .+-+++.+|+.++|++ ++.|++|+...+-   
T Consensus       177 ~r~~~~vIaD~GCGEa--ki--------A~---~~-~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLM---  239 (325)
T KOG3045|consen  177 RRPKNIVIADFGCGEA--KI--------AS---SE-RHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLM---  239 (325)
T ss_pred             hCcCceEEEecccchh--hh--------hh---cc-ccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhh---
Confidence            3456679999999999  43        21   22 357999999  6677899999999988 8999998844322   


Q ss_pred             ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         123 HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       123 ~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      . .++..++.+++|+|+|||.+++....
T Consensus       240 g-tn~~df~kEa~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  240 G-TNLADFIKEANRILKPGGLLYIAEVK  266 (325)
T ss_pred             c-ccHHHHHHHHHHHhccCceEEEEehh
Confidence            2 37889999999999999999998754

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.89  E-value=2e-08  Score=87.39  Aligned_cols=97  Identities=18%  Similarity=0.168  Sum_probs=74.0

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC----------CceEEEEccccccCCCCce
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY----------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~----------~~i~~~~~d~~~~~~~~~f  109 (252)
                      +..........+|+|||+|+|  .+        +..+++. +..+++..|.          .+++++.+|+. .++|. +
T Consensus        92 ~~~~~d~~~~~~vvDvGGG~G--~~--------~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~-~  159 (241)
T PF00891_consen   92 LLEAFDFSGFKTVVDVGGGSG--HF--------AIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV-A  159 (241)
T ss_dssp             HHHHSTTTTSSEEEEET-TTS--HH--------HHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS-E
T ss_pred             hhccccccCccEEEeccCcch--HH--------HHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc-c
Confidence            333345556679999999999  55        5555553 3357999999          79999999999 66666 9


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCC--eEEEeeccc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPE--GVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~Lkpg--G~lv~~~~~  150 (252)
                      |+|+..+++|... ..+...+|+++++.|+||  |+|++....
T Consensus       160 D~~~l~~vLh~~~-d~~~~~iL~~~~~al~pg~~g~llI~e~~  201 (241)
T PF00891_consen  160 DVYLLRHVLHDWS-DEDCVKILRNAAAALKPGKDGRLLIIEMV  201 (241)
T ss_dssp             SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred             cceeeehhhhhcc-hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence            9999999888764 447899999999999999  999998865

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG2899|consensus

Probab=98.88  E-value=3.5e-09  Score=91.42  Aligned_cols=93  Identities=17%  Similarity=0.236  Sum_probs=64.9

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC---------------------------------
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY---------------------------------   90 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~---------------------------------   90 (252)
                      ...+.+..+|||||.+|  .+        +..+++ .++..+.|+||                                 
T Consensus        54 ~~~f~~~~~LDIGCNsG--~l--------t~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~  123 (288)
T KOG2899|consen   54 KDWFEPKQALDIGCNSG--FL--------TLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQ  123 (288)
T ss_pred             ccccCcceeEeccCCcc--hh--------HHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccc
Confidence            45577889999999999  77        777777 67788999999                                 


Q ss_pred             --------------------------CceEEEEccccccCCCCceeEEEecccccc--cC-ChhhHHHHHHHHhccccCC
Q psy9773          91 --------------------------LILEVIQNKIENVELPEKVDIIVSEWMGFY--LL-HESMIDSVIFARDKFLKPE  141 (252)
Q Consensus        91 --------------------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~--l~-~~~~~~~~l~~l~~~Lkpg  141 (252)
                                                .++.+...|+... ....||+|+|..+.-+  +. +..-+..+|+++.++|.||
T Consensus       124 ~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pg  202 (288)
T KOG2899|consen  124 FGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPG  202 (288)
T ss_pred             cccccccccccccccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcC
Confidence                                      0111111111100 1157999999443322  22 4456899999999999999


Q ss_pred             eEEEeec
Q psy9773         142 GVMYPYK  148 (252)
Q Consensus       142 G~lv~~~  148 (252)
                      |+|++.-
T Consensus       203 GiLvvEP  209 (288)
T KOG2899|consen  203 GILVVEP  209 (288)
T ss_pred             cEEEEcC
Confidence            9999864

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.88  E-value=6.3e-09  Score=87.70  Aligned_cols=80  Identities=18%  Similarity=0.240  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccc-c-CCC-CceeEEEe
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIEN-V-ELP-EKVDIIVS  114 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~-~-~~~-~~fDlIv~  114 (252)
                      .++.+|||+|||+|  .+        +..++......++|+|+          .++.++++|+.. + +++ ++||+|++
T Consensus        12 ~~~~~iLDiGcG~G--~~--------~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~   81 (194)
T TIGR02081        12 PPGSRVLDLGCGDG--EL--------LALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVIL   81 (194)
T ss_pred             CCCCEEEEeCCCCC--HH--------HHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEE
Confidence            46789999999999  55        44554443356899998          467889999876 3 233 78999999


Q ss_pred             cccccccCChhhHHHHHHHHhccccC
Q psy9773         115 EWMGFYLLHESMIDSVIFARDKFLKP  140 (252)
Q Consensus       115 ~~~~~~l~~~~~~~~~l~~l~~~Lkp  140 (252)
                      +.+++++   .++..++.++.+.+++
T Consensus        82 ~~~l~~~---~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        82 SQTLQAT---RNPEEILDEMLRVGRH  104 (194)
T ss_pred             hhHhHcC---cCHHHHHHHHHHhCCe
Confidence            8876666   6677888888776554

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.87  E-value=1.3e-08  Score=94.45  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=66.1

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEcccccc--CCC-
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENV--ELP-  106 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~--~~~-  106 (252)
                      ..+.++||||||+|  .+        ...++.. +...++|+|+                 .++.++++|+..+  .++ 
T Consensus       121 ~~~p~vLEIGcGsG--~~--------ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~  190 (390)
T PRK14121        121 NQEKILIEIGFGSG--RH--------LLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS  190 (390)
T ss_pred             CCCCeEEEEcCccc--HH--------HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC
Confidence            45679999999999  44        4455553 3368999999                 5899999999765  233 


Q ss_pred             CceeEEEecccccccCChhh------HHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLLHESM------IDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~------~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +++|.|+++..   .+|...      ...++..+.|+|+|||.+.+.+-
T Consensus       191 ~s~D~I~lnFP---dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD  236 (390)
T PRK14121        191 NSVEKIFVHFP---VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD  236 (390)
T ss_pred             CceeEEEEeCC---CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence            88999988543   222221      25789999999999999998764

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.86  E-value=1.9e-08  Score=90.09  Aligned_cols=92  Identities=22%  Similarity=0.215  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------CceEEEEccccccCCCCce
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      ++.+|||+|||+|  .+        +..++... ..+++|+|+                  .++.++++|+......++|
T Consensus       121 ~~~~vLDlG~GsG--~i--------~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~f  190 (284)
T TIGR03533       121 PVKRILDLCTGSG--CI--------AIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKY  190 (284)
T ss_pred             CCCEEEEEeCchh--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCc
Confidence            4579999999999  55        55666543 357999999                  3588999998654323579


Q ss_pred             eEEEeccccc----------ccCCh------------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGF----------YLLHE------------SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~----------~l~~~------------~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|++++-..          ...++            .....++..+.++|+|||++++....
T Consensus       191 D~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~  253 (284)
T TIGR03533       191 DLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN  253 (284)
T ss_pred             cEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            9999964210          00111            12467888899999999999988764

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.84  E-value=3e-08  Score=86.15  Aligned_cols=91  Identities=23%  Similarity=0.140  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccCCCCcee
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVELPEKVD  110 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~fD  110 (252)
                      .+.+|||+|||+|  .+        +..++.. +..+++|+|+                 .++.++++|+......++||
T Consensus        87 ~~~~ilDig~G~G--~~--------~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD  156 (251)
T TIGR03534        87 GPLRVLDLGTGSG--AI--------ALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFD  156 (251)
T ss_pred             CCCeEEEEeCcHh--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCcee
Confidence            4569999999999  55        4555553 2358999998                 35889999987643347899


Q ss_pred             EEEeccccccc------C-----C------------hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         111 IIVSEWMGFYL------L-----H------------ESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       111 lIv~~~~~~~l------~-----~------------~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +|++++.....      .     +            ...+..++..+.++|+|||.+++...
T Consensus       157 ~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~  218 (251)
T TIGR03534       157 LIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG  218 (251)
T ss_pred             EEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            99996532210      0     0            01234788899999999999998753

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.84  E-value=2.3e-08  Score=88.28  Aligned_cols=106  Identities=20%  Similarity=0.119  Sum_probs=70.9

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEE
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEV   95 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~   95 (252)
                      +..+...+.......++.+|||+|||+|  .+        +..++... ..+++|+|+                 .++.+
T Consensus        93 te~l~~~~~~~~~~~~~~~vLDiG~GsG--~~--------~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~  162 (275)
T PRK09328         93 TEELVEWALEALLLKEPLRVLDLGTGSG--AI--------ALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEF  162 (275)
T ss_pred             cHHHHHHHHHhccccCCCEEEEEcCcHH--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEE
Confidence            3444444443334556789999999999  55        45555533 357999998                 26888


Q ss_pred             EEccccccCCCCceeEEEeccccccc------C-----------------ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          96 IQNKIENVELPEKVDIIVSEWMGFYL------L-----------------HESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        96 ~~~d~~~~~~~~~fDlIv~~~~~~~l------~-----------------~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +.+|+.....+++||+|++++-....      .                 ....+..++..+.++|+|||++++...
T Consensus       163 ~~~d~~~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g  239 (275)
T PRK09328        163 LQGDWFEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG  239 (275)
T ss_pred             EEccccCcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            99988654334789999995421100      0                 012346788888899999999999653

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.84  E-value=9.1e-10  Score=94.41  Aligned_cols=125  Identities=18%  Similarity=0.170  Sum_probs=78.2

Q ss_pred             hhhHhhhhccHHHHHHHhccHHH-HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEee
Q psy9773          11 EEEYFESYTDLEVHKLMLDDTVR-NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQ   89 (252)
Q Consensus        11 ~~~yf~~y~~~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD   89 (252)
                      ..-.|+.|...=-+...-+=... ...+...|.. ....+=+++||+|||||  +.        ...+... +.+++|+|
T Consensus        87 Ve~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTG--L~--------G~~lR~~-a~~ltGvD  154 (287)
T COG4976          87 VETLFDQYAERFDHILVDKLGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTG--LT--------GEALRDM-ADRLTGVD  154 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHh-ccCCccceeeecccCcC--cc--------cHhHHHH-HhhccCCc
Confidence            44577777763222211110111 2333443432 33333479999999999  76        5555544 35678888


Q ss_pred             C------------CceEEEEccccccC---CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          90 Y------------LILEVIQNKIENVE---LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        90 ~------------~~i~~~~~d~~~~~---~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +            .--++.++++..+.   .+.+||+|++..++.++   ..+..++..+..+|+|||.|.|+.-+
T Consensus       155 iS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl---G~Le~~~~~aa~~L~~gGlfaFSvE~  227 (287)
T COG4976         155 ISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYL---GALEGLFAGAAGLLAPGGLFAFSVET  227 (287)
T ss_pred             hhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhh---cchhhHHHHHHHhcCCCceEEEEecc
Confidence            7            11123444544332   23789999998876666   88999999999999999999998754

>KOG1271|consensus

Probab=98.84  E-value=9.4e-09  Score=85.44  Aligned_cols=91  Identities=20%  Similarity=0.224  Sum_probs=63.5

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCC-cEEEeeC------------------CceEEEEccccccCC-CCcee
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPL-DHYAPQY------------------LILEVIQNKIENVEL-PEKVD  110 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~-~v~gvD~------------------~~i~~~~~d~~~~~~-~~~fD  110 (252)
                      .+|||||||.|  .+        ...+++-|.. ..+|+|.                  +.|+|.+.|+.+..+ ++.||
T Consensus        69 ~~VlDLGtGNG--~~--------L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfd  138 (227)
T KOG1271|consen   69 DRVLDLGTGNG--HL--------LFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFD  138 (227)
T ss_pred             cceeeccCCch--HH--------HHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCccccccee
Confidence            49999999999  66        4445555543 3777776                  349999999998644 37788


Q ss_pred             EEEecccccccC-----ChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773         111 IIVSEWMGFYLL-----HESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus       111 lIv~~~~~~~l~-----~~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                      +|+--..+..+.     ....+...+..+.++|+|||+|++.+++.
T Consensus       139 lvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~  184 (227)
T KOG1271|consen  139 LVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF  184 (227)
T ss_pred             EEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence            886533221111     11234667888899999999999998763

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.83  E-value=1.8e-08  Score=85.82  Aligned_cols=90  Identities=12%  Similarity=0.091  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC--CCc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL--PEK  108 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~--~~~  108 (252)
                      ..+.+|||+|||+|  .+        ++.++..++.+|+++|.                 .++.++++|+.....  ..+
T Consensus        52 ~~~~~vLDl~~GsG--~l--------~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~  121 (199)
T PRK10909         52 IVDARCLDCFAGSG--AL--------GLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTP  121 (199)
T ss_pred             cCCCEEEEcCCCcc--HH--------HHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCC
Confidence            56789999999999  77        66555556778999998                 468899999876432  256


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHh--ccccCCeEEEeecccc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARD--KFLKPEGVMYPYKCIL  151 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~--~~LkpgG~lv~~~~~~  151 (252)
                      ||+|++++- +.-   .....++..+.  .+|+|+|++|+++...
T Consensus       122 fDlV~~DPP-y~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        122 HNVVFVDPP-FRK---GLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             ceEEEECCC-CCC---ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            999999875 211   22334444443  4589999999998763

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=2.7e-08  Score=88.88  Aligned_cols=102  Identities=22%  Similarity=0.162  Sum_probs=71.4

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQN   98 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~   98 (252)
                      -.+.|+.......+.+|||+|||.|  .+        +..+++..+ .+++.+|+                 .+..++..
T Consensus       146 GS~lLl~~l~~~~~~~vlDlGCG~G--vl--------g~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s  215 (300)
T COG2813         146 GSRLLLETLPPDLGGKVLDLGCGYG--VL--------GLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWAS  215 (300)
T ss_pred             HHHHHHHhCCccCCCcEEEeCCCcc--HH--------HHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe
Confidence            3444555455555669999999999  88        888887654 68999999                 22234555


Q ss_pred             cccccCCCCceeEEEecccccccCChh--hHHHHHHHHhccccCCeEEEeecc
Q psy9773          99 KIENVELPEKVDIIVSEWMGFYLLHES--MIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        99 d~~~~~~~~~fDlIv~~~~~~~l~~~~--~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |+..--. ++||+|+|++-+|--....  -..+++....+.|++||.|.+...
T Consensus       216 ~~~~~v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         216 NLYEPVE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             ccccccc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            5544333 4899999988654322111  245899999999999999998775

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.81  E-value=2.9e-08  Score=89.83  Aligned_cols=90  Identities=19%  Similarity=0.234  Sum_probs=64.5

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------CceEEEEccccccCCCCceeE
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------LILEVIQNKIENVELPEKVDI  111 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~fDl  111 (252)
                      .+|||+|||+|  .+        +..++... ..+|+++|+                  .++.++++|+.+...+++||+
T Consensus       135 ~~VLDlG~GsG--~i--------ai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDl  204 (307)
T PRK11805        135 TRILDLCTGSG--CI--------AIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDL  204 (307)
T ss_pred             CEEEEEechhh--HH--------HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccE
Confidence            68999999999  55        55555543 357999999                  358899999865433368999


Q ss_pred             EEeccccc----------ccCCh------------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         112 IVSEWMGF----------YLLHE------------SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       112 Iv~~~~~~----------~l~~~------------~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |++++-..          ...+.            .....++..+.++|+|||++++....
T Consensus       205 IvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~  265 (307)
T PRK11805        205 IVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN  265 (307)
T ss_pred             EEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            99964110          00011            13467889999999999999997653

>PHA03411 putative methyltransferase; Provisional

Probab=98.81  E-value=3.7e-08  Score=87.40  Aligned_cols=103  Identities=17%  Similarity=0.072  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------CceEEEEccccccCCCCceeEEEec
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------LILEVIQNKIENVELPEKVDIIVSE  115 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------~~i~~~~~d~~~~~~~~~fDlIv~~  115 (252)
                      .+.+|||+|||+|  .+        +..++.. +..+++++|+            .++.++++|+..+....+||+|+++
T Consensus        64 ~~grVLDLGcGsG--il--------sl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsN  133 (279)
T PHA03411         64 CTGKVLDLCAGIG--RL--------SFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISN  133 (279)
T ss_pred             cCCeEEEcCCCCC--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEc
Confidence            4579999999999  65        5555443 2358999999            4688999999987655789999997


Q ss_pred             ccccccCChh--h---------------HHHHHHHHhccccCCeEEEeecc--ccccCCCCChhH
Q psy9773         116 WMGFYLLHES--M---------------IDSVIFARDKFLKPEGVMYPYKC--ILHSAPSYSPEI  161 (252)
Q Consensus       116 ~~~~~l~~~~--~---------------~~~~l~~l~~~LkpgG~lv~~~~--~~~~~~~~~~~~  161 (252)
                      +..+++....  .               +..++.....+|+|+|.+++...  .+|........+
T Consensus       134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y  198 (279)
T PHA03411        134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKY  198 (279)
T ss_pred             CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHH
Confidence            7654432211  1               35677778899999998866432  334444444443

>PRK00811 spermidine synthase; Provisional

Probab=98.81  E-value=1.5e-08  Score=90.67  Aligned_cols=93  Identities=15%  Similarity=0.041  Sum_probs=67.1

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC----------------------CceEEEEccccccC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY----------------------LILEVIQNKIENVE  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~----------------------~~i~~~~~d~~~~~  104 (252)
                      ..+++||+||||+|  .+        +..+++. +..+|+++|+                      ++++++.+|...+.
T Consensus        75 ~~p~~VL~iG~G~G--~~--------~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l  144 (283)
T PRK00811         75 PNPKRVLIIGGGDG--GT--------LREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV  144 (283)
T ss_pred             CCCCEEEEEecCch--HH--------HHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH
Confidence            45689999999999  55        5555554 4568999999                      35788999987763


Q ss_pred             C--CCceeEEEecccccccCChh-hHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 L--PEKVDIIVSEWMGFYLLHES-MIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~--~~~fDlIv~~~~~~~l~~~~-~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .  .++||+|++.......+... ....++..+.+.|+|||++++...+
T Consensus       145 ~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~  193 (283)
T PRK00811        145 AETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS  193 (283)
T ss_pred             hhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            2  37899999965322221111 2367788999999999999987554

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.81  E-value=6.7e-08  Score=82.91  Aligned_cols=85  Identities=13%  Similarity=0.097  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~  108 (252)
                      ..++.+|||+|||+|  .+        +..++..+. .++|+|+                  .++.+..+|+...  .++
T Consensus        61 ~~~~~~vLDvGcG~G--~~--------~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~  127 (230)
T PRK07580         61 DLTGLRILDAGCGVG--SL--------SIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGR  127 (230)
T ss_pred             CCCCCEEEEEeCCCC--HH--------HHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCC
Confidence            456789999999999  55        566666664 5999998                  2578888884332  378


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEE
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMY  145 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv  145 (252)
                      ||+|++..++++++ .+.+..++..+.+++++++++.
T Consensus       128 fD~v~~~~~l~~~~-~~~~~~~l~~l~~~~~~~~~i~  163 (230)
T PRK07580        128 FDTVVCLDVLIHYP-QEDAARMLAHLASLTRGSLIFT  163 (230)
T ss_pred             cCEEEEcchhhcCC-HHHHHHHHHHHHhhcCCeEEEE
Confidence            99999977765543 3367788888888775555443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.81  E-value=3.5e-08  Score=88.24  Aligned_cols=90  Identities=26%  Similarity=0.276  Sum_probs=64.3

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------------CceEEEEccccccCCCCceeE
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------------LILEVIQNKIENVELPEKVDI  111 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------------~~i~~~~~d~~~~~~~~~fDl  111 (252)
                      .+|||+|||+|  .+        +..++...+ .+++|+|+                  .++.++++|+.......+||+
T Consensus       116 ~~vLDlG~GsG--~i--------~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDl  185 (284)
T TIGR00536       116 LHILDLGTGSG--CI--------ALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDI  185 (284)
T ss_pred             CEEEEEeccHh--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccE
Confidence            69999999999  55        555555432 57999999                  248899999876432248999


Q ss_pred             EEecccc----------cccCCh------------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         112 IVSEWMG----------FYLLHE------------SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       112 Iv~~~~~----------~~l~~~------------~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |++++-.          ....+.            ..+..++..+.++|+|||+|++....
T Consensus       186 IvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~  246 (284)
T TIGR00536       186 IVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN  246 (284)
T ss_pred             EEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence            9996311          000111            14667888899999999999998764

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.80  E-value=1.3e-08  Score=101.70  Aligned_cols=93  Identities=17%  Similarity=0.084  Sum_probs=71.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccC--CC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVE--LP  106 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~--~~  106 (252)
                      .++++|||+|||||  .+        ++.++..|+.+|+++|+                   .+++++++|+.++.  ..
T Consensus       537 ~~g~rVLDlf~gtG--~~--------sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~  606 (702)
T PRK11783        537 AKGKDFLNLFAYTG--TA--------SVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAR  606 (702)
T ss_pred             cCCCeEEEcCCCCC--HH--------HHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcC
Confidence            45789999999999  77        77888888878999999                   25889999987653  23


Q ss_pred             CceeEEEeccccccc--------CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYL--------LHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l--------~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++||+||+++-.+.-        ....+...++..+.++|+|||+++++++.
T Consensus       607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            689999996632211        11235677888889999999999987765

>PHA03412 putative methyltransferase; Provisional

Probab=98.79  E-value=3.3e-08  Score=85.93  Aligned_cols=91  Identities=14%  Similarity=0.083  Sum_probs=65.3

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhc----CCCcEEEeeC------------CceEEEEccccccCCCCceeEE
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV----HPLDHYAPQY------------LILEVIQNKIENVELPEKVDII  112 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~----g~~~v~gvD~------------~~i~~~~~d~~~~~~~~~fDlI  112 (252)
                      .+.+|||+|||+|  .+        +..+++.    +..+++++|+            .++.++.+|+....+.++||+|
T Consensus        49 ~~grVLDlG~GSG--~L--------alala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlI  118 (241)
T PHA03412         49 TSGSVVDLCAGIG--GL--------SFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMA  118 (241)
T ss_pred             CCCEEEEccChHH--HH--------HHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEE
Confidence            3679999999999  66        5555442    2347999999            4578999999877666789999


Q ss_pred             EecccccccCC---------hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         113 VSEWMGFYLLH---------ESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       113 v~~~~~~~l~~---------~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |+++-.+-+..         ......++..+.++++||+.+++...
T Consensus       119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~  164 (241)
T PHA03412        119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS  164 (241)
T ss_pred             EECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence            99775331211         11255688888888888888776543

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.79  E-value=3.9e-08  Score=91.99  Aligned_cols=107  Identities=19%  Similarity=0.093  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC----------------Cce
Q psy9773          31 TVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------------LIL   93 (252)
Q Consensus        31 ~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------------~~i   93 (252)
                      ++.+..+...+..  ...++.+|||+|||+|  .+        +..++. .+..+++|+|+                .++
T Consensus       235 RpeTE~LVe~aL~--~l~~~~rVLDLGcGSG--~I--------aiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV  302 (423)
T PRK14966        235 RPETEHLVEAVLA--RLPENGRVWDLGTGSG--AV--------AVTVALERPDAFVRASDISPPALETARKNAADLGARV  302 (423)
T ss_pred             CccHHHHHHHhhh--ccCCCCEEEEEeChhh--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcE
Confidence            3445555555543  2345679999999999  55        555554 33467999999                368


Q ss_pred             EEEEccccccCC--CCceeEEEecccccccC-----------------------ChhhHHHHHHHHhccccCCeEEEeec
Q psy9773          94 EVIQNKIENVEL--PEKVDIIVSEWMGFYLL-----------------------HESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        94 ~~~~~d~~~~~~--~~~fDlIv~~~~~~~l~-----------------------~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .++++|+.+...  .++||+|+|++-. .-.                       ....+..++..+.+.|+|||.+++..
T Consensus       303 ~fi~gDl~e~~l~~~~~FDLIVSNPPY-I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi  381 (423)
T PRK14966        303 EFAHGSWFDTDMPSEGKWDIIVSNPPY-IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH  381 (423)
T ss_pred             EEEEcchhccccccCCCccEEEECCCC-CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            899999876533  2679999997631 100                       00124577777789999999998876


Q ss_pred             cc
Q psy9773         149 CI  150 (252)
Q Consensus       149 ~~  150 (252)
                      ..
T Consensus       382 G~  383 (423)
T PRK14966        382 GF  383 (423)
T ss_pred             Cc
Confidence            43

>KOG2361|consensus

Probab=98.79  E-value=2.1e-08  Score=86.58  Aligned_cols=92  Identities=25%  Similarity=0.293  Sum_probs=66.8

Q ss_pred             EEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------------CceEEEEccccccCC-----CCce
Q psy9773          52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------------LILEVIQNKIENVEL-----PEKV  109 (252)
Q Consensus        52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------------~~i~~~~~d~~~~~~-----~~~f  109 (252)
                      +||++|||.|.+.+        .++...... -+++++|.                .++.....|+.....     ++++
T Consensus        74 ~ilEvGCGvGNtvf--------Pll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~sv  145 (264)
T KOG2361|consen   74 TILEVGCGVGNTVF--------PLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSV  145 (264)
T ss_pred             hheeeccCCCcccc--------hhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCcc
Confidence            89999999997666        444333221 46999999                344445556544421     1889


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      |+|++..++..++ ...+..++.+++++|||||.|++.....+
T Consensus       146 D~it~IFvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~~  187 (264)
T KOG2361|consen  146 DIITLIFVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGRY  187 (264)
T ss_pred             ceEEEEEEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence            9999977766664 44688999999999999999999876433

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.78  E-value=5.2e-08  Score=91.96  Aligned_cols=98  Identities=18%  Similarity=0.148  Sum_probs=69.1

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------------CceEEEEccccccCC---
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------------LILEVIQNKIENVEL---  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------------~~i~~~~~d~~~~~~---  105 (252)
                      ...+|.+|||+|||+|  ..        +..++..+. .+|+++|+                .++.++++|+..+..   
T Consensus       241 ~~~~g~~VLDlgaG~G--~~--------t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~  310 (427)
T PRK10901        241 APQNGERVLDACAAPG--GK--------TAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWD  310 (427)
T ss_pred             CCCCCCEEEEeCCCCC--hH--------HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcc
Confidence            4568899999999999  55        555555433 57999999                246789999987632   


Q ss_pred             CCceeEEEecccccc---c---------CChhh-------HHHHHHHHhccccCCeEEEeecccccc
Q psy9773         106 PEKVDIIVSEWMGFY---L---------LHESM-------IDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~---l---------~~~~~-------~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                      .++||.|+++.....   +         .+..+       ...+|..+.++|+|||+|+.++++.+.
T Consensus       311 ~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~  377 (427)
T PRK10901        311 GQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP  377 (427)
T ss_pred             cCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            267999997442111   1         11111       246899999999999999998876443

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=4e-08  Score=85.68  Aligned_cols=94  Identities=23%  Similarity=0.270  Sum_probs=78.4

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC------------------CceEEEEccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY------------------LILEVIQNKI  100 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~------------------~~i~~~~~d~  100 (252)
                      |.....+.+|.+|||.|.|+|  .+        +..+++ .|. .+|+.+|+                  +++++..+|+
T Consensus        86 I~~~~gi~pg~rVlEAGtGSG--~l--------t~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv  155 (256)
T COG2519          86 IVARLGISPGSRVLEAGTGSG--AL--------TAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV  155 (256)
T ss_pred             HHHHcCCCCCCEEEEcccCch--HH--------HHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc
Confidence            444468999999999999999  77        677665 343 58999999                  5588899999


Q ss_pred             cccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         101 ENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       101 ~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      .+...+..||.|+...        +++..++..+.++|+|||.+++..++..
T Consensus       156 ~~~~~~~~vDav~LDm--------p~PW~~le~~~~~Lkpgg~~~~y~P~ve  199 (256)
T COG2519         156 REGIDEEDVDAVFLDL--------PDPWNVLEHVSDALKPGGVVVVYSPTVE  199 (256)
T ss_pred             cccccccccCEEEEcC--------CChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence            9988778999997743        6899999999999999999999988643

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.77  E-value=2e-08  Score=85.93  Aligned_cols=90  Identities=19%  Similarity=0.104  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC-Ccee
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP-EKVD  110 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~-~~fD  110 (252)
                      ...+.||+|||.|+.+-          -+....+..|-.+|.                 ...++.+..++++.++ ++||
T Consensus        55 ~~~~alDcGAGIGRVTk----------~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YD  124 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTK----------GLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYD  124 (218)
T ss_dssp             --SEEEEET-TTTHHHH----------HTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EE
T ss_pred             CcceEEecccccchhHH----------HHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEe
Confidence            34799999999995543          332223567888887                 2356888899998765 7999


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +|++.|++.|+.+. ++..+|.++...|+|+|++++-.+
T Consensus       125 lIW~QW~lghLTD~-dlv~fL~RCk~~L~~~G~IvvKEN  162 (218)
T PF05891_consen  125 LIWIQWCLGHLTDE-DLVAFLKRCKQALKPNGVIVVKEN  162 (218)
T ss_dssp             EEEEES-GGGS-HH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEehHhhccCCHH-HHHHHHHHHHHhCcCCcEEEEEec
Confidence            99999999998655 799999999999999999998665

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.77  E-value=2.1e-09  Score=101.33  Aligned_cols=150  Identities=14%  Similarity=0.258  Sum_probs=93.9

Q ss_pred             HHHHHHHHhCCCC--CCC--CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------CceEE--------
Q psy9773          35 EAYRAAICDNPNI--FAG--KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------LILEV--------   95 (252)
Q Consensus        35 ~~~~~~l~~~~~~--~~~--~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------~~i~~--------   95 (252)
                      ..|...|......  ..|  +++||+|||+|  ++        +..+..++   |+.+-+       ..++|        
T Consensus        99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~a--SF--------~a~l~~r~---V~t~s~a~~d~~~~qvqfaleRGvpa  165 (506)
T PF03141_consen   99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVA--SF--------GAYLLERN---VTTMSFAPNDEHEAQVQFALERGVPA  165 (506)
T ss_pred             HHHHHHHHHHhhccccCCceEEEEeccceee--hh--------HHHHhhCC---ceEEEcccccCCchhhhhhhhcCcch
Confidence            3444444443333  223  57899999999  77        66666654   333333       11222        


Q ss_pred             EEcc--ccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCCCChhH-----------
Q psy9773          96 IQNK--IENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI-----------  161 (252)
Q Consensus        96 ~~~d--~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~~~~-----------  161 (252)
                      +.+-  ...+|++ ++||+|+|.-  +.+.+...-..+|.++.|+|+|||+++.+.+..+..  .....           
T Consensus       166 ~~~~~~s~rLPfp~~~fDmvHcsr--c~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r--~~~~~~~~~~~~~~l~  241 (506)
T PF03141_consen  166 MIGVLGSQRLPFPSNAFDMVHCSR--CLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQR--TDEDLEEEWNAMEDLA  241 (506)
T ss_pred             hhhhhccccccCCccchhhhhccc--ccccchhcccceeehhhhhhccCceEEecCCccccc--chHHHHHHHHHHHHHH
Confidence            2122  3566777 8999999944  334555555678999999999999999999886611  11112           


Q ss_pred             -HHHhhhhhCCccccchhHHhhhhhhhHHHHHHhh-hhhhHHHHHh
Q psy9773         162 -FKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKK-NKEEEEEEEE  205 (252)
Q Consensus       162 -~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  205 (252)
                       .-.|..+.--+    .-.++.+|...+|+.+++. ..++.|++.+
T Consensus       242 ~~lCW~~va~~~----~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~  283 (506)
T PF03141_consen  242 KSLCWKKVAEKG----DTAIWQKPTNNSCYQKRKPGKSPPLCDSSD  283 (506)
T ss_pred             HHHHHHHheeeC----CEEEEeccCCchhhhhccCCCCCCCCCCCC
Confidence             22343332211    1447888998899999887 8899997543

; GO: 0008168 methyltransferase activity

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.77  E-value=2.1e-08  Score=93.76  Aligned_cols=95  Identities=16%  Similarity=0.141  Sum_probs=69.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------C--ceEEEEccccccCC---
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------L--ILEVIQNKIENVEL---  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~--~i~~~~~d~~~~~~---  105 (252)
                      .++++|||+|||+|  .+        ++.++..|+.+|+++|+                 .  +++++++|+.++..   
T Consensus       219 ~~g~rVLDlfsgtG--~~--------~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~  288 (396)
T PRK15128        219 VENKRVLNCFSYTG--GF--------AVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYR  288 (396)
T ss_pred             cCCCeEEEeccCCC--HH--------HHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHH
Confidence            45789999999999  55        55555566778999999                 1  57899999987631   


Q ss_pred             --CCceeEEEecccccccCCh-------hhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773         106 --PEKVDIIVSEWMGFYLLHE-------SMIDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus       106 --~~~fDlIv~~~~~~~l~~~-------~~~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                        .++||+|++++-. +....       ..+..++..+.++|+|||+|+..+++.+.
T Consensus       289 ~~~~~fDlVilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~  344 (396)
T PRK15128        289 DRGEKFDVIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM  344 (396)
T ss_pred             hcCCCCCEEEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence              2579999997643 22222       23556666778999999999987765444

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.77  E-value=6e-08  Score=92.05  Aligned_cols=97  Identities=23%  Similarity=0.244  Sum_probs=68.8

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY-----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~  106 (252)
                      ...+|.+|||+|||+|+  .        +..++..  +..+|+|+|+                 .++.++++|+..+..+
T Consensus       247 ~~~~g~~VLDlgaG~G~--k--------t~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~  316 (445)
T PRK14904        247 NPQPGSTVLDLCAAPGG--K--------STFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPE  316 (445)
T ss_pred             CCCCCCEEEEECCCCCH--H--------HHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccC
Confidence            45678999999999994  4        4444432  2247999999                 4688999999887645


Q ss_pred             CceeEEEecccc---cccC---------Chhh-------HHHHHHHHhccccCCeEEEeeccccc
Q psy9773         107 EKVDIIVSEWMG---FYLL---------HESM-------IDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       107 ~~fDlIv~~~~~---~~l~---------~~~~-------~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      ++||+|++..-.   ..+.         ...+       ...+|..+.++|+|||+|+.++++..
T Consensus       317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            789999973211   1110         1111       23689999999999999999988744

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.77  E-value=4.4e-08  Score=92.58  Aligned_cols=97  Identities=14%  Similarity=0.155  Sum_probs=69.1

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC-----------------CceEEEEccccccC--
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY-----------------LILEVIQNKIENVE--  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~-----------------~~i~~~~~d~~~~~--  104 (252)
                      ...+|.+|||+|||+|+.+          ..++..  +..+|+++|+                 .++.++++|+..++  
T Consensus       234 ~~~~g~~VLD~cagpGgkt----------~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~  303 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKT----------TAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY  303 (431)
T ss_pred             CCCCCCEEEEeCCCccHHH----------HHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh
Confidence            4678899999999999544          344432  2357999999                 45789999998775  


Q ss_pred             CCCceeEEEecccc---cccCChh----------------hHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         105 LPEKVDIIVSEWMG---FYLLHES----------------MIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       105 ~~~~fDlIv~~~~~---~~l~~~~----------------~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      ..++||.|+++.-.   ..+...+                ....+|..+.++|+|||+++.++++..
T Consensus       304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  370 (431)
T PRK14903        304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT  370 (431)
T ss_pred             hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            23789999984321   1111111                125678899999999999999988743

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=4.5e-08  Score=83.37  Aligned_cols=89  Identities=17%  Similarity=0.088  Sum_probs=66.8

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEcccccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENV  103 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~  103 (252)
                      +.......++.+||+||||+|  ..        +-.+++.. .+|++++.                 .++.+.++|-..-
T Consensus        64 m~~~L~~~~g~~VLEIGtGsG--Y~--------aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G  132 (209)
T COG2518          64 MLQLLELKPGDRVLEIGTGSG--YQ--------AAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG  132 (209)
T ss_pred             HHHHhCCCCCCeEEEECCCch--HH--------HHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC
Confidence            333356889999999999999  55        66777764 48999998                 5799999999877


Q ss_pred             CCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         104 ELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       104 ~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ..+ .+||.|+.......+   +  .    .+.+.|+|||+|++-..
T Consensus       133 ~~~~aPyD~I~Vtaaa~~v---P--~----~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         133 WPEEAPYDRIIVTAAAPEV---P--E----ALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCCCcCEEEEeeccCCC---C--H----HHHHhcccCCEEEEEEc
Confidence            555 899999884432222   2  2    23577899999997665

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.76  E-value=2.6e-08  Score=86.79  Aligned_cols=90  Identities=17%  Similarity=0.061  Sum_probs=66.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCC--
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVEL--  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~--  105 (252)
                      ...++++|||+|||+|..++        ++..+..+..+++++|+                  .+++++.+|+.+...  
T Consensus        65 ~~~~~~~vLEiGt~~G~s~l--------~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l  136 (234)
T PLN02781         65 KIMNAKNTLEIGVFTGYSLL--------TTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL  136 (234)
T ss_pred             HHhCCCEEEEecCcccHHHH--------HHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence            45668899999999996555        33333333458999999                  578999999976511  


Q ss_pred             -----CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 -----PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 -----~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                           .++||+|++...      .+....++..+.++|+|||++++...
T Consensus       137 ~~~~~~~~fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~  179 (234)
T PLN02781        137 LNNDPKPEFDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNT  179 (234)
T ss_pred             HhCCCCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence                 258999987432      24566788888999999999998764

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.74  E-value=6.4e-08  Score=91.56  Aligned_cols=97  Identities=16%  Similarity=0.189  Sum_probs=68.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC-----------------CceEEEEccccccC--
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY-----------------LILEVIQNKIENVE--  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~-----------------~~i~~~~~d~~~~~--  104 (252)
                      ...+|.+|||+|||+|+  .        +..++.. + ..+|+++|+                 .++.++++|+..++  
T Consensus       249 ~~~~g~~VLDl~ag~G~--k--------t~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~  318 (434)
T PRK14901        249 DPQPGEVILDACAAPGG--K--------TTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL  318 (434)
T ss_pred             CCCCcCEEEEeCCCCch--h--------HHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence            45678999999999994  4        4444442 2 247999999                 46889999998775  


Q ss_pred             --C-CCceeEEEecccc---cccCChhh----------------HHHHHHHHhccccCCeEEEeeccccc
Q psy9773         105 --L-PEKVDIIVSEWMG---FYLLHESM----------------IDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       105 --~-~~~fDlIv~~~~~---~~l~~~~~----------------~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                        . .++||.|+++.-.   ..+...++                ...+|..+.++|+|||+|+.++++++
T Consensus       319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~  388 (434)
T PRK14901        319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH  388 (434)
T ss_pred             cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence              2 2689999984311   11111111                35789999999999999998887744

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.74  E-value=3.4e-08  Score=85.26  Aligned_cols=90  Identities=18%  Similarity=0.128  Sum_probs=70.7

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------------------CceEEE
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------------------LILEVI   96 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------------------~~i~~~   96 (252)
                      ...++.+||..|||.|..          ...++..| .+|+|+|+                             .+|++.
T Consensus        34 ~~~~~~rvLvPgCG~g~D----------~~~La~~G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~  102 (218)
T PF05724_consen   34 ALKPGGRVLVPGCGKGYD----------MLWLAEQG-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY  102 (218)
T ss_dssp             TTSTSEEEEETTTTTSCH----------HHHHHHTT-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred             CCCCCCeEEEeCCCChHH----------HHHHHHCC-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence            456778999999999943          45666777 47999998                             467899


Q ss_pred             EccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773          97 QNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus        97 ~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      ++|+.+++..  ++||+|+=...++.+ +..........+.++|+|||.+++.
T Consensus       103 ~gDfF~l~~~~~g~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~lLi  154 (218)
T PF05724_consen  103 CGDFFELPPEDVGKFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGLLI  154 (218)
T ss_dssp             ES-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred             EcccccCChhhcCCceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEEEE
Confidence            9999998765  689999987766665 4557899999999999999994433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.73  E-value=7.1e-08  Score=79.60  Aligned_cols=90  Identities=20%  Similarity=0.209  Sum_probs=65.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCCC-Cc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVELP-EK  108 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~~-~~  108 (252)
                      ....++.+|||+|||+|  .+        +..+++.+ .+++++|+               .+++++++|+..++.+ ..
T Consensus         9 ~~~~~~~~vLEiG~G~G--~l--------t~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~   77 (169)
T smart00650        9 ANLRPGDTVLEIGPGKG--AL--------TEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ   77 (169)
T ss_pred             cCCCCcCEEEEECCCcc--HH--------HHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence            45567789999999999  66        66777764 67999999               3688999999998776 46


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ||+|+++.- +++ ..+.+..++...  .+.++|.+++...
T Consensus        78 ~d~vi~n~P-y~~-~~~~i~~~l~~~--~~~~~~~l~~q~e  114 (169)
T smart00650       78 PYKVVGNLP-YNI-STPILFKLLEEP--PAFRDAVLMVQKE  114 (169)
T ss_pred             CCEEEECCC-ccc-HHHHHHHHHhcC--CCcceEEEEEEHH
Confidence            999998653 333 123344444432  2458999988764

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.73  E-value=7.2e-08  Score=83.56  Aligned_cols=91  Identities=10%  Similarity=-0.101  Sum_probs=73.4

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------------------CceEEEEc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------------------LILEVIQN   98 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------------------~~i~~~~~   98 (252)
                      .++.+||..|||.|..          ...++..|. +|+|+|+                             .+++++++
T Consensus        42 ~~~~rvLvPgCGkg~D----------~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g  110 (226)
T PRK13256         42 NDSSVCLIPMCGCSID----------MLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVA  110 (226)
T ss_pred             CCCCeEEEeCCCChHH----------HHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEc
Confidence            4678999999999944          457777774 5999998                             26789999


Q ss_pred             cccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          99 KIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        99 d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+.+++..    +.||+|+-..+++.+ +.....+.+..+.++|+|||.++.....
T Consensus       111 D~f~l~~~~~~~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        111 DIFNLPKIANNLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             cCcCCCccccccCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence            99999642    689999987776766 4557889999999999999999877653

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.72  E-value=8.1e-08  Score=81.59  Aligned_cols=95  Identities=13%  Similarity=0.150  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhh----cC--CCcEEEeeC--------------------------------
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTK----VH--PLDHYAPQY--------------------------------   90 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~----~g--~~~v~gvD~--------------------------------   90 (252)
                      ..-+|+..||+||.-.-      .+++.+..    ..  ..+++|+|+                                
T Consensus        31 ~~lrIWSagCStGeE~Y------SlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~  104 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPY------SLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTE  104 (196)
T ss_dssp             S-EEEEETT-TTTHHHH------HHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEE
T ss_pred             CCeEEEECCCCCChhHH------HHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccc
Confidence            45799999999996333      11333333    11  137999999                                


Q ss_pred             -------------CceEEEEccccc-cCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          91 -------------LILEVIQNKIEN-VELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        91 -------------~~i~~~~~d~~~-~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                                   .+|.|.+.|+.+ .+..+.||+|+|..++-++ +......++..+++.|+|||+|++....
T Consensus       105 ~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~sE  177 (196)
T PF01739_consen  105 RDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGHSE  177 (196)
T ss_dssp             E-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred             cCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence                         789999999999 3333899999999987776 4556789999999999999999998764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.72  E-value=3.7e-08  Score=84.49  Aligned_cols=89  Identities=19%  Similarity=0.140  Sum_probs=58.6

Q ss_pred             HhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC-----------------CceEEEEccccc
Q psy9773          42 CDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY-----------------LILEVIQNKIEN  102 (252)
Q Consensus        42 ~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~-----------------~~i~~~~~d~~~  102 (252)
                      .....+.+|.+|||||||+|  ..        +..++.. +. ..|+++|+                 .++.++++|...
T Consensus        65 l~~L~l~pg~~VLeIGtGsG--Y~--------aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~  134 (209)
T PF01135_consen   65 LEALDLKPGDRVLEIGTGSG--YQ--------AALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE  134 (209)
T ss_dssp             HHHTTC-TT-EEEEES-TTS--HH--------HHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred             HHHHhcCCCCEEEEecCCCc--HH--------HHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence            33355889999999999999  55        5555553 33 25899998                 578999999876


Q ss_pred             cCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         103 VELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       103 ~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .... .+||.|++...   ....  +    ..+.+.|++||+|++-..
T Consensus       135 g~~~~apfD~I~v~~a---~~~i--p----~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  135 GWPEEAPFDRIIVTAA---VPEI--P----EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             TTGGG-SEEEEEESSB---BSS--------HHHHHTEEEEEEEEEEES
T ss_pred             ccccCCCcCEEEEeec---cchH--H----HHHHHhcCCCcEEEEEEc
Confidence            5433 78999998544   2211  2    224567899999998654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.72  E-value=8.4e-08  Score=84.98  Aligned_cols=97  Identities=19%  Similarity=0.139  Sum_probs=67.5

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY-----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~~~  106 (252)
                      ...+|.+|||+|||+|  ..        +..++. .+ ...|+++|+                 .++.+++.|+..++..
T Consensus        68 ~~~~g~~VLDl~ag~G--~k--------t~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~  137 (264)
T TIGR00446        68 EPDPPERVLDMAAAPG--GK--------TTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA  137 (264)
T ss_pred             CCCCcCEEEEECCCch--HH--------HHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh
Confidence            4578899999999999  44        444443 22 247999999                 4678888998776543


Q ss_pred             -CceeEEEecccccc---cCCh---------h-------hHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         107 -EKVDIIVSEWMGFY---LLHE---------S-------MIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       107 -~~fDlIv~~~~~~~---l~~~---------~-------~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                       +.||+|+++.-...   +...         .       ....+|..+.++|+|||+|+.+++++.
T Consensus       138 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~  203 (264)
T TIGR00446       138 VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE  203 (264)
T ss_pred             ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence             67999998432111   1111         1       124588999999999999998887643

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.71  E-value=1.4e-07  Score=83.10  Aligned_cols=92  Identities=15%  Similarity=0.147  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC--------------CceEEEEccccccCC---CCcee
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY--------------LILEVIQNKIENVEL---PEKVD  110 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~--------------~~i~~~~~d~~~~~~---~~~fD  110 (252)
                      .+.+|||+|||+|  .+        ++.++.. +..+++++|+              .+++++++|+.+...   .++||
T Consensus        86 ~~~~vLDlg~GsG--~i--------~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fD  155 (251)
T TIGR03704        86 GTLVVVDLCCGSG--AV--------GAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVD  155 (251)
T ss_pred             CCCEEEEecCchH--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEe
Confidence            3468999999999  66        5555543 3357999999              346789999876422   25799


Q ss_pred             EEEecccccc------cC-----C------------hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         111 IIVSEWMGFY------LL-----H------------ESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       111 lIv~~~~~~~------l~-----~------------~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|++++-..-      +.     +            ...+..++..+.++|+|||++++....
T Consensus       156 lVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~  218 (251)
T TIGR03704       156 ILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE  218 (251)
T ss_pred             EEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            9999763210      00     0            012457888888999999999988653

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>KOG1975|consensus

Probab=98.71  E-value=4.6e-08  Score=87.73  Aligned_cols=96  Identities=22%  Similarity=0.201  Sum_probs=73.6

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------------CceEEEEcccc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------------LILEVIQNKIE  101 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------------~~i~~~~~d~~  101 (252)
                      ....++..+|+||||-|+.++        -..  +.|...++|+||                       -.+.|+.+|..
T Consensus       113 ~y~~~~~~~~~LgCGKGGDLl--------Kw~--kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~  182 (389)
T KOG1975|consen  113 LYTKRGDDVLDLGCGKGGDLL--------KWD--KAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF  182 (389)
T ss_pred             HHhccccccceeccCCcccHh--------Hhh--hhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence            445778899999999998776        333  445568999999                       24678999986


Q ss_pred             cc------CCC-CceeEEEecccccccC-ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         102 NV------ELP-EKVDIIVSEWMGFYLL-HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       102 ~~------~~~-~~fDlIv~~~~~~~l~-~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .-      +++ .+||+|=|..++|+.. .......+|.++.+.|+|||+|+.+.|.
T Consensus       183 ~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd  239 (389)
T KOG1975|consen  183 KERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD  239 (389)
T ss_pred             hhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence            44      223 3499999977766553 5557888999999999999999988874

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.71  E-value=8.4e-08  Score=87.15  Aligned_cols=84  Identities=21%  Similarity=0.176  Sum_probs=59.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------C--------ceEEEEccccccCC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------L--------ILEVIQNKIENVEL  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~--------~i~~~~~d~~~~~~  105 (252)
                      .++.+|||+|||+|  .+        +..+++.| .+|+|+|+              .        ++.|..+|+..+  
T Consensus       143 ~~~~~VLDlGcGtG--~~--------a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--  209 (315)
T PLN02585        143 LAGVTVCDAGCGTG--SL--------AIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--  209 (315)
T ss_pred             CCCCEEEEecCCCC--HH--------HHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--
Confidence            46789999999999  66        66777776 47999999              1        256777777554  


Q ss_pred             CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEe
Q psy9773         106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYP  146 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~  146 (252)
                      .++||+|+|..+++|++.. ....++..+.+ +.+||+++.
T Consensus       210 ~~~fD~Vv~~~vL~H~p~~-~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        210 SGKYDTVTCLDVLIHYPQD-KADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             CCCcCEEEEcCEEEecCHH-HHHHHHHHHHh-hcCCEEEEE
Confidence            3789999998776665433 34566777654 466666553

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.70  E-value=7.5e-08  Score=91.31  Aligned_cols=97  Identities=18%  Similarity=0.173  Sum_probs=68.6

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC-----------------CceEEEEccccccC--
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY-----------------LILEVIQNKIENVE--  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~-----------------~~i~~~~~d~~~~~--  104 (252)
                      ...++.+|||+|||+|  ..        +..++..  +..+++++|+                 .++.++++|+..+.  
T Consensus       247 ~~~~g~~VLDlgaG~G--~~--------t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~  316 (444)
T PRK14902        247 DPKGGDTVLDACAAPG--GK--------TTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK  316 (444)
T ss_pred             CCCCCCEEEEeCCCCC--HH--------HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch
Confidence            4567889999999999  54        4455543  2357999999                 35889999998764  


Q ss_pred             CCCceeEEEecccccc---cCC---------hhh-------HHHHHHHHhccccCCeEEEeeccccc
Q psy9773         105 LPEKVDIIVSEWMGFY---LLH---------ESM-------IDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~---l~~---------~~~-------~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      ++++||+|+++.-...   +.+         ..+       ...+|..+.++|+|||+|+.++++.+
T Consensus       317 ~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~  383 (444)
T PRK14902        317 FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE  383 (444)
T ss_pred             hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence            2378999998542111   111         111       14578999999999999998877644

>PRK04457 spermidine synthase; Provisional

Probab=98.69  E-value=7.1e-08  Score=85.43  Aligned_cols=92  Identities=15%  Similarity=0.133  Sum_probs=65.8

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------------CceEEEEccccccC--C
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------------LILEVIQNKIENVE--L  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------------~~i~~~~~d~~~~~--~  105 (252)
                      ...+++|||||||+|  .+        +..++.. +..+++++|+                  .+++++.+|+..+-  .
T Consensus        64 ~~~~~~vL~IG~G~G--~l--------~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~  133 (262)
T PRK04457         64 NPRPQHILQIGLGGG--SL--------AKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH  133 (262)
T ss_pred             CCCCCEEEEECCCHh--HH--------HHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence            345689999999999  66        5555543 3357999999                  46888999987652  2


Q ss_pred             CCceeEEEecccc-cccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         106 PEKVDIIVSEWMG-FYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       106 ~~~fDlIv~~~~~-~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +++||+|+++... ...+..-....++..+.+.|+|||++++..
T Consensus       134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~  177 (262)
T PRK04457        134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL  177 (262)
T ss_pred             CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence            3689999985421 111111123689999999999999999854

>KOG1541|consensus

Probab=98.68  E-value=5.1e-08  Score=83.30  Aligned_cols=92  Identities=14%  Similarity=0.061  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccc-cCCC-CceeEEE
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIEN-VELP-EKVDIIV  113 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~-~~~~-~~fDlIv  113 (252)
                      ..+.-|||||||||  +-        +..+...| ...+|+|+            -.-.++.+|+.. +|++ ++||.+|
T Consensus        49 ~~~~~iLDIGCGsG--LS--------g~vL~~~G-h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~I  117 (270)
T KOG1541|consen   49 PKSGLILDIGCGSG--LS--------GSVLSDSG-HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVI  117 (270)
T ss_pred             CCCcEEEEeccCCC--cc--------hheeccCC-ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEE
Confidence            35678999999999  55        44444455 56778887            123578888863 3555 8999999


Q ss_pred             ecccccccCChh--------hHHHHHHHHhccccCCeEEEeeccc
Q psy9773         114 SEWMGFYLLHES--------MIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       114 ~~~~~~~l~~~~--------~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +..+..++-|..        .+..++..++..|++|++.++....
T Consensus       118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp  162 (270)
T KOG1541|consen  118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP  162 (270)
T ss_pred             EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence            955544443221        4667888899999999999998753

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.68  E-value=3.5e-08  Score=82.43  Aligned_cols=118  Identities=24%  Similarity=0.348  Sum_probs=93.6

Q ss_pred             HHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------
Q psy9773          22 EVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------   90 (252)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------   90 (252)
                      +||...+.|..|...+..++.+..    ...+.|+|+|+|  .+        +..++.. +.+|++++.           
T Consensus         9 ~yh~~LL~D~eRlavF~~ai~~va----~d~~~DLGaGsG--iL--------s~~Aa~~-A~rViAiE~dPk~a~~a~eN   73 (252)
T COG4076           9 SYHLDLLRDVERLAVFTSAIAEVA----EDTFADLGAGSG--IL--------SVVAAHA-AERVIAIEKDPKRARLAEEN   73 (252)
T ss_pred             hhHhhhhhhHHHHHHHHHHHHHHh----hhceeeccCCcc--hH--------HHHHHhh-hceEEEEecCcHHHHHhhhc
Confidence            467788888899999999987533    378999999999  98        8888877 689999988           


Q ss_pred             ------CceEEEEccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCC
Q psy9773          91 ------LILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPS  156 (252)
Q Consensus        91 ------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~  156 (252)
                            .++.++.+|+.+..+ ...|+|+|.+....+..+ ....+++++...|+-++.+++........+.
T Consensus        74 ~~v~g~~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi~E-~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv  143 (252)
T COG4076          74 LHVPGDVNWEVVVGDARDYDF-ENADVVICEMLDTALIEE-KQVPVINAVLEFLRYDPTIIPQEVRIGANPV  143 (252)
T ss_pred             CCCCCCcceEEEecccccccc-cccceeHHHHhhHHhhcc-cccHHHHHHHHHhhcCCccccHHHhhccCcc
Confidence                  678999999999988 578999996655444444 3456778888899999999988654444443

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.66  E-value=1.8e-07  Score=85.21  Aligned_cols=85  Identities=18%  Similarity=0.026  Sum_probs=60.4

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC-----------------CceEEEEccccccCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY-----------------LILEVIQNKIENVEL  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~-----------------~~i~~~~~d~~~~~~  105 (252)
                      ....++.+|||+|||+|  .+        +..+++...  ..|+++|+                 .++.++++|......
T Consensus        76 L~i~~g~~VLDIG~GtG--~~--------a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~  145 (322)
T PRK13943         76 VGLDKGMRVLEIGGGTG--YN--------AAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP  145 (322)
T ss_pred             cCCCCCCEEEEEeCCcc--HH--------HHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc
Confidence            45678899999999999  55        556655322  35999998                 368889999876644


Q ss_pred             C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         106 P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       106 ~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      . ++||+|++...   ..      .+...+.+.|+|||++++..
T Consensus       146 ~~~~fD~Ii~~~g---~~------~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        146 EFAPYDVIFVTVG---VD------EVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             ccCCccEEEECCc---hH------HhHHHHHHhcCCCCEEEEEe
Confidence            4 67999998532   21      12234567899999988753

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.65  E-value=8.9e-08  Score=89.08  Aligned_cols=98  Identities=18%  Similarity=0.117  Sum_probs=78.2

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccCCC--
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVELP--  106 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~~~--  106 (252)
                      ..|++||++.|-||  .+        |..++..|+.+|++||.                   .++.++++|+..+-..  
T Consensus       216 ~~GkrvLNlFsYTG--gf--------Sv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~  285 (393)
T COG1092         216 AAGKRVLNLFSYTG--GF--------SVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAE  285 (393)
T ss_pred             ccCCeEEEecccCc--HH--------HHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHH
Confidence            33999999999999  77        88999999989999999                   5578999999887432  


Q ss_pred             ---CceeEEEecccccccC------ChhhHHHHHHHHhccccCCeEEEeeccccccCC
Q psy9773         107 ---EKVDIIVSEWMGFYLL------HESMIDSVIFARDKFLKPEGVMYPYKCILHSAP  155 (252)
Q Consensus       107 ---~~fDlIv~~~~~~~l~------~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~  155 (252)
                         .+||+||+.+-.+.-.      -..+...++..+.++|+|||++++++++.+...
T Consensus       286 ~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~  343 (393)
T COG1092         286 RRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSS  343 (393)
T ss_pred             hcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCH
Confidence               4899999976543211      123677888999999999999999988754433

>KOG3010|consensus

Probab=98.65  E-value=6.7e-08  Score=83.56  Aligned_cols=85  Identities=15%  Similarity=0.180  Sum_probs=61.1

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------Cc-------eEEEEccccccCC-CCceeE
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LI-------LEVIQNKIENVEL-PEKVDI  111 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~-------i~~~~~d~~~~~~-~~~fDl  111 (252)
                      +.++|+|||+|  .-        +..++.+ .++|+|+|+           .+       .+....++.++.- ++++|+
T Consensus        35 ~~a~DvG~G~G--qa--------~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDl  103 (261)
T KOG3010|consen   35 RLAWDVGTGNG--QA--------ARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDL  103 (261)
T ss_pred             ceEEEeccCCC--cc--------hHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceee
Confidence            38999999999  33        4456665 588999999           22       2233333333432 389999


Q ss_pred             EEecccccccCChhhHHHHHHHHhccccCCe-EEEeeccc
Q psy9773         112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEG-VMYPYKCI  150 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG-~lv~~~~~  150 (252)
                      |+|..+.|++    ++..+.+.+.|+||+.| ++.+....
T Consensus       104 I~~Aqa~HWF----dle~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  104 ITAAQAVHWF----DLERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             ehhhhhHHhh----chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            9998887877    78999999999999755 77666543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.64  E-value=1e-07  Score=91.79  Aligned_cols=91  Identities=20%  Similarity=0.138  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC------------------CceEEEEccccccCCCCce
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY------------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      ++.+|||+|||+|  .+        +..++. .+..+|+|+|+                  .++.++++|+......++|
T Consensus       138 ~~~~VLDlG~GsG--~i--------ai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~f  207 (506)
T PRK01544        138 KFLNILELGTGSG--CI--------AISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKF  207 (506)
T ss_pred             CCCEEEEccCchh--HH--------HHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCc
Confidence            3468999999999  55        554443 33457999999                  3578899997653323689


Q ss_pred             eEEEecccccc-----------cCCh------------hhHHHHHHHHhccccCCeEEEeecc
Q psy9773         110 DIIVSEWMGFY-----------LLHE------------SMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       110 DlIv~~~~~~~-----------l~~~------------~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |+|+|++-...           ..++            ..+..++..+.++|+|||.+++...
T Consensus       208 DlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig  270 (506)
T PRK01544        208 DFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG  270 (506)
T ss_pred             cEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence            99999542100           0011            1345677888899999999998754

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=2.3e-07  Score=77.64  Aligned_cols=77  Identities=21%  Similarity=0.125  Sum_probs=59.3

Q ss_pred             CCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCC
Q psy9773          44 NPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPE  107 (252)
Q Consensus        44 ~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~  107 (252)
                      ......|++|+|+|||||  .|        ++.++..|+..|+|+|+                .++.|+.+|+..+.  +
T Consensus        40 ~~g~l~g~~V~DlG~GTG--~L--------a~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~--~  107 (198)
T COG2263          40 LRGDLEGKTVLDLGAGTG--IL--------AIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR--G  107 (198)
T ss_pred             HcCCcCCCEEEEcCCCcC--HH--------HHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC--C
Confidence            367788999999999999  88        88888899999999999                47999999999886  5


Q ss_pred             ceeEEEecccccccCChhhHHHHHH
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIF  132 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~  132 (252)
                      .+|.++.++-+.......|..-+..
T Consensus       108 ~~dtvimNPPFG~~~rhaDr~Fl~~  132 (198)
T COG2263         108 KFDTVIMNPPFGSQRRHADRPFLLK  132 (198)
T ss_pred             ccceEEECCCCccccccCCHHHHHH
Confidence            6888888765432222234443333

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.63  E-value=9.4e-08  Score=79.51  Aligned_cols=93  Identities=24%  Similarity=0.376  Sum_probs=62.7

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-------------------CceEEEEccccccC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-------------------LILEVIQNKIENVE  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-------------------~~i~~~~~d~~~~~  104 (252)
                      .....+.+||+||||+|  ..        ++.++.. ++.+|+..|.                   .++.+...|+.+..
T Consensus        41 ~~~~~~~~VLELGaG~G--l~--------gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~  110 (173)
T PF10294_consen   41 PELFRGKRVLELGAGTG--LP--------GIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDEL  110 (173)
T ss_dssp             GGGTTTSEEEETT-TTS--HH--------HHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-H
T ss_pred             hhhcCCceEEEECCccc--hh--------HHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcc
Confidence            45678899999999999  87        7888777 6678999998                   34566666664421


Q ss_pred             ----C-CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 ----L-PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ----~-~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                          . +.+||+|++..+.+   +......++.-+.++|+|+|.+++....
T Consensus       111 ~~~~~~~~~~D~IlasDv~Y---~~~~~~~L~~tl~~ll~~~~~vl~~~~~  158 (173)
T PF10294_consen  111 DSDLLEPHSFDVILASDVLY---DEELFEPLVRTLKRLLKPNGKVLLAYKR  158 (173)
T ss_dssp             HHHHHS-SSBSEEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred             cccccccccCCEEEEecccc---hHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence                1 15799999977644   4467888999999999999998777654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.62  E-value=2.1e-07  Score=87.87  Aligned_cols=97  Identities=14%  Similarity=0.033  Sum_probs=65.2

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------C-ceEEEEccccccCC-
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------L-ILEVIQNKIENVEL-  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~-~i~~~~~d~~~~~~-  105 (252)
                      ...+|.+|||+|||+|  ..        +..++. .+..+++|+|+                 . .+.+..+|...... 
T Consensus       235 ~~~~g~~VLDlcag~G--~k--------t~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~  304 (426)
T TIGR00563       235 APQNEETILDACAAPG--GK--------TTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW  304 (426)
T ss_pred             CCCCCCeEEEeCCCcc--HH--------HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence            4567899999999999  44        444444 33357999999                 1 23335666655443 


Q ss_pred             --CCceeEEEecccc---cccCChhh----------------HHHHHHHHhccccCCeEEEeeccccc
Q psy9773         106 --PEKVDIIVSEWMG---FYLLHESM----------------IDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       106 --~~~fDlIv~~~~~---~~l~~~~~----------------~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                        .++||.|+++...   ..+...++                ...+|..+.++|+|||+|+.++++..
T Consensus       305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence              2679999974211   11211121                35789999999999999999988744

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.60  E-value=4.3e-07  Score=76.22  Aligned_cols=110  Identities=16%  Similarity=0.097  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhC-CC-CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------Cce
Q psy9773          34 NEAYRAAICDN-PN-IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LIL   93 (252)
Q Consensus        34 ~~~~~~~l~~~-~~-~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i   93 (252)
                      ....++++.+. .+ ...|.++||+-+|||  .+        ++.++++|+.+++.+|.                  .+.
T Consensus        26 ~drVREalFNil~~~~i~g~~~LDlFAGSG--aL--------GlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~   95 (187)
T COG0742          26 TDRVREALFNILAPDEIEGARVLDLFAGSG--AL--------GLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEA   95 (187)
T ss_pred             chHHHHHHHHhccccccCCCEEEEecCCcc--Hh--------HHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccce
Confidence            34444555443 34 488999999999999  88        88999999999999999                  567


Q ss_pred             EEEEcccccc--CCC--CceeEEEecccccccCChhhHHHHHHH--HhccccCCeEEEeeccccccCC
Q psy9773          94 EVIQNKIENV--ELP--EKVDIIVSEWMGFYLLHESMIDSVIFA--RDKFLKPEGVMYPYKCILHSAP  155 (252)
Q Consensus        94 ~~~~~d~~~~--~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~--l~~~LkpgG~lv~~~~~~~~~~  155 (252)
                      .++..|...+  ...  ++||+|+.++-.+.  ...+....+..  -..+|+|+|.+++........+
T Consensus        96 ~~~~~da~~~L~~~~~~~~FDlVflDPPy~~--~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~~~~  161 (187)
T COG0742          96 RVLRNDALRALKQLGTREPFDLVFLDPPYAK--GLLDKELALLLLEENGWLKPGALIVVEHDKDVELP  161 (187)
T ss_pred             EEEeecHHHHHHhcCCCCcccEEEeCCCCcc--chhhHHHHHHHHHhcCCcCCCcEEEEEeCCCcCcc
Confidence            7888888744  222  35999999775331  11111223333  4688999999999987644333

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.59  E-value=3.4e-07  Score=86.87  Aligned_cols=98  Identities=15%  Similarity=0.050  Sum_probs=69.1

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEcc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNK   99 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d   99 (252)
                      +...+.......++.+|||+|||+|  .+        +..++..+ .+|+|+|+                 .++.++++|
T Consensus       285 l~~~vl~~l~~~~~~~VLDlgcGtG--~~--------sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d  353 (443)
T PRK13168        285 MVARALEWLDPQPGDRVLDLFCGLG--NF--------TLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHAN  353 (443)
T ss_pred             HHHHHHHHhcCCCCCEEEEEeccCC--HH--------HHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeC
Confidence            3333333334567789999999999  66        67777765 68999999                 468999999


Q ss_pred             ccccC----CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         100 IENVE----LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       100 ~~~~~----~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      +.+..    +. ++||+|++++--.     . +..++..+.+ ++|++++|+++....
T Consensus       354 ~~~~l~~~~~~~~~fD~Vi~dPPr~-----g-~~~~~~~l~~-~~~~~ivyvSCnp~t  404 (443)
T PRK13168        354 LEEDFTDQPWALGGFDKVLLDPPRA-----G-AAEVMQALAK-LGPKRIVYVSCNPAT  404 (443)
T ss_pred             hHHhhhhhhhhcCCCCEEEECcCCc-----C-hHHHHHHHHh-cCCCeEEEEEeChHH
Confidence            87542    22 5799999866321     2 2345555544 699999999986533

>PLN02366 spermidine synthase

Probab=98.57  E-value=2.4e-07  Score=83.91  Aligned_cols=96  Identities=14%  Similarity=-0.004  Sum_probs=67.0

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccC-
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVE-  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~-  104 (252)
                      ..+++||+||||+|  .+        +..+++.. ..+|+.+|+                     ++++++.+|...+- 
T Consensus        90 ~~pkrVLiIGgG~G--~~--------~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~  159 (308)
T PLN02366         90 PNPKKVLVVGGGDG--GV--------LREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK  159 (308)
T ss_pred             CCCCeEEEEcCCcc--HH--------HHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh
Confidence            45789999999999  55        45555543 357888887                     47889999986552 


Q ss_pred             -C-CCceeEEEecccccccCCh-hhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773         105 -L-PEKVDIIVSEWMGFYLLHE-SMIDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus       105 -~-~~~fDlIv~~~~~~~l~~~-~~~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                       . .++||+|++.......+.. ---..++..+.++|+|||+++....+.+.
T Consensus       160 ~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~  211 (308)
T PLN02366        160 NAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWL  211 (308)
T ss_pred             hccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCccc
Confidence             2 3689999995532221110 12356889999999999999887655343

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.56  E-value=1.6e-08  Score=84.99  Aligned_cols=90  Identities=18%  Similarity=0.145  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC-----
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE-----  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~-----  104 (252)
                      ..|.+||||.||||  .+        ++.++++|+++|+.||.                  .++.++..|....-     
T Consensus        41 ~~g~~vLDLFaGSG--al--------GlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~  110 (183)
T PF03602_consen   41 LEGARVLDLFAGSG--AL--------GLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK  110 (183)
T ss_dssp             HTT-EEEETT-TTS--HH--------HHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH
T ss_pred             cCCCeEEEcCCccC--cc--------HHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc
Confidence            68999999999999  88        88999999999999999                  35788888865442     


Q ss_pred             CCCceeEEEecccccccCChhh-HHHHHHHHh--ccccCCeEEEeecccc
Q psy9773         105 LPEKVDIIVSEWMGFYLLHESM-IDSVIFARD--KFLKPEGVMYPYKCIL  151 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~~-~~~~l~~l~--~~LkpgG~lv~~~~~~  151 (252)
                      ...+||+|++++- +..   .. ...++..+.  .+|+++|++++.+...
T Consensus       111 ~~~~fDiIflDPP-Y~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  111 KGEKFDIIFLDPP-YAK---GLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             CTS-EEEEEE--S-TTS---CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             cCCCceEEEECCC-ccc---chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            2378999999774 222   22 356666665  8999999999998653

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.55  E-value=3.2e-07  Score=83.21  Aligned_cols=88  Identities=9%  Similarity=0.030  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC--CCc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL--PEK  108 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~--~~~  108 (252)
                      .++.+|||+|||+|  .+        +..+++.+ .+|+|+|+                 .+++|+++|+..+..  .+.
T Consensus       172 ~~~~~VLDl~cG~G--~~--------sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~  240 (315)
T PRK03522        172 LPPRSMWDLFCGVG--GF--------GLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEV  240 (315)
T ss_pred             cCCCEEEEccCCCC--HH--------HHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCC
Confidence            35689999999999  77        77788776 68999999                 468999999987643  257


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      ||+|++++--..     ....++..+ ..++|++++|+++....
T Consensus       241 ~D~Vv~dPPr~G-----~~~~~~~~l-~~~~~~~ivyvsc~p~t  278 (315)
T PRK03522        241 PDLVLVNPPRRG-----IGKELCDYL-SQMAPRFILYSSCNAQT  278 (315)
T ss_pred             CeEEEECCCCCC-----ccHHHHHHH-HHcCCCeEEEEECCccc
Confidence            999999764221     122333333 34688999999887543

>TIGR00417 speE spermidine synthase

Probab=98.54  E-value=4.5e-07  Score=80.53  Aligned_cols=91  Identities=13%  Similarity=0.019  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccC--
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVE--  104 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~--  104 (252)
                      .+++||+||||+|  .+        +..+.+.+ ..+++++|+                     .+++++.+|...+-  
T Consensus        72 ~p~~VL~iG~G~G--~~--------~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~  141 (270)
T TIGR00417        72 NPKHVLVIGGGDG--GV--------LREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD  141 (270)
T ss_pred             CCCEEEEEcCCch--HH--------HHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh
Confidence            4569999999999  44        44444443 467888888                     24667777765542  


Q ss_pred             CCCceeEEEecccccccCChhh--HHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LPEKVDIIVSEWMGFYLLHESM--IDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~~--~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+++||+|++........ ...  ...++..+.++|+|||++++...+
T Consensus       142 ~~~~yDvIi~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       142 TENTFDVIIVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQSES  188 (270)
T ss_pred             CCCCccEEEEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            136899999965422111 111  457888999999999999987543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.54  E-value=4.1e-07  Score=79.03  Aligned_cols=94  Identities=19%  Similarity=0.168  Sum_probs=62.0

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------Cce-EEEEcccc
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LIL-EVIQNKIE  101 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i-~~~~~d~~  101 (252)
                      ..+..++........+.+|||+|||||  .+        +..+++.|+++|+|+|+            .++ .+...|+.
T Consensus        61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG--~~--------t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~  130 (228)
T TIGR00478        61 EKLKEALEEFNIDVKNKIVLDVGSSTG--GF--------TDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR  130 (228)
T ss_pred             HHHHHHHHhcCCCCCCCEEEEcccCCC--HH--------HHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc
Confidence            334455554444568899999999999  77        78888888889999999            232 23444555


Q ss_pred             ccCCC------CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         102 NVELP------EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       102 ~~~~~------~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .....      ..+|+++++           +..+|..+.++|+| |.+++-...
T Consensus       131 ~~~~~~~~~d~~~~DvsfiS-----------~~~~l~~i~~~l~~-~~~~~L~KP  173 (228)
T TIGR00478       131 YVTPADIFPDFATFDVSFIS-----------LISILPELDLLLNP-NDLTLLFKP  173 (228)
T ss_pred             cCCHhHcCCCceeeeEEEee-----------hHhHHHHHHHHhCc-CeEEEEcCh
Confidence            33211      345655442           22357788888999 777765544

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.54  E-value=4.3e-07  Score=76.65  Aligned_cols=90  Identities=16%  Similarity=0.077  Sum_probs=65.8

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC--C-
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE--L-  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~--~-  105 (252)
                      ...+.+|||++||+|  .+        ++.++++|+.+|+++|.                  .++.++++|+....  . 
T Consensus        47 ~~~g~~vLDLfaGsG--~l--------glea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~  116 (189)
T TIGR00095        47 EIQGAHLLDVFAGSG--LL--------GEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA  116 (189)
T ss_pred             hcCCCEEEEecCCCc--HH--------HHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh
Confidence            356899999999999  88        88999999888999999                  35789999995541  1 


Q ss_pred             -C-CceeEEEecccccccCChhhHHHHHHHH--hccccCCeEEEeeccc
Q psy9773         106 -P-EKVDIIVSEWMGFYLLHESMIDSVIFAR--DKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 -~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l--~~~LkpgG~lv~~~~~  150 (252)
                       . ..||+|+..+-.. .   .....++..+  ..+|+++|++++.+..
T Consensus       117 ~~~~~~dvv~~DPPy~-~---~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       117 KKPTFDNVIYLDPPFF-N---GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             ccCCCceEEEECcCCC-C---CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence             1 2489998866422 1   1233333333  4689999999998765

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.53  E-value=3.9e-07  Score=81.72  Aligned_cols=59  Identities=14%  Similarity=0.227  Sum_probs=47.1

Q ss_pred             CceEEEEccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          91 LILEVIQNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        91 ~~i~~~~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..|.|.+.|+.+.+++  +.||+|+|..++.++ .......++..+.+.|+|||+|++....
T Consensus       204 ~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~sE  264 (287)
T PRK10611        204 NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGHSE  264 (287)
T ss_pred             ccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence            4457778888775443  789999998887766 4457889999999999999999988753

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=6e-07  Score=80.30  Aligned_cols=86  Identities=27%  Similarity=0.329  Sum_probs=59.7

Q ss_pred             EEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC--------------C---ceEEEEccccccCCCCceeEEE
Q psy9773          52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY--------------L---ILEVIQNKIENVELPEKVDIIV  113 (252)
Q Consensus        52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~--------------~---~i~~~~~d~~~~~~~~~fDlIv  113 (252)
                      +|||+|||||  .+        ++.++...+ .+|+|+|+              .   ++.++++|+..-- .++||+||
T Consensus       113 ~ilDlGTGSG--~i--------ai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-~~~fDlIV  181 (280)
T COG2890         113 RILDLGTGSG--AI--------AIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-RGKFDLIV  181 (280)
T ss_pred             cEEEecCChH--HH--------HHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc-CCceeEEE
Confidence            8999999999  66        666666544 48999999              2   2344444433322 25899999


Q ss_pred             ecccccccCCh------------------------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         114 SEWMGFYLLHE------------------------SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       114 ~~~~~~~l~~~------------------------~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |++-  +++..                        .....++..+.+.|+|||.+++....
T Consensus       182 sNPP--Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~  240 (280)
T COG2890         182 SNPP--YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL  240 (280)
T ss_pred             eCCC--CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence            9652  22221                        13567788889999999999998763

>PRK01581 speE spermidine synthase; Validated

Probab=98.50  E-value=3.7e-07  Score=84.06  Aligned_cols=94  Identities=16%  Similarity=0.116  Sum_probs=64.3

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------------CceEEEEcccc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------------LILEVIQNKIE  101 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------------~~i~~~~~d~~  101 (252)
                      ...+++||++|||+|  ..        ...+.+.+ ..+|+++|+                        ++++++.+|..
T Consensus       148 h~~PkrVLIIGgGdG--~t--------lrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~  217 (374)
T PRK01581        148 VIDPKRVLILGGGDG--LA--------LREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK  217 (374)
T ss_pred             CCCCCEEEEECCCHH--HH--------HHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH
Confidence            345579999999999  44        34444443 357888888                        46778888888


Q ss_pred             ccCC--CCceeEEEeccccccc--CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         102 NVEL--PEKVDIIVSEWMGFYL--LHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       102 ~~~~--~~~fDlIv~~~~~~~l--~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+-.  .+.||+|+++......  ...-.-..++..+++.|+|||+|++...+
T Consensus       218 ~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s  270 (374)
T PRK01581        218 EFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNS  270 (374)
T ss_pred             HHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            7532  2689999996421111  01112356889999999999999987654

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.49  E-value=2.4e-07  Score=82.95  Aligned_cols=95  Identities=20%  Similarity=0.176  Sum_probs=69.3

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccCC---
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVEL---  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~~---  105 (252)
                      ..+++|||+-|=||  .+        +..++..|+.+|++||.                   .++++++.|+..+..   
T Consensus       122 ~~gkrvLnlFsYTG--gf--------sv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~  191 (286)
T PF10672_consen  122 AKGKRVLNLFSYTG--GF--------SVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK  191 (286)
T ss_dssp             CTTCEEEEET-TTT--HH--------HHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH
T ss_pred             cCCCceEEecCCCC--HH--------HHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh
Confidence            45889999999999  77        77888889889999999                   578899999977522   


Q ss_pred             -CCceeEEEecccccccC---ChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         106 -PEKVDIIVSEWMGFYLL---HESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       106 -~~~fDlIv~~~~~~~l~---~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                       .++||+||+.+-.+.-.   -..+...++..+.++|+|||.|++.+++..
T Consensus       192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~  242 (286)
T PF10672_consen  192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH  242 (286)
T ss_dssp             HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred             cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence             27899999966543211   123677889999999999999998877533

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK03612 spermidine synthase; Provisional

Probab=98.49  E-value=3.8e-07  Score=88.27  Aligned_cols=93  Identities=17%  Similarity=0.105  Sum_probs=66.4

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------------------CceEEEEccccc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------------------LILEVIQNKIEN  102 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------------------~~i~~~~~d~~~  102 (252)
                      .++++|||+|||+|  ..        +..+.+.+. .+++++|+                        ++++++.+|...
T Consensus       296 ~~~~rVL~IG~G~G--~~--------~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~  365 (521)
T PRK03612        296 ARPRRVLVLGGGDG--LA--------LREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN  365 (521)
T ss_pred             CCCCeEEEEcCCcc--HH--------HHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH
Confidence            45689999999999  55        555556554 68999998                        257788888877


Q ss_pred             cC--CCCceeEEEecccccccCC--hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         103 VE--LPEKVDIIVSEWMGFYLLH--ESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       103 ~~--~~~~fDlIv~~~~~~~l~~--~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.  .+++||+|+++......+.  .-.-..+++.+.+.|+|||++++...+
T Consensus       366 ~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~  417 (521)
T PRK03612        366 WLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS  417 (521)
T ss_pred             HHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence            52  2378999999653221110  011245788999999999999987654

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.48  E-value=4e-07  Score=79.93  Aligned_cols=94  Identities=21%  Similarity=0.268  Sum_probs=67.1

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC------------------CceEEEEccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY------------------LILEVIQNKI  100 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~------------------~~i~~~~~d~  100 (252)
                      |.....+.+|.+||+.|.|+|  .+        +..+++ .++ .+|+..|+                  .++++.+.|+
T Consensus        32 I~~~l~i~pG~~VlEaGtGSG--~l--------t~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv  101 (247)
T PF08704_consen   32 ILMRLDIRPGSRVLEAGTGSG--SL--------THALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV  101 (247)
T ss_dssp             HHHHTT--TT-EEEEE--TTS--HH--------HHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred             HHHHcCCCCCCEEEEecCCcH--HH--------HHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence            333468899999999999999  65        556554 332 58999999                  6899999999


Q ss_pred             cccCCC----CceeEEEecccccccCChhhHHHHHHHHhccc-cCCeEEEeeccccc
Q psy9773         101 ENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFL-KPEGVMYPYKCILH  152 (252)
Q Consensus       101 ~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~L-kpgG~lv~~~~~~~  152 (252)
                      ....++    ..+|.|+...        +++..++..+.+.| +|||++++..+++.
T Consensus       102 ~~~g~~~~~~~~~DavfLDl--------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ie  150 (247)
T PF08704_consen  102 CEEGFDEELESDFDAVFLDL--------PDPWEAIPHAKRALKKPGGRICCFSPCIE  150 (247)
T ss_dssp             GCG--STT-TTSEEEEEEES--------SSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred             ecccccccccCcccEEEEeC--------CCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence            754442    6799998744        56777889999999 89999999888643

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.47  E-value=6.6e-07  Score=83.17  Aligned_cols=86  Identities=8%  Similarity=0.009  Sum_probs=64.3

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC--Cc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP--EK  108 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~--~~  108 (252)
                      .++.+|||+|||+|  .+        ++.++..+ .+|+|+|+                 .++.++++|+.++...  ++
T Consensus       232 ~~~~~vLDL~cG~G--~~--------~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~  300 (374)
T TIGR02085       232 IPVTQMWDLFCGVG--GF--------GLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSA  300 (374)
T ss_pred             cCCCEEEEccCCcc--HH--------HHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCC
Confidence            35679999999999  77        77777765 67999999                 4688999999775422  56


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ||+|++++--.     .....++..+. .++|++++|+++..
T Consensus       301 ~D~vi~DPPr~-----G~~~~~l~~l~-~~~p~~ivyvsc~p  336 (374)
T TIGR02085       301 PELVLVNPPRR-----GIGKELCDYLS-QMAPKFILYSSCNA  336 (374)
T ss_pred             CCEEEECCCCC-----CCcHHHHHHHH-hcCCCeEEEEEeCH
Confidence            99999977422     22344555553 47999999999864

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.45  E-value=7.9e-07  Score=80.98  Aligned_cols=103  Identities=17%  Similarity=0.123  Sum_probs=77.4

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEE
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQ   97 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~   97 (252)
                      ..+++++.+.+...+|..|||--||||  .+        .+.+...|+ +++|+|+                 ....+..
T Consensus       183 P~lAR~mVNLa~v~~G~~vlDPFcGTG--gi--------LiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~  251 (347)
T COG1041         183 PRLARAMVNLARVKRGELVLDPFCGTG--GI--------LIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLK  251 (347)
T ss_pred             HHHHHHHHHHhccccCCEeecCcCCcc--HH--------HHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEE
Confidence            446677877889999999999999999  44        445555674 6999999                 2333444


Q ss_pred             c-cccccCCC-CceeEEEecccccccCC-------hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          98 N-KIENVELP-EKVDIIVSEWMGFYLLH-------ESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        98 ~-d~~~~~~~-~~fDlIv~~~~~~~l~~-------~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      . |+..++++ +++|.|++.+-- ....       ..-...+|..+.++|++||++++..+
T Consensus       252 ~~Da~~lpl~~~~vdaIatDPPY-Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         252 VLDATNLPLRDNSVDAIATDPPY-GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             ecccccCCCCCCccceEEecCCC-CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            4 99999988 569999995532 1111       12367889999999999999999887

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.42  E-value=1.9e-06  Score=76.50  Aligned_cols=95  Identities=13%  Similarity=0.171  Sum_probs=72.5

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcC------CCcEEEeeC--------------------------------
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH------PLDHYAPQY--------------------------------   90 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g------~~~v~gvD~--------------------------------   90 (252)
                      ..-+|+-.||+||--.-      .+++.+...+      ..+++|+|+                                
T Consensus        96 ~~irIWSaaCStGEEpY------SiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~  169 (268)
T COG1352          96 RPIRIWSAACSTGEEPY------SLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFE  169 (268)
T ss_pred             CceEEEecCcCCCccHH------HHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEe
Confidence            45799999999996333      0133333322      247889999                                


Q ss_pred             --------------CceEEEEccccccC-CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          91 --------------LILEVIQNKIENVE-LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        91 --------------~~i~~~~~d~~~~~-~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                                    ..|.|-+.|+.... .++.||+|+|..|+-++ +.+.-..++..++..|+|||+|++...-
T Consensus       170 ~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~il~~f~~~L~~gG~LflG~sE  243 (268)
T COG1352         170 RGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQERILRRFADSLKPGGLLFLGHSE  243 (268)
T ss_pred             ecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence                          56788888887776 66889999999988776 4446789999999999999999998754

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.41  E-value=1.2e-06  Score=82.73  Aligned_cols=88  Identities=17%  Similarity=0.094  Sum_probs=63.5

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccC---
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVE---  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~---  104 (252)
                      ....++.+|||+|||+|  .+        ++.+++.+ .+|+|+|+                 .++.++++|+..+.   
T Consensus       288 l~~~~~~~vLDl~cG~G--~~--------sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~  356 (431)
T TIGR00479       288 LELQGEELVVDAYCGVG--TF--------TLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ  356 (431)
T ss_pred             hccCCCCEEEEcCCCcC--HH--------HHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence            34566789999999999  77        77777664 68999999                 47899999987641   


Q ss_pred             -C-CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         105 -L-PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       105 -~-~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                       . ..+||+|++++.-..     ....++..+. .|+|++++|+++.
T Consensus       357 ~~~~~~~D~vi~dPPr~G-----~~~~~l~~l~-~l~~~~ivyvsc~  397 (431)
T TIGR00479       357 PWAGQIPDVLLLDPPRKG-----CAAEVLRTII-ELKPERIVYVSCN  397 (431)
T ss_pred             HhcCCCCCEEEECcCCCC-----CCHHHHHHHH-hcCCCEEEEEcCC
Confidence             2 257999998664221     1244555554 4789999988764

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.40  E-value=1.2e-06  Score=76.87  Aligned_cols=84  Identities=21%  Similarity=0.229  Sum_probs=62.3

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCC-CCceeEEEeccc
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVEL-PEKVDIIVSEWM  117 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~-~~~fDlIv~~~~  117 (252)
                      ...++||||+|.|  ..        +..++.. .++|++++.          ..++++  +..++.. +.+||+|.|.++
T Consensus        94 ~~~~lLDlGAGdG--~V--------T~~l~~~-f~~v~aTE~S~~Mr~rL~~kg~~vl--~~~~w~~~~~~fDvIscLNv  160 (265)
T PF05219_consen   94 KDKSLLDLGAGDG--EV--------TERLAPL-FKEVYATEASPPMRWRLSKKGFTVL--DIDDWQQTDFKFDVISCLNV  160 (265)
T ss_pred             cCCceEEecCCCc--HH--------HHHHHhh-cceEEeecCCHHHHHHHHhCCCeEE--ehhhhhccCCceEEEeehhh
Confidence            4578999999999  44        4555554 467999999          445544  3333432 268999999665


Q ss_pred             ccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         118 GFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       118 ~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                         +..-..+..+|+.+++.|+|+|++++..
T Consensus       161 ---LDRc~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  161 ---LDRCDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             ---hhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence               4444688999999999999999999765

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.38  E-value=7.6e-07  Score=76.83  Aligned_cols=94  Identities=20%  Similarity=0.236  Sum_probs=74.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccC--
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVE--  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~--  104 (252)
                      ..+.|.+|||.+.|-|  ..        ++.+.++|+..|+.++.                   .+|.++.+|+.++-  
T Consensus       131 ~~~~G~rVLDtC~GLG--Yt--------Ai~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~  200 (287)
T COG2521         131 KVKRGERVLDTCTGLG--YT--------AIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD  200 (287)
T ss_pred             ccccCCEeeeeccCcc--HH--------HHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc
Confidence            4557999999999999  65        77888899878988877                   46788899988773  


Q ss_pred             CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         105 LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       105 ~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++ .+||+|+..+--+.+...-.-..+-.+++|+|+|||+|+-...
T Consensus       201 ~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG  246 (287)
T COG2521         201 FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVG  246 (287)
T ss_pred             CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence            33 7899999866544444444567888999999999999986554

>PRK04148 hypothetical protein; Provisional

Probab=98.36  E-value=3.3e-06  Score=67.34  Aligned_cols=94  Identities=16%  Similarity=0.178  Sum_probs=67.3

Q ss_pred             HHHHHhCCCCCCCCEEEEEcCCcCchh-hhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCCC
Q psy9773          38 RAAICDNPNIFAGKTVLDVGTGTGKSI-LLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVELP  106 (252)
Q Consensus        38 ~~~l~~~~~~~~~~~VLDlGcGtG~~~-ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~~  106 (252)
                      .+.|..+.....+.+|||+|||+|  . +        +..+++.| ..|+|+|+          ..+.++.+|+.+..+.
T Consensus         5 ~~~l~~~~~~~~~~kileIG~GfG--~~v--------A~~L~~~G-~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~   73 (134)
T PRK04148          5 AEFIAENYEKGKNKKIVELGIGFY--FKV--------AKKLKESG-FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLE   73 (134)
T ss_pred             HHHHHHhcccccCCEEEEEEecCC--HHH--------HHHHHHCC-CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHH
Confidence            334444444456789999999999  4 5        66777777 57999999          3468999999988776


Q ss_pred             --CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         107 --EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       107 --~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                        ..+|+|.+      +...+++...+.++.+.+.-+-++.+-.
T Consensus        74 ~y~~a~liys------irpp~el~~~~~~la~~~~~~~~i~~l~  111 (134)
T PRK04148         74 IYKNAKLIYS------IRPPRDLQPFILELAKKINVPLIIKPLS  111 (134)
T ss_pred             HHhcCCEEEE------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence              88999987      3444567777777776665555555443

>PLN02476 O-methyltransferase

Probab=98.36  E-value=1.3e-06  Score=77.90  Aligned_cols=89  Identities=15%  Similarity=0.103  Sum_probs=66.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC------------------CceEEEEccccccC-
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY------------------LILEVIQNKIENVE-  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~------------------~~i~~~~~d~~~~~-  104 (252)
                      ....+++|||+|||+|.+++          .++. .+ ..+++++|.                  ++++++.+|+.+.. 
T Consensus       115 ~~~~ak~VLEIGT~tGySal----------~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~  184 (278)
T PLN02476        115 QILGAERCIEVGVYTGYSSL----------AVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLK  184 (278)
T ss_pred             HhcCCCeEEEecCCCCHHHH----------HHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence            45567899999999995544          4443 11 246999999                  58999999986642 


Q ss_pred             -C-----CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 -L-----PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 -~-----~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       +     .++||+|+...      +......++..+.++|+|||++++...-
T Consensus       185 ~l~~~~~~~~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL  230 (278)
T PLN02476        185 SMIQNGEGSSYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVL  230 (278)
T ss_pred             HHHhcccCCCCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence             1     25799998843      2346778888889999999999987653

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.34  E-value=2e-06  Score=73.26  Aligned_cols=51  Identities=20%  Similarity=0.251  Sum_probs=41.4

Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCCCC
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYS  158 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~  158 (252)
                      ++||.|+|..++|..++. ....+|..+.++|+|||.|++..+..+.-....
T Consensus       101 ~~~D~i~~~N~lHI~p~~-~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts  151 (204)
T PF06080_consen  101 ESFDAIFCINMLHISPWS-AVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTS  151 (204)
T ss_pred             CCcceeeehhHHHhcCHH-HHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCC
Confidence            589999999988877666 578999999999999999999988655443433

The function of this family is unknown.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.33  E-value=1.9e-06  Score=73.08  Aligned_cols=88  Identities=17%  Similarity=0.252  Sum_probs=60.5

Q ss_pred             EEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEcccccc----CCCCce
Q psy9773          52 TVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENV----ELPEKV  109 (252)
Q Consensus        52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~----~~~~~f  109 (252)
                      .+||||||.|..++          .+|. .+...++|+|+                 .|+.++++|+..+    ..++++
T Consensus        20 l~lEIG~G~G~~l~----------~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v   89 (195)
T PF02390_consen   20 LILEIGCGKGEFLI----------ELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSV   89 (195)
T ss_dssp             EEEEET-TTSHHHH----------HHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSE
T ss_pred             eEEEecCCCCHHHH----------HHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCch
Confidence            89999999994443          4444 44478999999                 8999999999874    234889


Q ss_pred             eEEEecccccccC--Chh---hHHHHHHHHhccccCCeEEEeecc
Q psy9773         110 DIIVSEWMGFYLL--HES---MIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       110 DlIv~~~~~~~l~--~~~---~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |-|+...---+.-  |..   --..++..+.++|+|||.|.+.+-
T Consensus        90 ~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD  134 (195)
T PF02390_consen   90 DRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD  134 (195)
T ss_dssp             EEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             heEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence            9998733221110  100   245788899999999999988764

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.33  E-value=1.1e-06  Score=73.16  Aligned_cols=105  Identities=23%  Similarity=0.141  Sum_probs=62.7

Q ss_pred             HHHHHHHhCCCCCC--CCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC------CceEEEEccccccCC
Q psy9773          36 AYRAAICDNPNIFA--GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY------LILEVIQNKIENVEL  105 (252)
Q Consensus        36 ~~~~~l~~~~~~~~--~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~------~~i~~~~~d~~~~~~  105 (252)
                      .+.+++.......+  +.+||||||++|  -+        +..+..++  ..+|+|+|+      ..+.++++|+.+...
T Consensus         8 KL~ei~~~~~~~~~~~~~~vlDlG~aPG--Gw--------s~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~   77 (181)
T PF01728_consen    8 KLYEIDEKFKIFKPGKGFTVLDLGAAPG--GW--------SQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPEN   77 (181)
T ss_dssp             HHHHHHHTTSSS-TTTTEEEEEET-TTS--HH--------HHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEH
T ss_pred             HHHHHHHHCCCCCcccccEEEEcCCccc--ce--------eeeeeecccccceEEEEeccccccccceeeeecccchhhH
Confidence            34444544332444  489999999999  66        66777765  468999999      456777778754311


Q ss_pred             --------C---CceeEEEecccccccCC-----h---hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 --------P---EKVDIIVSEWMGFYLLH-----E---SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 --------~---~~fDlIv~~~~~~~l~~-----~---~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                              +   ..+|+|+|.........     .   .-....+.-+...|+|||.+++-...
T Consensus        78 ~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~  141 (181)
T PF01728_consen   78 IKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK  141 (181)
T ss_dssp             SHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred             HHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence                    1   48999999663222111     1   12233344445779999988876543

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.31  E-value=1.7e-06  Score=74.07  Aligned_cols=88  Identities=20%  Similarity=0.197  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC------------------CceEEEEccccccCC-
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY------------------LILEVIQNKIENVEL-  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~-  105 (252)
                      ....++||+|||++|.+++          .+++ .+ ..+++.+|.                  .+|+++.+|+.+.-. 
T Consensus        43 ~~~~k~vLEIGt~~GySal----------~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~  112 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSAL----------WLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPE  112 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHH----------HHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHH
T ss_pred             hcCCceEEEeccccccHHH----------HHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHH
Confidence            4667899999999996655          3333 22 257999999                  689999999976521 


Q ss_pred             ------CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 ------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ------~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                            .++||+|+...      .......++..+.++|+|||++++...-
T Consensus       113 l~~~~~~~~fD~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l  157 (205)
T PF01596_consen  113 LANDGEEGQFDFVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVL  157 (205)
T ss_dssp             HHHTTTTTSEEEEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred             HHhccCCCceeEEEEcc------cccchhhHHHHHhhhccCCeEEEEcccc
Confidence                  25799998843      2245777888888999999999998754

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.31  E-value=7.8e-07  Score=72.95  Aligned_cols=57  Identities=11%  Similarity=-0.007  Sum_probs=49.4

Q ss_pred             CceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          91 LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        91 ~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+++++++|+.+++++ ++||+|++..+++++   .++..+|++++|+|||||.|++....
T Consensus        26 ~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i~d~~   83 (160)
T PLN02232         26 KCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRVSILDFN   83 (160)
T ss_pred             CceEEEEechhhCCCCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEEEEEECC
Confidence            4789999999999887 789999997765555   68899999999999999999987654

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.30  E-value=1.8e-06  Score=76.14  Aligned_cols=95  Identities=18%  Similarity=0.219  Sum_probs=63.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------------------------
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------------------------   90 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------------------------   90 (252)
                      .....|.++||||||.-  +.        ..+.+...+.+++..|.                                  
T Consensus        52 ~g~~~g~~llDiGsGPt--iy--------~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~  121 (256)
T PF01234_consen   52 SGGVKGETLLDIGSGPT--IY--------QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR  121 (256)
T ss_dssp             TSSS-EEEEEEES-TT----G--------GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred             ccCcCCCEEEEeCCCcH--HH--------hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence            34556889999999996  44        33333333456777777                                  


Q ss_pred             -----------Cce-EEEEccccccCC-------CCceeEEEeccccccc-CChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          91 -----------LIL-EVIQNKIENVEL-------PEKVDIIVSEWMGFYL-LHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        91 -----------~~i-~~~~~d~~~~~~-------~~~fDlIv~~~~~~~l-~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                                 ..| .++.+|+.+.+.       |.+||+|++..++... ........+++++.++|||||.|++...
T Consensus       122 ~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~  200 (256)
T PF01234_consen  122 EKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV  200 (256)
T ss_dssp             SGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             chhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence                       223 377889877632       2359999997776444 3566889999999999999999998653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=5.1e-06  Score=71.92  Aligned_cols=102  Identities=20%  Similarity=0.161  Sum_probs=76.4

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceE-EEEcccc
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILE-VIQNKIE  101 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~-~~~~d~~  101 (252)
                      ..+..++.......+|+++||+|+.||++          +..+..+|++.|+|+|.            .++. +...|++
T Consensus        65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGF----------Td~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r  134 (245)
T COG1189          65 LKLEKALEEFELDVKGKVVLDIGSSTGGF----------TDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVR  134 (245)
T ss_pred             HHHHHHHHhcCcCCCCCEEEEecCCCccH----------HHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChh
Confidence            34566666666778899999999999954          55777889999999999            3333 4456666


Q ss_pred             ccCCC---CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         102 NVELP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       102 ~~~~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      .+...   +..|+|+|..  .++    .+..+|..+..+|+|+|.++.-...++
T Consensus       135 ~l~~~~~~~~~d~~v~Dv--SFI----SL~~iLp~l~~l~~~~~~~v~LvKPQF  182 (245)
T COG1189         135 YLTPEDFTEKPDLIVIDV--SFI----SLKLILPALLLLLKDGGDLVLLVKPQF  182 (245)
T ss_pred             hCCHHHcccCCCeEEEEe--ehh----hHHHHHHHHHHhcCCCceEEEEecchh
Confidence            66443   6789999844  333    678899999999999999987665443

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.30  E-value=3.8e-06  Score=71.87  Aligned_cols=88  Identities=19%  Similarity=0.246  Sum_probs=72.3

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--CceEEEEccccccCCC----CceeEEEecccccccCCh
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--LILEVIQNKIENVELP----EKVDIIVSEWMGFYLLHE  124 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--~~i~~~~~d~~~~~~~----~~fDlIv~~~~~~~l~~~  124 (252)
                      .++|||||=+..+..            ...+...|+.||+  ..-.+.++|+-..|.|    +.||+|.++.++++++..
T Consensus        53 lrlLEVGals~~N~~------------s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p  120 (219)
T PF11968_consen   53 LRLLEVGALSTDNAC------------STSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP  120 (219)
T ss_pred             ceEEeecccCCCCcc------------cccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence            699999987652222            2344456999999  4556889999998776    689999999999999999


Q ss_pred             hhHHHHHHHHhccccCCeE-----EEeeccc
Q psy9773         125 SMIDSVIFARDKFLKPEGV-----MYPYKCI  150 (252)
Q Consensus       125 ~~~~~~l~~l~~~LkpgG~-----lv~~~~~  150 (252)
                      .....++.+++++|+|+|.     |++..|.
T Consensus       121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~  151 (219)
T PF11968_consen  121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL  151 (219)
T ss_pred             HHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence            8999999999999999999     8777664

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=3.9e-06  Score=71.47  Aligned_cols=99  Identities=16%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCC--cEEEeeC------CceEEEEccccccCCC------
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPL--DHYAPQY------LILEVIQNKIENVELP------  106 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~--~v~gvD~------~~i~~~~~d~~~~~~~------  106 (252)
                      ......+.++.+|+||||..|  .+        +..+++....  .|+|+|+      .++.++++|++.-+..      
T Consensus        37 ~~k~~i~~~~~~ViDLGAAPG--gW--------sQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~  106 (205)
T COG0293          37 NEKFKLFKPGMVVVDLGAAPG--GW--------SQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEA  106 (205)
T ss_pred             HHhcCeecCCCEEEEcCCCCC--cH--------HHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHH
Confidence            333445677899999999999  77        7777774322  4999999      6789999999877532      


Q ss_pred             ---CceeEEEeccccccc----CCh-h---hHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 ---EKVDIIVSEWMGFYL----LHE-S---MIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ---~~fDlIv~~~~~~~l----~~~-~---~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                         .++|+|+|.++....    .++ .   -...++.-+..+|+|||.+++-..
T Consensus       107 l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f  160 (205)
T COG0293         107 LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF  160 (205)
T ss_pred             cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence               347999986654111    111 1   233444555789999999998653

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.26  E-value=8.8e-06  Score=68.47  Aligned_cols=89  Identities=25%  Similarity=0.307  Sum_probs=64.9

Q ss_pred             CCCCCCC-EEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCC
Q psy9773          45 PNIFAGK-TVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVEL  105 (252)
Q Consensus        45 ~~~~~~~-~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~  105 (252)
                      ....... +++|+|+|.|  .-        ++.++- .+..+++.+|.                 .++.++++.+.+...
T Consensus        43 ~~~~~~~~~~lDiGSGaG--fP--------GipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~  112 (184)
T PF02527_consen   43 PFLPDFGKKVLDIGSGAG--FP--------GIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEY  112 (184)
T ss_dssp             GCS-CCCSEEEEETSTTT--TT--------HHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTT
T ss_pred             hhhccCCceEEecCCCCC--Ch--------hHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccccc
Confidence            3333333 8999999999  44        444444 23357999999                 789999999999444


Q ss_pred             CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..+||+|++.-+       ..+..++.-+.++|++||++++.-..
T Consensus       113 ~~~fd~v~aRAv-------~~l~~l~~~~~~~l~~~G~~l~~KG~  150 (184)
T PF02527_consen  113 RESFDVVTARAV-------APLDKLLELARPLLKPGGRLLAYKGP  150 (184)
T ss_dssp             TT-EEEEEEESS-------SSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred             CCCccEEEeehh-------cCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            489999999664       45667888889999999999987654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG2904|consensus

Probab=98.26  E-value=8.2e-06  Score=72.00  Aligned_cols=91  Identities=23%  Similarity=0.245  Sum_probs=62.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC---C-
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE---L-  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~---~-  105 (252)
                      ..+..|||+|||+|++.+        ++ +...+...++|+|.                  +++.+++.++....   . 
T Consensus       147 ~~~~~ildlgtGSGaIsl--------sl-l~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~  217 (328)
T KOG2904|consen  147 SKHTHILDLGTGSGAISL--------SL-LHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP  217 (328)
T ss_pred             cccceEEEecCCccHHHH--------HH-HhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc
Confidence            455689999999996555        33 23344568999999                  67777766664432   1 


Q ss_pred             -C-CceeEEEecccccccCCh-------------------------hhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 -P-EKVDIIVSEWMGFYLLHE-------------------------SMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 -~-~~fDlIv~~~~~~~l~~~-------------------------~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                       . +++|+++|++-  ++.+.                         ..+..++.-+.|.|+|||.+.+...
T Consensus       218 l~~~~~dllvsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  218 LLEGKIDLLVSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             cccCceeEEecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence             2 88999999652  11111                         1355666677899999999999875

>PLN02672 methionine S-methyltransferase

Probab=98.25  E-value=3.7e-06  Score=86.91  Aligned_cols=109  Identities=19%  Similarity=0.208  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhCCC-CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC--------------C---
Q psy9773          31 TVRNEAYRAAICDNPN-IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY--------------L---   91 (252)
Q Consensus        31 ~~~~~~~~~~l~~~~~-~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~--------------~---   91 (252)
                      +..+..+.+.+..... ..++.+|||+|||+|  .+        ++.++... ..+|+|+|+              .   
T Consensus        99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG--~I--------ai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~  168 (1082)
T PLN02672         99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNG--WI--------SIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALD  168 (1082)
T ss_pred             chhHHHHHHHHHhcccccCCCCEEEEEecchH--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence            3445555555432211 124579999999999  65        66665543 358999999              1   


Q ss_pred             ----------------ceEEEEccccccCCC--CceeEEEecccccccC------------Ch-----------------
Q psy9773          92 ----------------ILEVIQNKIENVELP--EKVDIIVSEWMGFYLL------------HE-----------------  124 (252)
Q Consensus        92 ----------------~i~~~~~d~~~~~~~--~~fDlIv~~~~~~~l~------------~~-----------------  124 (252)
                                      ++.|+++|+.+....  .+||+||+++- +...            ++                 
T Consensus       169 ~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~  247 (1082)
T PLN02672        169 DDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGF  247 (1082)
T ss_pred             cccccccccccccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCC
Confidence                            478999998765432  36999999542 1000            00                 


Q ss_pred             ---h----hHHHHHHHHhccccCCeEEEeeccc
Q psy9773         125 ---S----MIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       125 ---~----~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                         .    -+..++..+.++|+|||++++....
T Consensus       248 ~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~  280 (1082)
T PLN02672        248 VEDQFGLGLIARAVEEGISVIKPMGIMIFNMGG  280 (1082)
T ss_pred             CCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence               1    2367777888999999999998764

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.21  E-value=3.4e-06  Score=72.74  Aligned_cols=98  Identities=14%  Similarity=0.174  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC------------------Cce
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY------------------LIL   93 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~------------------~~i   93 (252)
                      ...+...+.   ....+++||++|++.|.+.+          +++. .+ ..+++.+|.                  .+|
T Consensus        47 ~g~~L~~L~---~~~~~k~iLEiGT~~GySal----------~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i  113 (219)
T COG4122          47 TGALLRLLA---RLSGPKRILEIGTAIGYSAL----------WMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRI  113 (219)
T ss_pred             HHHHHHHHH---HhcCCceEEEeecccCHHHH----------HHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceE
Confidence            444445453   45678999999999995554          4443 22 357999999                  568


Q ss_pred             EEEE-ccccccCC---CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          94 EVIQ-NKIENVEL---PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        94 ~~~~-~d~~~~~~---~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .++. +|..+...   .++||+|+...      ...+...+|..+.++|+|||++++.+.-
T Consensus       114 ~~~~~gdal~~l~~~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl  168 (219)
T COG4122         114 ELLLGGDALDVLSRLLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNVL  168 (219)
T ss_pred             EEEecCcHHHHHHhccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence            8888 47765533   38999998733      2346778899999999999999998754

>KOG1501|consensus

Probab=98.20  E-value=2e-06  Score=80.11  Aligned_cols=126  Identities=28%  Similarity=0.349  Sum_probs=94.2

Q ss_pred             HHhccHHHHHHHHHHHHhC----CCCC-CC-CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------
Q psy9773          26 LMLDDTVRNEAYRAAICDN----PNIF-AG-KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------   90 (252)
Q Consensus        26 ~~l~~~~~~~~~~~~l~~~----~~~~-~~-~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------   90 (252)
                      .|+.|..|+.+|+..|...    .+.. .| .-|||+|+|||  ++        ++.+++.|+.+|+|++.         
T Consensus        37 DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTG--LL--------SmMAvragaD~vtA~EvfkPM~d~ar  106 (636)
T KOG1501|consen   37 DMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTG--LL--------SMMAVRAGADSVTACEVFKPMVDLAR  106 (636)
T ss_pred             HHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCcc--HH--------HHHHHHhcCCeEEeehhhchHHHHHH
Confidence            4889989988887776543    2221 22 35899999999  99        99999999989999998         


Q ss_pred             ---------CceEEEEccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCCCCh
Q psy9773          91 ---------LILEVIQNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSP  159 (252)
Q Consensus        91 ---------~~i~~~~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~~  159 (252)
                               ++|+++.....++...  -..|+++...+..-+..+..+..+=.+..++++||...++...+.|+.+....
T Consensus       107 kI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~  186 (636)
T KOG1501|consen  107 KIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVEST  186 (636)
T ss_pred             HHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhh
Confidence                     6788887766666443  23788877554444445555666666777888999999999999998888776


Q ss_pred             hH
Q psy9773         160 EI  161 (252)
Q Consensus       160 ~~  161 (252)
                      .+
T Consensus       187 ~l  188 (636)
T KOG1501|consen  187 FL  188 (636)
T ss_pred             hh
Confidence            53

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.19  E-value=6.4e-06  Score=72.71  Aligned_cols=66  Identities=27%  Similarity=0.382  Sum_probs=51.7

Q ss_pred             HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccC
Q psy9773          40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVE  104 (252)
Q Consensus        40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~  104 (252)
                      .+.......++.+|||+|||+|  .+        +..+++.+ .+++++|+               .++.++++|+..++
T Consensus        20 ~iv~~~~~~~~~~VLEIG~G~G--~l--------t~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~   88 (258)
T PRK14896         20 RIVEYAEDTDGDPVLEIGPGKG--AL--------TDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD   88 (258)
T ss_pred             HHHHhcCCCCcCeEEEEeCccC--HH--------HHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC
Confidence            3443345677899999999999  77        77777774 57999999               46889999998876


Q ss_pred             CCCceeEEEeccc
Q psy9773         105 LPEKVDIIVSEWM  117 (252)
Q Consensus       105 ~~~~fDlIv~~~~  117 (252)
                      ++ .||.|+++..
T Consensus        89 ~~-~~d~Vv~NlP  100 (258)
T PRK14896         89 LP-EFNKVVSNLP  100 (258)
T ss_pred             ch-hceEEEEcCC
Confidence            55 5899999664

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.17  E-value=2.6e-05  Score=69.49  Aligned_cols=108  Identities=15%  Similarity=0.117  Sum_probs=75.4

Q ss_pred             HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC-----------------Cc-eEE
Q psy9773          36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY-----------------LI-LEV   95 (252)
Q Consensus        36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~-----------------~~-i~~   95 (252)
                      .+..++..+......-+||||+||.|+..+         -.+...+  +.++.-.|.                 .. ++|
T Consensus       122 ~i~~ai~~L~~~g~pvrIlDIAaG~GRYvl---------Dal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f  192 (311)
T PF12147_consen  122 LIRQAIARLREQGRPVRILDIAAGHGRYVL---------DALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARF  192 (311)
T ss_pred             HHHHHHHHHHhcCCceEEEEeccCCcHHHH---------HHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEE
Confidence            344444443444566799999999998776         2233332  246777777                 34 499


Q ss_pred             EEccccccCC----CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773          96 IQNKIENVEL----PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus        96 ~~~d~~~~~~----~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      .++|+.+...    ...+++++.+.+...+++...+...|..+.++|.|||+|+.+.-..|
T Consensus       193 ~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH  253 (311)
T PF12147_consen  193 EQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH  253 (311)
T ss_pred             EecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence            9999877632    14579999988766665555567789999999999999998875433

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.16  E-value=5.6e-06  Score=70.82  Aligned_cols=90  Identities=12%  Similarity=0.165  Sum_probs=53.5

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------------------CceEEEEc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------------------LILEVIQN   98 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------------------~~i~~~~~   98 (252)
                      ....++...+|||||.|+..+         ..++..++++++||++                          .++.+.++
T Consensus        38 ~~l~~~dvF~DlGSG~G~~v~---------~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g  108 (205)
T PF08123_consen   38 LNLTPDDVFYDLGSGVGNVVF---------QAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG  108 (205)
T ss_dssp             TT--TT-EEEEES-TTSHHHH---------HHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred             hCCCCCCEEEECCCCCCHHHH---------HHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence            457788999999999995444         2334466777999999                          56778888


Q ss_pred             cccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773          99 KIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus        99 d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      |+.+.+..    ...|+|+++..   .+. +++...|..+...|++|.+++..
T Consensus       109 dfl~~~~~~~~~s~AdvVf~Nn~---~F~-~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  109 DFLDPDFVKDIWSDADVVFVNNT---CFD-PDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             -TTTHHHHHHHGHC-SEEEE--T---TT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             CccccHhHhhhhcCCCEEEEecc---ccC-HHHHHHHHHHHhcCCCCCEEEEC
Confidence            88765432    45899999665   223 35666667777889999888754

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.15  E-value=4.2e-06  Score=73.58  Aligned_cols=89  Identities=15%  Similarity=0.058  Sum_probs=65.0

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC------------------CceEEEEccccccCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY------------------LILEVIQNKIENVEL  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~  105 (252)
                      .....++||+||+++|.+++          .+++ .+ ..+++++|.                  ++|+++.+++.+.-.
T Consensus        76 ~~~~ak~iLEiGT~~GySal----------~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~  145 (247)
T PLN02589         76 KLINAKNTMEIGVYTGYSLL----------ATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD  145 (247)
T ss_pred             HHhCCCEEEEEeChhhHHHH----------HHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH
Confidence            34567899999999996555          3332 11 247999998                  689999999866521


Q ss_pred             --------CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 --------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 --------~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                              .++||+|+...-      ......++..+.++|+|||++++...-
T Consensus       146 ~l~~~~~~~~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl  192 (247)
T PLN02589        146 QMIEDGKYHGTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTL  192 (247)
T ss_pred             HHHhccccCCcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence                    258999988432      245667788888999999999987643

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.14  E-value=1.3e-05  Score=67.05  Aligned_cols=105  Identities=20%  Similarity=0.200  Sum_probs=65.5

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-C---------cEEEeeC-------------
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-L---------DHYAPQY-------------   90 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~---------~v~gvD~-------------   90 (252)
                      ...+..+|.+.....++..|||.-||+|  ++        .+.++..+. .         +++|+|+             
T Consensus        13 ~~~lA~~ll~la~~~~~~~vlDP~CGsG--ti--------liEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~   82 (179)
T PF01170_consen   13 RPTLAAALLNLAGWRPGDVVLDPFCGSG--TI--------LIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLK   82 (179)
T ss_dssp             -HHHHHHHHHHTT--TTS-EEETT-TTS--HH--------HHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCCCEEeecCCCCC--HH--------HHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHH
Confidence            3456666777777888999999999999  66        444444322 2         2789999             


Q ss_pred             -----CceEEEEccccccCCC-CceeEEEecccccccCC-h----hhHHHHHHHHhccccCCeEEEeec
Q psy9773          91 -----LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLH-E----SMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        91 -----~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~-~----~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                           ..+.+.++|+..+++. +++|+|++++-...-.. .    .-...++..+.++|++...+++..
T Consensus        83 ~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~  151 (179)
T PF01170_consen   83 AAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS  151 (179)
T ss_dssp             HTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred             hcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence                 4688999999999944 89999999664221111 1    124566788889999954554443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.12  E-value=7.9e-06  Score=72.68  Aligned_cols=65  Identities=25%  Similarity=0.273  Sum_probs=50.3

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------CceEEEEccccccCCC
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LILEVIQNKIENVELP  106 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~i~~~~~d~~~~~~~  106 (252)
                      +.......++.+|||+|||+|  .+        +..++..+. +|+|+|+              .++.++++|+..++++
T Consensus        34 i~~~l~~~~~~~VLEiG~G~G--~l--------t~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~  102 (272)
T PRK00274         34 IVDAAGPQPGDNVLEIGPGLG--AL--------TEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLS  102 (272)
T ss_pred             HHHhcCCCCcCeEEEeCCCcc--HH--------HHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHH
Confidence            333345678889999999999  66        677777764 8999999              3788999999988765


Q ss_pred             Cc-eeEEEecc
Q psy9773         107 EK-VDIIVSEW  116 (252)
Q Consensus       107 ~~-fDlIv~~~  116 (252)
                      .. ++.||++.
T Consensus       103 ~~~~~~vv~Nl  113 (272)
T PRK00274        103 ELQPLKVVANL  113 (272)
T ss_pred             HcCcceEEEeC
Confidence            32 58888865

>KOG0822|consensus

Probab=98.10  E-value=8.1e-06  Score=77.58  Aligned_cols=104  Identities=29%  Similarity=0.423  Sum_probs=83.4

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC-----------------CceEEEEccccccCCC-Cce
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY-----------------LILEVIQNKIENVELP-EKV  109 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~-----------------~~i~~~~~d~~~~~~~-~~f  109 (252)
                      -.+|+-+|+|.|  .+     |+.++.+++...  .++++++.                 .+++++.+|++.++.| .+.
T Consensus       368 ~tVimvlGaGRG--PL-----v~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~  440 (649)
T KOG0822|consen  368 TTVIMVLGAGRG--PL-----VDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQA  440 (649)
T ss_pred             eEEEEEecCCCc--cH-----HHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhc
Confidence            357899999999  76     455555555322  35788877                 7899999999999987 899


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCCCChhH
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI  161 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~~~~  161 (252)
                      |++|+...+.+..++-.+ ..|..+.+.|+|+|+.++...+.|.+|+....+
T Consensus       441 DI~VSELLGSFGDNELSP-ECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l  491 (649)
T KOG0822|consen  441 DIIVSELLGSFGDNELSP-ECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKL  491 (649)
T ss_pred             cchHHHhhccccCccCCH-HHHHHHHhhcCCCceEccchhhhhhcccccHHH
Confidence            999998776666666544 577888899999999999999999999988764

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.06  E-value=1.7e-05  Score=66.78  Aligned_cols=100  Identities=17%  Similarity=0.276  Sum_probs=69.3

Q ss_pred             HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEcc
Q psy9773          36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNK   99 (252)
Q Consensus        36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d   99 (252)
                      .+.+.+..+.....|++|||+|+|+|  +.        ++.+++.|++.|++.|+                -.|.+...|
T Consensus        66 ~lAR~i~~~PetVrgkrVLd~gagsg--Lv--------aIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d  135 (218)
T COG3897          66 VLARYIDDHPETVRGKRVLDLGAGSG--LV--------AIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHAD  135 (218)
T ss_pred             HHHHHHhcCccccccceeeecccccC--hH--------HHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeecc
Confidence            35566776677888999999999999  88        88899999999999988                345566666


Q ss_pred             ccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         100 IENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +..  .+..||+|++..+   +.+.....+++.-..++...|-.+++..+.
T Consensus       136 ~~g--~~~~~Dl~LagDl---fy~~~~a~~l~~~~~~l~~~g~~vlvgdp~  181 (218)
T COG3897         136 LIG--SPPAFDLLLAGDL---FYNHTEADRLIPWKDRLAEAGAAVLVGDPG  181 (218)
T ss_pred             ccC--CCcceeEEEeece---ecCchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence            655  3467999998554   333334445555333344455555555554

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.06  E-value=1.6e-05  Score=69.09  Aligned_cols=86  Identities=19%  Similarity=0.185  Sum_probs=63.5

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccC---CC-Cc
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVE---LP-EK  108 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~---~~-~~  108 (252)
                      ..+||||||.|..+          ..+|.. +-..++||++                 .|+.+++.|+..+.   ++ ++
T Consensus        50 pi~lEIGfG~G~~l----------~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~s  119 (227)
T COG0220          50 PIVLEIGFGMGEFL----------VEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGS  119 (227)
T ss_pred             cEEEEECCCCCHHH----------HHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCC
Confidence            58999999999443          344444 3468999999                 48999999998772   23 59


Q ss_pred             eeEEEecccccccCChh--------hHHHHHHHHhccccCCeEEEeecc
Q psy9773         109 VDIIVSEWMGFYLLHES--------MIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~--------~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .|-|+.+.-.   +|..        --..++..+.+.|+|||.|.+.+-
T Consensus       120 l~~I~i~FPD---PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220         120 LDKIYINFPD---PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             eeEEEEECCC---CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence            9999874332   2222        345788899999999999998763

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.05  E-value=4.1e-05  Score=73.17  Aligned_cols=95  Identities=19%  Similarity=0.162  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-c-CCCcEEEeeC-----------------CceEEEEccccccC--
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-V-HPLDHYAPQY-----------------LILEVIQNKIENVE--  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~--  104 (252)
                      ...+|.+|||++||.|+=+          ..++. . +...+++.|+                 .++.+...|...+.  
T Consensus       110 ~~~pg~~VLD~CAAPGgKT----------t~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~  179 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKT----------TQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA  179 (470)
T ss_pred             CCCCCCEEEEeCCCccHHH----------HHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh
Confidence            4578899999999999543          33333 2 2247999999                 56778888887663  


Q ss_pred             CCCceeEEEecccc---cccCChhh----------------HHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LPEKVDIIVSEWMG---FYLLHESM----------------IDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~~~fDlIv~~~~~---~~l~~~~~----------------~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++..||.|+++.-.   ..+...++                -..+|..+.++|+|||+|+-++++
T Consensus       180 ~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        180 LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence            23679999962211   11211111                157888889999999999988875

>PLN02823 spermine synthase

Probab=98.03  E-value=1.8e-05  Score=72.53  Aligned_cols=91  Identities=20%  Similarity=0.111  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------------CceEEEEccccccCC-
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------------LILEVIQNKIENVEL-  105 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------------~~i~~~~~d~~~~~~-  105 (252)
                      .+++||.||+|.|  ..        +..+.+. +..+++.+|+                     ++++++.+|...+-. 
T Consensus       103 ~pk~VLiiGgG~G--~~--------~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~  172 (336)
T PLN02823        103 NPKTVFIMGGGEG--ST--------AREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK  172 (336)
T ss_pred             CCCEEEEECCCch--HH--------HHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh
Confidence            5679999999999  55        4555553 3467999999                     467888888887632 


Q ss_pred             -CCceeEEEecccccc---cCChhhHHHHHH-HHhccccCCeEEEeecc
Q psy9773         106 -PEKVDIIVSEWMGFY---LLHESMIDSVIF-ARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 -~~~fDlIv~~~~~~~---l~~~~~~~~~l~-~l~~~LkpgG~lv~~~~  149 (252)
                       .++||+|++......   ....---..++. .+.+.|+|||++++...
T Consensus       173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~  221 (336)
T PLN02823        173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG  221 (336)
T ss_pred             CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence             268999999642110   000001235666 78899999999987654

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.03  E-value=2.6e-05  Score=64.22  Aligned_cols=106  Identities=14%  Similarity=0.118  Sum_probs=75.4

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC------------CceEEEEcc
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY------------LILEVIQNK   99 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~------------~~i~~~~~d   99 (252)
                      ...+.+.+........|.-||++|.|||  .+        +....++|  ...+++++.            +.++++.+|
T Consensus        33 Ss~lA~~M~s~I~pesglpVlElGPGTG--V~--------TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gd  102 (194)
T COG3963          33 SSILARKMASVIDPESGLPVLELGPGTG--VI--------TKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGD  102 (194)
T ss_pred             cHHHHHHHHhccCcccCCeeEEEcCCcc--Hh--------HHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccc
Confidence            4555666665555667789999999999  44        44444444  357999988            678899999


Q ss_pred             ccccCC--C----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         100 IENVEL--P----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~~~--~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.++..  .    ..||.|||..-+-.++ .....++|..+...|.+||.++--...
T Consensus       103 a~~l~~~l~e~~gq~~D~viS~lPll~~P-~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         103 AFDLRTTLGEHKGQFFDSVISGLPLLNFP-MHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             hhhHHHHHhhcCCCeeeeEEeccccccCc-HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            988852  1    5699999944322222 224668899999999999999865543

>KOG2940|consensus

Probab=98.02  E-value=8e-06  Score=70.49  Aligned_cols=86  Identities=15%  Similarity=0.148  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------C--ceEEEEccccccCCC-CceeEEE
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------L--ILEVIQNKIENVELP-EKVDIIV  113 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~--~i~~~~~d~~~~~~~-~~fDlIv  113 (252)
                      ...++|+|||-|  .+        +..+...+..+++-+|.             +  ......+|-..+++. +++|+|+
T Consensus        73 fp~a~diGcs~G--~v--------~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLii  142 (325)
T KOG2940|consen   73 FPTAFDIGCSLG--AV--------KRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLII  142 (325)
T ss_pred             Ccceeecccchh--hh--------hHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhh
Confidence            357999999999  66        55555555667777776             2  244567888888877 8999999


Q ss_pred             ecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       114 ~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ++..+|+.   .++...+.++...|||+|.|+-+-
T Consensus       143 sSlslHW~---NdLPg~m~~ck~~lKPDg~Fiasm  174 (325)
T KOG2940|consen  143 SSLSLHWT---NDLPGSMIQCKLALKPDGLFIASM  174 (325)
T ss_pred             hhhhhhhh---ccCchHHHHHHHhcCCCccchhHH
Confidence            98876666   677788899999999999998653

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.01  E-value=6e-05  Score=66.20  Aligned_cols=64  Identities=31%  Similarity=0.421  Sum_probs=48.6

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCC
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVEL  105 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~  105 (252)
                      +.......++.+|||+|||+|  .+        +..++..+ ..++++|+               .++.++.+|+..+++
T Consensus        21 i~~~~~~~~~~~VLEiG~G~G--~l--------t~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~   89 (253)
T TIGR00755        21 IVEAANVLEGDVVLEIGPGLG--AL--------TEPLLKRA-KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL   89 (253)
T ss_pred             HHHhcCCCCcCEEEEeCCCCC--HH--------HHHHHHhC-CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh
Confidence            333345667899999999999  77        77777776 46999999               468899999988876


Q ss_pred             CCcee---EEEecc
Q psy9773         106 PEKVD---IIVSEW  116 (252)
Q Consensus       106 ~~~fD---lIv~~~  116 (252)
                      + .+|   +|+++.
T Consensus        90 ~-~~d~~~~vvsNl  102 (253)
T TIGR00755        90 P-DFPKQLKVVSNL  102 (253)
T ss_pred             h-HcCCcceEEEcC
Confidence            5 456   777754

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.01  E-value=2.2e-05  Score=67.54  Aligned_cols=82  Identities=22%  Similarity=0.285  Sum_probs=62.6

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCCCCc-ee
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVELPEK-VD  110 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~-fD  110 (252)
                      +.+++|||+|.|  .-        ++.++- .+..+++-+|.                 .+++++++.+.++..... ||
T Consensus        68 ~~~~~DIGSGaG--fP--------GipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D  137 (215)
T COG0357          68 AKRVLDIGSGAG--FP--------GIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYD  137 (215)
T ss_pred             CCEEEEeCCCCC--Cc--------hhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCc
Confidence            689999999999  44        444442 22346999998                 779999999999975544 99


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +|+|.-+       ..+..++.-+..++++||.++...
T Consensus       138 ~vtsRAv-------a~L~~l~e~~~pllk~~g~~~~~k  168 (215)
T COG0357         138 VVTSRAV-------ASLNVLLELCLPLLKVGGGFLAYK  168 (215)
T ss_pred             EEEeehc-------cchHHHHHHHHHhcccCCcchhhh
Confidence            9998554       466777888899999999876443

>KOG1331|consensus

Probab=98.01  E-value=6.2e-06  Score=73.07  Aligned_cols=89  Identities=19%  Similarity=0.106  Sum_probs=70.1

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------Cce-EEEEccccccCCC-CceeEEEe
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LIL-EVIQNKIENVELP-EKVDIIVS  114 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i-~~~~~d~~~~~~~-~~fDlIv~  114 (252)
                      ...+..+||+|||.|....            .. +...++|+|.          .+. .+..+|+..++.+ .+||.+++
T Consensus        43 ~~~gsv~~d~gCGngky~~------------~~-p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ls  109 (293)
T KOG1331|consen   43 QPTGSVGLDVGCGNGKYLG------------VN-PLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALS  109 (293)
T ss_pred             cCCcceeeecccCCcccCc------------CC-CcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchh
Confidence            4558999999999993322            11 2234667776          344 6888999999888 88999999


Q ss_pred             cccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         115 EWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       115 ~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ..+.||+........++.++.+.|+|||...+..
T Consensus       110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv  143 (293)
T KOG1331|consen  110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYV  143 (293)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            8888999888788899999999999999977655

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.00  E-value=1.4e-05  Score=74.56  Aligned_cols=83  Identities=12%  Similarity=0.032  Sum_probs=62.7

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCC-CCcee
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVEL-PEKVD  110 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~-~~~fD  110 (252)
                      +.+|||++||+|  .+        ++.++. .++..|+++|+                 .++.+.++|+..+.. .+.||
T Consensus        58 ~~~vLDl~aGsG--~~--------~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD  127 (382)
T PRK04338         58 RESVLDALSASG--IR--------GIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFD  127 (382)
T ss_pred             CCEEEECCCccc--HH--------HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCC
Confidence            568999999999  77        777655 45568999999                 345688899877643 46799


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +|++++.       .....++..+.+.+++||+++++..
T Consensus       128 ~V~lDP~-------Gs~~~~l~~al~~~~~~gilyvSAt  159 (382)
T PRK04338        128 VVDIDPF-------GSPAPFLDSAIRSVKRGGLLCVTAT  159 (382)
T ss_pred             EEEECCC-------CCcHHHHHHHHHHhcCCCEEEEEec
Confidence            9998763       2334567775677899999999853

>KOG3178|consensus

Probab=97.99  E-value=4.1e-05  Score=69.72  Aligned_cols=86  Identities=19%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCCCCceeEEEecc
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVELPEKVDIIVSEW  116 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~~~~fDlIv~~~  116 (252)
                      -...+|+|.|.|+.+-          .+.... .++-++++             +.|..+-+|+.+. .| +-|+||+.|
T Consensus       178 v~~avDvGgGiG~v~k----------~ll~~f-p~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P-~~daI~mkW  244 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLK----------NLLSKY-PHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TP-KGDAIWMKW  244 (342)
T ss_pred             CceEEEcCCcHhHHHH----------HHHHhC-CCCceeecCHHHHHhhhhhhcCCcceeccccccc-CC-CcCeEEEEe
Confidence            3789999999994443          333332 23555555             2367777787666 33 457999999


Q ss_pred             cccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         117 MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       117 ~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++|++.+. ++.++|+++...|+|||.+++..+
T Consensus       245 iLhdwtDe-dcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  245 ILHDWTDE-DCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             ecccCChH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence            99998665 799999999999999999998775

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.96  E-value=2.4e-05  Score=66.65  Aligned_cols=83  Identities=22%  Similarity=0.178  Sum_probs=56.1

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC------------------CceEEEEccccccCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~  106 (252)
                      ...+|.+|||+.||.|  .+        ++.+++ ..++.|+|+|+                  .++..+++|...+...
T Consensus        98 ~v~~~e~VlD~faGIG--~f--------~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~  167 (200)
T PF02475_consen   98 LVKPGEVVLDMFAGIG--PF--------SLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE  167 (200)
T ss_dssp             C--TT-EEEETT-TTT--TT--------HHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T
T ss_pred             cCCcceEEEEccCCcc--HH--------HHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc
Confidence            3678999999999999  66        677777 33467999999                  6788999999998767


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEE
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMY  145 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv  145 (252)
                      +.||-|++....       ....+|..+.+++++||++-
T Consensus       168 ~~~drvim~lp~-------~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  168 GKFDRVIMNLPE-------SSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             T-EEEEEE--TS-------SGGGGHHHHHHHEEEEEEEE
T ss_pred             cccCEEEECChH-------HHHHHHHHHHHHhcCCcEEE
Confidence            889999885431       12246677788889999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.95  E-value=3.3e-05  Score=70.61  Aligned_cols=77  Identities=14%  Similarity=0.053  Sum_probs=61.8

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCC-CCceeEEEec
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVEL-PEKVDIIVSE  115 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~-~~~fDlIv~~  115 (252)
                      ..+|.++|||||++|  -+        +..+.++|+ +|+|||.          ++|..+..|...+.. .+.+|+++|.
T Consensus       209 ~~~g~~vlDLGAsPG--GW--------T~~L~~rG~-~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcD  277 (357)
T PRK11760        209 LAPGMRAVDLGAAPG--GW--------TYQLVRRGM-FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCD  277 (357)
T ss_pred             cCCCCEEEEeCCCCc--HH--------HHHHHHcCC-EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEe
Confidence            468899999999999  66        778888886 7999999          678888888877765 4789999997


Q ss_pred             ccccccCChhhHHHHHHHHhccccCC
Q psy9773         116 WMGFYLLHESMIDSVIFARDKFLKPE  141 (252)
Q Consensus       116 ~~~~~l~~~~~~~~~l~~l~~~Lkpg  141 (252)
                      .+       ..+..+..-+.++|..|
T Consensus       278 mv-------e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        278 MV-------EKPARVAELMAQWLVNG  296 (357)
T ss_pred             cc-------cCHHHHHHHHHHHHhcC
Confidence            65       34556667777777665

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.92  E-value=4.4e-05  Score=70.48  Aligned_cols=81  Identities=11%  Similarity=0.007  Sum_probs=58.4

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC-------
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP-------  106 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~-------  106 (252)
                      .+|||+|||+|  .+        ++.+++. +.+|+|+|+                 .++.++++|+.++...       
T Consensus       199 ~~vlDl~~G~G--~~--------sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  267 (353)
T TIGR02143       199 GDLLELYCGNG--NF--------SLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREF  267 (353)
T ss_pred             CcEEEEecccc--HH--------HHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccc
Confidence            47999999999  88        7777665 468999999                 4688999998764211       


Q ss_pred             ----------CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 ----------EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ----------~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                                ..||+|+.++--     ......++..+.+   |++++|+++..
T Consensus       268 ~~~~~~~~~~~~~d~v~lDPPR-----~G~~~~~l~~l~~---~~~ivYvsC~p  313 (353)
T TIGR02143       268 RRLKGIDLKSYNCSTIFVDPPR-----AGLDPDTCKLVQA---YERILYISCNP  313 (353)
T ss_pred             ccccccccccCCCCEEEECCCC-----CCCcHHHHHHHHc---CCcEEEEEcCH
Confidence                      137999997742     2223455555543   79999999865

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.92  E-value=6.3e-05  Score=67.37  Aligned_cols=94  Identities=18%  Similarity=0.076  Sum_probs=67.6

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccCCC--
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVELP--  106 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~~~--  106 (252)
                      ++||-+|.|.|  ..        ...+.++. ..+++.+|+                     +|+.++..|...+-..  
T Consensus        78 k~VLiiGgGdG--~t--------lRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~  147 (282)
T COG0421          78 KRVLIIGGGDG--GT--------LREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE  147 (282)
T ss_pred             CeEEEECCCcc--HH--------HHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence            69999999999  44        44566654 468999998                     6778888888877432  


Q ss_pred             CceeEEEecccccccCChh-hHHHHHHHHhccccCCeEEEeeccccccC
Q psy9773         107 EKVDIIVSEWMGFYLLHES-MIDSVIFARDKFLKPEGVMYPYKCILHSA  154 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~-~~~~~l~~l~~~LkpgG~lv~~~~~~~~~  154 (252)
                      .+||+|++......-+... --..++..+++.|+++|+++..+.+.+..
T Consensus       148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~  196 (282)
T COG0421         148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ  196 (282)
T ss_pred             CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence            5799999955432111000 23678999999999999999996554433

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.90  E-value=5.7e-05  Score=69.96  Aligned_cols=81  Identities=12%  Similarity=0.050  Sum_probs=58.4

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC--------
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL--------  105 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~--------  105 (252)
                      .+|||++||+|  .+        ++.+++. +++|+|+|+                 .++.++.+|+.++..        
T Consensus       208 ~~vLDl~~G~G--~~--------sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  276 (362)
T PRK05031        208 GDLLELYCGNG--NF--------TLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREF  276 (362)
T ss_pred             CeEEEEecccc--HH--------HHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccc
Confidence            57999999999  77        7766655 568999999                 478899999876411        


Q ss_pred             ---------CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 ---------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ---------~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                               ..+||+|+.++--     ......++..+.+   |++++|+++..
T Consensus       277 ~~~~~~~~~~~~~D~v~lDPPR-----~G~~~~~l~~l~~---~~~ivyvSC~p  322 (362)
T PRK05031        277 NRLKGIDLKSYNFSTIFVDPPR-----AGLDDETLKLVQA---YERILYISCNP  322 (362)
T ss_pred             cccccccccCCCCCEEEECCCC-----CCCcHHHHHHHHc---cCCEEEEEeCH
Confidence                     1148999997742     1223455555543   78999998865

>KOG3420|consensus

Probab=97.90  E-value=4.2e-05  Score=61.72  Aligned_cols=68  Identities=21%  Similarity=0.230  Sum_probs=55.5

Q ss_pred             HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEcccccc
Q psy9773          40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENV  103 (252)
Q Consensus        40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~  103 (252)
                      .|........|++++|+|||.|  .+        +...+..++..|+|+|+                -++.++++|+.++
T Consensus        39 ~Ih~TygdiEgkkl~DLgcgcG--mL--------s~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildl  108 (185)
T KOG3420|consen   39 TIHNTYGDIEGKKLKDLGCGCG--ML--------SIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDL  108 (185)
T ss_pred             HHHhhhccccCcchhhhcCchh--hh--------HHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccch
Confidence            3444456689999999999999  77        76666677788999999                4678999999999


Q ss_pred             CCC-CceeEEEeccc
Q psy9773         104 ELP-EKVDIIVSEWM  117 (252)
Q Consensus       104 ~~~-~~fDlIv~~~~  117 (252)
                      .+. +.||.++.++-
T Consensus       109 e~~~g~fDtaviNpp  123 (185)
T KOG3420|consen  109 ELKGGIFDTAVINPP  123 (185)
T ss_pred             hccCCeEeeEEecCC
Confidence            777 78999998764

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.89  E-value=3e-05  Score=69.87  Aligned_cols=66  Identities=29%  Similarity=0.358  Sum_probs=50.2

Q ss_pred             HHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccc
Q psy9773          39 AAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKI  100 (252)
Q Consensus        39 ~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~  100 (252)
                      ..+.......++.+|||+|||+|  .+        +..++..+ .+|+|+|+                  .+++++++|+
T Consensus        26 ~~Iv~~~~~~~~~~VLEIG~G~G--~L--------T~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da   94 (294)
T PTZ00338         26 DKIVEKAAIKPTDTVLEIGPGTG--NL--------TEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA   94 (294)
T ss_pred             HHHHHhcCCCCcCEEEEecCchH--HH--------HHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence            33444456678899999999999  66        66666664 57999999                  3588999999


Q ss_pred             cccCCCCceeEEEecc
Q psy9773         101 ENVELPEKVDIIVSEW  116 (252)
Q Consensus       101 ~~~~~~~~fDlIv~~~  116 (252)
                      .....+ .||+|+++.
T Consensus        95 l~~~~~-~~d~VvaNl  109 (294)
T PTZ00338         95 LKTEFP-YFDVCVANV  109 (294)
T ss_pred             hhhccc-ccCEEEecC
Confidence            877553 689998855

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.87  E-value=3.3e-05  Score=71.83  Aligned_cols=82  Identities=13%  Similarity=0.035  Sum_probs=65.2

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC-----------------CceEEEEccccccCCC--Cc
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY-----------------LILEVIQNKIENVELP--EK  108 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~--~~  108 (252)
                      +.+|||+.||+|  .+        ++.++..  |+..|+++|+                 .++.++++|+..+...  ..
T Consensus        45 ~~~vLD~faGsG--~r--------gir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~  114 (374)
T TIGR00308        45 YINIADALSASG--IR--------AIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRK  114 (374)
T ss_pred             CCEEEECCCchh--HH--------HHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCC
Confidence            468999999999  88        8888775  6789999999                 3467888888877433  57


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ||+|+.++.       ..+..++..+.+.+++||+|+++.
T Consensus       115 fDvIdlDPf-------Gs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       115 FHVIDIDPF-------GTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             CCEEEeCCC-------CCcHHHHHHHHHhcccCCEEEEEe
Confidence            999988662       233467888888999999999985

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG1661|consensus

Probab=97.87  E-value=3.6e-05  Score=65.55  Aligned_cols=84  Identities=19%  Similarity=0.127  Sum_probs=57.6

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHh-hcCC--CcEEEeeC---------------------------CceEE
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCT-KVHP--LDHYAPQY---------------------------LILEV   95 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a-~~g~--~~v~gvD~---------------------------~~i~~   95 (252)
                      +..+|.+.||+|+|||  .|        +-.++ ..++  ..+.|||.                           .++.+
T Consensus        79 ~L~pG~s~LdvGsGSG--YL--------t~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i  148 (237)
T KOG1661|consen   79 HLQPGASFLDVGSGSG--YL--------TACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI  148 (237)
T ss_pred             hhccCcceeecCCCcc--HH--------HHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence            4789999999999999  55        44444 2333  23377776                           56778


Q ss_pred             EEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773          96 IQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        96 ~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +.+|....... .+||.|++--.         ...+..++...|+|||++++-.
T Consensus       149 vvGDgr~g~~e~a~YDaIhvGAa---------a~~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  149 VVGDGRKGYAEQAPYDAIHVGAA---------ASELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             EeCCccccCCccCCcceEEEccC---------ccccHHHHHHhhccCCeEEEee
Confidence            89999888666 88999988321         1223344556778888877643

>KOG3191|consensus

Probab=97.82  E-value=0.00017  Score=60.18  Aligned_cols=91  Identities=19%  Similarity=0.262  Sum_probs=61.6

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC----------------CceEEEEccccccCCCCceeE
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY----------------LILEVIQNKIENVELPEKVDI  111 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fDl  111 (252)
                      ...+|++|||+|  ..        +-++++ .+ ..-+.++|+                -++..++.|+.+--.+++.|+
T Consensus        44 ~~i~lEIG~GSG--vv--------stfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDv  113 (209)
T KOG3191|consen   44 PEICLEIGCGSG--VV--------STFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDV  113 (209)
T ss_pred             ceeEEEecCCcc--hH--------HHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccE
Confidence            678999999999  55        445444 33 245778898                346778888876655588999


Q ss_pred             EEecccccc------------------cCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         112 IVSEWMGFY------------------LLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       112 Iv~~~~~~~------------------l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++.++-.--                  -....-...++..+-.+|.|.|.||+....
T Consensus       114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~  170 (209)
T KOG3191|consen  114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR  170 (209)
T ss_pred             EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence            887542100                  011112566777778899999999987643

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.82  E-value=0.00023  Score=63.31  Aligned_cols=59  Identities=22%  Similarity=0.282  Sum_probs=43.7

Q ss_pred             CceEEEEccccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773          91 LILEVIQNKIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus        91 ~~i~~~~~d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      .++....||+..+-.+    ++||+|+..   +++.-..++...|..+.++|||||+.|=..|-.|
T Consensus       144 ~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLly  206 (270)
T PF07942_consen  144 SNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWINFGPLLY  206 (270)
T ss_pred             CceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEEecCCccc
Confidence            3566777888777433    589999873   5566677899999999999999996664444333

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.73  E-value=5.9e-05  Score=66.26  Aligned_cols=93  Identities=18%  Similarity=0.058  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccCC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVEL  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~~  105 (252)
                      ..+++||=||.|.|  ..        +..+.+.. ..+++.+|+                     ++++++.+|...+-.
T Consensus        75 ~~p~~VLiiGgG~G--~~--------~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~  144 (246)
T PF01564_consen   75 PNPKRVLIIGGGDG--GT--------ARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK  144 (246)
T ss_dssp             SST-EEEEEESTTS--HH--------HHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH
T ss_pred             CCcCceEEEcCCCh--hh--------hhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH
Confidence            36799999999999  55        45555554 468999999                     488999999987733


Q ss_pred             --CC-ceeEEEecccccccCCh-hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 --PE-KVDIIVSEWMGFYLLHE-SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 --~~-~fDlIv~~~~~~~l~~~-~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                        .. +||+|+........+.. ---..++..+.+.|+|||+++....+
T Consensus       145 ~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~  193 (246)
T PF01564_consen  145 ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS  193 (246)
T ss_dssp             TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence              25 89999995432111110 12357889999999999999988744

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=0.00014  Score=68.90  Aligned_cols=90  Identities=20%  Similarity=0.108  Sum_probs=69.4

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC-
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP-  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~-  106 (252)
                      ....++.++||+-||.|  ++        ++.++.. .++|+|+++                 .++.|+.+++..+... 
T Consensus       289 ~~~~~~~~vlDlYCGvG--~f--------~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~  357 (432)
T COG2265         289 LELAGGERVLDLYCGVG--TF--------GLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW  357 (432)
T ss_pred             HhhcCCCEEEEeccCCC--hh--------hhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc
Confidence            45567789999999999  88        8888866 478999999                 6699999999888544 


Q ss_pred             ---CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773         107 ---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus       107 ---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                         ..+|+|+.++--..+     -..++..+ ..++|-.++|++++..
T Consensus       358 ~~~~~~d~VvvDPPR~G~-----~~~~lk~l-~~~~p~~IvYVSCNP~  399 (432)
T COG2265         358 WEGYKPDVVVVDPPRAGA-----DREVLKQL-AKLKPKRIVYVSCNPA  399 (432)
T ss_pred             cccCCCCEEEECCCCCCC-----CHHHHHHH-HhcCCCcEEEEeCCHH
Confidence               478999987743333     23455555 5569999999998753

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.70  E-value=0.00012  Score=66.06  Aligned_cols=107  Identities=18%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHh------hcCCCcEEEeeC-------------------
Q psy9773          36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCT------KVHPLDHYAPQY-------------------   90 (252)
Q Consensus        36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a------~~g~~~v~gvD~-------------------   90 (252)
                      .+.+.+.......++.+|||.+||+|+.++        +..-.      .....+++|+|+                   
T Consensus        33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~--------~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~  104 (311)
T PF02384_consen   33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLV--------AAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN  104 (311)
T ss_dssp             HHHHHHHHHHTT-TTEEEEETT-TTSHHHH--------HHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred             HHHHHHHhhhhccccceeechhhhHHHHHH--------HHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence            344444444456777899999999994443        22110      123357999999                   


Q ss_pred             CceEEEEccccccCCC---CceeEEEeccccccc--C----------------ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          91 LILEVIQNKIENVELP---EKVDIIVSEWMGFYL--L----------------HESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        91 ~~i~~~~~d~~~~~~~---~~fDlIv~~~~~~~l--~----------------~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ....+..+|....+..   ..||+|++++-....  .                ....-..++..+.+.|++||++.+..+
T Consensus       105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence            2345777776555432   589999996543222  0                001123477778899999999877666


Q ss_pred             c
Q psy9773         150 I  150 (252)
Q Consensus       150 ~  150 (252)
                      .
T Consensus       185 ~  185 (311)
T PF02384_consen  185 N  185 (311)
T ss_dssp             H
T ss_pred             c
Confidence            4

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.69  E-value=9.5e-05  Score=71.43  Aligned_cols=91  Identities=15%  Similarity=0.150  Sum_probs=62.8

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccC--CC-C
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVE--LP-E  107 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~--~~-~  107 (252)
                      .+..+||||||.|..++          .+|. .+-..++|+|+                 .|+.+++.|+..+.  ++ +
T Consensus       347 ~~p~~lEIG~G~G~~~~----------~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~  416 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFI----------NQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNN  416 (506)
T ss_pred             CCceEEEECCCchHHHH----------HHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcc
Confidence            45789999999994443          4444 33468999999                 57788888875442  33 7


Q ss_pred             ceeEEEeccccccc--CChh---hHHHHHHHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYL--LHES---MIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l--~~~~---~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++|.|+.+.-.-+.  .|..   --..++..+.++|+|||.+.+.+-
T Consensus       417 sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD  463 (506)
T PRK01544        417 SLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD  463 (506)
T ss_pred             cccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence            89999874432211  0111   345788899999999999998764

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.69  E-value=0.00034  Score=61.84  Aligned_cols=72  Identities=22%  Similarity=0.289  Sum_probs=56.8

Q ss_pred             HHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccc
Q psy9773          38 RAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIEN  102 (252)
Q Consensus        38 ~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~  102 (252)
                      .+.+.......++..||+||+|.|  .+        +..+++.+ .+|+++++               .+++++.+|+-.
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~G--aL--------T~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk   87 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLG--AL--------TEPLLERA-ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALK   87 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCC--HH--------HHHHHhhc-CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhc
Confidence            344445566677899999999999  77        77888886 46999999               678999999999


Q ss_pred             cCCCC--ceeEEEeccccccc
Q psy9773         103 VELPE--KVDIIVSEWMGFYL  121 (252)
Q Consensus       103 ~~~~~--~fDlIv~~~~~~~l  121 (252)
                      ..++.  .++.|+++. .+.+
T Consensus        88 ~d~~~l~~~~~vVaNl-PY~I  107 (259)
T COG0030          88 FDFPSLAQPYKVVANL-PYNI  107 (259)
T ss_pred             CcchhhcCCCEEEEcC-CCcc
Confidence            98885  788998855 3444

>KOG1663|consensus

Probab=97.64  E-value=0.00018  Score=62.09  Aligned_cols=91  Identities=14%  Similarity=0.070  Sum_probs=66.2

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCC--
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVEL--  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~--  105 (252)
                      ....++++||||.=||.+.+        +..++-....+|+++|+                  +.|+++++...+.-.  
T Consensus        70 ~~~~ak~~lelGvfTGySaL--------~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l  141 (237)
T KOG1663|consen   70 RLLNAKRTLELGVFTGYSAL--------AVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL  141 (237)
T ss_pred             HHhCCceEEEEecccCHHHH--------HHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence            35677899999988886666        44333322357999999                  778999888755411  


Q ss_pred             -----CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 -----PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 -----~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                           .++||++|...      +.........++.++||+||++++....
T Consensus       142 ~~~~~~~tfDfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl  185 (237)
T KOG1663|consen  142 LADGESGTFDFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVL  185 (237)
T ss_pred             HhcCCCCceeEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccc
Confidence                 27899998722      2245557888889999999999998743

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.62  E-value=0.00023  Score=64.92  Aligned_cols=60  Identities=13%  Similarity=0.072  Sum_probs=38.1

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------C-----ceEEEE-ccccccC----
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------L-----ILEVIQ-NKIENVE----  104 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~-----~i~~~~-~d~~~~~----  104 (252)
                      .+.++||||||+|++..         +++++....+++|+|+              .     +|.+.. .+...+.    
T Consensus       114 ~~~~vLDIGtGag~I~~---------lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~  184 (321)
T PRK11727        114 ANVRVLDIGVGANCIYP---------LIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII  184 (321)
T ss_pred             CCceEEEecCCccHHHH---------HHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc
Confidence            45799999999994433         3333333357999999              2     455543 3333321    


Q ss_pred             C-CCceeEEEeccc
Q psy9773         105 L-PEKVDIIVSEWM  117 (252)
Q Consensus       105 ~-~~~fDlIv~~~~  117 (252)
                      . .+.||+|+|++-
T Consensus       185 ~~~~~fDlivcNPP  198 (321)
T PRK11727        185 HKNERFDATLCNPP  198 (321)
T ss_pred             ccCCceEEEEeCCC
Confidence            1 268999999875

>KOG1269|consensus

Probab=97.60  E-value=8.4e-05  Score=68.80  Aligned_cols=91  Identities=18%  Similarity=0.202  Sum_probs=71.0

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~  106 (252)
                      ..+.++..++|+|||.|.+          +.+.+......++|++.                  ....++.+|+..-+++
T Consensus       106 ~~~~~~~~~~~~~~g~~~~----------~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fe  175 (364)
T KOG1269|consen  106 ESCFPGSKVLDVGTGVGGP----------SRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFE  175 (364)
T ss_pred             hcCcccccccccCcCcCch----------hHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCC
Confidence            3567778999999999944          44555544456888887                  3344577888888887


Q ss_pred             -CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         107 -EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       107 -~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                       +.||.+.+..+.+|.   +++..++.++.++++|||+++...
T Consensus       176 dn~fd~v~~ld~~~~~---~~~~~~y~Ei~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  176 DNTFDGVRFLEVVCHA---PDLEKVYAEIYRVLKPGGLFIVKE  215 (364)
T ss_pred             ccccCcEEEEeecccC---CcHHHHHHHHhcccCCCceEEeHH
Confidence             899999887766666   888999999999999999999765

>PRK00536 speE spermidine synthase; Provisional

Probab=97.60  E-value=0.00029  Score=62.50  Aligned_cols=85  Identities=18%  Similarity=-0.086  Sum_probs=60.4

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------------CceEEEEccccccCCC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------------~~i~~~~~d~~~~~~~  106 (252)
                      ..+++||=+|.|.|  ..        .....++. .+|+-||+                     +|++++.. +.+ ...
T Consensus        71 ~~pk~VLIiGGGDG--g~--------~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-~~~  137 (262)
T PRK00536         71 KELKEVLIVDGFDL--EL--------AHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-LDI  137 (262)
T ss_pred             CCCCeEEEEcCCch--HH--------HHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-ccC
Confidence            55689999999999  43        44666664 48999999                     56666641 111 112


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                      ++||+||+...    +    ...+.+.+++.|+|||+++....+.+.
T Consensus       138 ~~fDVIIvDs~----~----~~~fy~~~~~~L~~~Gi~v~Qs~sp~~  176 (262)
T PRK00536        138 KKYDLIICLQE----P----DIHKIDGLKRMLKEDGVFISVAKHPLL  176 (262)
T ss_pred             CcCCEEEEcCC----C----ChHHHHHHHHhcCCCcEEEECCCCccc
Confidence            68999998642    1    245678889999999999998766543

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.59  E-value=0.00053  Score=59.13  Aligned_cols=102  Identities=23%  Similarity=0.221  Sum_probs=65.3

Q ss_pred             HHHHHHHHhC---CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------CceEE
Q psy9773          35 EAYRAAICDN---PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------LILEV   95 (252)
Q Consensus        35 ~~~~~~l~~~---~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------~~i~~   95 (252)
                      ..+..++...   .++.+|.+||-||+++|. +.        |...--.| ...|+|++.               +||--
T Consensus        56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGT-TV--------SHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiP  126 (229)
T PF01269_consen   56 SKLAAAILKGLENIPIKPGSKVLYLGAASGT-TV--------SHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIP  126 (229)
T ss_dssp             -HHHHHHHTT-S--S--TT-EEEEETTTTSH-HH--------HHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEE
T ss_pred             hHHHHHHHcCccccCCCCCCEEEEecccCCC-cc--------chhhhccCCCCcEEEEEecchhHHHHHHHhccCCceee
Confidence            3455555432   467889999999999992 22        33333344 247999999               78887


Q ss_pred             EEccccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          96 IQNKIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        96 ~~~d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +-+|++....-    +.+|+|++.-.     ...+..-++.++...||+||.+++....
T Consensus       127 Il~DAr~P~~Y~~lv~~VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa  180 (229)
T PF01269_consen  127 ILEDARHPEKYRMLVEMVDVIFQDVA-----QPDQARIAALNARHFLKPGGHLIISIKA  180 (229)
T ss_dssp             EES-TTSGGGGTTTS--EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             eeccCCChHHhhcccccccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEEEec
Confidence            88898755321    78999988543     2335666777778899999999988654

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.58  E-value=0.0014  Score=49.28  Aligned_cols=83  Identities=18%  Similarity=0.248  Sum_probs=56.0

Q ss_pred             EEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC----------Cc-------eEEEEccccc--cCCCC--ce
Q psy9773          53 VLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY----------LI-------LEVIQNKIEN--VELPE--KV  109 (252)
Q Consensus        53 VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~----------~~-------i~~~~~d~~~--~~~~~--~f  109 (252)
                      ++|+|||+|  ..        . .+.....  ..++++|+          ..       +.+..++...  +++..  .|
T Consensus        52 ~ld~~~g~g--~~--------~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (257)
T COG0500          52 VLDIGCGTG--RL--------A-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASF  120 (257)
T ss_pred             eEEecCCcC--HH--------H-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCce
Confidence            999999999  43        2 2222211  25777777          11       4677778776  55553  79


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |++.+....++.    ....++..+.+.|+|+|.+++....
T Consensus       121 d~~~~~~~~~~~----~~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         121 DLVISLLVLHLL----PPAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             eEEeeeeehhcC----CHHHHHHHHHHhcCCCcEEEEEecc
Confidence            999433322222    2778899999999999999988765

>KOG1709|consensus

Probab=97.57  E-value=0.00043  Score=59.38  Aligned_cols=90  Identities=24%  Similarity=0.333  Sum_probs=68.6

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCC--C-C
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVEL--P-E  107 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~--~-~  107 (252)
                      ..+|.|||.||-|-|  +.        .-....+.+..-+.|+.                .++..+.+-.++...  + +
T Consensus        99 ~tkggrvLnVGFGMg--Ii--------dT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~  168 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMG--II--------DTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDK  168 (271)
T ss_pred             hhCCceEEEeccchH--HH--------HHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcccccc
Confidence            488999999999999  77        66666666666777777                677777777766632  2 7


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .||.|+-...+   ++-.++..+...+.++|||+|.+-+-..
T Consensus       169 ~FDGI~yDTy~---e~yEdl~~~hqh~~rLLkP~gv~SyfNg  207 (271)
T KOG1709|consen  169 HFDGIYYDTYS---ELYEDLRHFHQHVVRLLKPEGVFSYFNG  207 (271)
T ss_pred             CcceeEeechh---hHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence            89999875543   3346888999999999999999865543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.56  E-value=0.0004  Score=69.73  Aligned_cols=114  Identities=16%  Similarity=0.172  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhCCCC-CCCCEEEEEcCCcCchhh-hhcc--------Cccc-----------------hHH--H---hh--
Q psy9773          34 NEAYRAAICDNPNI-FAGKTVLDVGTGTGKSIL-LQGH--------GVDH-----------------HSF--C---TK--   79 (252)
Q Consensus        34 ~~~~~~~l~~~~~~-~~~~~VLDlGcGtG~~~l-l~~~--------~v~~-----------------s~~--~---a~--   79 (252)
                      ...+..+|+....- .++..++|.+||+|  ++ +.++        |..-                 .+.  +   .+  
T Consensus       174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSG--TilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~  251 (702)
T PRK11783        174 KENLAAAILLRSGWPQEGTPLLDPMCGSG--TLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG  251 (702)
T ss_pred             cHHHHHHHHHHcCCCCCCCeEEccCCCcc--HHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence            45566666665554 56789999999999  66 1111        1100                 000  0   00  


Q ss_pred             --cCCCcEEEeeC------------------CceEEEEccccccCCC---CceeEEEeccccc-ccCChhhHHHHHHHHh
Q psy9773          80 --VHPLDHYAPQY------------------LILEVIQNKIENVELP---EKVDIIVSEWMGF-YLLHESMIDSVIFARD  135 (252)
Q Consensus        80 --~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~---~~fDlIv~~~~~~-~l~~~~~~~~~l~~l~  135 (252)
                        ....+++|+|+                  ..+.+.++|+.+++.+   ++||+|++++-.. .+....++..+...+.
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg  331 (702)
T PRK11783        252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG  331 (702)
T ss_pred             ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence              01126999999                  4588999999988654   4699999976421 1222234444444443


Q ss_pred             ccc---cCCeEEEeecc
Q psy9773         136 KFL---KPEGVMYPYKC  149 (252)
Q Consensus       136 ~~L---kpgG~lv~~~~  149 (252)
                      +.|   .+|+.+++.++
T Consensus       332 ~~lk~~~~g~~~~llt~  348 (702)
T PRK11783        332 RRLKQQFGGWNAALFSS  348 (702)
T ss_pred             HHHHHhCCCCeEEEEeC
Confidence            333   48888877665

>KOG0820|consensus

Probab=97.55  E-value=0.00031  Score=62.17  Aligned_cols=70  Identities=24%  Similarity=0.280  Sum_probs=56.2

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEE
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVI   96 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~   96 (252)
                      ......|...+.+.++..||++|.|||  .+        +..+...| ++|+|+++                  +..+++
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTG--nL--------T~~lLe~~-kkVvA~E~Dprmvael~krv~gtp~~~kLqV~  112 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTG--NL--------TVKLLEAG-KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL  112 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCC--HH--------HHHHHHhc-CeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence            334555666688999999999999999  77        77888876 67999998                  568899


Q ss_pred             EccccccCCCCceeEEEecc
Q psy9773          97 QNKIENVELPEKVDIIVSEW  116 (252)
Q Consensus        97 ~~d~~~~~~~~~fDlIv~~~  116 (252)
                      .+|....++| .||++|++.
T Consensus       113 ~gD~lK~d~P-~fd~cVsNl  131 (315)
T KOG0820|consen  113 HGDFLKTDLP-RFDGCVSNL  131 (315)
T ss_pred             ecccccCCCc-ccceeeccC
Confidence            9999888765 688888833

>KOG4589|consensus

Probab=97.55  E-value=0.00031  Score=58.99  Aligned_cols=94  Identities=22%  Similarity=0.231  Sum_probs=62.0

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC------CceEEEEc-cccccC--------CC-
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY------LILEVIQN-KIENVE--------LP-  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~------~~i~~~~~-d~~~~~--------~~-  106 (252)
                      ..+.++.+|||+||..|  .+        +..+.+. ++ ..|.|||+      ..++++++ |+++..        .| 
T Consensus        65 ~~l~p~~~VlD~G~APG--sW--------sQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   65 RFLRPEDTVLDCGAAPG--SW--------SQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             cccCCCCEEEEccCCCC--hH--------HHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCC
Confidence            45678999999999999  76        6666553 23 57999999      55667776 666542        23 


Q ss_pred             CceeEEEecccccc-----cCChhh---HHHHHHHHhccccCCeEEEeec
Q psy9773         107 EKVDIIVSEWMGFY-----LLHESM---IDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       107 ~~fDlIv~~~~~~~-----l~~~~~---~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .++|+|++.+....     ..|...   ...++.-....+.|+|.|++-.
T Consensus       135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~  184 (232)
T KOG4589|consen  135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL  184 (232)
T ss_pred             CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence            67999999654211     111111   1223334457788999999764

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.45  E-value=0.0004  Score=63.68  Aligned_cols=87  Identities=22%  Similarity=0.195  Sum_probs=70.0

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC-C
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP-E  107 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~-~  107 (252)
                      ...|.+|||+-||.|  .+        ++.+++.|..+|+|+|+                  ..+..+++|....... +
T Consensus       186 v~~GE~V~DmFAGVG--pf--------si~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~  255 (341)
T COG2520         186 VKEGETVLDMFAGVG--PF--------SIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELG  255 (341)
T ss_pred             hcCCCEEEEccCCcc--cc--------hhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccc
Confidence            456999999999999  77        88888888666999999                  4588999999999877 8


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+|-|++...       .....++..+.+++++||++-.....
T Consensus       256 ~aDrIim~~p-------~~a~~fl~~A~~~~k~~g~iHyy~~~  291 (341)
T COG2520         256 VADRIIMGLP-------KSAHEFLPLALELLKDGGIIHYYEFV  291 (341)
T ss_pred             cCCEEEeCCC-------CcchhhHHHHHHHhhcCcEEEEEecc
Confidence            8999988443       23345666777888999999776644

>PTZ00357 methyltransferase; Provisional

Probab=97.40  E-value=0.00052  Score=67.50  Aligned_cols=103  Identities=24%  Similarity=0.243  Sum_probs=73.7

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC--------------------------CceEEEEccccc
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY--------------------------LILEVIQNKIEN  102 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~--------------------------~~i~~~~~d~~~  102 (252)
                      ..|+-+|+|.|  .|     |+.++.++. .+. .++++|+.                          +.++++..|++.
T Consensus       702 vVImVVGAGRG--PL-----VdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~  774 (1072)
T PTZ00357        702 LHLVLLGCGRG--PL-----IDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRT  774 (1072)
T ss_pred             EEEEEEcCCcc--HH-----HHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccc
Confidence            36899999999  66     444444444 222 35778777                          137999999999


Q ss_pred             cCCC------------CceeEEEecccccccCChhhHHHHHHHHhccccC----Ce-------EEEeeccccccCCCCCh
Q psy9773         103 VELP------------EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKP----EG-------VMYPYKCILHSAPSYSP  159 (252)
Q Consensus       103 ~~~~------------~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~Lkp----gG-------~lv~~~~~~~~~~~~~~  159 (252)
                      +..+            +++|+||+...+.+-.++-.+ ..|..+.+.||+    +|       +.|+...+.|.+|+...
T Consensus       775 W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNELSP-ECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSp  853 (1072)
T PTZ00357        775 IATAAENGSLTLPADFGLCDLIVSELLGSLGDNELSP-ECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSA  853 (1072)
T ss_pred             cccccccccccccccccccceehHhhhcccccccCCH-HHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccH
Confidence            8533            379999998776666666544 456666777765    55       58999999999999887


Q ss_pred             hH
Q psy9773         160 EI  161 (252)
Q Consensus       160 ~~  161 (252)
                      .+
T Consensus       854 KL  855 (1072)
T PTZ00357        854 TF  855 (1072)
T ss_pred             HH
Confidence            64

>KOG2915|consensus

Probab=97.35  E-value=0.00093  Score=59.14  Aligned_cols=92  Identities=24%  Similarity=0.278  Sum_probs=67.8

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC------------------CceEEEEccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY------------------LILEVIQNKI  100 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~------------------~~i~~~~~d~  100 (252)
                      |.....+.+|.+||+-|+|+|  .+        |..+++ .++ .+++..|+                  .++++..-|+
T Consensus        97 I~~~L~i~PGsvV~EsGTGSG--Sl--------ShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV  166 (314)
T KOG2915|consen   97 ILSMLEIRPGSVVLESGTGSG--SL--------SHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV  166 (314)
T ss_pred             HHHHhcCCCCCEEEecCCCcc--hH--------HHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec
Confidence            333457899999999999999  66        666665 222 58999998                  7889999999


Q ss_pred             cccCCC---CceeEEEecccccccCChhhHHHHHHHHhccccCCe-EEEeeccc
Q psy9773         101 ENVELP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEG-VMYPYKCI  150 (252)
Q Consensus       101 ~~~~~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG-~lv~~~~~  150 (252)
                      -...+.   ..+|.|+...        +.+..++..+.+.|+.+| +|+.-++.
T Consensus       167 c~~GF~~ks~~aDaVFLDl--------PaPw~AiPha~~~lk~~g~r~csFSPC  212 (314)
T KOG2915|consen  167 CGSGFLIKSLKADAVFLDL--------PAPWEAIPHAAKILKDEGGRLCSFSPC  212 (314)
T ss_pred             ccCCccccccccceEEEcC--------CChhhhhhhhHHHhhhcCceEEeccHH
Confidence            877665   6799997744        345556677777888765 66655554

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.34  E-value=0.00019  Score=54.22  Aligned_cols=85  Identities=22%  Similarity=0.131  Sum_probs=40.0

Q ss_pred             EEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccC--CC-CceeEEE
Q psy9773          54 LDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVE--LP-EKVDIIV  113 (252)
Q Consensus        54 LDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~--~~-~~fDlIv  113 (252)
                      |++|+..|.+++      +++..+...+..+++++|.                 .++.+++++....-  .+ +++|+|+
T Consensus         1 lEiG~~~G~st~------~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~   74 (106)
T PF13578_consen    1 LEIGTYSGYSTL------WLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIF   74 (106)
T ss_dssp             --------------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred             Cccccccccccc------cccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence            689988886554      1122222222236889988                 46788888876552  22 6899998


Q ss_pred             ecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       114 ~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .... |   ........+..+.+.|+|||++++..
T Consensus        75 iDg~-H---~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   75 IDGD-H---SYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             EES-------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             ECCC-C---CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            8552 2   22456677888899999999999864

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.29  E-value=0.0014  Score=60.61  Aligned_cols=86  Identities=20%  Similarity=0.115  Sum_probs=51.2

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC--
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL--  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~--  105 (252)
                      ....++ +|||+-||+|  ++        ++.++.. +++|+|+++                 .++.|+.+++.++..  
T Consensus       193 l~~~~~-~vlDlycG~G--~f--------sl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~  260 (352)
T PF05958_consen  193 LDLSKG-DVLDLYCGVG--TF--------SLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKAL  260 (352)
T ss_dssp             CTT-TT-EEEEES-TTT--CC--------HHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHH
T ss_pred             hhcCCC-cEEEEeecCC--HH--------HHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHH
Confidence            334444 8999999999  88        8888876 478999999                 678999887654421  


Q ss_pred             --------------C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 --------------P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 --------------~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                                    . ..+|+|+.++--.++.     ..++..+.   ++.=++|+++..
T Consensus       261 ~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~-----~~~~~~~~---~~~~ivYvSCnP  312 (352)
T PF05958_consen  261 AKAREFNRLKGIDLKSFKFDAVILDPPRAGLD-----EKVIELIK---KLKRIVYVSCNP  312 (352)
T ss_dssp             CCS-GGTTGGGS-GGCTTESEEEE---TT-SC-----HHHHHHHH---HSSEEEEEES-H
T ss_pred             HhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch-----HHHHHHHh---cCCeEEEEECCH
Confidence                          1 2589999877544431     23333332   335677787754

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.28  E-value=0.0019  Score=57.64  Aligned_cols=93  Identities=14%  Similarity=0.074  Sum_probs=54.8

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEE-----EccccccCCC-C
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVI-----QNKIENVELP-E  107 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~-----~~d~~~~~~~-~  107 (252)
                      ....+.+|||+|||+|..++       .+...-. ....++++|.            ....-.     .........+ .
T Consensus        30 p~f~P~~vLD~GsGpGta~w-------Aa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  101 (274)
T PF09243_consen   30 PDFRPRSVLDFGSGPGTALW-------AAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP  101 (274)
T ss_pred             cCCCCceEEEecCChHHHHH-------HHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC
Confidence            45677899999999993222       1111111 3457888888            000000     0111110111 3


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ..|+|++++++.-+.. .....++..+.+.+.+  .|++..+
T Consensus       102 ~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEp  140 (274)
T PF09243_consen  102 PDDLVIASYVLNELPS-AARAELVRSLWNKTAP--VLVLVEP  140 (274)
T ss_pred             CCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcC
Confidence            4599999999888877 6677888888776666  5555543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.28  E-value=0.0014  Score=55.97  Aligned_cols=110  Identities=12%  Similarity=0.124  Sum_probs=65.4

Q ss_pred             HhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------
Q psy9773          27 MLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------   90 (252)
Q Consensus        27 ~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------   90 (252)
                      .++.+.....+...|-+    .+++.|+++|.-.|++.+      +++-.+... +..+|+|+|+               
T Consensus        14 i~q~P~Dm~~~qeli~~----~kPd~IIE~Gi~~GGSli------~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~   83 (206)
T PF04989_consen   14 IIQYPQDMVAYQELIWE----LKPDLIIETGIAHGGSLI------FWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM   83 (206)
T ss_dssp             ESS-HHHHHHHHHHHHH----H--SEEEEE--TTSHHHH------HHHHHHHHTT---EEEEEES-GTT--S-GGGG---
T ss_pred             hhcCHHHHHHHHHHHHH----hCCCeEEEEecCCCchHH------HHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc
Confidence            45556667777777754    556899999999998776      344444444 3368999999               


Q ss_pred             -CceEEEEccccccCC-------C--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          91 -LILEVIQNKIENVEL-------P--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        91 -~~i~~~~~d~~~~~~-------~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       ++|+++++|..+...       .  ....+|+... .|.-   ......|.....++++|+++++....
T Consensus        84 ~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs-~H~~---~hvl~eL~~y~plv~~G~Y~IVeDt~  149 (206)
T PF04989_consen   84 SPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDS-SHTH---EHVLAELEAYAPLVSPGSYLIVEDTI  149 (206)
T ss_dssp             -TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS--------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred             cCceEEEECCCCCHHHHHHHHHhhccCCceEEEECC-CccH---HHHHHHHHHhCccCCCCCEEEEEecc
Confidence             699999999976621       1  2344555532 2222   34566777789999999999987753

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.26  E-value=0.002  Score=59.71  Aligned_cols=107  Identities=16%  Similarity=0.068  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-------------------------------
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-------------------------------   82 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-------------------------------   82 (252)
                      ...+..+|...+.-.++..++|.=||+|  ++        .+.++..+.                               
T Consensus       176 ketLAaAil~lagw~~~~pl~DPmCGSG--Ti--------~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~  245 (381)
T COG0116         176 KETLAAAILLLAGWKPDEPLLDPMCGSG--TI--------LIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE  245 (381)
T ss_pred             hHHHHHHHHHHcCCCCCCccccCCCCcc--HH--------HHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence            5667778888788888899999999999  87        455444431                               


Q ss_pred             ---------CcEEEeeC------------------CceEEEEccccccCCC-CceeEEEecccc-cccCChhh----HHH
Q psy9773          83 ---------LDHYAPQY------------------LILEVIQNKIENVELP-EKVDIIVSEWMG-FYLLHESM----IDS  129 (252)
Q Consensus        83 ---------~~v~gvD~------------------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~-~~l~~~~~----~~~  129 (252)
                               ..++|+|+                  ..|.|.++|+..+..+ ..+|+|||++-. .-+.....    ...
T Consensus       246 ~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~  325 (381)
T COG0116         246 ERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYRE  325 (381)
T ss_pred             HHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHH
Confidence                     13779999                  6799999999999887 899999997642 22222222    223


Q ss_pred             HHHHHhccccCCeEEEeeccc
Q psy9773         130 VIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       130 ~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +...+.+.++.-+++++++..
T Consensus       326 fg~~lk~~~~~ws~~v~tt~e  346 (381)
T COG0116         326 FGRTLKRLLAGWSRYVFTTSE  346 (381)
T ss_pred             HHHHHHHHhcCCceEEEEccH
Confidence            444556777777788877653

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.23  E-value=0.0027  Score=57.96  Aligned_cols=94  Identities=12%  Similarity=0.093  Sum_probs=56.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHH--Hhhc-CCCcEEEeeC-----------------CceEE--EEcccccc
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSF--CTKV-HPLDHYAPQY-----------------LILEV--IQNKIENV  103 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~--~a~~-g~~~v~gvD~-----------------~~i~~--~~~d~~~~  103 (252)
                      .+.++.+|+|+|||+|+=+.        .++  +... ....++++|+                 +.+.+  +++|..+.
T Consensus        73 ~i~~~~~lIELGsG~~~Kt~--------~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        73 SIPSGSMLVELGSGNLRKVG--------ILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             hcCCCCEEEEECCCchHHHH--------HHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            34667799999999995322        111  1111 1245888888                 33444  67777543


Q ss_pred             ----CCC---CceeEEEecc-cccccCChhhHHHHHHHHhc-cccCCeEEEeec
Q psy9773         104 ----ELP---EKVDIIVSEW-MGFYLLHESMIDSVIFARDK-FLKPEGVMYPYK  148 (252)
Q Consensus       104 ----~~~---~~fDlIv~~~-~~~~l~~~~~~~~~l~~l~~-~LkpgG~lv~~~  148 (252)
                          +.+   ....+++... +... ........+|+.+++ .|+|||.|++..
T Consensus       145 l~~l~~~~~~~~~r~~~flGSsiGN-f~~~ea~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       145 LAWLKRPENRSRPTTILWLGSSIGN-FSRPEAAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             HhhcccccccCCccEEEEeCccccC-CCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence                211   3356665522 1122 233467789999999 999999998854

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.18  E-value=0.00033  Score=57.79  Aligned_cols=56  Identities=16%  Similarity=0.058  Sum_probs=38.3

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC---C-c
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP---E-K  108 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~---~-~  108 (252)
                      ..|+|+.||.|++++          .+++. ..+|+|+|+                  ++|.++++|+.++...   . .
T Consensus         1 ~~vlD~fcG~GGNtI----------qFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~   69 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTI----------QFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKI   69 (163)
T ss_dssp             SEEEETT-TTSHHHH----------HHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-----
T ss_pred             CEEEEeccCcCHHHH----------HHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcccccc
Confidence            369999999997765          55555 468999999                  6899999999887433   2 2


Q ss_pred             eeEEEeccc
Q psy9773         109 VDIIVSEWM  117 (252)
Q Consensus       109 fDlIv~~~~  117 (252)
                      +|+|++++-
T Consensus        70 ~D~vFlSPP   78 (163)
T PF09445_consen   70 FDVVFLSPP   78 (163)
T ss_dssp             -SEEEE---
T ss_pred             ccEEEECCC
Confidence            899998553

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.16  E-value=0.0012  Score=64.00  Aligned_cols=27  Identities=4%  Similarity=-0.186  Sum_probs=20.7

Q ss_pred             HHHhccccCCeEEEeeccccccCCCCC
Q psy9773         132 FARDKFLKPEGVMYPYKCILHSAPSYS  158 (252)
Q Consensus       132 ~~l~~~LkpgG~lv~~~~~~~~~~~~~  158 (252)
                      ..+.++|+|||++.+..+..+......
T Consensus       180 ~~~~~lL~~~G~~~~I~P~s~l~~~~~  206 (524)
T TIGR02987       180 EISLEIANKNGYVSIISPASWLGDKTG  206 (524)
T ss_pred             HHHHHhcCCCCEEEEEEChHHhcCccH
Confidence            456899999999999888766555444

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.08  E-value=0.0057  Score=56.60  Aligned_cols=101  Identities=21%  Similarity=0.174  Sum_probs=65.9

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~~~  106 (252)
                      ....+|.+|||++++.|+=+.        .+..+..+ ...|+++|.                 .++.++..|...++..
T Consensus       152 L~p~pge~VlD~cAAPGGKTt--------hla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~  223 (355)
T COG0144         152 LDPKPGERVLDLCAAPGGKTT--------HLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL  223 (355)
T ss_pred             cCCCCcCEEEEECCCCCCHHH--------HHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc
Confidence            467889999999999996333        12222221 134799999                 4567778887655322


Q ss_pred             ----CceeEEEecccc---cccCChh----------------hHHHHHHHHhccccCCeEEEeecccccc
Q psy9773         107 ----EKVDIIVSEWMG---FYLLHES----------------MIDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus       107 ----~~fDlIv~~~~~---~~l~~~~----------------~~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                          .+||.|++..-.   ..+...+                --..+|..+.++|||||+|+-+++++..
T Consensus       224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~  293 (355)
T COG0144         224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP  293 (355)
T ss_pred             ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence                359999982211   1111001                1346788889999999999999987543

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.07  E-value=0.0015  Score=57.75  Aligned_cols=65  Identities=26%  Similarity=0.314  Sum_probs=50.3

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCC
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVEL  105 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~  105 (252)
                      |.......++..|||+|+|+|  .+        +..+...+ ++++++++               .++.++.+|+..+..
T Consensus        22 Iv~~~~~~~~~~VlEiGpG~G--~l--------T~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~   90 (262)
T PF00398_consen   22 IVDALDLSEGDTVLEIGPGPG--AL--------TRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDL   90 (262)
T ss_dssp             HHHHHTCGTTSEEEEESSTTS--CC--------HHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCG
T ss_pred             HHHhcCCCCCCEEEEeCCCCc--cc--------hhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhcccc
Confidence            333334568899999999999  77        77888876 78999999               689999999999876


Q ss_pred             CC----ceeEEEecc
Q psy9773         106 PE----KVDIIVSEW  116 (252)
Q Consensus       106 ~~----~fDlIv~~~  116 (252)
                      +.    ....|+++.
T Consensus        91 ~~~~~~~~~~vv~Nl  105 (262)
T PF00398_consen   91 YDLLKNQPLLVVGNL  105 (262)
T ss_dssp             GGHCSSSEEEEEEEE
T ss_pred             HHhhcCCceEEEEEe
Confidence            63    566777643

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG3987|consensus

Probab=96.91  E-value=0.00025  Score=60.50  Aligned_cols=99  Identities=18%  Similarity=0.115  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhCCCC--CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEcccc
Q psy9773          34 NEAYRAAICDNPNI--FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIE  101 (252)
Q Consensus        34 ~~~~~~~l~~~~~~--~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~  101 (252)
                      ...+++.+....+.  ..+.++||+|+|.|  -+        +..++.. ...|+|.+.          .+.+++  ...
T Consensus        95 e~QF~klL~i~~p~w~~~~~~lLDlGAGdG--ei--------t~~m~p~-feevyATElS~tMr~rL~kk~ynVl--~~~  161 (288)
T KOG3987|consen   95 EEQFRKLLVIGGPAWGQEPVTLLDLGAGDG--EI--------TLRMAPT-FEEVYATELSWTMRDRLKKKNYNVL--TEI  161 (288)
T ss_pred             HHHHHHHHhcCCCccCCCCeeEEeccCCCc--ch--------hhhhcch-HHHHHHHHhhHHHHHHHhhcCCcee--eeh
Confidence            34566666543222  23479999999999  44        4555443 245667666          233332  112


Q ss_pred             ccC-CCCceeEEEecccccccCChhhHHHHHHHHhccccC-CeEEEeec
Q psy9773         102 NVE-LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKP-EGVMYPYK  148 (252)
Q Consensus       102 ~~~-~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~Lkp-gG~lv~~~  148 (252)
                      ++. ..-+||+|.|..+   +..-.++-.+|..++.+|+| .|++++.-
T Consensus       162 ew~~t~~k~dli~clNl---LDRc~~p~kLL~Di~~vl~psngrvivaL  207 (288)
T KOG3987|consen  162 EWLQTDVKLDLILCLNL---LDRCFDPFKLLEDIHLVLAPSNGRVIVAL  207 (288)
T ss_pred             hhhhcCceeehHHHHHH---HHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence            221 1136999988554   33334788999999999999 89888653

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.91  E-value=0.0076  Score=53.50  Aligned_cols=91  Identities=11%  Similarity=0.155  Sum_probs=54.3

Q ss_pred             CEEEEEcCCcCchhhhhccCccc-hHHHhh-cCCCcEEEeeC---------------Cc--eEEEEccccccC-------
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDH-HSFCTK-VHPLDHYAPQY---------------LI--LEVIQNKIENVE-------  104 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~-s~~~a~-~g~~~v~gvD~---------------~~--i~~~~~d~~~~~-------  104 (252)
                      ...||||||-=  +.      .+ ...+.. ....+|+-+|.               .+  ..++++|+++..       
T Consensus        70 rQFLDlGsGlP--T~------~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~  141 (267)
T PF04672_consen   70 RQFLDLGSGLP--TA------GNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPE  141 (267)
T ss_dssp             -EEEEET--S----S------S-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHH
T ss_pred             ceEEEcccCCC--CC------CCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHH
Confidence            67999999943  11      11 222333 33368999998               34  789999997652       


Q ss_pred             ------CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 ------LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ------~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                            +..++-++++ .++|++....++..++..++..|.||.+|++++.+
T Consensus       142 ~~~~lD~~rPVavll~-~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t  192 (267)
T PF04672_consen  142 VRGLLDFDRPVAVLLV-AVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT  192 (267)
T ss_dssp             HHCC--TTS--EEEEC-T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred             HHhcCCCCCCeeeeee-eeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence                  1134445444 66788888789999999999999999999999875

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG3201|consensus

Probab=96.90  E-value=0.0003  Score=57.76  Aligned_cols=105  Identities=18%  Similarity=0.202  Sum_probs=65.2

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC--------------------Cc
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY--------------------LI   92 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~--------------------~~   92 (252)
                      ..++.-.+++......|++||++|.|--+ +-        +++.+. .....|.-.|.                    .+
T Consensus        14 eeala~~~l~~~n~~rg~~ilelgggft~-la--------glmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~ts   84 (201)
T KOG3201|consen   14 EEALAWTILRDPNKIRGRRILELGGGFTG-LA--------GLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTS   84 (201)
T ss_pred             HHHHHHHHHhchhHHhHHHHHHhcCchhh-hh--------hhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccce
Confidence            44555566666667788999999998431 21        233333 33456777777                    11


Q ss_pred             eEEEEccccccCCC---CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          93 LEVIQNKIENVELP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        93 i~~~~~d~~~~~~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.++..+.......   .+||+|+|....++-   .....++..+.++|+|.|.-++..|.
T Consensus        85 c~vlrw~~~~aqsq~eq~tFDiIlaADClFfd---E~h~sLvdtIk~lL~p~g~Al~fsPR  142 (201)
T KOG3201|consen   85 CCVLRWLIWGAQSQQEQHTFDIILAADCLFFD---EHHESLVDTIKSLLRPSGRALLFSPR  142 (201)
T ss_pred             ehhhHHHHhhhHHHHhhCcccEEEeccchhHH---HHHHHHHHHHHHHhCcccceeEecCc
Confidence            21222222222211   589999996664444   45567788889999999998887765

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.88  E-value=0.012  Score=50.22  Aligned_cols=102  Identities=23%  Similarity=0.180  Sum_probs=69.4

Q ss_pred             HHHHHHHHhC---CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEE
Q psy9773          35 EAYRAAICDN---PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVI   96 (252)
Q Consensus        35 ~~~~~~l~~~---~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~   96 (252)
                      ..+..+++.-   .++.+|.+||=||+.+|  +-       .|....-.+...++|+++               .|+--+
T Consensus        59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasG--TT-------vSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PI  129 (231)
T COG1889          59 SKLAAAILKGLKNFPIKEGSKVLYLGAASG--TT-------VSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPI  129 (231)
T ss_pred             hHHHHHHHcCcccCCcCCCCEEEEeeccCC--Cc-------HhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceee
Confidence            3445555442   46789999999999999  33       033333344457999998               667777


Q ss_pred             EccccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          97 QNKIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        97 ~~d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+|+.....-    +.+|+|+..-+     ......-+..++...|++||.+++....
T Consensus       130 L~DA~~P~~Y~~~Ve~VDviy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKA  182 (231)
T COG1889         130 LEDARKPEKYRHLVEKVDVIYQDVA-----QPNQAEILADNAEFFLKKGGYVVIAIKA  182 (231)
T ss_pred             ecccCCcHHhhhhcccccEEEEecC-----CchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence            7887665322    67999988443     2234556677788999999988776654

>KOG2187|consensus

Probab=96.85  E-value=0.0068  Score=57.96  Aligned_cols=101  Identities=18%  Similarity=0.123  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEE
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVI   96 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~   96 (252)
                      ...+.+.+........+..+||+.||||  ++        ++.+++ ++++|+||++                 .+.+|+
T Consensus       368 aevLys~i~e~~~l~~~k~llDv~CGTG--~i--------glala~-~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi  436 (534)
T KOG2187|consen  368 AEVLYSTIGEWAGLPADKTLLDVCCGTG--TI--------GLALAR-GVKRVIGVEISPDAVEDAEKNAQINGISNATFI  436 (534)
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEEeecCC--ce--------ehhhhc-cccceeeeecChhhcchhhhcchhcCccceeee
Confidence            3445555666667888899999999999  77        555554 4688999998                 788999


Q ss_pred             EccccccCCC------Ccee-EEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          97 QNKIENVELP------EKVD-IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        97 ~~d~~~~~~~------~~fD-lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++.+.++-..      .+-+ ++|.++.-.     .--..++..+.+.-++-=++|++++.
T Consensus       437 ~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~-----Glh~~~ik~l~~~~~~~rlvyvSCn~  492 (534)
T KOG2187|consen  437 VGQAEDLFPSLLTPCCDSETLVAIIDPPRK-----GLHMKVIKALRAYKNPRRLVYVSCNP  492 (534)
T ss_pred             ecchhhccchhcccCCCCCceEEEECCCcc-----cccHHHHHHHHhccCccceEEEEcCH
Confidence            9966665322      2345 344433211     22335566665555577777777654

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.82  E-value=0.0037  Score=59.62  Aligned_cols=45  Identities=13%  Similarity=0.328  Sum_probs=38.7

Q ss_pred             CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |.+||+|+++.++....+.-++..+|-++-|+|+|||.+++....
T Consensus       425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~  469 (506)
T PF03141_consen  425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV  469 (506)
T ss_pred             CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence            489999999887766666678999999999999999999997643

; GO: 0008168 methyltransferase activity

>PRK10742 putative methyltransferase; Provisional

Probab=96.81  E-value=0.0037  Score=54.90  Aligned_cols=71  Identities=17%  Similarity=0.033  Sum_probs=52.6

Q ss_pred             HHHHHHHHHhCCCCCCCC--EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------------
Q psy9773          34 NEAYRAAICDNPNIFAGK--TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------------   90 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~--~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------------   90 (252)
                      ...+.+++    .+.+|.  +|||+-+|+|  ..        ++.++.+|+. |++++.                     
T Consensus        75 ~~~l~kAv----glk~g~~p~VLD~TAGlG--~D--------a~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~  139 (250)
T PRK10742         75 GEAVAKAV----GIKGDYLPDVVDATAGLG--RD--------AFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEI  139 (250)
T ss_pred             ccHHHHHh----CCCCCCCCEEEECCCCcc--HH--------HHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhcccc
Confidence            34455554    456666  9999999999  77        7888888876 999998                     


Q ss_pred             -----CceEEEEccccccCC--CCceeEEEeccccc
Q psy9773          91 -----LILEVIQNKIENVEL--PEKVDIIVSEWMGF  119 (252)
Q Consensus        91 -----~~i~~~~~d~~~~~~--~~~fDlIv~~~~~~  119 (252)
                           .+++++++|...+..  +.+||+|++.+|..
T Consensus       140 ~~~~~~ri~l~~~da~~~L~~~~~~fDVVYlDPMfp  175 (250)
T PRK10742        140 GGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFP  175 (250)
T ss_pred             chhhhceEEEEeCcHHHHHhhCCCCCcEEEECCCCC
Confidence                 136677777766632  25799999988743

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.73  E-value=0.0099  Score=50.86  Aligned_cols=82  Identities=27%  Similarity=0.172  Sum_probs=55.3

Q ss_pred             EEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------------CceEEEEccccccCCC-CceeEE
Q psy9773          53 VLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------------LILEVIQNKIENVELP-EKVDII  112 (252)
Q Consensus        53 VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------------~~i~~~~~d~~~~~~~-~~fDlI  112 (252)
                      |.|+||-.|  .+        +..+.+.|. .+++++|+                  .++.+..+|-...-.+ ...|+|
T Consensus         1 vaDIGtDHg--yL--------pi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~i   70 (205)
T PF04816_consen    1 VADIGTDHG--YL--------PIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTI   70 (205)
T ss_dssp             EEEET-STT--HH--------HHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EE
T ss_pred             Cceeccchh--HH--------HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEE
Confidence            689999999  77        778877765 57999999                  6799999996554333 348888


Q ss_pred             EecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +...|+..     -+..+|.+....++....|++.-.
T Consensus        71 vIAGMGG~-----lI~~ILe~~~~~~~~~~~lILqP~  102 (205)
T PF04816_consen   71 VIAGMGGE-----LIIEILEAGPEKLSSAKRLILQPN  102 (205)
T ss_dssp             EEEEE-HH-----HHHHHHHHTGGGGTT--EEEEEES
T ss_pred             EEecCCHH-----HHHHHHHhhHHHhccCCeEEEeCC
Confidence            88776544     477888888777777667776543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.73  E-value=0.0031  Score=57.84  Aligned_cols=43  Identities=14%  Similarity=-0.069  Sum_probs=28.0

Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ..|++++...-+-.......+...+..+..++.|||.|++...
T Consensus       184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr  226 (484)
T COG5459         184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER  226 (484)
T ss_pred             ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence            5577766522111112333566688899999999999998764

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.67  E-value=0.015  Score=46.41  Aligned_cols=61  Identities=25%  Similarity=0.254  Sum_probs=41.5

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-----cCCCcEEEeeC--------------------CceEEEEccc
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-----VHPLDHYAPQY--------------------LILEVIQNKI  100 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-----~g~~~v~gvD~--------------------~~i~~~~~d~  100 (252)
                      ...+..+|+|+|||.|  .+        +..++.     ....+|+++|.                    .++.+..+++
T Consensus        22 ~~~~~~~vvD~GsG~G--yL--------s~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   91 (141)
T PF13679_consen   22 ESKRCITVVDLGSGKG--YL--------SRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI   91 (141)
T ss_pred             ccCCCCEEEEeCCChh--HH--------HHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch
Confidence            3467789999999999  77        667666     43468999998                    2344555554


Q ss_pred             cccCCCCceeEEEecc
Q psy9773         101 ENVELPEKVDIIVSEW  116 (252)
Q Consensus       101 ~~~~~~~~fDlIv~~~  116 (252)
                      .........++++.-+
T Consensus        92 ~~~~~~~~~~~~vgLH  107 (141)
T PF13679_consen   92 ADESSSDPPDILVGLH  107 (141)
T ss_pred             hhhcccCCCeEEEEee
Confidence            4443345678887733

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.63  E-value=0.007  Score=55.56  Aligned_cols=104  Identities=17%  Similarity=0.156  Sum_probs=57.3

Q ss_pred             CCCCCCEEEEEcCCcCchhh--hhccCccch-HHHhhcC-----CCcEEEeeC---------------------Cce---
Q psy9773          46 NIFAGKTVLDVGTGTGKSIL--LQGHGVDHH-SFCTKVH-----PLDHYAPQY---------------------LIL---   93 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~l--l~~~~v~~s-~~~a~~g-----~~~v~gvD~---------------------~~i---   93 (252)
                      .....-+|+|+||.+|.+++  ++.+ ++.. ......+     .-.|+--|.                     .+-   
T Consensus        13 ~~~~~~~iaD~GcS~G~Nsl~~~~~i-i~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~   91 (334)
T PF03492_consen   13 NNPKPFRIADLGCSSGPNSLLAVSNI-IDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFV   91 (334)
T ss_dssp             TTTTEEEEEEES--SSHHHHHHHHHH-HHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEE
T ss_pred             CCCCceEEEecCCCCCccHHHHHHHH-HHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEE
Confidence            34455799999999998877  1111 0000 0000000     125666677                     122   


Q ss_pred             EEEEccccccCCC-CceeEEEecccccccCCh------------------------------------hhHHHHHHHHhc
Q psy9773          94 EVIQNKIENVELP-EKVDIIVSEWMGFYLLHE------------------------------------SMIDSVIFARDK  136 (252)
Q Consensus        94 ~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~------------------------------------~~~~~~l~~l~~  136 (252)
                      .-+.+.+..--+| ++.|++++.+.+|++...                                    .|+..+|+...+
T Consensus        92 ~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~  171 (334)
T PF03492_consen   92 SGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE  171 (334)
T ss_dssp             EEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            2234555544555 899999998888777532                                    156777888889


Q ss_pred             cccCCeEEEeeccc
Q psy9773         137 FLKPEGVMYPYKCI  150 (252)
Q Consensus       137 ~LkpgG~lv~~~~~  150 (252)
                      =|+|||+|++....
T Consensus       172 ELv~GG~mvl~~~g  185 (334)
T PF03492_consen  172 ELVPGGRMVLTFLG  185 (334)
T ss_dssp             HEEEEEEEEEEEEE
T ss_pred             eeccCcEEEEEEee
Confidence            99999999988764

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.60  E-value=0.0096  Score=54.96  Aligned_cols=104  Identities=13%  Similarity=0.012  Sum_probs=72.4

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------------CceEEEEccccc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------------LILEVIQNKIEN  102 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------------~~i~~~~~d~~~  102 (252)
                      +...+||-+|.|.|  .-        ...+.+.+ ..+++-+|.                        +|++++..|+.+
T Consensus       288 ~~a~~vLvlGGGDG--LA--------lRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~  357 (508)
T COG4262         288 RGARSVLVLGGGDG--LA--------LRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ  357 (508)
T ss_pred             cccceEEEEcCCch--HH--------HHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH
Confidence            34478999999999  54        44555554 467888877                        788999999988


Q ss_pred             cCCC--CceeEEEecccccccCChh--hHHHHHHHHhccccCCeEEEeeccccccCCCCChhH
Q psy9773         103 VELP--EKVDIIVSEWMGFYLLHES--MIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI  161 (252)
Q Consensus       103 ~~~~--~~fDlIv~~~~~~~l~~~~--~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~~~~  161 (252)
                      +-..  ..||+||.......-+...  --..+-.-+.+.|+++|+++++..+.|..+..+...
T Consensus       358 wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i  420 (508)
T COG4262         358 WLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRI  420 (508)
T ss_pred             HHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeee
Confidence            8544  6899999844211111111  223455667899999999999998878777765433

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.54  E-value=0.033  Score=52.08  Aligned_cols=48  Identities=19%  Similarity=0.229  Sum_probs=36.9

Q ss_pred             CCC-CceeEEEecccccccCChh-----------------------------------hHHHHHHHHhccccCCeEEEee
Q psy9773         104 ELP-EKVDIIVSEWMGFYLLHES-----------------------------------MIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       104 ~~~-~~fDlIv~~~~~~~l~~~~-----------------------------------~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      -+| ++.+++++++.+|++...+                                   |+..+|+...+-|.|||++++.
T Consensus       157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~  236 (386)
T PLN02668        157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV  236 (386)
T ss_pred             ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence            344 8899999988888876311                                   4667777888899999999998


Q ss_pred             cccc
Q psy9773         148 KCIL  151 (252)
Q Consensus       148 ~~~~  151 (252)
                      ....
T Consensus       237 ~~Gr  240 (386)
T PLN02668        237 CLGR  240 (386)
T ss_pred             EecC
Confidence            7643

>KOG2352|consensus

Probab=96.50  E-value=0.013  Score=55.85  Aligned_cols=93  Identities=14%  Similarity=0.197  Sum_probs=71.5

Q ss_pred             CCCCC-EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCC-Cc
Q psy9773          47 IFAGK-TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELP-EK  108 (252)
Q Consensus        47 ~~~~~-~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~-~~  108 (252)
                      ..+-. ++|-+|||.-  .+        +..+-..|...++.+|+                ..+.+...|+..+.++ .+
T Consensus        45 ~~p~~~~~l~lGCGNS--~l--------~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedES  114 (482)
T KOG2352|consen   45 LSPSDFKILQLGCGNS--EL--------SEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDES  114 (482)
T ss_pred             hchhhceeEeecCCCC--HH--------HHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcc
Confidence            34444 9999999999  66        66777778888999999                4577889999999888 89


Q ss_pred             eeEEEecccccccCChh-------hHHHHHHHHhccccCCeEEEeecc
Q psy9773         109 VDIIVSEWMGFYLLHES-------MIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~-------~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ||+|+.-..+..+....       .....+..+.++|+|||+++....
T Consensus       115 FdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  115 FDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             eeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            99999966655543222       234567788999999999876554

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=96.50  E-value=0.005  Score=55.55  Aligned_cols=61  Identities=18%  Similarity=0.080  Sum_probs=43.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC---------------CceEEEEccccccCC--C
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY---------------LILEVIQNKIENVEL--P  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~---------------~~i~~~~~d~~~~~~--~  106 (252)
                      ...++..+||++||.|+.+          ..+++..  ..+|+|+|.               .++.++++|+.++..  +
T Consensus        16 ~~~pg~~vlD~TlG~GGhS----------~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~   85 (296)
T PRK00050         16 AIKPDGIYVDGTFGGGGHS----------RAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA   85 (296)
T ss_pred             CCCCCCEEEEeCcCChHHH----------HHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence            4567889999999999554          4545542  257999999               268888888887632  1


Q ss_pred             C---ceeEEEecc
Q psy9773         107 E---KVDIIVSEW  116 (252)
Q Consensus       107 ~---~fDlIv~~~  116 (252)
                      .   ++|.|+++.
T Consensus        86 ~~~~~vDgIl~DL   98 (296)
T PRK00050         86 EGLGKVDGILLDL   98 (296)
T ss_pred             cCCCccCEEEECC
Confidence            2   789888844

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.49  E-value=0.011  Score=53.05  Aligned_cols=100  Identities=19%  Similarity=0.213  Sum_probs=66.4

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC--C
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL--P  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~--~  106 (252)
                      ...++.+|||+++|.|+=+.        .+.....+...+++.|+                 .++.++..|......  .
T Consensus        82 ~~~~~~~VLD~CAapGgKt~--------~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~  153 (283)
T PF01189_consen   82 DPQPGERVLDMCAAPGGKTT--------HLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP  153 (283)
T ss_dssp             TTTTTSEEEESSCTTSHHHH--------HHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH
T ss_pred             cccccccccccccCCCCcee--------eeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc
Confidence            46788999999999995433        12222122358999999                 677777778877732  2


Q ss_pred             -CceeEEEecccc---cccCChh----------------hHHHHHHHHhccc----cCCeEEEeecccccc
Q psy9773         107 -EKVDIIVSEWMG---FYLLHES----------------MIDSVIFARDKFL----KPEGVMYPYKCILHS  153 (252)
Q Consensus       107 -~~fDlIv~~~~~---~~l~~~~----------------~~~~~l~~l~~~L----kpgG~lv~~~~~~~~  153 (252)
                       ..||.|++..-.   ..+...+                --..+|..+.+++    +|||+++-+++++..
T Consensus       154 ~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~  224 (283)
T PF01189_consen  154 ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP  224 (283)
T ss_dssp             TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred             ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence             459999982211   1111111                1346788889999    999999999887443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG2798|consensus

Probab=96.41  E-value=0.015  Score=52.67  Aligned_cols=44  Identities=27%  Similarity=0.297  Sum_probs=34.5

Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                      +.||+|+..   +++....++...|..+.++|+|||+.+=..|-.|.
T Consensus       258 ~~~d~VvTc---fFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYH  301 (369)
T KOG2798|consen  258 GSYDVVVTC---FFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYH  301 (369)
T ss_pred             CccceEEEE---EEeechHHHHHHHHHHHHhccCCcEEEeccceeee
Confidence            579999874   44666678889999999999999998866664443

>KOG2920|consensus

Probab=96.40  E-value=0.0033  Score=55.93  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=27.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      .-...+++|||+|||+|  +.        .+.+...++..+...|.
T Consensus       112 ~~~~~~k~vLELgCg~~--Lp--------~i~~~~~~~~~~~fqD~  147 (282)
T KOG2920|consen  112 QMSFSGKRVLELGCGAA--LP--------GIFAFVKGAVSVHFQDF  147 (282)
T ss_pred             heEecCceeEecCCccc--cc--------chhhhhhccceeeeEec
Confidence            45678999999999999  66        66666666556666666

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.36  E-value=0.008  Score=50.94  Aligned_cols=96  Identities=26%  Similarity=0.282  Sum_probs=62.6

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC-----------------------CceEEEEcc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY-----------------------LILEVIQNK   99 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~-----------------------~~i~~~~~d   99 (252)
                      ..+++|.+|+|+-.|.|  .+        +..++. .|+ ..|+++-.                       .+...+-..
T Consensus        44 aGlkpg~tVid~~PGgG--y~--------TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~  113 (238)
T COG4798          44 AGLKPGATVIDLIPGGG--YF--------TRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKP  113 (238)
T ss_pred             eccCCCCEEEEEecCCc--cH--------hhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCc
Confidence            56789999999999999  33        444433 333 25666543                       334444444


Q ss_pred             ccccCCCCceeEEEeccccccc----CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         100 IENVELPEKVDIIVSEWMGFYL----LHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~~~~~~fDlIv~~~~~~~l----~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ...+..+...|+++.....+.+    .+......+...+.+.|||||++++....
T Consensus       114 ~~A~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~  168 (238)
T COG4798         114 LVALGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR  168 (238)
T ss_pred             ccccCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence            4555544667777763332222    24446788889999999999999987643

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.28  E-value=0.035  Score=49.63  Aligned_cols=91  Identities=12%  Similarity=0.089  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC-------------------CceEEEEccccccCCC-
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY-------------------LILEVIQNKIENVELP-  106 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~-------------------~~i~~~~~d~~~~~~~-  106 (252)
                      .+.+|+=||||.=  .+       .++.+++ .+. ..+.++|+                   .++.|+.+|....... 
T Consensus       120 ~p~rVaFIGSGPL--Pl-------T~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl  190 (276)
T PF03059_consen  120 PPSRVAFIGSGPL--PL-------TSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL  190 (276)
T ss_dssp             ---EEEEE---SS---H-------HHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-
T ss_pred             ccceEEEEcCCCc--ch-------HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc
Confidence            4469999999986  33       0233443 332 35889999                   6789999999887655 


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..||+|+......  .....-..+|..+.+.++||+++++-...
T Consensus       191 ~~~DvV~lAalVg--~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~  232 (276)
T PF03059_consen  191 KEYDVVFLAALVG--MDAEPKEEILEHLAKHMAPGARLVVRSAH  232 (276)
T ss_dssp             ---SEEEE-TT-S------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred             ccCCEEEEhhhcc--cccchHHHHHHHHHhhCCCCcEEEEecch
Confidence            7899998733211  12236789999999999999999987543

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG2793|consensus

Probab=95.98  E-value=0.023  Score=49.95  Aligned_cols=88  Identities=15%  Similarity=0.138  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------------CceEEEEccccccCCC
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------------~~i~~~~~d~~~~~~~  106 (252)
                      ...+||++|+|+|  ..        .+.++..+...|...|.                      ..+.+...+.......
T Consensus        86 ~~~~vlELGsGtg--lv--------G~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~  155 (248)
T KOG2793|consen   86 KYINVLELGSGTG--LV--------GILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV  155 (248)
T ss_pred             cceeEEEecCCcc--HH--------HHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH
Confidence            4567999999999  66        66666644456777777                      1333333333333211


Q ss_pred             ----Cc-eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 ----EK-VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ----~~-fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                          .. +|+|+++.+.+.   +..+..++.-+..+|..+|.+++...
T Consensus       156 ~~~~~~~~DlilasDvvy~---~~~~e~Lv~tla~ll~~~~~i~l~~~  200 (248)
T KOG2793|consen  156 SFRLPNPFDLILASDVVYE---EESFEGLVKTLAFLLAKDGTIFLAYP  200 (248)
T ss_pred             hhccCCcccEEEEeeeeec---CCcchhHHHHHHHHHhcCCeEEEEEe
Confidence                34 899999776443   35566667777778888885555543

>KOG1596|consensus

Probab=95.94  E-value=0.037  Score=48.52  Aligned_cols=98  Identities=19%  Similarity=0.186  Sum_probs=62.6

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC---------------CceEEEEccccccCCC--
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY---------------LILEVIQNKIENVELP--  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~---------------~~i~~~~~d~~~~~~~--  106 (252)
                      .++.+|.+||=||+++|.+.         |....-.|+ .-||+++.               .||--+.-|++....-  
T Consensus       152 ihikpGsKVLYLGAasGttV---------SHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRm  222 (317)
T KOG1596|consen  152 IHIKPGSKVLYLGAASGTTV---------SHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRM  222 (317)
T ss_pred             eeecCCceEEEeeccCCcee---------ehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheee
Confidence            57889999999999999322         222222333 35888888               4555566676654321  


Q ss_pred             --CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCC
Q psy9773         107 --EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPS  156 (252)
Q Consensus       107 --~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~  156 (252)
                        +-.|+|++...     ......-+..++.-.|++||-|+++.........
T Consensus       223 lVgmVDvIFaDva-----qpdq~RivaLNA~~FLk~gGhfvisikancidst  269 (317)
T KOG1596|consen  223 LVGMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFVISIKANCIDST  269 (317)
T ss_pred             eeeeEEEEeccCC-----CchhhhhhhhhhhhhhccCCeEEEEEeccccccc
Confidence              56899987442     2223344445567899999999998765333333

>KOG2730|consensus

Probab=95.77  E-value=0.0034  Score=54.06  Aligned_cols=83  Identities=17%  Similarity=0.155  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC----
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP----  106 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~----  106 (252)
                      ...+|+|..||-|+++.         .+ +..++ .|++||+                  ++|+|+++|+.++-..    
T Consensus        94 ~~~~iidaf~g~gGnti---------qf-a~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~  162 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTI---------QF-ALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD  162 (263)
T ss_pred             CcchhhhhhhcCCchHH---------HH-HHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh
Confidence            55789999999998776         22 33333 4777777                  6999999999877332    


Q ss_pred             -CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEE
Q psy9773         107 -EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMY  145 (252)
Q Consensus       107 -~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv  145 (252)
                       ..+|+++.++-..   ...-...-+..+...+.|.|.-+
T Consensus       163 K~~~~~vf~sppwg---gp~y~~~~~~DL~~~~~p~~~~~  199 (263)
T KOG2730|consen  163 KIKYDCVFLSPPWG---GPSYLRADVYDLETHLKPMGTKI  199 (263)
T ss_pred             hheeeeeecCCCCC---CcchhhhhhhhhhhhcchhHHHH
Confidence             3466776644321   22334455556666666664433

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.57  E-value=0.0042  Score=50.78  Aligned_cols=58  Identities=19%  Similarity=0.163  Sum_probs=44.1

Q ss_pred             eEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773          93 LEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus        93 i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                      +.+++-......+. ++.|+|.+..++.|+... ....+++.+++.|||||+|-++.+..
T Consensus        31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriAvPdl   89 (185)
T COG4627          31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIAVPDL   89 (185)
T ss_pred             cchhhhhhhhccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence            44444333444454 899999998888777554 57789999999999999999998753

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.47  E-value=0.06  Score=47.33  Aligned_cols=66  Identities=17%  Similarity=0.009  Sum_probs=42.4

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC----------------CceEEEEccccccCCCCc
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY----------------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~  108 (252)
                      .+.+..+|+|||||.-  .+        ++...... ...++|+|+                .+..+...|+...+.+..
T Consensus       102 ~~~~p~sVlDigCGlN--Pl--------alp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~  171 (251)
T PF07091_consen  102 RIPPPDSVLDIGCGLN--PL--------ALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEP  171 (251)
T ss_dssp             CS---SEEEEET-TTC--HH--------HHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSE
T ss_pred             cCCCCchhhhhhccCC--ce--------ehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCC
Confidence            4566899999999998  66        55544432 258999999                456677778887766688


Q ss_pred             eeEEEeccccccc
Q psy9773         109 VDIIVSEWMGFYL  121 (252)
Q Consensus       109 fDlIv~~~~~~~l  121 (252)
                      .|+.+..=+++.+
T Consensus       172 ~DlaLllK~lp~l  184 (251)
T PF07091_consen  172 ADLALLLKTLPCL  184 (251)
T ss_dssp             ESEEEEET-HHHH
T ss_pred             cchhhHHHHHHHH
Confidence            9999875444444

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.43  E-value=0.0074  Score=46.41  Aligned_cols=42  Identities=12%  Similarity=0.183  Sum_probs=30.9

Q ss_pred             ceeEEEecccccccC---ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYLL---HESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~---~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .||+|+|..+.-+++   .+.-+..+|.++.++|+|||+|++.--
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ   45 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ   45 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            489999966654332   344688999999999999999998753

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG1099|consensus

Probab=95.40  E-value=0.03  Score=48.68  Aligned_cols=93  Identities=20%  Similarity=0.206  Sum_probs=62.0

Q ss_pred             CCCCC-CEEEEEcCCcCchhhhhccCccchHHHhhc--------CC--CcEEEeeC------CceEEEEccccccCC---
Q psy9773          46 NIFAG-KTVLDVGTGTGKSILLQGHGVDHHSFCTKV--------HP--LDHYAPQY------LILEVIQNKIENVEL---  105 (252)
Q Consensus        46 ~~~~~-~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--------g~--~~v~gvD~------~~i~~~~~d~~~~~~---  105 (252)
                      ++..| .|+.||.+..|  .+        +..+.+.        +.  +.+++||+      ..+.-+++|++....   
T Consensus        37 ~i~~gv~rvVDLCAAPG--SW--------SQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~  106 (294)
T KOG1099|consen   37 QIFEGVKRVVDLCAAPG--SW--------SQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEA  106 (294)
T ss_pred             hHHhhhhHHhhhhcCCC--cH--------HHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHH
Confidence            34455 68999999999  66        6655442        11  23999999      667788999988743   


Q ss_pred             -----C-CceeEEEecccc--cccCChh------hHHHHHHHHhccccCCeEEEeec
Q psy9773         106 -----P-EKVDIIVSEWMG--FYLLHES------MIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       106 -----~-~~fDlIv~~~~~--~~l~~~~------~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                           . .+.|+|+|..+.  ..++...      -+...|.-...+|+|||.|+--.
T Consensus       107 Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi  163 (294)
T KOG1099|consen  107 IIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI  163 (294)
T ss_pred             HHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence                 2 489999995543  1121111      23445555678999999998543

>KOG3115|consensus

Probab=95.35  E-value=0.028  Score=47.98  Aligned_cols=21  Identities=14%  Similarity=0.396  Sum_probs=16.1

Q ss_pred             HHHHHHHhccccCCeEEEeec
Q psy9773         128 DSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       128 ~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ..++.+..=+|++||.++..+
T Consensus       163 ~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  163 STLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             hhHHHHHHhhhhcCceEEEEe
Confidence            356666778899999998765

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=95.26  E-value=0.26  Score=43.15  Aligned_cols=102  Identities=17%  Similarity=0.096  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC----------------CceEEE
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------------LILEVI   96 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------------~~i~~~   96 (252)
                      +...+..+........|++||-||=..-   .        |+.++. ..+++|+.+|+                -+|+.+
T Consensus        29 T~~~Ra~~~~~~gdL~gk~il~lGDDDL---t--------SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~   97 (243)
T PF01861_consen   29 TTLRRAALMAERGDLEGKRILFLGDDDL---T--------SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAV   97 (243)
T ss_dssp             HHHHHHHHHHHTT-STT-EEEEES-TT----H--------HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE
T ss_pred             HHHHHHHHHHhcCcccCCEEEEEcCCcH---H--------HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEE
Confidence            3334444444467788999999996664   2        333333 33578999999                458889


Q ss_pred             EccccccCCC---CceeEEEecccccccCChhhHHHHHHHHhccccCCe-EEEeeccc
Q psy9773          97 QNKIENVELP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEG-VMYPYKCI  150 (252)
Q Consensus        97 ~~d~~~~~~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG-~lv~~~~~  150 (252)
                      ..|++.--++   ++||++++.+. .   ...-+.-++.+....|+..| ..++....
T Consensus        98 ~~DlR~~LP~~~~~~fD~f~TDPP-y---T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~  151 (243)
T PF01861_consen   98 HYDLRDPLPEELRGKFDVFFTDPP-Y---TPEGLKLFLSRGIEALKGEGCAGYFGFTH  151 (243)
T ss_dssp             ---TTS---TTTSS-BSEEEE----S---SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred             EecccccCCHHHhcCCCEEEeCCC-C---CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence            9999876433   89999999774 2   22567788899889998644 66665443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=95.00  E-value=0.037  Score=43.54  Aligned_cols=29  Identities=21%  Similarity=0.194  Sum_probs=23.4

Q ss_pred             EEEEEcCCcCchhhhhccCccchHHHhhcCCC-cEEEeeC
Q psy9773          52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPL-DHYAPQY   90 (252)
Q Consensus        52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~-~v~gvD~   90 (252)
                      ++||+|||.|  .+        +..++..++. +++++|+
T Consensus         1 ~vlDiGa~~G--~~--------~~~~~~~~~~~~v~~~E~   30 (143)
T TIGR01444         1 VVIDVGANIG--DT--------SLYFARKGAEGRVIAFEP   30 (143)
T ss_pred             CEEEccCCcc--HH--------HHHHHHhCCCCEEEEEec
Confidence            4899999999  66        6677766553 7999999

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG2671|consensus

Probab=94.92  E-value=0.04  Score=50.54  Aligned_cols=99  Identities=17%  Similarity=0.130  Sum_probs=63.4

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------------------CceE
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------------------LILE   94 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------------------~~i~   94 (252)
                      +.+.+...+|+.|+|--.|||  .+        ...++..|+ -|+|.||                          .-+.
T Consensus       200 ~AN~Amv~pGdivyDPFVGTG--sl--------Lvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fld  268 (421)
T KOG2671|consen  200 MANQAMVKPGDIVYDPFVGTG--SL--------LVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLD  268 (421)
T ss_pred             HhhhhccCCCCEEecCccccC--ce--------eeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhh
Confidence            344467899999999999999  44        334566664 5888888                          2234


Q ss_pred             EEEccccccCCC--CceeEEEeccccc------------------------ccCChh------hHHHHHHHHhccccCCe
Q psy9773          95 VIQNKIENVELP--EKVDIIVSEWMGF------------------------YLLHES------MIDSVIFARDKFLKPEG  142 (252)
Q Consensus        95 ~~~~d~~~~~~~--~~fDlIv~~~~~~------------------------~l~~~~------~~~~~l~~l~~~LkpgG  142 (252)
                      ++.+|...-+..  ..||.|||.+-..                        |.+...      .+..+|.-..+.|..||
T Consensus       269 vl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~gg  348 (421)
T KOG2671|consen  269 VLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGG  348 (421)
T ss_pred             eeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCc
Confidence            455555554443  5799999954211                        111000      13345555678999999


Q ss_pred             EEEeeccc
Q psy9773         143 VMYPYKCI  150 (252)
Q Consensus       143 ~lv~~~~~  150 (252)
                      ++++.-+.
T Consensus       349 rlv~w~p~  356 (421)
T KOG2671|consen  349 RLVFWLPT  356 (421)
T ss_pred             eEEEecCc
Confidence            99988763

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=94.79  E-value=0.068  Score=44.02  Aligned_cols=91  Identities=15%  Similarity=0.077  Sum_probs=55.6

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCceEEEE---cccccc----------CCCCceeEEEecc
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQ---NKIENV----------ELPEKVDIIVSEW  116 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i~~~~---~d~~~~----------~~~~~fDlIv~~~  116 (252)
                      +++++-+|+..=          |.-..+...|+.+++.++....++..   -.+..+          ...++||++.|..
T Consensus         2 ~~~g~V~GS~~P----------wvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~   71 (177)
T PF03269_consen    2 GKSGLVVGSMQP----------WVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFS   71 (177)
T ss_pred             CceEEEEecCCc----------hhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheec
Confidence            466777776643          33666777888889999884332211   122222          1127899998854


Q ss_pred             cccccC--------ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         117 MGFYLL--------HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       117 ~~~~l~--------~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +..+.-        +..--...+.++.++|||||.|++..|.
T Consensus        72 siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv  113 (177)
T PF03269_consen   72 SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV  113 (177)
T ss_pred             hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence            432221        1112334567788999999999998873

>KOG1122|consensus

Probab=94.38  E-value=0.23  Score=46.68  Aligned_cols=98  Identities=12%  Similarity=0.142  Sum_probs=60.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccC---C
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVE---L  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~---~  105 (252)
                      ...+|-||||+.|..|+=+.      -++.++...  .-++|.|.                 .+..+...|...++   +
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt------~IAalMkn~--G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~  309 (460)
T KOG1122|consen  238 DPQPGERILDMCAAPGGKTT------HIAALMKNT--GVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF  309 (460)
T ss_pred             CCCCCCeecchhcCCCchHH------HHHHHHcCC--ceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc
Confidence            45678999999999997443      012223323  36888886                 44555666666554   2


Q ss_pred             CCceeEEEecccccc---cCC----------------hhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773         106 PEKVDIIVSEWMGFY---LLH----------------ESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~---l~~----------------~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                      +++||-|+..--...   +.-                ..--.++|..+..++++||+|+-+++++
T Consensus       310 ~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI  374 (460)
T KOG1122|consen  310 PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI  374 (460)
T ss_pred             CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence            358999987221111   110                0112356667779999999999888764

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=94.19  E-value=0.38  Score=37.44  Aligned_cols=85  Identities=22%  Similarity=0.189  Sum_probs=62.3

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------CceEEEEccccccCCC--CceeEEEecccccc
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------LILEVIQNKIENVELP--EKVDIIVSEWMGFY  120 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------~~i~~~~~d~~~~~~~--~~fDlIv~~~~~~~  120 (252)
                      ...+|.++|-|-= +        +.+..++++|+ .++++|+      ..+++...|+++....  ...|+|.+      
T Consensus        13 ~~gkVvEVGiG~~-~--------~VA~~L~e~g~-dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYS------   76 (129)
T COG1255          13 ARGKVVEVGIGFF-L--------DVAKRLAERGF-DVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYS------   76 (129)
T ss_pred             cCCcEEEEccchH-H--------HHHHHHHHcCC-cEEEEecccccCcccceEEEccCCCccHHHhhCccceee------
Confidence            3348999998874 2        33677888884 6999999      4577999999888766  78999977      


Q ss_pred             cCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         121 LLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       121 l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +...+.+...+-.+.+.++-.-++.+-..
T Consensus        77 iRpppEl~~~ildva~aVga~l~I~pL~G  105 (129)
T COG1255          77 IRPPPELQSAILDVAKAVGAPLYIKPLTG  105 (129)
T ss_pred             cCCCHHHHHHHHHHHHhhCCCEEEEecCC
Confidence            55556777777777777766666655443

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=94.13  E-value=0.34  Score=42.95  Aligned_cols=111  Identities=14%  Similarity=0.045  Sum_probs=55.8

Q ss_pred             cHHHHHHHHHHHHh-CCCCCCCCEEEEEcCCcCc--hhhhhccCccchHHHhhcCCC--cEEEeeC-----CceEEEEcc
Q psy9773          30 DTVRNEAYRAAICD-NPNIFAGKTVLDVGTGTGK--SILLQGHGVDHHSFCTKVHPL--DHYAPQY-----LILEVIQNK   99 (252)
Q Consensus        30 ~~~~~~~~~~~l~~-~~~~~~~~~VLDlGcGtG~--~~ll~~~~v~~s~~~a~~g~~--~v~gvD~-----~~i~~~~~d   99 (252)
                      +...+..+...|.. ..-.+.+.|||.+|+|+-.  ..-        +..+.+.-+.  -++..|+     +.-..+.+|
T Consensus        41 NV~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPG--------t~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~D  112 (299)
T PF06460_consen   41 NVAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPG--------TAVLRQWLPEDAILVDNDIRDYVSDADQSIVGD  112 (299)
T ss_dssp             HHHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HH--------HHHHHHHS-TT-EEEEEESS--B-SSSEEEES-
T ss_pred             eHHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCc--------hHHHHHhCCCCcEEEecchhhhccccCCceecc
Confidence            33455666666643 1335667899999998631  111        2233332222  3555566     333467899


Q ss_pred             ccccCCCCceeEEEeccccc--------ccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         100 IENVELPEKVDIIVSEWMGF--------YLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       100 ~~~~~~~~~fDlIv~~~~~~--------~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ...+..+.+||+||+.+...        ....+.-...+..-++..|+=||.+.+-.
T Consensus       113 c~t~~~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKi  169 (299)
T PF06460_consen  113 CRTYMPPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKI  169 (299)
T ss_dssp             GGGEEESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCCCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEe
Confidence            99998889999999966421        11112223444555677888899998754

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=93.99  E-value=0.71  Score=39.27  Aligned_cols=116  Identities=9%  Similarity=0.064  Sum_probs=75.4

Q ss_pred             HhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------Cce
Q psy9773          27 MLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------LIL   93 (252)
Q Consensus        27 ~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------~~i   93 (252)
                      .++.+.....|...|-.    ..+..|++.|.-.|++.+      +.+-.+...|. .+|+++|+            ++|
T Consensus        51 ~~k~p~D~~~yQellw~----~~P~lvIE~Gs~~GGSal------~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i  120 (237)
T COG3510          51 CIKSPSDMWNYQELLWE----LQPSLVIEFGSRHGGSAL------FFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDI  120 (237)
T ss_pred             ccCCHHHHHHHHHHHHh----cCCceeEeeccccCchhh------hhhHhHHhcCCCceEEEEecccCcCChhhhcCCCe
Confidence            34555666777777753    456789999999997766      33334445552 46999998            678


Q ss_pred             EEEEccccccCCC-------CceeEEEe-cccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCC
Q psy9773          94 EVIQNKIENVELP-------EKVDIIVS-EWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP  155 (252)
Q Consensus        94 ~~~~~d~~~~~~~-------~~fDlIv~-~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~  155 (252)
                      .|+.++..+....       +.+--|+. ....|+   .....+.|+.+.++|..|-++++........+
T Consensus       121 ~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs---~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp  187 (237)
T COG3510         121 LFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHS---MEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP  187 (237)
T ss_pred             EEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCch---HHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence            9999998776431       22223333 222222   24556677778899999999998876544333

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=93.95  E-value=0.56  Score=41.35  Aligned_cols=110  Identities=10%  Similarity=0.006  Sum_probs=62.5

Q ss_pred             cHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC-----------------
Q psy9773          30 DTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY-----------------   90 (252)
Q Consensus        30 ~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~-----------------   90 (252)
                      ...|...+..++.......-+..|+++||-.|+..++      +...+...+  .+++++.|-                 
T Consensus        55 g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~------~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~  128 (248)
T PF05711_consen   55 GRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSIL------MRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKG  128 (248)
T ss_dssp             HHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHH------HHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCH
T ss_pred             CHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHH------HHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccch
Confidence            3445666666666554445667899999999964430      011111122  256888877                 


Q ss_pred             ----------------------------CceEEEEccccccCCC---CceeEEEecccccccCChhhHHHHHHHHhcccc
Q psy9773          91 ----------------------------LILEVIQNKIENVELP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLK  139 (252)
Q Consensus        91 ----------------------------~~i~~~~~d~~~~~~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~Lk  139 (252)
                                                  .++.++.|.+.+....   ..+-++....-     .-..-..+|..+...|.
T Consensus       129 ~~~~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D-----lYesT~~aLe~lyprl~  203 (248)
T PF05711_consen  129 WEFHEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCD-----LYESTKDALEFLYPRLS  203 (248)
T ss_dssp             CTCCGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE--------SHHHHHHHHHHHGGGEE
T ss_pred             hhhhhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEecc-----chHHHHHHHHHHHhhcC
Confidence                                        4677888887555322   44555444221     11356788899999999


Q ss_pred             CCeEEEeeccc
Q psy9773         140 PEGVMYPYKCI  150 (252)
Q Consensus       140 pgG~lv~~~~~  150 (252)
                      |||++++....
T Consensus       204 ~GGiIi~DDY~  214 (248)
T PF05711_consen  204 PGGIIIFDDYG  214 (248)
T ss_dssp             EEEEEEESSTT
T ss_pred             CCeEEEEeCCC
Confidence            99999999865

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=93.83  E-value=0.1  Score=45.49  Aligned_cols=63  Identities=14%  Similarity=0.144  Sum_probs=38.5

Q ss_pred             CCCCC--CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------------------CceEEEE
Q psy9773          46 NIFAG--KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------------------LILEVIQ   97 (252)
Q Consensus        46 ~~~~~--~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------------------~~i~~~~   97 (252)
                      .+.++  .+|||.=||-|+..+          .++..|+ +|++++-                          .+|+++.
T Consensus        70 Glk~~~~~~VLDaTaGLG~Da~----------vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~  138 (234)
T PF04445_consen   70 GLKPGMRPSVLDATAGLGRDAF----------VLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH  138 (234)
T ss_dssp             T-BTTB---EEETT-TTSHHHH----------HHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred             CCCCCCCCEEEECCCcchHHHH----------HHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence            34554  489999999996544          5556675 6999998                          4899999


Q ss_pred             ccccccCCC--CceeEEEeccccc
Q psy9773          98 NKIENVELP--EKVDIIVSEWMGF  119 (252)
Q Consensus        98 ~d~~~~~~~--~~fDlIv~~~~~~  119 (252)
                      +|..++-..  .+||+|+..+|+.
T Consensus       139 ~d~~~~L~~~~~s~DVVY~DPMFp  162 (234)
T PF04445_consen  139 GDALEYLRQPDNSFDVVYFDPMFP  162 (234)
T ss_dssp             S-CCCHCCCHSS--SEEEE--S--
T ss_pred             CCHHHHHhhcCCCCCEEEECCCCC
Confidence            999887433  7999999999854

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=93.42  E-value=0.24  Score=46.26  Aligned_cols=115  Identities=14%  Similarity=0.090  Sum_probs=71.1

Q ss_pred             hhhHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEe
Q psy9773          11 EEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAP   88 (252)
Q Consensus        11 ~~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gv   88 (252)
                      ...||+..+.+......+-  .  . +......  ....+.+|||.=||+|  ..        ++..+.-  +...|++-
T Consensus        18 ~~vFYNP~~~~nRDlsvl~--~--~-~~~~~~~--~~~~~~~~lDalaasG--vR--------~iRy~~E~~~~~~v~~N   80 (377)
T PF02005_consen   18 APVFYNPVMEFNRDLSVLA--I--R-YLAVLKE--KRKGPIRVLDALAASG--VR--------GIRYAKELAGVDKVTAN   80 (377)
T ss_dssp             SSSS--GGGHHHHHHHHHH--------HHHHHH--CH-S-EEEEETT-TTS--HH--------HHHHHHH-SSECEEEEE
T ss_pred             CCcccCcchhcccceeehh--H--H-HHHHhhh--hhcCCceEEecccccc--HH--------HHHHHHHcCCCCEEEEe
Confidence            4557777777654443331  0  0 1222221  1234568999999999  77        6666553  45789999


Q ss_pred             eC------------------C-ceEEEEccccccC--CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773          89 QY------------------L-ILEVIQNKIENVE--LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus        89 D~------------------~-~i~~~~~d~~~~~--~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      |+                  . ++.+.+.|+..+.  ....||+|=.++.       ..+..+|..+.+.++.||+|+++
T Consensus        81 Di~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDPf-------GSp~pfldsA~~~v~~gGll~vT  153 (377)
T PF02005_consen   81 DISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDPF-------GSPAPFLDSALQAVKDGGLLCVT  153 (377)
T ss_dssp             ES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--S-------S--HHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCCC-------CCccHhHHHHHHHhhcCCEEEEe
Confidence            99                  2 5788888998876  4588999966443       45677888888999999999998


Q ss_pred             cc
Q psy9773         148 KC  149 (252)
Q Consensus       148 ~~  149 (252)
                      ..
T Consensus       154 aT  155 (377)
T PF02005_consen  154 AT  155 (377)
T ss_dssp             E-
T ss_pred             cc
Confidence            75

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=93.39  E-value=1.2  Score=38.43  Aligned_cols=84  Identities=19%  Similarity=0.161  Sum_probs=56.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------CceEEEEccccccCCC-C
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------LILEVIQNKIENVELP-E  107 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~~-~  107 (252)
                      ..+.++.|+||-.|  .|        +.++.+.+ +..+++.|+                  +++++..+|-...--. .
T Consensus        15 ~~~~~iaDIGsDHA--YL--------p~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d   84 (226)
T COG2384          15 KQGARIADIGSDHA--YL--------PIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELED   84 (226)
T ss_pred             HcCCceeeccCchh--Hh--------HHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccC
Confidence            45566999999999  76        66766654 467889998                  6677777776333222 4


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEe
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYP  146 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~  146 (252)
                      .+|+|+...|+..     -+..+|.+....|+.=-+|+.
T Consensus        85 ~~d~ivIAGMGG~-----lI~~ILee~~~~l~~~~rlIL  118 (226)
T COG2384          85 EIDVIVIAGMGGT-----LIREILEEGKEKLKGVERLIL  118 (226)
T ss_pred             CcCEEEEeCCcHH-----HHHHHHHHhhhhhcCcceEEE
Confidence            7999988776543     366677777666654334443

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=93.31  E-value=0.25  Score=39.77  Aligned_cols=60  Identities=22%  Similarity=0.147  Sum_probs=38.5

Q ss_pred             CceEEEEccccccCCC---CceeEEEecccccccCChh--------hHHHHHHHHhccccCCeEEEeeccccc
Q psy9773          91 LILEVIQNKIENVELP---EKVDIIVSEWMGFYLLHES--------MIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus        91 ~~i~~~~~d~~~~~~~---~~fDlIv~~~~~~~l~~~~--------~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      .+++++...=..+..-   +++|+++.+.  .+++...        .-...+..+.++|+|||++.+....-|
T Consensus        26 ~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH   96 (140)
T PF06962_consen   26 DRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGH   96 (140)
T ss_dssp             SGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--ST
T ss_pred             CcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCC
Confidence            5789988777766432   4899998743  4454322        455677788899999999998876533

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG4058|consensus

Probab=93.24  E-value=0.32  Score=39.68  Aligned_cols=87  Identities=9%  Similarity=0.018  Sum_probs=54.5

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~  106 (252)
                      ....+..+.+|+|+|.|+  +        .+.+++.|..+.+|++.                  .+..|...|+....+.
T Consensus        68 l~~n~~GklvDlGSGDGR--i--------Vlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~  137 (199)
T KOG4058|consen   68 LRGNPKGKLVDLGSGDGR--I--------VLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR  137 (199)
T ss_pred             ccCCCCCcEEeccCCCce--e--------ehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence            344666789999999994  4        45777777777888888                  5677888888777654


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                       .|..++.+.+-.      .+..+-.++..-|..+..++...
T Consensus       138 -dy~~vviFgaes------~m~dLe~KL~~E~p~nt~vvacR  172 (199)
T KOG4058|consen  138 -DYRNVVIFGAES------VMPDLEDKLRTELPANTRVVACR  172 (199)
T ss_pred             -ccceEEEeehHH------HHhhhHHHHHhhCcCCCeEEEEe
Confidence             233333322222      23334455555566677766543

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=93.17  E-value=0.16  Score=39.03  Aligned_cols=31  Identities=16%  Similarity=0.231  Sum_probs=25.3

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      +.....|||||.|  +|        ...+.+-| .+-+|+|.
T Consensus        58 ~~~~FVDlGCGNG--LL--------V~IL~~EG-y~G~GiD~   88 (112)
T PF07757_consen   58 KFQGFVDLGCGNG--LL--------VYILNSEG-YPGWGIDA   88 (112)
T ss_pred             CCCceEEccCCch--HH--------HHHHHhCC-CCcccccc
Confidence            4568999999999  88        77777777 45888888

; GO: 0008168 methyltransferase activity

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=93.07  E-value=0.82  Score=39.55  Aligned_cols=57  Identities=9%  Similarity=0.088  Sum_probs=29.9

Q ss_pred             ceEEEEccccccC------CCCceeEEEecc-cccccCChh-----hHHHHHHHHhccccCCeEEEeec
Q psy9773          92 ILEVIQNKIENVE------LPEKVDIIVSEW-MGFYLLHES-----MIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        92 ~i~~~~~d~~~~~------~~~~fDlIv~~~-~~~~l~~~~-----~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ...+.+.|+.+..      .....|+|+... .+....|..     -...+|..+.++|-+++++.++.
T Consensus       146 p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v~~  214 (246)
T PF11599_consen  146 PHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAVSD  214 (246)
T ss_dssp             -EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred             chhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEEec
Confidence            4567788887742      224579999832 122222322     46789999999996666666643

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2198|consensus

Probab=93.07  E-value=0.58  Score=43.35  Aligned_cols=99  Identities=16%  Similarity=0.070  Sum_probs=56.8

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-C--cEEEeeC-----------------CceEEEEccccccC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-L--DHYAPQY-----------------LILEVIQNKIENVE  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~--~v~gvD~-----------------~~i~~~~~d~~~~~  104 (252)
                      ..+.+|.+|||+++..|+-++        .++.+-... .  .|++=|.                 .++.+...++...+
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~--------qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p  222 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTA--------QLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFP  222 (375)
T ss_pred             cccCCCCeeeeeccCCCccHH--------HHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecc
Confidence            467899999999999997554        233222211 1  4666666                 22333333333221


Q ss_pred             C---------C-CceeEEEeccc-c--cccCCh----------------hh-HHHHHHHHhccccCCeEEEeecccc
Q psy9773         105 L---------P-EKVDIIVSEWM-G--FYLLHE----------------SM-IDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus       105 ~---------~-~~fDlIv~~~~-~--~~l~~~----------------~~-~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                      .         . -.||-|+|.-- +  ..+...                +. -..+|.+..++|++||+++-++++.
T Consensus       223 ~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  223 NIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             ccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence            1         1 46999988211 0  000000                01 2357777789999999999998763

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=92.19  E-value=0.92  Score=41.08  Aligned_cols=58  Identities=19%  Similarity=0.146  Sum_probs=32.1

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-------------------CceEEEEccccccCCC---
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-------------------LILEVIQNKIENVELP---  106 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-------------------~~i~~~~~d~~~~~~~---  106 (252)
                      .-++||||||..++.         +++.++ .+ -+.+|+|+                   .+|.++...-...-+.   
T Consensus       103 ~v~glDIGTGAscIY---------pLLg~~~~~-W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~  172 (299)
T PF05971_consen  103 KVRGLDIGTGASCIY---------PLLGAKLYG-WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGII  172 (299)
T ss_dssp             --EEEEES-TTTTHH---------HHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTST
T ss_pred             ceEeecCCccHHHHH---------HHHhhhhcC-CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhh
Confidence            468999999998544         344444 44 57999999                   5688775533222111   


Q ss_pred             ---CceeEEEeccc
Q psy9773         107 ---EKVDIIVSEWM  117 (252)
Q Consensus       107 ---~~fDlIv~~~~  117 (252)
                         ..||+.+|++-
T Consensus       173 ~~~e~~dftmCNPP  186 (299)
T PF05971_consen  173 QPNERFDFTMCNPP  186 (299)
T ss_dssp             T--S-EEEEEE---
T ss_pred             cccceeeEEecCCc
Confidence               57999999885

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=92.19  E-value=0.12  Score=46.89  Aligned_cols=57  Identities=11%  Similarity=0.083  Sum_probs=38.7

Q ss_pred             ceEEEEccccccCCC--------CceeEEEecccccccC--ChhhHHHHHHHHhccccCCeEEEeec
Q psy9773          92 ILEVIQNKIENVELP--------EKVDIIVSEWMGFYLL--HESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        92 ~i~~~~~d~~~~~~~--------~~fDlIv~~~~~~~l~--~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ++.|.+.|+-....+        ...++|.....++-+.  +...-.++|.++...++||.+|++..
T Consensus       176 ~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD  242 (315)
T PF11312_consen  176 NVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD  242 (315)
T ss_pred             eeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence            467788888776543        1367776544333332  34466789999999999999998754

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=92.00  E-value=0.54  Score=41.84  Aligned_cols=55  Identities=16%  Similarity=0.167  Sum_probs=40.5

Q ss_pred             EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCC---CCceeEEEecc
Q psy9773          52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVEL---PEKVDIIVSEW  116 (252)
Q Consensus        52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~---~~~fDlIv~~~  116 (252)
                      +|+|+.||.|  .+        +..+...|...+.++|+           ..-.++.+|+..+..   .+.+|+|++.+
T Consensus         2 ~v~dLFsG~G--g~--------~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIG--GF--------RLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcc--hH--------HHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence            6999999999  55        45566667778899998           122367788888753   25799999844

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PHA01634 hypothetical protein

Probab=91.92  E-value=0.21  Score=39.76  Aligned_cols=34  Identities=12%  Similarity=-0.082  Sum_probs=29.1

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      ...+++|+|+|++-|  .-        +++++..||+.|++++.
T Consensus        26 dvk~KtV~dIGA~iG--dS--------aiYF~l~GAK~Vva~E~   59 (156)
T PHA01634         26 NVYQRTIQIVGADCG--SS--------ALYFLLRGASFVVQYEK   59 (156)
T ss_pred             eecCCEEEEecCCcc--ch--------hhHHhhcCccEEEEecc
Confidence            467899999999999  33        66777889999999999

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=91.50  E-value=0.79  Score=42.20  Aligned_cols=85  Identities=22%  Similarity=0.158  Sum_probs=55.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------CceEEEEccccccCCC---Cce
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------LILEVIQNKIENVELP---EKV  109 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~---~~f  109 (252)
                      ....+|.+|+=+|+| |--.+        +..+++ .| .+|+++|.           ..-.++... ......   +.|
T Consensus       162 ~~~~pG~~V~I~G~G-GlGh~--------avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~~~  230 (339)
T COG1064         162 ANVKPGKWVAVVGAG-GLGHM--------AVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKEIA  230 (339)
T ss_pred             cCCCCCCEEEEECCc-HHHHH--------HHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHhhC
Confidence            567889999999999 74344        555555 66 57999999           223344333 111111   449


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|+..-     .     ...+....+.|++||++++....
T Consensus       231 d~ii~tv-----~-----~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         231 DAIIDTV-----G-----PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             cEEEECC-----C-----hhhHHHHHHHHhcCCEEEEECCC
Confidence            9997722     1     23455556888999999987654

>KOG1562|consensus

Probab=91.21  E-value=0.45  Score=42.96  Aligned_cols=94  Identities=16%  Similarity=0.007  Sum_probs=59.4

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVE  104 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~  104 (252)
                      ....++||-||.|.|+...          ...++. ..++.-+|+                     +++.++-||-..+-
T Consensus       119 ~~npkkvlVVgggDggvlr----------evikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl  188 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLR----------EVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL  188 (337)
T ss_pred             CCCCCeEEEEecCCcccee----------eeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH
Confidence            3556899999999994333          222221 124444544                     77888888876662


Q ss_pred             --C-CCceeEEEecccccccCChh-hHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 --L-PEKVDIIVSEWMGFYLLHES-MIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 --~-~~~fDlIv~~~~~~~l~~~~-~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                        . .++||+|+....--..+... -...++..+.+.||+||+++...-+
T Consensus       189 ~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec  238 (337)
T KOG1562|consen  189 EDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC  238 (337)
T ss_pred             HHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence              2 28899999843211121111 2345667778999999999987644

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=90.77  E-value=0.82  Score=37.18  Aligned_cols=91  Identities=14%  Similarity=0.059  Sum_probs=46.1

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCC-----CCceeEEEe
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVEL-----PEKVDIIVS  114 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~-----~~~fDlIv~  114 (252)
                      ..-|||+|-|.|++.-        .+.- ....+.++.+|-          ..-.++.+|+.+.-.     ..+.-++.+
T Consensus        29 ~G~VlElGLGNGRTyd--------HLRe-~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHa   99 (160)
T PF12692_consen   29 PGPVLELGLGNGRTYD--------HLRE-IFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAHA   99 (160)
T ss_dssp             -S-EEEE--TTSHHHH--------HHHH-H--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE
T ss_pred             CCceEEeccCCCccHH--------HHHH-hCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEe
Confidence            3679999999996543        2222 233478999998          344688999876622     145667766


Q ss_pred             cccccccCChhhHHHHH-HHHhccccCCeEEEeecc
Q psy9773         115 EWMGFYLLHESMIDSVI-FARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       115 ~~~~~~l~~~~~~~~~l-~~l~~~LkpgG~lv~~~~  149 (252)
                      ..-.+.-.........+ .-+..+|.|||+++-..+
T Consensus       100 D~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~p  135 (160)
T PF12692_consen  100 DIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQP  135 (160)
T ss_dssp             ----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred             ecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence            44322211111122222 235789999999987654

>KOG3924|consensus

Probab=90.48  E-value=0.59  Score=43.70  Aligned_cols=92  Identities=11%  Similarity=0.052  Sum_probs=62.1

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------------------CceEEEEc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------------------LILEVIQN   98 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------------------~~i~~~~~   98 (252)
                      ..+.++....|+|+|.|+...         ..++..+++.-+|+++                          ..+.++++
T Consensus       188 l~~g~~D~F~DLGSGVGqlv~---------~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g  258 (419)
T KOG3924|consen  188 LKLGPADVFMDLGSGVGQLVC---------FVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG  258 (419)
T ss_pred             hccCCCCcccCCCcccchhhH---------HHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence            567888999999999994432         4455566677788887                          44667777


Q ss_pred             cccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          99 KIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        99 d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +..+...-    ...++|+++.+.+   .+ ++..=+..+..-+++|.+++-..+
T Consensus       259 sf~~~~~v~eI~~eatvi~vNN~~F---dp-~L~lr~~eil~~ck~gtrIiS~~~  309 (419)
T KOG3924|consen  259 SFLDPKRVTEIQTEATVIFVNNVAF---DP-ELKLRSKEILQKCKDGTRIISSKP  309 (419)
T ss_pred             ccCCHHHHHHHhhcceEEEEecccC---CH-HHHHhhHHHHhhCCCcceEecccc
Confidence            76655332    5789999877633   22 333333466677788988876654

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=90.21  E-value=1.5  Score=42.46  Aligned_cols=106  Identities=13%  Similarity=0.032  Sum_probs=56.9

Q ss_pred             HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC--------------CceE----EE
Q psy9773          36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY--------------LILE----VI   96 (252)
Q Consensus        36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~--------------~~i~----~~   96 (252)
                      .+.+.|.......+..+|+|..||||+..+  .    ....+.+.. ....+|.++              +.+.    ..
T Consensus       173 ~v~~liv~~l~~~~~~~i~DpacGsgg~l~--~----a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~  246 (489)
T COG0286         173 EVSELIVELLDPEPRNSIYDPACGSGGMLL--Q----AAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIR  246 (489)
T ss_pred             HHHHHHHHHcCCCCCCeecCCCCchhHHHH--H----HHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccc
Confidence            344444443333566799999999995443  0    011111111 145888886              3333    33


Q ss_pred             EccccccCC-----C-CceeEEEecccccccC---------------------C-hhhHHHHHHHHhccccCCeEEEee
Q psy9773          97 QNKIENVEL-----P-EKVDIIVSEWMGFYLL---------------------H-ESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus        97 ~~d~~~~~~-----~-~~fDlIv~~~~~~~l~---------------------~-~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      .+|...-+.     . +.||+|++++-.....                     . ......++..+...|+|||+.-+.
T Consensus       247 ~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv  325 (489)
T COG0286         247 HGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV  325 (489)
T ss_pred             ccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence            333322221     1 5699999955432000                     0 012267888889999998755443

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=90.16  E-value=0.59  Score=42.45  Aligned_cols=62  Identities=16%  Similarity=0.081  Sum_probs=42.9

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCC---
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVEL---  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~---  105 (252)
                      ....++..++|.=||.|+.+.        .++ ...+..+|+|+|.                .++.+++++..++..   
T Consensus        16 L~~~~ggiyVD~TlG~GGHS~--------~iL-~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~   86 (305)
T TIGR00006        16 LNIKPDGIYIDCTLGFGGHSK--------AIL-EQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD   86 (305)
T ss_pred             cCcCCCCEEEEeCCCChHHHH--------HHH-HhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence            345678899999999997765        332 2233367999998                378888888776521   


Q ss_pred             --C-CceeEEEec
Q psy9773         106 --P-EKVDIIVSE  115 (252)
Q Consensus       106 --~-~~fDlIv~~  115 (252)
                        . .++|.|+.+
T Consensus        87 ~~~~~~vDgIl~D   99 (305)
T TIGR00006        87 ELLVTKIDGILVD   99 (305)
T ss_pred             hcCCCcccEEEEe
Confidence              1 457777773

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK11524 putative methyltransferase; Provisional

Probab=90.06  E-value=0.35  Score=43.22  Aligned_cols=57  Identities=21%  Similarity=0.197  Sum_probs=38.9

Q ss_pred             ceEEEEcccccc--CCC-CceeEEEecccccccC-------------ChhhHHHHHHHHhccccCCeEEEeec
Q psy9773          92 ILEVIQNKIENV--ELP-EKVDIIVSEWMGFYLL-------------HESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        92 ~i~~~~~d~~~~--~~~-~~fDlIv~~~~~~~l~-------------~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ...++++|+.++  .++ ++||+|++++-.....             +..-+..++..+.++|+|||.|++..
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            346788888875  233 7899999975321100             00123578899999999999999854

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=89.27  E-value=2.1  Score=37.83  Aligned_cols=89  Identities=9%  Similarity=0.003  Sum_probs=60.7

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccC-------
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVE-------  104 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~-------  104 (252)
                      ..|+.||||--  +.        ...+.......++-+|.                   .+..++.+|+....       
T Consensus        83 ~qvV~LGaGlD--Tr--------~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~  152 (260)
T TIGR00027        83 RQVVILGAGLD--TR--------AYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAA  152 (260)
T ss_pred             cEEEEeCCccc--cH--------HHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhC
Confidence            57999999987  55        33332221135666666                   46778888886210       


Q ss_pred             -CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 -LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 -~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       +. ...-++++..++.++.. .....+|..+.+...||+.+++....
T Consensus       153 gfd~~~ptl~i~EGvl~YL~~-~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       153 GFDPTAPTAWLWEGLLMYLTE-EAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             CCCCCCCeeeeecchhhcCCH-HHHHHHHHHHHHhCCCCcEEEEEecc
Confidence             11 34668888887777644 46888999998888899999998654

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>KOG1098|consensus

Probab=89.10  E-value=0.8  Score=45.21  Aligned_cols=93  Identities=12%  Similarity=0.010  Sum_probs=55.0

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC------CceEEEEccccccCCC---------C
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY------LILEVIQNKIENVELP---------E  107 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~------~~i~~~~~d~~~~~~~---------~  107 (252)
                      ..+.++..||||||..|  .+        ...+.. .+. .-|+|+|+      +++..++.|++.....         -
T Consensus        40 ~fl~~a~~vlDLcaAPG--~W--------~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~  109 (780)
T KOG1098|consen   40 KFLEKAHVVLDLCAAPG--GW--------LQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTW  109 (780)
T ss_pred             ccccccchheeeccCCc--HH--------HHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhC
Confidence            44567889999999999  55        333333 333 35899999      4455556676544211         3


Q ss_pred             ceeEEEeccccccc-CChhh-------HHHHHHHHhccccCCeEEEee
Q psy9773         108 KVDIIVSEWMGFYL-LHESM-------IDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       108 ~fDlIv~~~~~~~l-~~~~~-------~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      +.|+|+...+.+.- .|..+       ....|.-+...|+.||.|+--
T Consensus       110 ~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtk  157 (780)
T KOG1098|consen  110 KADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTK  157 (780)
T ss_pred             CCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence            57999885432111 01111       123344456788999997643

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=88.72  E-value=1.8  Score=34.14  Aligned_cols=81  Identities=17%  Similarity=0.178  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------CceEEEEccccccCCC--CceeEEEecccccc
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------LILEVIQNKIENVELP--EKVDIIVSEWMGFY  120 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------~~i~~~~~d~~~~~~~--~~fDlIv~~~~~~~  120 (252)
                      ...+|.++|-|.- ...        +..+...| ..|+++|+      ..+.++.-|+.+..+.  ...|+|.+      
T Consensus        13 ~~~kiVEVGiG~~-~~v--------A~~L~~~G-~dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYS------   76 (127)
T PF03686_consen   13 NYGKIVEVGIGFN-PEV--------AKKLKERG-FDVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYS------   76 (127)
T ss_dssp             -SSEEEEET-TT---HH--------HHHHHHHS--EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEE------
T ss_pred             CCCcEEEECcCCC-HHH--------HHHHHHcC-CcEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEE------
Confidence            3459999999985 233        66677787 57999999      3678888888876554  78999988      


Q ss_pred             cCChhhHHHHHHHHhccccCCeEEE
Q psy9773         121 LLHESMIDSVIFARDKFLKPEGVMY  145 (252)
Q Consensus       121 l~~~~~~~~~l~~l~~~LkpgG~lv  145 (252)
                      +...+++...+.++.+.+.-+-++.
T Consensus        77 iRPP~El~~~il~lA~~v~adlii~  101 (127)
T PF03686_consen   77 IRPPPELQPPILELAKKVGADLIIR  101 (127)
T ss_dssp             ES--TTSHHHHHHHHHHHT-EEEEE
T ss_pred             eCCChHHhHHHHHHHHHhCCCEEEE
Confidence            3334456666666665554443333

; PDB: 2K4M_A.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=87.91  E-value=1.7  Score=42.28  Aligned_cols=91  Identities=16%  Similarity=0.144  Sum_probs=54.4

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccc-----------c--
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIEN-----------V--  103 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~-----------~--  103 (252)
                      ..++.+|+=+|||.=+..-        ...+...|+ .|+++|.          -..+++..+..+           .  
T Consensus       162 ~~pg~kVlViGaG~iGL~A--------i~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~  232 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAA--------IGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSE  232 (509)
T ss_pred             CcCCCEEEEECCcHHHHHH--------HHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcch
Confidence            4578999999999743322        233444776 6999999          223333222211           0  


Q ss_pred             C---------CC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         104 E---------LP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       104 ~---------~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .         ..  ..+|+||....   .+..+.+..+...+.+.+||||.++....
T Consensus       233 ~~~~~~~~~~~~~~~gaDVVIetag---~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        233 EFIKAEMALFAEQAKEVDIIITTAL---IPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             hHHHHHHHHHHhccCCCCEEEECCC---CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            0         01  35999988332   23323343445888899999999886543

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=86.98  E-value=6.6  Score=34.80  Aligned_cols=60  Identities=12%  Similarity=0.186  Sum_probs=41.2

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc------CCCcEEEeeC--------------C---ce
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV------HPLDHYAPQY--------------L---IL   93 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~------g~~~v~gvD~--------------~---~i   93 (252)
                      +...|.......++..++|+|||.|  .|        +.+++..      ....++.||-              .   .+
T Consensus         6 li~~l~~~~ll~~~~~~vEfGaGrg--~L--------S~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~   75 (259)
T PF05206_consen    6 LIGNLEQRGLLNPDSCFVEFGAGRG--EL--------SRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKF   75 (259)
T ss_pred             HHHHHHHcCCCCCCCEEEEECCCch--HH--------HHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCce
Confidence            3444544444567789999999999  66        6665553      2346788888              1   46


Q ss_pred             EEEEccccccCCC
Q psy9773          94 EVIQNKIENVELP  106 (252)
Q Consensus        94 ~~~~~d~~~~~~~  106 (252)
                      .-+..|+.++.+.
T Consensus        76 ~R~riDI~dl~l~   88 (259)
T PF05206_consen   76 ERLRIDIKDLDLS   88 (259)
T ss_pred             EEEEEEeeccchh
Confidence            7788899888654

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=86.95  E-value=1.7  Score=40.11  Aligned_cols=94  Identities=16%  Similarity=0.056  Sum_probs=53.1

Q ss_pred             CCCCCCCEEEEEcCCc-CchhhhhccCccchHHHhh-cCCCcEEEeeCC-----------ceEEEEccccc-c-------
Q psy9773          45 PNIFAGKTVLDVGTGT-GKSILLQGHGVDHHSFCTK-VHPLDHYAPQYL-----------ILEVIQNKIEN-V-------  103 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGt-G~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~~-----------~i~~~~~d~~~-~-------  103 (252)
                      ....++.+||.+|||+ |  .+        +..+++ .|..++++++..           ...++...-.+ +       
T Consensus       180 ~~~~~g~~VlV~g~G~vG--~~--------~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~  249 (386)
T cd08283         180 AEVKPGDTVAVWGCGPVG--LF--------AARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALREL  249 (386)
T ss_pred             ccCCCCCEEEEECCCHHH--HH--------HHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHH
Confidence            4567889999999876 5  33        333333 555468888761           22333211111 1       


Q ss_pred             CCCCceeEEEecccccc------------cCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         104 ELPEKVDIIVSEWMGFY------------LLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       104 ~~~~~fDlIv~~~~~~~------------l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .....+|+|+-......            +....+....+..+.+.|+|+|+++...
T Consensus       250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            11136899877321100            0111223456777889999999998764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=86.84  E-value=1.3  Score=39.30  Aligned_cols=53  Identities=21%  Similarity=0.244  Sum_probs=39.2

Q ss_pred             EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCCC--C-ceeEEEec
Q psy9773          52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVELP--E-KVDIIVSE  115 (252)
Q Consensus        52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~--~-~fDlIv~~  115 (252)
                      +++||.||.|  .+        +.-+...|...+.++|+           .. ....+|+..+...  . .+|+++..
T Consensus         2 ~~~dlFsG~G--g~--------~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~~~D~l~gg   68 (335)
T PF00145_consen    2 KVIDLFSGIG--GF--------SLGLEQAGFEVVWAVEIDPDACETYKANFP-EVICGDITEIDPSDLPKDVDLLIGG   68 (335)
T ss_dssp             EEEEET-TTT--HH--------HHHHHHTTEEEEEEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHHT-SEEEEE
T ss_pred             cEEEEccCcc--HH--------HHHHHhcCcEEEEEeecCHHHHHhhhhccc-ccccccccccccccccccceEEEec
Confidence            6999999999  55        55666667677999999           22 8889999988643  3 59999883

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PRK11524 putative methyltransferase; Provisional

Probab=86.44  E-value=1.3  Score=39.60  Aligned_cols=35  Identities=14%  Similarity=0.039  Sum_probs=27.8

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      ....+|..|||.-||+|  +-        +..+.+.| ++.+|+|+
T Consensus       204 ~~S~~GD~VLDPF~GSG--TT--------~~AA~~lg-R~~IG~Ei  238 (284)
T PRK11524        204 ASSNPGDIVLDPFAGSF--TT--------GAVAKASG-RKFIGIEI  238 (284)
T ss_pred             HhCCCCCEEEECCCCCc--HH--------HHHHHHcC-CCEEEEeC
Confidence            34689999999999999  54        44555565 68999999

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=86.25  E-value=0.9  Score=37.98  Aligned_cols=34  Identities=18%  Similarity=0.138  Sum_probs=23.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      ...+|..|||.-||+|  +-        +..+...| ++.+|+|+
T Consensus       188 ~t~~gdiVlDpF~GSG--TT--------~~aa~~l~-R~~ig~E~  221 (231)
T PF01555_consen  188 STNPGDIVLDPFAGSG--TT--------AVAAEELG-RRYIGIEI  221 (231)
T ss_dssp             HS-TT-EEEETT-TTT--HH--------HHHHHHTT--EEEEEES
T ss_pred             hhccceeeehhhhccC--hH--------HHHHHHcC-CeEEEEeC
Confidence            3577999999999999  65        45555565 67999987

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=84.87  E-value=2.6  Score=37.66  Aligned_cols=62  Identities=15%  Similarity=0.119  Sum_probs=49.6

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCC-CCceeEEE
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVEL-PEKVDIIV  113 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~-~~~fDlIv  113 (252)
                      ....+|....|+|+..|  -+        +..+.+++. .|++||.          ..++....|-..+.+ +...|-.+
T Consensus       207 ~rL~~~M~avDLGAcPG--GW--------TyqLVkr~m-~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmV  275 (358)
T COG2933         207 KRLAPGMWAVDLGACPG--GW--------TYQLVKRNM-RVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMV  275 (358)
T ss_pred             hhhcCCceeeecccCCC--cc--------chhhhhcce-EEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEE
Confidence            45678899999999999  55        667777764 6999998          678888888888865 47899999


Q ss_pred             eccc
Q psy9773         114 SEWM  117 (252)
Q Consensus       114 ~~~~  117 (252)
                      |.++
T Consensus       276 CDmV  279 (358)
T COG2933         276 CDMV  279 (358)
T ss_pred             eehh
Confidence            9765

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=84.53  E-value=2.4  Score=38.49  Aligned_cols=52  Identities=15%  Similarity=0.119  Sum_probs=37.6

Q ss_pred             EEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCC--CceeEEEec
Q psy9773          53 VLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELP--EKVDIIVSE  115 (252)
Q Consensus        53 VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~--~~fDlIv~~  115 (252)
                      |+||.||.|  -+        +.-+...|..-+.++|+            +. .++.+|+.++...  ..+|+++..
T Consensus         1 vidLF~G~G--G~--------~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg   66 (315)
T TIGR00675         1 FIDLFAGIG--GI--------RLGFEQAGFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGG   66 (315)
T ss_pred             CEEEecCcc--HH--------HHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEec
Confidence            689999999  55        55555667666778998            22 4567888887543  468999883

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=84.48  E-value=3.1  Score=34.31  Aligned_cols=43  Identities=16%  Similarity=0.246  Sum_probs=30.6

Q ss_pred             CceeEEEeccccccc-----------CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYL-----------LHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l-----------~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.||.||-+.- |.-           .+..-+..+|..+.++|+++|.+.++...
T Consensus        74 ~~FDrIiFNFP-H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~  127 (166)
T PF10354_consen   74 QRFDRIIFNFP-HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD  127 (166)
T ss_pred             CcCCEEEEeCC-CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            67999987442 211           11124667888899999999999998765

>PRK13699 putative methylase; Provisional

Probab=84.39  E-value=1.2  Score=38.60  Aligned_cols=55  Identities=16%  Similarity=0.255  Sum_probs=36.4

Q ss_pred             eEEEEcccccc--CCC-CceeEEEecccccc-cC---C--------hhhHHHHHHHHhccccCCeEEEee
Q psy9773          93 LEVIQNKIENV--ELP-EKVDIIVSEWMGFY-LL---H--------ESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus        93 i~~~~~d~~~~--~~~-~~fDlIv~~~~~~~-l~---~--------~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      ++++++|..+.  .++ +++|+|+.++--.. ..   .        ..-+..++.++.|+|||||.+++.
T Consensus         2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if   71 (227)
T PRK13699          2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF   71 (227)
T ss_pred             CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            35677888765  344 78999998653210 00   0        012457889999999999999864

>KOG1227|consensus

Probab=83.97  E-value=0.29  Score=44.24  Aligned_cols=82  Identities=18%  Similarity=0.167  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCce
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      -.+..|.|+-+|-|.+++        . ++...|++.|+|+|.                  .+..++.+|-+...+....
T Consensus       193 c~~eviVDLYAGIGYFTl--------p-flV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~A  263 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTL--------P-FLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRA  263 (351)
T ss_pred             cccchhhhhhcccceEEe--------e-hhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccc
Confidence            345789999999996655        2 556688999999999                  3344556666666655778


Q ss_pred             eEEEecccccccCCh-hhHHHHHHHHhccccC-CeEEEe
Q psy9773         110 DIIVSEWMGFYLLHE-SMIDSVIFARDKFLKP-EGVMYP  146 (252)
Q Consensus       110 DlIv~~~~~~~l~~~-~~~~~~l~~l~~~Lkp-gG~lv~  146 (252)
                      |-|..    ..++.. ..+.    .+.++|+| ||-++-
T Consensus       264 drVnL----GLlPSse~~W~----~A~k~Lk~eggsilH  294 (351)
T KOG1227|consen  264 DRVNL----GLLPSSEQGWP----TAIKALKPEGGSILH  294 (351)
T ss_pred             hheee----ccccccccchH----HHHHHhhhcCCcEEE
Confidence            88865    334322 2333    33467787 442443

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=83.91  E-value=2.2  Score=42.67  Aligned_cols=55  Identities=9%  Similarity=0.126  Sum_probs=34.7

Q ss_pred             eEEEEccccccCC--CCceeEEEecccccccCChhhH-HHHHHHHhccccCCeEEEeec
Q psy9773          93 LEVIQNKIENVEL--PEKVDIIVSEWMGFYLLHESMI-DSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        93 i~~~~~d~~~~~~--~~~fDlIv~~~~~~~l~~~~~~-~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ++++.+|+.+.-.  ...||+++....+-. .+...+ ..+|..+.++++|||+|.-.+
T Consensus       149 l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~-~np~~W~~~~~~~l~~~~~~~~~~~t~t  206 (662)
T PRK01747        149 LDLWFGDANELLPQLDARADAWFLDGFAPA-KNPDMWSPNLFNALARLARPGATLATFT  206 (662)
T ss_pred             EEEEecCHHHHHHhccccccEEEeCCCCCc-cChhhccHHHHHHHHHHhCCCCEEEEee
Confidence            3456677765422  256999988553211 111111 478999999999999998443

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=83.42  E-value=18  Score=29.80  Aligned_cols=100  Identities=17%  Similarity=0.120  Sum_probs=60.7

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------CceEEEEcccccc-CC
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------LILEVIQNKIENV-EL  105 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------~~i~~~~~d~~~~-~~  105 (252)
                      ..+.+.+..  ....+.+|+-|||=|-  ..        .+........+++..|+        .. .|+.-|.... ..
T Consensus        13 ~~l~~~l~~--~~~~~~~iaclstPsl--~~--------~l~~~~~~~~~~~Lle~D~RF~~~~~~-~F~fyD~~~p~~~   79 (162)
T PF10237_consen   13 EFLARELLD--GALDDTRIACLSTPSL--YE--------ALKKESKPRIQSFLLEYDRRFEQFGGD-EFVFYDYNEPEEL   79 (162)
T ss_pred             HHHHHHHHH--hcCCCCEEEEEeCcHH--HH--------HHHhhcCCCccEEEEeecchHHhcCCc-ceEECCCCChhhh
Confidence            444555543  2345689999999885  22        11111122356777777        12 3555555443 22


Q ss_pred             C----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 P----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +    ++||+||+.+-.   ....-+..+...++.++++++.+++.++.
T Consensus        80 ~~~l~~~~d~vv~DPPF---l~~ec~~k~a~ti~~L~k~~~kii~~Tg~  125 (162)
T PF10237_consen   80 PEELKGKFDVVVIDPPF---LSEECLTKTAETIRLLLKPGGKIILCTGE  125 (162)
T ss_pred             hhhcCCCceEEEECCCC---CCHHHHHHHHHHHHHHhCccceEEEecHH
Confidence            2    789999998752   34445556667777777899999887764

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>KOG1253|consensus

Probab=83.19  E-value=0.35  Score=46.36  Aligned_cols=86  Identities=13%  Similarity=0.006  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhh--cCCCcEEEeeC------------------CceEEEEccccccCCC-
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK--VHPLDHYAPQY------------------LILEVIQNKIENVELP-  106 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~--~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~-  106 (252)
                      ..+.+|||.=|+||  +.        ++..+.  -|..+|++-|.                  ..+.....|+..+... 
T Consensus       108 ~~~l~vLealsAtG--lr--------slRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~  177 (525)
T KOG1253|consen  108 EKSLRVLEALSATG--LR--------SLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH  177 (525)
T ss_pred             cCcchHHHHhhhhh--HH--------HHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc
Confidence            44578999999999  76        666555  23456777777                  2233445555554322 


Q ss_pred             ----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 ----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                          ..||+|-..+.       .....+|..+.+.++.||+|+++...
T Consensus       178 ~~~~~~FDvIDLDPy-------Gs~s~FLDsAvqav~~gGLL~vT~TD  218 (525)
T KOG1253|consen  178 PMVAKFFDVIDLDPY-------GSPSPFLDSAVQAVRDGGLLCVTCTD  218 (525)
T ss_pred             cccccccceEecCCC-------CCccHHHHHHHHHhhcCCEEEEEecc
Confidence                67999976553       34556888888999999999998754

>PRK13699 putative methylase; Provisional

Probab=82.30  E-value=3  Score=36.06  Aligned_cols=34  Identities=15%  Similarity=0.013  Sum_probs=26.0

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      ...+|..|||.-||+|  +.        ...+.+.| .+.+|+|+
T Consensus       160 ~s~~g~~vlDpf~Gsg--tt--------~~aa~~~~-r~~~g~e~  193 (227)
T PRK13699        160 FTHPNAIVLDPFAGSG--ST--------CVAALQSG-RRYIGIEL  193 (227)
T ss_pred             hCCCCCEEEeCCCCCC--HH--------HHHHHHcC-CCEEEEec
Confidence            3568899999999999  54        44455555 67899988

>KOG0024|consensus

Probab=81.59  E-value=7.6  Score=35.67  Aligned_cols=87  Identities=18%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             CCCCCCCEEEEEcCCc-CchhhhhccCccchHHHhh-cCCCcEEEeeC----------CceEEEEccccc--cC------
Q psy9773          45 PNIFAGKTVLDVGTGT-GKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------LILEVIQNKIEN--VE------  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGt-G~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------~~i~~~~~d~~~--~~------  104 (252)
                      .....|.+||=+|+|. |  ++        +.+.++ .|+.+|+.+|+          -..+.+..+...  ..      
T Consensus       165 ~~vk~Gs~vLV~GAGPIG--l~--------t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v  234 (354)
T KOG0024|consen  165 AGVKKGSKVLVLGAGPIG--LL--------TGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELV  234 (354)
T ss_pred             cCcccCCeEEEECCcHHH--HH--------HHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHH
Confidence            6788999999999995 5  44        555555 78889999999          111111111110  10      


Q ss_pred             ---CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 ---LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ---~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                         .. ..+|+.+-..         -....++.....+++||.+++....
T Consensus       235 ~~~~g~~~~d~~~dCs---------G~~~~~~aai~a~r~gGt~vlvg~g  275 (354)
T KOG0024|consen  235 EKALGKKQPDVTFDCS---------GAEVTIRAAIKATRSGGTVVLVGMG  275 (354)
T ss_pred             HhhccccCCCeEEEcc---------CchHHHHHHHHHhccCCEEEEeccC
Confidence               01 3478876522         1234455566788999998876643

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=80.83  E-value=3.5  Score=38.37  Aligned_cols=83  Identities=17%  Similarity=0.074  Sum_probs=59.5

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCCC--Cce
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVELP--EKV  109 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~--~~f  109 (252)
                      ..+|||.=||||  +.        ++..+. .+..+|+.=|+                 ..+..+..|+..+...  ..|
T Consensus        53 ~~~v~DalsatG--iR--------gIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~f  122 (380)
T COG1867          53 PKRVLDALSATG--IR--------GIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAF  122 (380)
T ss_pred             CeEEeecccccc--hh--------HhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCc
Confidence            789999999999  77        666555 44336888888                 2344555677666544  789


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |+|=..+.       ..+..++..+.+.++.||+|.++..
T Consensus       123 d~IDiDPF-------GSPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         123 DVIDIDPF-------GSPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             cEEecCCC-------CCCchHHHHHHHHhhcCCEEEEEec
Confidence            99955442       3455677777788899999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	252
3r0q_C	376	A Uniquely Open Conformation Revealed In The Crysta		8e-31
1g6q_1	328	Crystal Structure Of Yeast Arginine Methyltransfera		6e-27
1or8_A	340	Structure Of The Predominant Protein Arginine Methy		9e-26
1ori_A	343	Structure Of The Predominant Protein Arginine Methy		1e-25
1orh_A	353	Structure Of The Predominant Protein Arginine Methy		2e-25
4hc4_A	376	Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (		2e-25
3q7e_A	349	Crystal Structure Of Rat Protein Arginine Methyltra		3e-25
2fyt_A	340	Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev		4e-25
1f3l_A	321	Crystal Structure Of The Conserved Core Of Protein		7e-25
3b3j_A	480	The 2.55 A Crystal Structure Of The Apo Catalytic D		5e-18
2y1w_A	348	Crystal Structure Of Coactivator Associated Arginin		5e-18
3b3f_A	341	The 2.2 A Crystal Structure Of The Catalytic Domain		6e-18
4ikp_A	341	Crystal Structure Of Coactivator-associated Arginin		7e-18
2v74_B	346	Crystal Structure Of Coactivator-Associated Arginin		9e-18

>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 Length = 376

Iteration: 1
 Score =  130 bits (326), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 96/164 (58%), Gaps = 19/164 (11%)
Query: 5   VVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSI 64
           V K+ D  +YF +Y+ L   K ML D VR +AY  A+  N + F GKTVLDVGTG+G   
Sbjct: 19  VDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILA 78
Query: 65  LLQGHG-------------VDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDI 111
           +                   DH     K + LDH      I+EVI+  +E++ LPEKVD+
Sbjct: 79  IWSAQAGARKVYAVEATKMADHARALVKANNLDH------IVEVIEGSVEDISLPEKVDV 132
Query: 112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
           I+SEWMG++LL ESM DSVI ARD++LKP GVMYP    +  AP
Sbjct: 133 IISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAP 176

>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328

Iteration: 1
 Score =  117 bits (293), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 18/170 (10%)
Query: 14  YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG-KSILLQGHGVD 72
           YF+SY    +H+ ML DTVR  +YR AI  N ++F  K VLDVG GTG  S+    HG  
Sbjct: 3   YFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK 62
Query: 73  HH---------SFCTKVHPLDHYAPQYLILEVIQNKIENVELP-EKVDIIVSEWMGFYLL 122
           H              ++  L+ ++ +   + +++ K+E+V LP  KVDII+SEWMG++LL
Sbjct: 63  HVIGVDMSSIIEMAKELVELNGFSDK---ITLLRGKLEDVHLPFPKVDIIISEWMGYFLL 119
Query: 123 HESMIDSVIFARDKFLKPEGVMYPYKCILHSA----PSYSPEIFKFWENI 168
           +ESM+D+V++ARD +L   G+++P KC +H A      Y  E   +W+++
Sbjct: 120 YESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDV 169

>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340

Iteration: 1
 Score =  113 bits (283), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 14  YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
           YF+SY    +H+ ML D VR   YR ++  N ++F  K VLDVG+GTG   +        
Sbjct: 22  YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 81
Query: 74  HSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHES 125
                +   +  YA + +       ++ +I+ K+E VELP EKVDII+SEWMG+ L +ES
Sbjct: 82  KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 141
Query: 126 MIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENI 168
           M+++V+ ARDK+L P+G+++P +  L+        Y      +WEN+
Sbjct: 142 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENV 188

>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 14  YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
           YF+SY    +H+ ML D VR   YR ++  N ++F  K VLDVG+GTG   +        
Sbjct: 25  YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 84
Query: 74  HSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHES 125
                +   +  YA + +       ++ +I+ K+E VELP EKVDII+SEWMG+ L +ES
Sbjct: 85  KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 144
Query: 126 MIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENI 168
           M+++V+ ARDK+L P+G+++P +  L+        Y      +WEN+
Sbjct: 145 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENV 191

>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 14  YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
           YF+SY    +H+ ML D VR   YR ++  N ++F  K VLDVG+GTG   +        
Sbjct: 35  YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 94
Query: 74  HSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHES 125
                +   +  YA + +       ++ +I+ K+E VELP EKVDII+SEWMG+ L ++S
Sbjct: 95  KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYQS 154
Query: 126 MIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENI 168
           M+++V+ ARDK+L P+G+++P +  L+        Y      +WEN+
Sbjct: 155 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENV 201

>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 86/157 (54%), Gaps = 7/157 (4%)
Query: 6   VKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSIL 65
            K   ++ Y+E Y+D+ VH+ M+ D VR +AYR  I  N     GKTVLDVG GTG   +
Sbjct: 40  TKRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSI 99
Query: 66  LQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKI-------ENVELPEKVDIIVSEWMG 118
                     +  +   +   A + +    +++++       E VELPE+VD IVSEWMG
Sbjct: 100 FCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMG 159
Query: 119 FYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
           + LLHESM+ SV+ AR K+LK  G++ P    L   P
Sbjct: 160 YGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVP 196

>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 14  YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
           YF+SY    +H+ +L D VR   YR ++  N ++F  K VLDVG+GTG   +        
Sbjct: 31  YFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 90
Query: 74  HSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHES 125
                +   +  YA + +       ++ +I+ K+E VELP EKVDII+SEWMG+ L +ES
Sbjct: 91  KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 150
Query: 126 MIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENI 168
           M+++V+ ARDK+L P+G+++P +  L+        Y      +WEN+
Sbjct: 151 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENV 197

>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 94/167 (56%), Gaps = 12/167 (7%)
Query: 14  YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG-------KSILL 66
           YF SY    +H+ ML D +R E+YR  I  NP+IF  K VLDVG GTG       K+   
Sbjct: 29  YFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 88
Query: 67  QGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHES 125
           +  GVD      +   +         + +I+ KIE V LP EKVD+I+SEWMG++LL ES
Sbjct: 89  KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFES 148
Query: 126 MIDSVIFARDKFLKPEGVMYPYKCILH----SAPSYSPEIFKFWENI 168
           M+DSV++A++K+L   G +YP  C +     S  +   +   FW+++
Sbjct: 149 MLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDV 195

>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321

Iteration: 1
 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 93/172 (54%), Gaps = 22/172 (12%)
Query: 14  YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
           YF SY    +H+ ML D VR E+YR  I  NP+IF  K VLDVG GTG   +        
Sbjct: 10  YFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAK---- 65
Query: 74  HSFCTKVHPLDHYAPQYLILEVIQ------------NKIENVELP-EKVDIIVSEWMGFY 120
            +   KV  +D     Y  +++I+             KIE V LP EKVD+I+SEWMG++
Sbjct: 66  -AGAKKVIAVDQSEILYQAMDIIRLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYF 124
Query: 121 LLHESMIDSVIFARDKFLKPEGVMYPYKCILH----SAPSYSPEIFKFWENI 168
           LL ESM+DSV++A+ K+L   G +YP  C +     S  S   +   FW+++
Sbjct: 125 LLFESMLDSVLYAKSKYLAKGGSVYPDICTISLVAVSDVSKHADRIAFWDDV 176

>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 1   MDMEVVKDHDEE----EYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDV 56
           ++  V  +  EE    +YF+ Y  L   + M+ D VR   Y+ AI  N   F  K VLDV
Sbjct: 106 LERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDV 165
Query: 57  GTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLI--------LEVIQNKIENVELPEK 108
           G G+G              +  +   +  +A + L+        + VI  K+E V LPE+
Sbjct: 166 GCGSGILSFFAAQAGARKIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224
Query: 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
           VDII+SE MG+ L +E M++S + A+ K+LKP G M+P    +H AP
Sbjct: 225 VDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAP 270

>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Query: 4   EVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKS 63
           E  ++    +YF+ Y  L   + M+ D VR   Y+ AI  N   F  K VLDVG G+G  
Sbjct: 5   ERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGIL 64
Query: 64  ILLQGHGVDHHSFCTKVHPLDHYAPQYLI--------LEVIQNKIENVELPEKVDIIVSE 115
                       +  +   +  +A + L+        + VI  K+E V LPE+VDII+SE
Sbjct: 65  SFFAAQAGARKIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISE 123
Query: 116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
            MG+ L +E M++S + A+ K+LKP G M+P    +H AP
Sbjct: 124 PMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAP 162

>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Query: 4   EVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKS 63
           E  ++    +YF+ Y  L   + M+ D VR   Y+ AI  N   F  K VLDVG G+G  
Sbjct: 1   ERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGIL 60
Query: 64  ILLQGHGVDHHSFCTKVHPLDHYAPQYLI--------LEVIQNKIENVELPEKVDIIVSE 115
                       +  +   +  +A + L+        + VI  K+E V LPE+VDII+SE
Sbjct: 61  SFFAAQAGARKIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISE 119
Query: 116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
            MG+ L +E M++S + A+ K+LKP G M+P    +H AP
Sbjct: 120 PMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAP 158

>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341

Iteration: 1
 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 10/151 (6%)
Query: 13  EYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVD 72
           +YF+ Y  L   + M+ D VR   Y+ AI  N   F  K VLDVG G+G           
Sbjct: 9   QYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA 68
Query: 73  HHSFCTKVHPLDHYAPQYLI--------LEVIQNKIENVELPEKVDIIVSEWMGFYLLHE 124
              +  +   +  +A + L+        + VI  K+E V LPE+VDII+SE MG+ L +E
Sbjct: 69  RKIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNE 127
Query: 125 SMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
            M++S + A+ K+LKP G M+P    +H AP
Sbjct: 128 RMLESYLHAK-KYLKPSGNMFPTIGDVHLAP 157

>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346

Iteration: 1
 Score = 87.0 bits (214), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 10/151 (6%)
Query: 13  EYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVD 72
           +YF+ Y  L   + M+ D VR   Y+ AI  N   F  K VLDVG G+G           
Sbjct: 5   QYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA 64
Query: 73  HHSFCTKVHPLDHYAPQYLI--------LEVIQNKIENVELPEKVDIIVSEWMGFYLLHE 124
              +  +   +  +A + L+        + VI  K+E V LPE+VDII+SE MG+ L +E
Sbjct: 65  RKIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNE 123
Query: 125 SMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
            M++S + A+ K+LKP G M+P    +H AP
Sbjct: 124 RMLESYLHAK-KYLKPSGNMFPTIGDVHLAP 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	1e-40
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	6e-40
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	1e-39
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	6e-39
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	2e-38
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	1e-37
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	2e-20
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-11
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-09
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	9e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	8e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-04
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	3e-06
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-06
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	3e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	4e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	4e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	8e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-05
4ani_A	213	Protein GRPE; chaperone cycle, complementary assay	3e-05
4ani_A	213	Protein GRPE; chaperone cycle, complementary assay	3e-05
4ani_A	213	Protein GRPE; chaperone cycle, complementary assay	5e-05
4ani_A	213	Protein GRPE; chaperone cycle, complementary assay	9e-04
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	4e-05
3mwy_W	800	Chromo domain-containing protein 1; SWI2/SNF2 ATPa	1e-04
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	2e-04
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	3e-04
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	3e-04
2xzm_B	241	RPS0E; ribosome, translation; 3.93A {Tetrahymena t	3e-04
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	3e-04
2zjr_S	237	50S ribosomal protein L25; ribosome, large ribosom	3e-04
2zjr_S	237	50S ribosomal protein L25; ribosome, large ribosom	8e-04
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	4e-04
1dkg_A	197	Nucleotide exchange factor GRPE; HSP70, GRPE, nucl	7e-04
3f4k_A	257	Putative methyltransferase; structural genomics, P	8e-04

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340

 Score =  141 bits (357), Expect = 1e-40
 Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 14/195 (7%)

Query: 2   DMEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG 61
               +++ ++  YF SY    +H+ ML D +R E+YR  I  NP+IF  K VLDVG GTG
Sbjct: 17  RGSDLQEDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTG 76

Query: 62  K-SILLQGHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDII 112
             S+     G            + + A   +        + +I+ KIE V LP EKVD+I
Sbjct: 77  ILSMFAAKAGAK-KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVI 135

Query: 113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENI 168
           +SEWMG++LL ESM+DSV++A++K+L   G +YP  C +        +   +   FW+++
Sbjct: 136 ISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDV 195

Query: 169 AGEEEKKEEDEIEEE 183
            G +    +  +  E
Sbjct: 196 YGFKMSCMKKAVIPE 210

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376

 Score =  140 bits (354), Expect = 6e-40
 Identities = 73/185 (39%), Positives = 101/185 (54%), Gaps = 17/185 (9%)

Query: 4   EVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKS 63
            V K+ D  +YF +Y+ L   K ML D VR +AY  A+  N + F GKTVLDVGTG+G  
Sbjct: 18  PVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGIL 77

Query: 64  ILLQGHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELPEKVDIIVSEW 116
            +          +  +   +  +A   +       I+EVI+  +E++ LPEKVD+I+SEW
Sbjct: 78  AIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEW 137

Query: 117 MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK----------FWE 166
           MG++LL ESM DSVI ARD++LKP GVMYP    +  AP  S    +           W 
Sbjct: 138 MGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMADWH 197

Query: 167 NIAGE 171
           N + E
Sbjct: 198 NFSDE 202

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score =  139 bits (351), Expect = 1e-39
 Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 7   KDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILL 66
           ++    +YF+ Y  L   + M+ D VR   Y+ AI  N   F  K VLDVG G+G     
Sbjct: 8   EESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFF 67

Query: 67  QGHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELPEKVDIIVSEWMGF 119
                    +  +   +  +A   +        + VI  K+E V LPE+VDII+SE MG+
Sbjct: 68  AAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY 127

Query: 120 YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK 163
            L +E M++S + A+ K+LKP G M+P    +H AP    +++ 
Sbjct: 128 MLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYM 170

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480

 Score =  140 bits (353), Expect = 6e-39
 Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 6   VKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSIL 65
            ++    +YF+ Y  L   + M+ D VR   Y+ AI  N   F  K VLDVG G+G    
Sbjct: 115 TEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSF 174

Query: 66  LQGHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELPEKVDIIVSEWMG 118
                     +  +   +  +A   +        + VI  K+E V LPE+VDII+SE MG
Sbjct: 175 FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMG 234

Query: 119 FYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIF 162
           + L +E M++S + A+ K+LKP G M+P    +H AP    +++
Sbjct: 235 YMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLY 277

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328

 Score =  135 bits (342), Expect = 2e-38
 Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 14/172 (8%)

Query: 12  EEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQGHG 70
           + YF+SY    +H+ ML DTVR  +YR AI  N ++F  K VLDVG GTG  S+    HG
Sbjct: 1   DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60

Query: 71  VDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLL 122
              H     +  +   A + +        + +++ K+E+V LP  KVDII+SEWMG++LL
Sbjct: 61  AK-HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLL 119

Query: 123 HESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK----FWENIAG 170
           +ESM+D+V++ARD +L   G+++P KC +H A     +       +W+++ G
Sbjct: 120 YESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYG 171

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349

 Score =  134 bits (337), Expect = 1e-37
 Identities = 61/175 (34%), Positives = 99/175 (56%), Gaps = 14/175 (8%)

Query: 9   HDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQ 67
             ++ YF+SY    +H+ +L D VR   YR ++  N ++F  K VLDVG+GTG   +   
Sbjct: 26  TSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAA 85

Query: 68  GHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGF 119
             G        +   +  YA + +       ++ +I+ K+E VELP EKVDII+SEWMG+
Sbjct: 86  KAGAR-KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144

Query: 120 YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK----FWENIAG 170
            L +ESM+++V+ ARDK+L P+G+++P +  L+       +       +WEN+ G
Sbjct: 145 CLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYG 199

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745

 Score = 88.9 bits (219), Expect = 2e-20
 Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 33/175 (18%)

Query: 20  DLEVHKLMLDDTVRNEAYRAAICD-----NPNIFAGKTVLDVGTGTGKSILL-------- 66
           D  V+     D ++ + Y  A+         +      +  +G G G             
Sbjct: 375 DSGVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREY 434

Query: 67  -QGHGVDHHSFCTKVHPLDHYAPQYLIL------------EVIQNKIENVELP------E 107
                    S   K++ ++      + L             +I++ + ++         E
Sbjct: 435 NNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFE 494

Query: 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIF 162
           + DIIVSE +G +  +E +    +     FLKP  +  P K   +  P  S  I 
Sbjct: 495 QPDIIVSELLGSFGDNE-LSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIH 548

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 29/204 (14%)

Query: 1   MDMEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGT 60
           M ++    +D++ +FE Y+ +   K  L         +  + D    F  KTVLD+G G 
Sbjct: 1   MSLKE-NKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKMLPD----FNQKTVLDLGCGF 55

Query: 61  GK-SILLQGHGVDHHSFCTKVHPLD------HYAPQYL---ILEVIQNKIENVELP-EKV 109
           G   I    HG         V  +D        A +     ++   Q  IE++ +  +  
Sbjct: 56  GWHCIYAAEHGAKK------VLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAY 109

Query: 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIA 169
           ++++S      L + +  D +       LK  G            P ++ +  + W    
Sbjct: 110 NVVLSSLA---LHYIASFDDICKKVYINLKSSGSFI----FSVEHPVFTADGRQDWYTDE 162

Query: 170 GEEEKKEEDEIEEEENEEEEEVKQ 193
              +     +    E+        
Sbjct: 163 TGNKLHWPVDRYFNESMRTSHFLG 186

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 15/174 (8%)

Query: 3   MEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK 62
           M        +       D   +          E    A+    N+     + D+G GTG 
Sbjct: 1   MSNENKTIHDFELNLICDFFSNMERQGPGSP-EVTLKALSFIDNLTEKSLIADIGCGTGG 59

Query: 63  -SILLQGH------GVD-HHSFCTKVHPLDHYAPQYLILEVIQNKIENVELP-EKVDIIV 113
            +++L GH      G+D    F    +     +     +  I   ++++    E++D+I 
Sbjct: 60  QTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIW 119

Query: 114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWEN 167
           SE   + +  E  ++       K+LK  G +   +C   +      EI  FW +
Sbjct: 120 SEGAIYNIGFERGLNEW----RKYLKKGGYLAVSECSWFT-DERPAEINDFWMD 168

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEV--KQKKNKEEEEEEEEKKEEDEIEKEEG 217
            + K+   +   E       +    NE  + +   Q K K  E  + E +  +     + 
Sbjct: 887 LLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDL 946

Query: 218 ENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
            +   +  E+      E  E ++    +     +
Sbjct: 947 LSILAQLTELNYNGVPELTERKDTFFAQQWTGVK 980

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
            +  +  + E +  E +   ++      +  E       E    K+    ++    +   +
Sbjct: 926  KNLEAFDGECQSLEGQSNSDLLSIL-AQLTELNYNGVPELTERKDTFFAQQWTGVKSSAE 984

Query: 231  KKNEEEEEEEEVLIKLEEEEE 251
                    E E L K+E+   
Sbjct: 985  TYKNTLLAELERLQKIEDLHH 1005

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 1/88 (1%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           ++     EK E++  E    E + + K     ++     +K E     K       E  +
Sbjct: 857 DSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGD 916

Query: 226 EVV-KQKKNEEEEEEEEVLIKLEEEEEN 252
            +   Q K +  E  +     LE +  +
Sbjct: 917 SITAVQAKLKNLEAFDGECQSLEGQSNS 944

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 50.9 bits (121), Expect = 4e-08
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
           IA  +   +E E   +  EE+ +  Q+ +   +  E+E +E+ + + EE    + E+ E 
Sbjct: 74  IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE- 132

Query: 228 VKQKKNEEEEEEEEVLIKLEEEEEN 252
            K K N    ++       ++ + +
Sbjct: 133 -KNKINNRIADKAF----YQQPDAD 152

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 47.1 bits (111), Expect = 9e-07
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 14/85 (16%)

Query: 159 PEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
           PE  + W     EE++K   E++      E+E ++K  K+ EE  + + E+  +EK +  
Sbjct: 84  PESIRKWR----EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ--VEKNKIN 137

Query: 219 NEEEEEEEVVKQKKNEEEEEEEEVL 243
           N   ++           ++ + +++
Sbjct: 138 NRIADKAFY--------QQPDADII 154

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 2/95 (2%)

Query: 160  EIFKFWENIAGEEEKKEE--DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
             + ++ +   G E K  +   +I+E+  E +  +++  N E     E +K   ++E+   
Sbjct: 915  SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974

Query: 218  ENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
              EE +          EE  +  + L + + E++ 
Sbjct: 975  SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE-EEEEEVVK 229
              E ++     E     EEE K   N+    +EE  K   E+ + + E +  EE  +  K
Sbjct: 959  STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018

Query: 230  QKKNEEEEEEEEVLIKLEEEEE 251
             +  +   E +E    L+ E+E
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKE 1040

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE--EEEEEEVV 228
                  ++EI +   E  +   +KK  EE  ++ + + E  + + + +N   + E+EE+ 
Sbjct: 984  NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043

Query: 229  KQKKNEEEEEEEEVLIKLEEEEE 251
            ++  ++ +E  E +  KL EE +
Sbjct: 1044 RRIHDQAKEITETMEKKLVEETK 1066

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 16/88 (18%), Positives = 36/88 (40%)

Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
                    K+E  +++ E    E   K     E +  + ++K +++ ++ +   E+   
Sbjct: 894 QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953

Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
            E+    + E+   + E L   EEE +N
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEEAKN 981

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK----EEGENEEEEEEE 226
             + + E+  IEE  ++ + E +Q  ++ +E+    K E++E+ +    +  E  E  E++
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060

Query: 227  VVKQKKNEEEEEEEEVL 243
            +V++ K  E +  +E L
Sbjct: 1061 LVEETKQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE---EV 227
           + E +  +  ++     E ++ Q + K +E+ +E K   +++   E     E E+   +V
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969

Query: 228 VKQKKNEEEEEEEEVLIKLEEEE 250
            + + +EEE +     +   +EE
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEE 992

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 18/87 (20%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 171  EEEKKEEDEIEEEENEE---EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE---EEEE 224
            EE  K   E+ + + E+   EE   + K++ E+   E K++   ++ E+ E      ++ 
Sbjct: 991  EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050

Query: 225  EEVVKQKKNEEEEEEEEVLIKLEEEEE 251
            +E+ +  + +  EE +++ + L +E  
Sbjct: 1051 KEITETMEKKLVEETKQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 15/86 (17%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK-----EEGENEEEEEE 225
               ++E           +EE+ + + +  + + E+K  E+  +K     E+  +E +E+ 
Sbjct: 973  RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032

Query: 226  EVVKQKKNEEEEEEEEVLIKLEEEEE 251
             ++K +K E      +   ++ E  E
Sbjct: 1033 TLLKTEKEELNRRIHDQAKEITETME 1058

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE-EVVK 229
            +   ++ + +E   + E E+++    +    EEE K   + +   + E  +  +E    +
Sbjct: 945  KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004

Query: 230  QKKNEEEEEEEEVLIKLEEEEE 251
             +K   EE  ++   + E+   
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVS 1026

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEE----EEKKEEDEIEKEEGENEEEEEEE 226
            E +  E   +     E + ++ ++  +E+ +E     EK    EI       +   + E
Sbjct: 911 IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
            ++  + E +     VL   EE  +
Sbjct: 971 RLRMSEEEAKNATNRVLSLQEEIAK 995

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 28/82 (34%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
            ++ K E    E   +    ++ K  + + + +E+ KE   + ++    E     E  K 
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965

Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
           + + E     E   K       
Sbjct: 966 RSDVERLRMSEEEAKNATNRVL 987

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNK----EEEEEEEEKKEEDEIEKEEGE-----NEEE 222
              +    I   +      + +++ K    E    E  KK    +E +  +     +E+ 
Sbjct: 882 HYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN 941

Query: 223 EEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
           +E + + +K N  E        KL  + E
Sbjct: 942 KEYKSLLEKMNNLEITYSTETEKLRSDVE 970

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 8/82 (9%), Positives = 26/82 (31%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
              +  +  +  +        K++  K + E    ++ +      E +  + + +   + 
Sbjct: 882 HYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN 941

Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
           K+ +   E+   L      E  
Sbjct: 942 KEYKSLLEKMNNLEITYSTETE 963

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 14/81 (17%), Positives = 25/81 (30%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           E    E D+  E E+  E ++++ +      E       +    E  E     + E    
Sbjct: 42  EHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKAS 101

Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
           +   E    E      +E E 
Sbjct: 102 EVVAETPSAEAKPKSDKETEA 122

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 49.2 bits (116), Expect = 6e-07
 Identities = 13/85 (15%), Positives = 25/85 (29%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           E    E      + +  E      E  ++   E   E + +K E      E  +    E 
Sbjct: 23  ETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEA 82

Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEE 250
              +  +     + EE   ++  E 
Sbjct: 83  ATTETAEAASAAKPEEKASEVVAET 107

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 48.4 bits (114), Expect = 1e-06
 Identities = 15/81 (18%), Positives = 28/81 (34%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           E E   E+++E+ E              E    E  +     + EE  +E   E    + 
Sbjct: 53  EGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEA 112

Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
           K   ++E E +     + +E 
Sbjct: 113 KPKSDKETEAKPEATNQGDES 133

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 14/81 (17%), Positives = 22/81 (27%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
            E    E + + E     E   +K        E      +E    E        +   K 
Sbjct: 41  SEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKA 100

Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
            +   E    E   K ++E E
Sbjct: 101 SEVVAETPSAEAKPKSDKETE 121

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 13/86 (15%), Positives = 28/86 (32%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           EN   + E              E    +        + EEK  E   E    E + + ++
Sbjct: 59  ENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDK 118

Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
           E   + +   + +E +   +  + E+
Sbjct: 119 ETEAKPEATNQGDESKPAAEANKTEK 144

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 13/81 (16%), Positives = 24/81 (29%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
            E +   +   E+        +       E    E  E     K E +  E   E    +
Sbjct: 52  NEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAE 111

Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
            K + ++E E       + +E
Sbjct: 112 AKPKSDKETEAKPEATNQGDE 132

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 46.1 bits (108), Expect = 6e-06
 Identities = 17/82 (20%), Positives = 30/82 (36%)

Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
           GE  ++ + E  E      E      N+    E  E     + E++  E   E      K
Sbjct: 54  GEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAK 113

Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
            K ++E E + E   + +E + 
Sbjct: 114 PKSDKETEAKPEATNQGDESKP 135

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 46.1 bits (108), Expect = 6e-06
 Identities = 11/82 (13%), Positives = 25/82 (30%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
            E      E     + E    +  +     + EE+  E            + ++E   K 
Sbjct: 65  AEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKP 124

Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
           +   + +E +      + E+E 
Sbjct: 125 EATNQGDESKPAAEANKTEKEV 146

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 43.0 bits (100), Expect = 6e-05
 Identities = 13/82 (15%), Positives = 22/82 (26%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
              +       E    E  E       EE+  E   +      K + + E E + E   Q
Sbjct: 70  TASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQ 129

Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
               +   E     K  + +  
Sbjct: 130 GDESKPAAEANKTEKEVQPDVP 151

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 42.6 bits (99), Expect = 8e-05
 Identities = 12/84 (14%), Positives = 25/84 (29%)

Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
           A       E            E  +  +  + EE+  +   +    E     ++E E   
Sbjct: 65  AEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKP 124

Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
           +     +E +      K E+E + 
Sbjct: 125 EATNQGDESKPAAEANKTEKEVQP 148

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 14/82 (17%), Positives = 29/82 (35%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
             E    +  E     + EE   +   E    E + K + E E +     + +E +   +
Sbjct: 79  SNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138

Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
               E+E + +V    E+  + 
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLKP 160

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 14/73 (19%), Positives = 29/73 (39%)

Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
           A  E    E        + EE+  +   +    E + K +++   K E  N+ +E +   
Sbjct: 78  ASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137

Query: 229 KQKKNEEEEEEEE 241
           +  K E+E + + 
Sbjct: 138 EANKTEKEVQPDV 150

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 39.9 bits (92), Expect = 6e-04
 Identities = 15/82 (18%), Positives = 31/82 (37%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
              +    E  E  +  + E K  +   E    E K + D+  + + E   + +E     
Sbjct: 78  ASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137

Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
           + N+ E+E +  + K  E+   
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLK 159

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 19/82 (23%), Positives = 37/82 (45%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
             + +++ +E E    + + E      K ++ E++    ED+  K   E +  EE      
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 231  KKNEEEEEEEEVLIKLEEEEEN 252
                EEEE+ + L KL+ + E+
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHES 1039

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 20/89 (22%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
            EEE++   +++ E+ + ++++   + + EEEE   +K + E    +G+ ++ E++ ++ +
Sbjct: 937  EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996

Query: 231  KKNEE--------EEEEEEVLIKLEEEEE 251
             +N +        EE   ++   L EEEE
Sbjct: 997  DQNNKLTKERKLLEERVSDLTTNLAEEEE 1025

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 8/90 (8%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN--------EEE 222
            EEE+    +++ E+   + ++K+ ++     E++  K   E +  E           EEE
Sbjct: 965  EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024

Query: 223  EEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
            E+ + + + KN+ E    E+ ++L++EE++
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKS 1054

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
            EE   E +   EEE E  ++++ +K K +++  + +++ +E E    + + E+     K 
Sbjct: 926  EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985

Query: 231  KKNEEE-EEEEEVLIKLEEEEEN 252
            KK E++    E+   KL +E + 
Sbjct: 986  KKMEDDILIMEDQNNKLTKERKL 1008

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 18/82 (21%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
                ++ E+EE  +E E  +++++ + ++ + E+KK + ++   E + EEEE     +Q
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA---RQ 972

Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
           K   E+   +  + K+E++   
Sbjct: 973 KLQLEKVTADGKIKKMEDDILI 994

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 16/82 (19%), Positives = 35/82 (42%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
             +  KE   +EE  ++    + +++ K +   + + K E  I + E   ++EE+     +
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059

Query: 231  KKNEEEEEEEEVLIKLEEEEEN 252
            K   + E E   L +   E + 
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQA 1081

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 16/83 (19%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE-EEEEEVVK 229
             E + +  E++ +  ++EEE++    + E+E  ++     +I + E    + +E+ E  K
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136

Query: 230  QKKNEEEEEEEEVLIKLEEEEEN 252
              +N+ E+++ ++  +LE  +  
Sbjct: 1137 AARNKAEKQKRDLSEELEALKTE 1159

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
            +E +K + ++E E ++  E++ + + +  E + +  K+E+E++      E+E  ++    
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNAL 1115

Query: 231  KKNEEEEEE-EEVLIKLEEEEEN 252
            KK  E E    ++   LE E+  
Sbjct: 1116 KKIRELESHISDLQEDLESEKAA 1138

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKE------EEEEEEEKKEEDEIEKEEGENEEEEE 224
            EE +     +E+E +++   +K+ +  E      +E+ E EK   ++ EK++ +  EE E
Sbjct: 1095 EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELE 1154

Query: 225  EEVVKQKKNEEEEEEEEVLIKLEEEEE 251
                 + + E+  +      +L   + 
Sbjct: 1155 A---LKTELEDTLDTTATQQELRGSDY 1178

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 171  EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
                 EE+E  +   + + + +   ++ E   ++E+K   E+EK + + E E  +   + 
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQI 1076

Query: 231  KKNEEEEEE-EEVLIKLEEEEEN 252
             + + +  E +  L K EEE + 
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQA 1099

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 26/217 (11%)

Query: 13  EYFESYTDL--EVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQGH 69
           E +    +    +++  ++       +   I         + VLD+  GTG  ++ L   
Sbjct: 3   ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER 62

Query: 70  GVDHHSFCTKVHPLD-----------HYAPQYLILEVIQNKIENVELPEKVDIIVSEWMG 118
           G +       V  LD               + L +E +Q  +  +    + D +   +  
Sbjct: 63  GYE-------VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFST 115

Query: 119 FYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKF-WENIAGEEEKKEE 177
                E  +  +     + LKP GV             Y        W    GEE+    
Sbjct: 116 IMYFDEEDLRKLFSKVAEALKPGGVF----ITDFPCWFYGGRDGPVVWNEQKGEEKLVIM 171

Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
           D  E E   ++   K+         E +    D+   
Sbjct: 172 DWREVEPAVQKLRFKRLVQILRPNGEVKAFLVDDELN 208

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 20/138 (14%)

Query: 21  LEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV 80
            E    +L    R+  +R A+    ++  G  V  V  G    +L   +         ++
Sbjct: 92  YERLPAVLATRERHGHFRRALQ--RHLRPGCVVASVPCGWMSELLALDYSACPGV---QL 146

Query: 81  HPLDHYAPQYL--------------ILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESM 126
             +D Y P+ L               + + +     ++  E  D++ S  +  Y   ++ 
Sbjct: 147 VGID-YDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDAR 205

Query: 127 IDSVIFARDKFLKPEGVM 144
           +  +     + LKP G +
Sbjct: 206 VTELYRRFWQALKPGGAL 223

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 16/86 (18%), Positives = 34/86 (39%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           E     +E   + E +  E E    ++++K  ++ E E+ +KE  E+E      E     
Sbjct: 663 EITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNA 722

Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
           +   + + E    E E  +   + + 
Sbjct: 723 KAEAESRAEAARIEGEGSVLQAKLKA 748

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE-EDEIEKEEGENEEEEEEEVVK 229
            E +K  D+ E E+  +E    +  +   E     K E E   E    E E    +  +K
Sbjct: 688 LERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLK 747

Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
            +    E E E   +K   E E
Sbjct: 748 AQALAIETEAELERVKKVREME 769

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           +      ++  +  IE   N +E   K     E +  E+E +   E +K   ++E E+  
Sbjct: 648 QRTRDALQRSVQLAIEITTNSQEAAAKH----EAQRLEQEARGRLERQKILDQSEAEKAR 703

Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
           + + + +      E     K E E  
Sbjct: 704 KELLELEAMSMAVESTGNAKAEAESR 729

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           E    E+E +   E ++  ++ E E K +K   E E      E     K E E+  E   
Sbjct: 676 EAQRLEQEARGRLERQKILDQSEAE-KARKELLELEAMSMAVESTGNAKAEAESRAEAAR 734

Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
              +    + + + + + I+ E E E
Sbjct: 735 IEGEGSVLQAKLKAQALAIETEAELE 760

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 16/81 (19%), Positives = 31/81 (38%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           E   K E +  E+E     E ++  ++ E E+  ++  E E      E+    + E   +
Sbjct: 670 EAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESR 729

Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
            +    E E  VL    + + 
Sbjct: 730 AEAARIEGEGSVLQAKLKAQA 750

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE----E 221
           +    E+ +KE  E+E      E     K   E   E    + E  + + + + +    E
Sbjct: 695 DQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754

Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
            E E    +K  E E       ++LE  + 
Sbjct: 755 TEAELERVKKVREMELIYARAQLELEVSKA 784

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 39.4 bits (91), Expect = 8e-04
 Identities = 13/81 (16%), Positives = 30/81 (37%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
            + + +  E E     E +++  +   E+  +E  + E   +  E   N + E E   + 
Sbjct: 673 AKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEA 732

Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
            + E E    +  +K +    
Sbjct: 733 ARIEGEGSVLQAKLKAQALAI 753

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           +  +  + E +  E +   ++      +  E       E    K+    ++    +   +
Sbjct: 918 KNLEAFDGECQSLEGQSNSDLLSIL-AQLTELNYNGVPELTERKDTFFAQQWTGVKSSAE 976

Query: 231 KKNEEEEEEEEVLIKLEE 248
                   E E L K+E+
Sbjct: 977 TYKNTLLAELERLQKIED 994

>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus} Length = 213

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 17/79 (21%), Positives = 32/79 (40%)

Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
           E+ E+  +E+   +E E  +  + +   + EEE       E    E  E  E+    ++ 
Sbjct: 2   EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEEL 61

Query: 233 NEEEEEEEEVLIKLEEEEE 251
              + +  E+  KL E E 
Sbjct: 62  AAAKAQIAELEAKLSEMEH 80

>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus} Length = 213

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           + EK+  ++   +E E E+ ++++   + EEE      E+   +E  E  E+        
Sbjct: 3   QGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELA 62

Query: 231 KKNEEEEEEEEVLIKLEE 248
               +  E E  L ++E 
Sbjct: 63  AAKAQIAELEAKLSEMEH 80

>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus} Length = 213

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 18/87 (20%), Positives = 34/87 (39%)

Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
           E    E+   +E E E+   EE     ++++     EE   +E  E  ++    EE    
Sbjct: 5   EKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAA 64

Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
           +    +   +  E E   ++L  + EN
Sbjct: 65  KAQIAELEAKLSEMEHRYLRLYADFEN 91

>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus} Length = 213

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 17/73 (23%), Positives = 27/73 (36%)

Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
           +E+ E +  E+    + + E+  EEE   + E E      EE   EE  +  +     EE
Sbjct: 1   MEQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEE 60

Query: 240 EEVLIKLEEEEEN 252
                    E E 
Sbjct: 61  LAAAKAQIAELEA 73

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 27/163 (16%), Positives = 47/163 (28%), Gaps = 40/163 (24%)

Query: 3   MEVVKDHDEE--EYF----ESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDV 56
           M       E    Y+      Y    V          + A  AA+           VL++
Sbjct: 1   MTTSHGLIESQLSYYRARASEYDATFVPY-------MDSAAPAALERLRAGNIRGDVLEL 53

Query: 57  GTGTGK-SILLQGHGVDHHSFCTKVHPLD-----------HYAPQYLILEVIQNKIENVE 104
            +GTG  +  L G           V  LD           H       +E  Q  + +  
Sbjct: 54  ASGTGYWTRHLSGLADR-------VTALDGSAEMIAEAGRHGLDN---VEFRQQDLFDWT 103

Query: 105 LPEKVDIIVSEWMGFYLLH--ESMIDSVIFARDKFLKPEGVMY 145
              + D +   +   +L H  +   ++   +    + P GV+ 
Sbjct: 104 PDRQWDAV---FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVE 143

>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK----EEGENEEEEEEEVVK 229
             ++D +E E++   EE   ++N  E     + ++   I+         + EE +     
Sbjct: 2   PSDDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKT 61

Query: 230 QKKNEEEEEEEEVLIK 245
                  +E  E LIK
Sbjct: 62  VPDLNNCKENYEFLIK 77

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 21/117 (17%)

Query: 9   HDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQ 67
           +D+ ++F  Y+ L      LD      A RA + +      G  ++D+G G G       
Sbjct: 7   YDQPDFFAGYSQLGRSIEGLDGAAEWPALRAMLPE----VGGLRIVDLGCGFGWFCRWAH 62

Query: 68  GHGVDHHSFCTKVHPLD------HYAPQYL---ILEVIQNKIENVELP-EKVDIIVS 114
            HG  +      V  LD        A        +   +  ++ + LP +  D+  S
Sbjct: 63  EHGASY------VLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYS 113

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 18/124 (14%)

Query: 29  DDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLD--- 84
           +   R+      +     + AG  +L++G G G  +  +   G D       V   D   
Sbjct: 26  ERQPRSATLTKFL---GELPAGAKILELGCGAGYQAEAMLAAGFD-------VDATDGSP 75

Query: 85  ---HYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPE 141
                A + L   V       ++  +  D + +       +    +  V+    + LKP 
Sbjct: 76  ELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWA-HACLLHVPRDELADVLKLIWRALKPG 134

Query: 142 GVMY 145
           G+ Y
Sbjct: 135 GLFY 138

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 16/82 (19%), Positives = 41/82 (50%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
           E ++K E  +E++E   +E +KQ   K E +  +  KE++     + + +E+  +E  ++
Sbjct: 508 EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQK 567

Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
           +    + E +++  K+   +  
Sbjct: 568 ESRIMKNEIQDLQTKMRRRKAC 589

>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B Length = 241

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 18/57 (31%), Positives = 28/57 (49%)

Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
           GE  K EE E+  +    +     ++ + EEEE  E  EE   E +EGE E+  + +
Sbjct: 183 GELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNK 239

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 8  DHDEEEYFESYTDLEV----HKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK- 62
              E   + Y D E        + D   R   Y+A +           VLDV  GTG  
Sbjct: 12 GVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVD 71

Query: 63 SILLQGHGVD 72
          SI+L   G  
Sbjct: 72 SIMLVEEGFS 81

>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T* 1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S* 3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z 1pnu_T 1pny_T 1vor_W ... Length = 237

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 11/62 (17%), Positives = 20/62 (32%)

Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
              EE + E +  +           ++  E   E +   EE + E  E     + E+   
Sbjct: 176 LTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSD 235

Query: 229 KQ 230
            Q
Sbjct: 236 AQ 237

>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T* 1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S* 3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z 1pnu_T 1pny_T 1vor_W ... Length = 237

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 13/63 (20%), Positives = 22/63 (34%)

Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
           +   E  E E +  +        E  EE  E   E +   EE + E  E+      + N 
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234

Query: 235 EEE 237
           + +
Sbjct: 235 DAQ 237

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 36/228 (15%), Positives = 71/228 (31%), Gaps = 29/228 (12%)

Query: 1   MDMEVVKDHDEEEYFESYTDL--EVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGT 58
           M         + +Y     +L   VH+    D  R  A  AA+    +     ++LDV  
Sbjct: 1   MAHSSATAGPQADYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHSP-KAASLLDVAC 59

Query: 59  GTGK-SILLQGHGVDHHSFCTKVHPLDHYAPQYL--------ILEVIQNKIENVELPEKV 109
           GTG     L             V  L+  +   L           +    + +  L  + 
Sbjct: 60  GTGMHLRHLADSFGT-------VEGLE-LSADMLAIARRRNPDAVLHHGDMRDFSLGRRF 111

Query: 110 DIIVSEWMGF-YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENI 168
             +   +    +L  ++ +D+ +      + P+GV+     ++   P + PE F      
Sbjct: 112 SAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVV-----VVE--PWWFPENFTPGYVA 164

Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQ-KKNKEEEEEEEEKKEEDEIEKE 215
           AG  E           +  E E  + + +      +      +E  + 
Sbjct: 165 AGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRI 212

>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1 Length = 197

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 8/55 (14%), Positives = 23/55 (41%)

Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
            +E+K  +    EE   ++  + +  + E   E+    ++++   E +  E +  
Sbjct: 3   SKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTR 57

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 30/150 (20%)

Query: 35  EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILE 94
           EA R A+     +     + D+G GTG   L     V        +  +D +      +E
Sbjct: 32  EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQ-----ITGIDLFPDF---IE 83

Query: 95  VIQNKIENVELPEKV-----------------DIIVSEWMGFYLLHESMIDSVIFARDKF 137
           +           ++V                 D+I SE   + +  E  ++       K+
Sbjct: 84  IFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEW----SKY 139

Query: 138 LKPEGVMYPYKCILHSAPSYSPEIFKFWEN 167
           LK  G +               EI  FW +
Sbjct: 140 LKKGGFIAVS-EASWFTSERPAEIEDFWMD 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.94
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.88
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.87
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.86
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.85
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.8
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.67
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.67
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.6
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.59
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.57
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.57
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.56
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.55
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.54
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	99.54
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.54
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.53
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.53
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.53
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.52
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.51
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.51
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.51
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.5
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.5
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.5
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.5
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.5
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.49
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.49
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.49
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.49
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.49
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.48
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.48
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.48
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.48
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.47
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.47
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.46
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.46
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.46
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.45
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.45
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.45
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.45
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.45
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.45
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.45
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.44
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.44
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.44
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.43
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.43
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.43
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.43
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	99.43
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.43
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.43
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.43
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.43
3ocj_A	305	Putative exported protein; structural genomics, PS	99.42
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.42
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.42
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.4
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.4
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.39
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.39
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.39
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.39
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.39
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.38
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.38
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.37
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.37
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.37
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.36
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.35
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.35
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.35
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.34
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.34
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.34
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.33
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.33
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.32
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.32
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.32
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.31
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.31
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.31
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.3
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.29
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.29
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.29
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.29
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.28
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.28
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.28
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.27
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.26
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.26
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.26
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.26
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.25
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.25
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.25
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.24
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.24
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.24
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.24
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.23
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.23
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.23
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.23
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.22
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.22
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.22
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.22
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.22
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.21
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.21
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.21
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.21
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.21
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.21
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.21
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.2
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.2
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.2
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.2
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.2
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.19
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.19
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.19
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.19
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.18
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.18
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.18
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.17
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.17
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.17
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.17
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.17
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.16
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.16
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.16
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.16
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.16
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.16
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.15
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.15
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.15
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.15
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.14
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.14
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.14
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.13
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.13
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.13
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.13
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.12
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.12
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.12
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.12
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.11
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.11
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.09
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.09
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.07
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.07
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.07
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.07
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.07
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.07
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.06
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.06
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.06
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.05
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.05
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.05
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.05
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.05
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.04
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.04
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.04
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.04
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.04
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.04
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.04
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.03
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.02
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.02
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.02
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.01
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.01
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.01
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.01
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.0
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.0
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.0
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.99
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.99
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.98
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.98
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.97
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.97
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.97
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.97
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.96
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.96
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.94
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.94
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.94
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.93
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.93
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.92
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.91
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.91
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.91
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.9
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.9
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.9
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.9
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.9
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.9
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.89
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.89
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.88
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.87
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.87
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.87
2o07_A	304	Spermidine synthase; structural genomics, structur	98.86
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.86
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.85
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.85
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.85
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.84
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.84
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.83
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.82
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.82
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.81
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.81
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.79
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.77
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.73
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.72
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.72
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.71
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.66
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.65
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.65
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.64
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.63
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.6
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.6
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.52
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.51
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.43
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.43
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.43
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.41
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.4
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.39
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.39
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.31
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.3
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.28
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.27
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.25
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.23
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.21
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.2
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.2
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.19
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.18
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.13
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	98.1
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.09
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.02
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.98
3lkd_A	542	Type I restriction-modification system methyltrans	97.96
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.91
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.91
3khk_A	544	Type I restriction-modification system methylation	97.87
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.86
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.84
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.79
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.71
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.68
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.65
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.63
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.6
3ufb_A	530	Type I restriction-modification system methyltran	97.25
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.85
2oo3_A	283	Protein involved in catabolism of external DNA; st	95.75
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	95.73
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.16
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	94.93
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	94.93
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.68
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	94.68
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	94.48
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	94.25
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	93.94
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	93.93
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	93.75
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	93.71
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	93.48
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	93.43
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	93.06
2zig_A	297	TTHA0409, putative modification methylase; methylt	92.95
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	92.47
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	91.38
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	89.84
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	89.8
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	89.74
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	89.43
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	87.78
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	87.72
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	86.26
3me5_A	482	Cytosine-specific methyltransferase; structural ge	85.47
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	85.44
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	84.68
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	83.88
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	82.89
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	82.25
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	80.82
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	80.3

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.94  E-value=6.2e-27  Score=215.21  Aligned_cols=162  Identities=43%  Similarity=0.697  Sum_probs=144.4

Q ss_pred             ChhhHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEee
Q psy9773          10 DEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQ   89 (252)
Q Consensus        10 ~~~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD   89 (252)
                      .++.||++|+.+.+|..|++|..|+.+|+++|.++....+|++|||||||||  +|        ++++++.|+++|+|||
T Consensus        44 ~d~~Yf~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtG--iL--------s~~Aa~aGA~~V~ave  113 (376)
T 4hc4_A           44 RDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTG--IL--------SIFCAQAGARRVYAVE  113 (376)
T ss_dssp             -----CCCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTS--HH--------HHHHHHTTCSEEEEEE
T ss_pred             chhhhhhhccCcHHHHHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCcc--HH--------HHHHHHhCCCEEEEEe
Confidence            4567999999999999999999999999999988777789999999999999  99        9999999999999999


Q ss_pred             C-----------------CceEEEEccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773          90 Y-----------------LILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus        90 ~-----------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      .                 .+|+++++++.++.++.+||+|||.++.+.+.++..+..++....++|+|||++++...++|
T Consensus       114 ~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly  193 (376)
T 4hc4_A          114 ASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELF  193 (376)
T ss_dssp             CSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEE
T ss_pred             ChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccceEE
Confidence            8                 57999999999999899999999999999999999999999999999999999999999999


Q ss_pred             cCCCCChhH---HHHhhhh---hCCccccchhHHh
Q psy9773         153 SAPSYSPEI---FKFWENI---AGEEEKKEEDEIE  181 (252)
Q Consensus       153 ~~~~~~~~~---~~~w~~~---~g~~~~~~~~~~~  181 (252)
                      .+++....+   ..+|.++   |||+++++.....
T Consensus       194 ~apie~~~l~~~i~~w~~v~~~yGfd~s~~~~~~~  228 (376)
T 4hc4_A          194 IVPISDQMLEWRLGFWSQVKQHYGVDMSCLEGFAT  228 (376)
T ss_dssp             EEEECCHHHHHHHHGGGGHHHHHSCCCGGGHHHHH
T ss_pred             EEEeccchhhhhhcchhccccccCcCchhhhhhhh
Confidence            999887544   5678665   9999999976543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.88  E-value=1.3e-22  Score=184.52  Aligned_cols=168  Identities=38%  Similarity=0.694  Sum_probs=136.2

Q ss_pred             CCCChhhHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEE
Q psy9773           7 KDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHY   86 (252)
Q Consensus         7 ~~~~~~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~   86 (252)
                      ...+.+.||++|+.+..+..++++..+...|.+++.......++.+|||||||+|  .+        +..+++.|+.+|+
T Consensus        24 ~~~~~~~yf~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDvGcG~G--~~--------~~~la~~g~~~v~   93 (349)
T 3q7e_A           24 DMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTG--IL--------CMFAAKAGARKVI   93 (349)
T ss_dssp             -------------CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEESCTTS--HH--------HHHHHHTTCSEEE
T ss_pred             ccchHHHHHHhhhhhHHHHHHhccHHHHHHHHHHHHhccccCCCCEEEEEeccch--HH--------HHHHHHCCCCEEE
Confidence            3456778999999999999999999999999999987666778999999999999  77        7788888877999


Q ss_pred             EeeC-----------------CceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773          87 APQY-----------------LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        87 gvD~-----------------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      |+|+                 .+++++++|+.+++++ ++||+|++.++.+++.+...+..++..+.++|+|||++++..
T Consensus        94 gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  173 (349)
T 3q7e_A           94 GIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  173 (349)
T ss_dssp             EEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             EECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence            9999                 3499999999999887 899999999888888888899999999999999999999998


Q ss_pred             cccccCCCCChhH----HHHhhhhhCCccccchhHHhhhh
Q psy9773         149 CILHSAPSYSPEI----FKFWENIAGEEEKKEEDEIEEEE  184 (252)
Q Consensus       149 ~~~~~~~~~~~~~----~~~w~~~~g~~~~~~~~~~~~~~  184 (252)
                      ...+..+.....+    ..+|.+++||+++++......+|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~p  213 (349)
T 3q7e_A          174 ATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEP  213 (349)
T ss_dssp             EEEEEEEECCHHHHHHHTGGGGCBTTBCCGGGHHHHHTSC
T ss_pred             ceEEEeeecChhhhhhhhcccccccCcchHHHhHhhhcCc
Confidence            8877777766554    56899999999999987766554

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.87  E-value=1.8e-21  Score=178.74  Aligned_cols=165  Identities=45%  Similarity=0.680  Sum_probs=140.4

Q ss_pred             CCChhhHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEE
Q psy9773           8 DHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYA   87 (252)
Q Consensus         8 ~~~~~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~g   87 (252)
                      ..+.+.||+.|+.+..+..|+++..++..|.+++.......++.+|||||||+|  .+        +..+++.|+++|+|
T Consensus        22 ~~~~~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG--~l--------s~~la~~g~~~V~g   91 (376)
T 3r0q_C           22 EVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSG--IL--------AIWSAQAGARKVYA   91 (376)
T ss_dssp             ------CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTT--HH--------HHHHHHTTCSEEEE
T ss_pred             cccHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcC--HH--------HHHHHhcCCCEEEE
Confidence            456678999999999999999999999999999988888889999999999999  77        78888888779999


Q ss_pred             eeC-----------------CceEEEEccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          88 PQY-----------------LILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        88 vD~-----------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|+                 .+++++++|+.+++++++||+|++.++.+++.+...+..++..+.++|+|||+|++....
T Consensus        92 vD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C           92 VEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             EESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             EccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            999                 348999999999988889999999888888888888999999999999999999999988


Q ss_pred             cccCCCCChhHH--------------HHh---hhhhCCccccchhHHhh
Q psy9773         151 LHSAPSYSPEIF--------------KFW---ENIAGEEEKKEEDEIEE  182 (252)
Q Consensus       151 ~~~~~~~~~~~~--------------~~w---~~~~g~~~~~~~~~~~~  182 (252)
                      .+..+.....+.              .+|   .+.+|++++.+...+.+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~W~~fw~~~~~~~G~d~~~~~~~~~~  220 (376)
T 3r0q_C          172 MWLAPIKSNIADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAE  220 (376)
T ss_dssp             EEEEEECCTHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCGGGHHHHHH
T ss_pred             EEEEeecchHHhhhhhhhhhhhhhhhhhhhccCccccCChHHHHhhhhh
Confidence            777776654431              677   78899999999987543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.86  E-value=9.7e-22  Score=177.25  Aligned_cols=162  Identities=40%  Similarity=0.715  Sum_probs=138.7

Q ss_pred             hHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--
Q psy9773          13 EYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--   90 (252)
Q Consensus        13 ~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--   90 (252)
                      .||++|+.+.+|..|+++..++..|.+++.......++.+|||+|||+|  .+        +..+++.|+.+|+|+|+  
T Consensus         2 ~Yf~~y~~~~~~~~ml~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG--~l--------s~~la~~g~~~v~~vD~s~   71 (328)
T 1g6q_1            2 YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTG--IL--------SMFAAKHGAKHVIGVDMSS   71 (328)
T ss_dssp             CCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTS--HH--------HHHHHHTCCSEEEEEESST
T ss_pred             chhhhhcCchHHHHHhcCHHHHHHHHHHHHhhHhhcCCCEEEEecCccH--HH--------HHHHHHCCCCEEEEEChHH
Confidence            5899999999999999999999999999876556678899999999999  77        78888887778999999  


Q ss_pred             ---------------CceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccC
Q psy9773          91 ---------------LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSA  154 (252)
Q Consensus        91 ---------------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~  154 (252)
                                     .+++++++|+.+++++ ++||+|++.++.+++.+...+..++..+.++|+|||++++...+.+..
T Consensus        72 ~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~  151 (328)
T 1g6q_1           72 IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLA  151 (328)
T ss_dssp             HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEE
Confidence                           3589999999999877 889999999887778788889999999999999999999888776666


Q ss_pred             CCCChhH----HHHhhhhhCCccccchhHHhhhh
Q psy9773         155 PSYSPEI----FKFWENIAGEEEKKEEDEIEEEE  184 (252)
Q Consensus       155 ~~~~~~~----~~~w~~~~g~~~~~~~~~~~~~~  184 (252)
                      +.....+    ..+|.+.+||+++.+.......|
T Consensus       152 ~~~~~~~~~~~~~~w~~~~gf~~~~~~~~~~~~~  185 (328)
T 1g6q_1          152 GLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEP  185 (328)
T ss_dssp             EECCHHHHHHHHHHTTCBTTBCCTTHHHHHTTSC
T ss_pred             EecCchhhhhhhcccccccCcChHHHhhhhhcCC
Confidence            6555433    56799999999999887765443

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.85  E-value=8e-21  Score=172.18  Aligned_cols=164  Identities=40%  Similarity=0.725  Sum_probs=137.6

Q ss_pred             hhhHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          11 EEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        11 ~~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      +..||+.|....++..|+++..++..|.+++.......++.+|||||||+|  .+        +..+++.|+.+|+|+|+
T Consensus        26 d~~Y~~~y~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG--~l--------s~~la~~g~~~v~gvD~   95 (340)
T 2fyt_A           26 DGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTG--IL--------SMFAAKAGAKKVLGVDQ   95 (340)
T ss_dssp             ----CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTS--HH--------HHHHHHTTCSEEEEEES
T ss_pred             hhhHHHhhcchhHHHHHhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccCc--HH--------HHHHHHcCCCEEEEECh
Confidence            345999999999999999999999999999988777788999999999999  77        77888887778999999


Q ss_pred             -----------------CceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773          91 -----------------LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus        91 -----------------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                                       .++.++++|+.+++++ ++||+|++.++.+.+.+...+..++..+.++|+|||++++...+.+
T Consensus        96 s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~  175 (340)
T 2fyt_A           96 SEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTIS  175 (340)
T ss_dssp             STHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEE
Confidence                             3689999999999877 8899999988777777888899999999999999999998877766


Q ss_pred             cCCCCChhH----HHHhhhhhCCccccchhHHhhhh
Q psy9773         153 SAPSYSPEI----FKFWENIAGEEEKKEEDEIEEEE  184 (252)
Q Consensus       153 ~~~~~~~~~----~~~w~~~~g~~~~~~~~~~~~~~  184 (252)
                      ..+.....+    ..+|.+.+||+++.+.+.....+
T Consensus       176 ~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~  211 (340)
T 2fyt_A          176 LVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEA  211 (340)
T ss_dssp             EEEECCHHHHHHHTGGGGCBTTBCCGGGHHHHTTBC
T ss_pred             EEEecchhHhhhhhcccccccCcChHHHHHhhhcCc
Confidence            665544332    56799999999998887654443

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.80  E-value=7e-19  Score=159.72  Aligned_cols=161  Identities=35%  Similarity=0.548  Sum_probs=132.9

Q ss_pred             CChhhHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEe
Q psy9773           9 HDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAP   88 (252)
Q Consensus         9 ~~~~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gv   88 (252)
                      .+.+.||+.|..+..+..|+++..+...|.+++.......++.+|||||||+|  .+        +..+++.|+.+|+|+
T Consensus        10 ~~~~~y~~~y~~~~~~~~ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG--~l--------s~~la~~g~~~V~~v   79 (348)
T 2y1w_A           10 SSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSG--IL--------SFFAAQAGARKIYAV   79 (348)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTS--HH--------HHHHHHTTCSEEEEE
T ss_pred             ccHHHHHHHHhhhhHHHHHhcchHHHHHHHHHHHhccccCCcCEEEEcCCCcc--HH--------HHHHHhCCCCEEEEE
Confidence            34567999999999999999999999999999988777778999999999999  77        778888777789999


Q ss_pred             eC-----------------CceEEEEccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773          89 QY-----------------LILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus        89 D~-----------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                      |+                 .+++++.+|+.+++.+++||+|++.++++++.+. .+...+..+.++|+|||++++...+.
T Consensus        80 D~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~~~~~-~~~~~l~~~~~~LkpgG~li~~~~~~  158 (348)
T 2y1w_A           80 EASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNE-RMLESYLHAKKYLKPSGNMFPTIGDV  158 (348)
T ss_dssp             ECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBTTBTTT-SHHHHHHHGGGGEEEEEEEESCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchhcCChH-HHHHHHHHHHhhcCCCeEEEEecCcE
Confidence            99                 3689999999998777889999998887766544 45667778899999999999988877


Q ss_pred             ccCCCCChhH-------HHHh--hhhhCCccccchhHH
Q psy9773         152 HSAPSYSPEI-------FKFW--ENIAGEEEKKEEDEI  180 (252)
Q Consensus       152 ~~~~~~~~~~-------~~~w--~~~~g~~~~~~~~~~  180 (252)
                      +..+.....+       ..+|  ..++|++++.+....
T Consensus       159 ~~~~i~~~~~~~~~~~~~~~w~~~~~~g~d~~~l~~~~  196 (348)
T 2y1w_A          159 HLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAA  196 (348)
T ss_dssp             EEEEECCHHHHHHHHHHHGGGCCSCBTTBCCGGGHHHH
T ss_pred             EEEEecchHHhhhhccccCcccccccCcccHHHhhhHH
Confidence            7666554432       3456  467899998887654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.67  E-value=1.3e-16  Score=136.97  Aligned_cols=132  Identities=19%  Similarity=0.228  Sum_probs=85.0

Q ss_pred             CCccccCCCChhhHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc
Q psy9773           1 MDMEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV   80 (252)
Q Consensus         1 ~~m~~~~~~~~~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~   80 (252)
                      |.|... .|+...||+.|.........+.    .......+.......++.+|||+|||+|  .+        +..++..
T Consensus         1 M~m~~~-~y~~~~~~~~y~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~vLD~GcG~G--~~--------~~~l~~~   65 (253)
T 3g5l_A            1 MSLKEN-KYDDKHFFEQYSQMPRSKEGLK----AAGEWHELKKMLPDFNQKTVLDLGCGFG--WH--------CIYAAEH   65 (253)
T ss_dssp             -------------------------CHHH----HHHHHHHHHTTCCCCTTCEEEEETCTTC--HH--------HHHHHHT
T ss_pred             CCcccc-ccccHHHHHHHHHhhccccccc----chhhHHHHHHhhhccCCCEEEEECCCCC--HH--------HHHHHHc
Confidence            555542 3666778888877543322221    1222333444455568899999999999  66        6777777


Q ss_pred             CCCcEEEeeC--------------CceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEE
Q psy9773          81 HPLDHYAPQY--------------LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMY  145 (252)
Q Consensus        81 g~~~v~gvD~--------------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv  145 (252)
                      ++.+|+|+|+              .++.++++|+..++++ ++||+|++..+++++   .++..+|..+.++|+|||+|+
T Consensus        66 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~  142 (253)
T 3g5l_A           66 GAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI---ASFDDICKKVYINLKSSGSFI  142 (253)
T ss_dssp             TCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh---hhHHHHHHHHHHHcCCCcEEE
Confidence            7668999999              4789999999998876 899999998887776   678899999999999999999


Q ss_pred             eeccc
Q psy9773         146 PYKCI  150 (252)
Q Consensus       146 ~~~~~  150 (252)
                      +..+.
T Consensus       143 ~~~~~  147 (253)
T 3g5l_A          143 FSVEH  147 (253)
T ss_dssp             EEEEC
T ss_pred             EEeCC
Confidence            98543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.67  E-value=1.7e-16  Score=150.17  Aligned_cols=157  Identities=36%  Similarity=0.566  Sum_probs=124.9

Q ss_pred             hHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--
Q psy9773          13 EYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--   90 (252)
Q Consensus        13 ~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--   90 (252)
                      .|++.|.....+..++.+..++..+...+.......++.+|||||||+|  .+        +..+++.++.+|+|+|+  
T Consensus       122 ~~~~~y~~~~~~~~~L~d~~~t~~~~~~il~~l~~~~~~~VLDiGcGtG--~l--------a~~la~~~~~~V~gvD~s~  191 (480)
T 3b3j_A          122 QYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSG--IL--------SFFAAQAGARKIYAVEAST  191 (480)
T ss_dssp             EEEEGGGCSCHHHHHHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTT--HH--------HHHHHHTTCSEEEEEECHH
T ss_pred             hHHHHHhhhccchhhhcChHhHHHHHHHHHHhhhhcCCCEEEEecCccc--HH--------HHHHHHcCCCEEEEEEcHH
Confidence            4666777666678899999999999998887666678899999999999  77        77777777778999999  


Q ss_pred             ---------------CceEEEEccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCC
Q psy9773          91 ---------------LILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP  155 (252)
Q Consensus        91 ---------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~  155 (252)
                                     .+++++++|+.+++++++||+|++.++++++.+. .....+..+.++|+|||++++.....+..+
T Consensus       192 ~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~~~~~e-~~~~~l~~~~~~LkpgG~li~~~~~~~~~p  270 (480)
T 3b3j_A          192 MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNE-RMLESYLHAKKYLKPSGNMFPTIGDVHLAP  270 (480)
T ss_dssp             HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHHHHTCH-HHHHHHHHGGGGEEEEEEEESCEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchHhcCcH-HHHHHHHHHHHhcCCCCEEEEEeceeeeec
Confidence                           4689999999998777889999998877766555 455667788999999999999887777666


Q ss_pred             CCChhH-------HHHh--hhhhCCccccchhHH
Q psy9773         156 SYSPEI-------FKFW--ENIAGEEEKKEEDEI  180 (252)
Q Consensus       156 ~~~~~~-------~~~w--~~~~g~~~~~~~~~~  180 (252)
                      .....+       ..+|  ..++|++++.+....
T Consensus       271 i~~~~l~~e~~~~~~~w~~~~~~g~dl~~l~~~~  304 (480)
T 3b3j_A          271 FTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAA  304 (480)
T ss_dssp             ECCHHHHHHHHHHHHHHHSSCBTTBCCGGGHHHH
T ss_pred             cCchHHHHHHhhccCccccccCCCcChhhhhhHH
Confidence            555432       3456  367899998887653

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.60  E-value=9.8e-15  Score=125.16  Aligned_cols=100  Identities=19%  Similarity=0.198  Sum_probs=81.6

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQN   98 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~   98 (252)
                      ....+.......++.+|||+|||+|  .+        +..++..+..+|+|+|+                  .++.++++
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiG~G~G--~~--------~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~  103 (257)
T 3f4k_A           34 TRKAVSFINELTDDAKIADIGCGTG--GQ--------TLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITG  103 (257)
T ss_dssp             HHHHHTTSCCCCTTCEEEEETCTTS--HH--------HHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             HHHHHHHHhcCCCCCeEEEeCCCCC--HH--------HHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            3344444346678899999999999  66        66777765458999999                  23999999


Q ss_pred             cccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          99 KIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        99 d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+..++++ ++||+|++..+++++    ++..++..+.++|+|||++++..+.
T Consensus       104 d~~~~~~~~~~fD~v~~~~~l~~~----~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          104 SMDNLPFQNEELDLIWSEGAIYNI----GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             CTTSCSSCTTCEEEEEEESCSCCC----CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             ChhhCCCCCCCEEEEEecChHhhc----CHHHHHHHHHHHcCCCcEEEEEEee
Confidence            99998876 899999998876665    5788999999999999999998865

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.59  E-value=1.1e-14  Score=126.06  Aligned_cols=100  Identities=18%  Similarity=0.188  Sum_probs=81.7

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQN   98 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~   98 (252)
                      ....+.......++.+|||||||+|  .+        +..++..+..+|+|+|+                  .++.++++
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiGcG~G--~~--------~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  103 (267)
T 3kkz_A           34 TLKALSFIDNLTEKSLIADIGCGTG--GQ--------TMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVG  103 (267)
T ss_dssp             HHHHHTTCCCCCTTCEEEEETCTTC--HH--------HHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             HHHHHHhcccCCCCCEEEEeCCCCC--HH--------HHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEc
Confidence            3334433344678899999999999  66        66777765568999999                  34999999


Q ss_pred             cccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          99 KIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        99 d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+.+++++ ++||+|++..+++++    ++..++..+.++|+|||++++..+.
T Consensus       104 d~~~~~~~~~~fD~i~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          104 SMDDLPFRNEELDLIWSEGAIYNI----GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             CTTSCCCCTTCEEEEEESSCGGGT----CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             ChhhCCCCCCCEEEEEEcCCceec----CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            99998876 889999998887766    5788999999999999999998865

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.57  E-value=9.1e-15  Score=123.83  Aligned_cols=90  Identities=17%  Similarity=0.165  Sum_probs=76.5

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------C-ceEEEEccccccCCCCceeEEE
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------L-ILEVIQNKIENVELPEKVDIIV  113 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~-~i~~~~~d~~~~~~~~~fDlIv  113 (252)
                      ..++.+|||||||+|  .+        +..++..++ +|+|+|+            . ++.++++|+.++..+++||+|+
T Consensus        40 ~~~~~~vLDiGcG~G--~~--------~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~  108 (250)
T 2p7i_A           40 FFRPGNLLELGSFKG--DF--------TSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIV  108 (250)
T ss_dssp             GCCSSCEEEESCTTS--HH--------HHHHTTTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEE
T ss_pred             hcCCCcEEEECCCCC--HH--------HHHHHHhCC-cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEE
Confidence            357789999999999  66        677777764 7999999            2 7899999999885458899999


Q ss_pred             ecccccccCChhhHHHHHHHHh-ccccCCeEEEeeccc
Q psy9773         114 SEWMGFYLLHESMIDSVIFARD-KFLKPEGVMYPYKCI  150 (252)
Q Consensus       114 ~~~~~~~l~~~~~~~~~l~~l~-~~LkpgG~lv~~~~~  150 (252)
                      +..+++++   .++..+|..+. ++|+|||++++..+.
T Consensus       109 ~~~~l~~~---~~~~~~l~~~~~~~LkpgG~l~i~~~~  143 (250)
T 2p7i_A          109 LTHVLEHI---DDPVALLKRINDDWLAEGGRLFLVCPN  143 (250)
T ss_dssp             EESCGGGC---SSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             EhhHHHhh---cCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            98887777   56789999999 999999999998754

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.57  E-value=8.3e-15  Score=122.62  Aligned_cols=103  Identities=16%  Similarity=0.068  Sum_probs=84.5

Q ss_pred             HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccc
Q psy9773          36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKI  100 (252)
Q Consensus        36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~  100 (252)
                      .+...+.......++.+|||+|||+|  .+        +..++..+ .+++|+|+               .++.++++|+
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~  106 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAG--AF--------TEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWSHISWAATDI  106 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTS--HH--------HHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCT
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCC--HH--------HHHHHHcC-CEEEEEECCHHHHHHHHHhcccCCCeEEEEcch
Confidence            34444443355667889999999999  66        66777765 47999999               4689999999


Q ss_pred             cccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         101 ENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       101 ~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .+++.+++||+|++..+++++.....+..++..+.++|+|||+|++..+
T Consensus       107 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          107 LQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             TTCCCSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhCCCCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            9998568999999999888887666678899999999999999999764

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.56  E-value=2.2e-14  Score=121.48  Aligned_cols=95  Identities=20%  Similarity=0.257  Sum_probs=77.5

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------CceEEEEccccccCCCCc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------~~i~~~~~d~~~~~~~~~  108 (252)
                      ....++.+|||+|||+|  .+        +..++... ..+++|+|+               .++.++++|+.+++++++
T Consensus        40 ~~~~~~~~vLDiG~G~G--~~--------~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~  109 (234)
T 3dtn_A           40 SVDTENPDILDLGAGTG--LL--------SAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEK  109 (234)
T ss_dssp             CCSCSSCEEEEETCTTS--HH--------HHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSC
T ss_pred             hcCCCCCeEEEecCCCC--HH--------HHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCC
Confidence            33567899999999999  55        55666653 358999999               379999999999987789


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ||+|++..+++++ .......++..+.++|+|||++++....
T Consensus       110 fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~  150 (234)
T 3dtn_A          110 YDMVVSALSIHHL-EDEDKKELYKRSYSILKESGIFINADLV  150 (234)
T ss_dssp             EEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ceEEEEeCccccC-CHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            9999998887777 3334557999999999999999998754

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.55  E-value=1.5e-14  Score=122.69  Aligned_cols=93  Identities=14%  Similarity=0.190  Sum_probs=77.9

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------CceEEEEccccccCCC-Cce
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LILEVIQNKIENVELP-EKV  109 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~i~~~~~d~~~~~~~-~~f  109 (252)
                      ....++.+|||+|||+|  .+        +..++..+..+++|+|+              .++.++++|+..++++ ++|
T Consensus        39 ~~~~~~~~vLdiG~G~G--~~--------~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f  108 (243)
T 3bkw_A           39 LPEVGGLRIVDLGCGFG--WF--------CRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSF  108 (243)
T ss_dssp             SCCCTTCEEEEETCTTC--HH--------HHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCE
T ss_pred             ccccCCCEEEEEcCcCC--HH--------HHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCc
Confidence            34567899999999999  66        66677766558999999              3689999999998775 789


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|++..+++++   .++..+|..+.++|+|||++++..+.
T Consensus       109 D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          109 DLAYSSLALHYV---EDVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             EEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEEecccccc---chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence            999998877766   57889999999999999999997653

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.54  E-value=1.7e-14  Score=125.88  Aligned_cols=88  Identities=17%  Similarity=0.137  Sum_probs=75.1

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCCC-CceeEEEec
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVELP-EKVDIIVSE  115 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~-~~fDlIv~~  115 (252)
                      ..+.+|||||||+|  .+        +..++..+ .+|+|+|+           .++.++++++.+++++ ++||+|+|.
T Consensus        38 ~~~~~vLDvGcGtG--~~--------~~~l~~~~-~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~  106 (257)
T 4hg2_A           38 PARGDALDCGCGSG--QA--------SLGLAEFF-ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAA  106 (257)
T ss_dssp             SCSSEEEEESCTTT--TT--------HHHHHTTC-SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEcCCCC--HH--------HHHHHHhC-CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEe
Confidence            45579999999999  66        67777776 57999999           6899999999999887 899999998


Q ss_pred             ccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       116 ~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .++|++    ++..++.++.|+|||||+|++....
T Consensus       107 ~~~h~~----~~~~~~~e~~rvLkpgG~l~~~~~~  137 (257)
T 4hg2_A          107 QAMHWF----DLDRFWAELRRVARPGAVFAAVTYG  137 (257)
T ss_dssp             SCCTTC----CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eehhHh----hHHHHHHHHHHHcCCCCEEEEEECC
Confidence            876665    5678999999999999999876643

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=99.54  E-value=6.3e-15  Score=142.96  Aligned_cols=124  Identities=25%  Similarity=0.329  Sum_probs=103.2

Q ss_pred             HhccHHHHHHHHHHHHhC--------CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC---C--cEEEeeC---
Q psy9773          27 MLDDTVRNEAYRAAICDN--------PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP---L--DHYAPQY---   90 (252)
Q Consensus        27 ~l~~~~~~~~~~~~l~~~--------~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~---~--~v~gvD~---   90 (252)
                      .-+|++++..|.++|...        .....+.+|||||||+|  .|        +.+++++++   .  +|+||+.   
T Consensus       327 FEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrG--pL--------v~~al~A~a~~~~~vkVyAVEknp~  396 (637)
T 4gqb_A          327 FEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRG--PL--------VNASLRAAKQADRRIKLYAVEKNPN  396 (637)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTS--HH--------HHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred             hcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCc--HH--------HHHHHHHHHhcCCCcEEEEEECCHH
Confidence            456888899999888642        23344568999999999  77        555544433   2  6899998   


Q ss_pred             --------------CceEEEEccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCC
Q psy9773          91 --------------LILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPS  156 (252)
Q Consensus        91 --------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~  156 (252)
                                    ++|+++++|++++..|.++|+||+.+|++++.++..+ .++....++|||||+++++..+.|.+++
T Consensus       397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~ml-evL~Ardr~LKPgGimiPs~atlyiapi  475 (637)
T 4gqb_A          397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSP-ECLDGAQHFLKDDGVSIPGEYTSFLAPI  475 (637)
T ss_dssp             HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEESCEEEEEEEEE
T ss_pred             HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCH-HHHHHHHHhcCCCcEEccccceEEEEEe
Confidence                          7899999999999999999999999999999999766 6888999999999999999999999998


Q ss_pred             CChhH
Q psy9773         157 YSPEI  161 (252)
Q Consensus       157 ~~~~~  161 (252)
                      ....+
T Consensus       476 ~~~~l  480 (637)
T 4gqb_A          476 SSSKL  480 (637)
T ss_dssp             ECHHH
T ss_pred             cCHHH
Confidence            87664

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.54  E-value=1.5e-14  Score=126.37  Aligned_cols=93  Identities=17%  Similarity=0.199  Sum_probs=75.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC---CCcEEEeeC------------------CceEEEEccccccC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH---PLDHYAPQY------------------LILEVIQNKIENVE  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g---~~~v~gvD~------------------~~i~~~~~d~~~~~  104 (252)
                      ...+|.+|||||||+|  .+        +..+++..   ..+|+|+|+                  .+++++++|+.+++
T Consensus        67 ~~~~~~~vLDlGcGtG--~~--------~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~  136 (261)
T 4gek_A           67 FVQPGTQVYDLGCSLG--AA--------TLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA  136 (261)
T ss_dssp             HCCTTCEEEEETCTTT--HH--------HHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC
T ss_pred             hCCCCCEEEEEeCCCC--HH--------HHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc
Confidence            4678999999999999  55        55555531   137999999                  47899999999987


Q ss_pred             CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      + +.||+|++..++++++ ..+...+|.+++++|+|||+|++....
T Consensus       137 ~-~~~d~v~~~~~l~~~~-~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          137 I-ENASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             C-CSEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             c-cccccceeeeeeeecC-chhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            6 4699999988888764 346778999999999999999998754

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.53  E-value=2.2e-14  Score=119.22  Aligned_cols=90  Identities=24%  Similarity=0.355  Sum_probs=74.8

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC-
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP-  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~-  106 (252)
                      ...++ +|||+|||+|  .+        +..++..+..+++|+|+                  .++.++++|+.+++++ 
T Consensus        41 ~~~~~-~vLdiG~G~G--~~--------~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  109 (219)
T 3dlc_A           41 GITAG-TCIDIGSGPG--AL--------SIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED  109 (219)
T ss_dssp             CCCEE-EEEEETCTTS--HH--------HHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred             CCCCC-EEEEECCCCC--HH--------HHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence            34445 9999999999  66        56666653358999999                  3699999999998877 


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++||+|++..+++++   .++..++..+.++|+|||++++...
T Consensus       110 ~~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~  149 (219)
T 3dlc_A          110 NYADLIVSRGSVFFW---EDVATAFREIYRILKSGGKTYIGGG  149 (219)
T ss_dssp             TCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccccEEEECchHhhc---cCHHHHHHHHHHhCCCCCEEEEEec
Confidence            889999998887776   6788999999999999999999753

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.53  E-value=6.9e-15  Score=127.88  Aligned_cols=93  Identities=15%  Similarity=0.174  Sum_probs=74.6

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC----------------------------------
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL----------------------------------   91 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~----------------------------------   91 (252)
                      ...++.+|||||||+|  .+        +..++..++.+|+|+|+.                                  
T Consensus        52 ~~~~g~~vLDiGCG~G--~~--------~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~  121 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPT--IY--------QVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNS  121 (263)
T ss_dssp             TSCCEEEEEESSCTTC--CG--------GGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCG
T ss_pred             CCCCCceEEEeCCCcc--HH--------HHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCC
Confidence            4567889999999999  66        666666666689999992                                  


Q ss_pred             ------------ce-EEEEcccccc-CC----CCceeEEEeccccccc-CChhhHHHHHHHHhccccCCeEEEeec
Q psy9773          92 ------------IL-EVIQNKIENV-EL----PEKVDIIVSEWMGFYL-LHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        92 ------------~i-~~~~~d~~~~-~~----~~~fDlIv~~~~~~~l-~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                                  ++ .++++|+... ++    .++||+|++..+++++ .+..++..++.+++++|||||+|++..
T Consensus       122 ~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          122 GRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             GGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                        02 2889999884 22    2689999999988875 455688899999999999999999985

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.53  E-value=7.5e-15  Score=128.57  Aligned_cols=106  Identities=13%  Similarity=0.053  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------------Cc
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------------LI   92 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------------~~   92 (252)
                      ...+...+.......++.+|||||||+|  .+        +..++..++ +|+|+|+                     .+
T Consensus        42 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G--~~--------~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~  110 (293)
T 3thr_A           42 TAEYKAWLLGLLRQHGCHRVLDVACGTG--VD--------SIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDK  110 (293)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEETTCTTS--HH--------HHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHT
T ss_pred             HHHHHHHHHHHhcccCCCEEEEecCCCC--HH--------HHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccce
Confidence            3444444443333457789999999999  66        667777765 8999999                     24


Q ss_pred             eEEEEccccccC---CC-CceeEEEec-ccccccCC----hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          93 LEVIQNKIENVE---LP-EKVDIIVSE-WMGFYLLH----ESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        93 i~~~~~d~~~~~---~~-~~fDlIv~~-~~~~~l~~----~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.+..+|+..++   ++ ++||+|+|. .+++++..    ...+..++..+.++|+|||+|++..+.
T Consensus       111 ~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          111 WVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             CEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             eeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            668899998876   44 899999997 67777755    345899999999999999999988754

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.52  E-value=5.2e-14  Score=120.56  Aligned_cols=97  Identities=18%  Similarity=0.177  Sum_probs=78.6

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIEN  102 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~  102 (252)
                      +.......++.+|||||||+|  .+        +..++.....+|+|+|+                  .++.++++|+.+
T Consensus        28 l~~~~~~~~~~~VLDiGcG~G--~~--------~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~   97 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGSG--EM--------LCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   97 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTTC--HH--------HHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             HHHhcCCCCCCEEEEECCCCC--HH--------HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh
Confidence            333345778899999999999  55        55665542357999999                  269999999999


Q ss_pred             cCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         103 VELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       103 ~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +++.++||+|++..+++++   .++..+|..+.++|+|||+|++..+.
T Consensus        98 ~~~~~~fD~V~~~~~~~~~---~~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A           98 YVANEKCDVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             CCCSSCEEEEEEESCGGGT---SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             CCcCCCCCEEEECCChHhc---CCHHHHHHHHHHHcCCCeEEEEecCc
Confidence            8767889999998776666   56789999999999999999998754

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.51  E-value=4.6e-14  Score=119.55  Aligned_cols=92  Identities=21%  Similarity=0.210  Sum_probs=78.5

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCceeE
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKVDI  111 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fDl  111 (252)
                      .++.+|||+|||+|  .+        +..++..+ .+++|+|+                .++.++++|+..++++++||+
T Consensus        36 ~~~~~vLdiG~G~G--~~--------~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~  104 (246)
T 1y8c_A           36 LVFDDYLDLACGTG--NL--------TENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDL  104 (246)
T ss_dssp             CCTTEEEEETCTTS--TT--------HHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEE
T ss_pred             CCCCeEEEeCCCCC--HH--------HHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceE
Confidence            47789999999999  65        66667666 47999999                178999999999877788999


Q ss_pred             EEecc-cccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         112 IVSEW-MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       112 Iv~~~-~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |++.. +++++....++..+|..+.++|+|||++++..+.
T Consensus       105 v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (246)
T 1y8c_A          105 ITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             EEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            99987 8888766678999999999999999999986553

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.51  E-value=2.1e-14  Score=122.47  Aligned_cols=94  Identities=15%  Similarity=0.135  Sum_probs=77.8

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------CceEEEEcccccc--CCC-CceeEE
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------LILEVIQNKIENV--ELP-EKVDII  112 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------~~i~~~~~d~~~~--~~~-~~fDlI  112 (252)
                      ....++.+|||||||+|  .+        +..++..++ +|+|+|+         .++.++.+|+.++  +++ ++||+|
T Consensus        37 ~~~~~~~~vLDiGcG~G--~~--------~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i  105 (240)
T 3dli_A           37 PYFKGCRRVLDIGCGRG--EF--------LELCKEEGI-ESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGV  105 (240)
T ss_dssp             GGTTTCSCEEEETCTTT--HH--------HHHHHHHTC-CEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEE
T ss_pred             hhhcCCCeEEEEeCCCC--HH--------HHHHHhCCC-cEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEE
Confidence            34567799999999999  66        666777764 6999999         4589999999886  555 889999


Q ss_pred             EecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++..+++++. .+++..++..+.++|+|||++++..+.
T Consensus       106 ~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          106 MISHFVEHLD-PERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             EEESCGGGSC-GGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             EECCchhhCC-cHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            9988888774 336799999999999999999998764

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.51  E-value=5.8e-14  Score=116.97  Aligned_cols=94  Identities=13%  Similarity=0.001  Sum_probs=77.5

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCCCCceeE
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVELPEKVDI  111 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~~~~fDl  111 (252)
                      ....++.+|||+|||+|  .+        +..++..+ .+++|+|+             .++.++++|+.++..+++||+
T Consensus        42 ~~~~~~~~vLdiG~G~G--~~--------~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~  110 (218)
T 3ou2_A           42 RAGNIRGDVLELASGTG--YW--------TRHLSGLA-DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDA  110 (218)
T ss_dssp             TTTTSCSEEEEESCTTS--HH--------HHHHHHHS-SEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEE
T ss_pred             hcCCCCCeEEEECCCCC--HH--------HHHHHhcC-CeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeE
Confidence            44677789999999999  66        66677666 47999999             568999999998843489999


Q ss_pred             EEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |++..+++++.. +....+|..+.++|+|||++++....
T Consensus       111 v~~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          111 VFFAHWLAHVPD-DRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             EEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEechhhcCCH-HHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            999888777733 24689999999999999999998764

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.50  E-value=7.5e-14  Score=120.46  Aligned_cols=91  Identities=13%  Similarity=0.105  Sum_probs=78.6

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCCCceeEEEe
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELPEKVDIIVS  114 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~~~fDlIv~  114 (252)
                      ..++.+|||||||+|  .+        +..++..+ .+|+|+|+            .++.++++|+..++.+++||+|+|
T Consensus        48 ~~~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~  116 (263)
T 3pfg_A           48 SPKAASLLDVACGTG--MH--------LRHLADSF-GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTC  116 (263)
T ss_dssp             CTTCCEEEEETCTTS--HH--------HHHHTTTS-SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEE
T ss_pred             CCCCCcEEEeCCcCC--HH--------HHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEE
Confidence            346789999999999  66        66777766 47999999            578999999999887889999999


Q ss_pred             cc-cccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         115 EW-MGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       115 ~~-~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .. +++++.+..++..+|..+.++|+|||+|++..
T Consensus       117 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          117 MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             CTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             cCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            87 87887666788899999999999999999974

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.50  E-value=6.4e-14  Score=121.58  Aligned_cols=103  Identities=17%  Similarity=0.181  Sum_probs=83.8

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEE
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVI   96 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~   96 (252)
                      ..+...+.......++.+|||||||+|  .+        +..++..+ ..+++|+|+                 .++.++
T Consensus        23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G--~~--------~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~   92 (276)
T 3mgg_A           23 ETLEKLLHHDTVYPPGAKVLEAGCGIG--AQ--------TVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFL   92 (276)
T ss_dssp             CHHHHHHHTTCCCCTTCEEEETTCTTS--HH--------HHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHhhcccCCCCCeEEEecCCCC--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence            345555655566788999999999999  66        56666653 368999999                 368999


Q ss_pred             EccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          97 QNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        97 ~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+|+..++++ ++||+|++..+++++   +++..++..+.++|+|||++++..+.
T Consensus        93 ~~d~~~~~~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (276)
T 3mgg_A           93 QANIFSLPFEDSSFDHIFVCFVLEHL---QSPEEALKSLKKVLKPGGTITVIEGD  144 (276)
T ss_dssp             ECCGGGCCSCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EcccccCCCCCCCeeEEEEechhhhc---CCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            9999998876 899999998887777   56779999999999999999997643

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.50  E-value=6e-14  Score=120.88  Aligned_cols=90  Identities=19%  Similarity=0.201  Sum_probs=75.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC-C
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP-E  107 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~-~  107 (252)
                      ...++.+|||||||+|  .+        +..++..+ .+++|+|+                 .++.++++|+..++++ +
T Consensus        34 ~~~~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~  102 (260)
T 1vl5_A           34 ALKGNEEVLDVATGGG--HV--------ANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE  102 (260)
T ss_dssp             TCCSCCEEEEETCTTC--HH--------HHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred             CCCCCCEEEEEeCCCC--HH--------HHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence            3567899999999999  66        66777765 48999998                 3589999999999877 8


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +||+|++..+++++   +++..+|..+.++|+|||+|++...
T Consensus       103 ~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A          103 RFHIVTCRIAAHHF---PNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             CEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CEEEEEEhhhhHhc---CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            99999998887777   5778999999999999999998754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.50  E-value=1.2e-13  Score=119.47  Aligned_cols=101  Identities=12%  Similarity=0.088  Sum_probs=81.1

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQN   98 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~   98 (252)
                      +...+.......++.+|||+|||+|  .+        +..+++....+|+|+|+                  .++.++.+
T Consensus        49 ~~~~l~~~~~~~~~~~vLDiGcG~G--~~--------~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  118 (273)
T 3bus_A           49 LTDEMIALLDVRSGDRVLDVGCGIG--KP--------AVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYA  118 (273)
T ss_dssp             HHHHHHHHSCCCTTCEEEEESCTTS--HH--------HHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCC--HH--------HHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC
Confidence            3344444456678899999999999  55        55666543368999999                  25999999


Q ss_pred             cccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          99 KIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        99 d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+.+++++ ++||+|++..+++++   ++...+|..+.++|+|||++++....
T Consensus       119 d~~~~~~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          119 DAMDLPFEDASFDAVWALESLHHM---PDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             CTTSCCSCTTCEEEEEEESCTTTS---SCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             ccccCCCCCCCccEEEEechhhhC---CCHHHHHHHHHHHcCCCeEEEEEEee
Confidence            99998877 789999998776666   66789999999999999999988754

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.50  E-value=1e-13  Score=118.45  Aligned_cols=100  Identities=18%  Similarity=0.226  Sum_probs=80.8

Q ss_pred             HHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEcccccc
Q psy9773          39 AAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENV  103 (252)
Q Consensus        39 ~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~  103 (252)
                      ..+.......++.+|||||||+|  .+        +..++..+..+++++|+               .++.++++|+..+
T Consensus        83 ~~~l~~l~~~~~~~vLDiG~G~G--~~--------~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~  152 (254)
T 1xtp_A           83 RNFIASLPGHGTSRALDCGAGIG--RI--------TKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA  152 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTT--HH--------HHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC
T ss_pred             HHHHHhhcccCCCEEEEECCCcC--HH--------HHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHC
Confidence            33444445567899999999999  66        66666655567999998               3689999999998


Q ss_pred             CCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         104 ELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       104 ~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +++ ++||+|++..+++++.. .++..+|..+.++|+|||+|++..+
T Consensus       153 ~~~~~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          153 TLPPNTYDLIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             CCCSSCEEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCeEEEEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEec
Confidence            776 78999999888777643 4688999999999999999999875

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.49  E-value=3.7e-14  Score=120.35  Aligned_cols=89  Identities=16%  Similarity=0.119  Sum_probs=76.3

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------CceEEEEccccccCCC-CceeE
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LILEVIQNKIENVELP-EKVDI  111 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~i~~~~~d~~~~~~~-~~fDl  111 (252)
                      ..++.+|||+|||+|  .+        +..++..+ .+++|+|+              .++.++++|+..++++ ++||+
T Consensus        51 ~~~~~~vLDiG~G~G--~~--------~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~  119 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDG--YG--------TYKLSRTG-YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEA  119 (242)
T ss_dssp             SCTTCEEEEETCTTS--HH--------HHHHHHTT-CEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEE
T ss_pred             cCCCCeEEEEcCCCC--HH--------HHHHHHcC-CeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccE
Confidence            457889999999999  66        66777776 47999999              4789999999999876 89999


Q ss_pred             EEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |++..+++++   .++..++..+.++|+|||++++...
T Consensus       120 v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          120 IMAINSLEWT---EEPLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             EEEESCTTSS---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcChHhhc---cCHHHHHHHHHHHhCCCeEEEEEEc
Confidence            9998776665   6778999999999999999999874

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.49  E-value=9.3e-14  Score=117.74  Aligned_cols=92  Identities=21%  Similarity=0.251  Sum_probs=76.9

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCcee
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKVD  110 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fD  110 (252)
                      ..++.+|||+|||+|  .+        +..++..  .+++|+|+                .++.++++|+..++.+++||
T Consensus        31 ~~~~~~vLdiG~G~G--~~--------~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD   98 (243)
T 3d2l_A           31 VEPGKRIADIGCGTG--TA--------TLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVD   98 (243)
T ss_dssp             SCTTCEEEEESCTTC--HH--------HHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEE
T ss_pred             cCCCCeEEEecCCCC--HH--------HHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcC
Confidence            356789999999999  66        5566655  57999999                36899999999987778999


Q ss_pred             EEEecc-cccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         111 IIVSEW-MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       111 lIv~~~-~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|++.. +++++....++..++..+.++|+|||++++..+.
T Consensus        99 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  139 (243)
T 3d2l_A           99 AITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS  139 (243)
T ss_dssp             EEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence            999975 6777767778899999999999999999986543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.49  E-value=3.4e-14  Score=118.54  Aligned_cols=93  Identities=18%  Similarity=0.167  Sum_probs=78.0

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCCCCceeEEEe
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVELPEKVDIIVS  114 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~~~fDlIv~  114 (252)
                      ...++.+|||+|||+|  .+        +..++..+ .+++|+|+           .++.++.+|+..++..++||+|++
T Consensus        40 ~~~~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~  108 (211)
T 3e23_A           40 ELPAGAKILELGCGAG--YQ--------AEAMLAAG-FDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWA  108 (211)
T ss_dssp             TSCTTCEEEESSCTTS--HH--------HHHHHHTT-CEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEE
T ss_pred             hcCCCCcEEEECCCCC--HH--------HHHHHHcC-CeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEe
Confidence            4567899999999999  66        66777766 47999999           267899999999885589999999


Q ss_pred             cccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         115 EWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       115 ~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..+++++. ..++..+|..+.++|+|||++++..+.
T Consensus       109 ~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          109 HACLLHVP-RDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             CSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCchhhcC-HHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            88877764 337889999999999999999998653

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.49  E-value=3.1e-14  Score=118.18  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=81.9

Q ss_pred             HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccc
Q psy9773          36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKI  100 (252)
Q Consensus        36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~  100 (252)
                      .+...+..  ...++.+|||+|||+|  .+        +..++..+..+++|+|+               .++.++++|+
T Consensus        31 ~~~~~l~~--~~~~~~~vLdiGcG~G--~~--------~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~   98 (215)
T 2pxx_A           31 SFRALLEP--ELRPEDRILVLGCGNS--AL--------SYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV   98 (215)
T ss_dssp             HHHHHHGG--GCCTTCCEEEETCTTC--SH--------HHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT
T ss_pred             HHHHHHHH--hcCCCCeEEEECCCCc--HH--------HHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch
Confidence            35555543  3467889999999999  65        66677766558999999               3689999999


Q ss_pred             cccCCC-CceeEEEecccccccC------------ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         101 ENVELP-EKVDIIVSEWMGFYLL------------HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       101 ~~~~~~-~~fDlIv~~~~~~~l~------------~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..++++ ++||+|++..+++++.            +..++..++..+.++|+|||++++..+.
T Consensus        99 ~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A           99 RKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             TSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             hcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            998766 7899999977765553            2346789999999999999999998764

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.49  E-value=3e-13  Score=115.90  Aligned_cols=100  Identities=18%  Similarity=0.168  Sum_probs=80.1

Q ss_pred             HHHHHHHHHh-CCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEE
Q psy9773          34 NEAYRAAICD-NPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVI   96 (252)
Q Consensus        34 ~~~~~~~l~~-~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~   96 (252)
                      ...+...+.. .....++.+|||+|||+|  .+        +..++..+ .+++|+|+                .++.++
T Consensus        23 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G--~~--------~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~   91 (263)
T 2yqz_A           23 AGQIATAMASAVHPKGEEPVFLELGVGTG--RI--------ALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQVV   91 (263)
T ss_dssp             HHHHHHHHHHHCCCSSSCCEEEEETCTTS--TT--------HHHHHTTT-CEEEEEESCHHHHHHHHHHTTTSCTTEEEE
T ss_pred             HHHHHHHHHHhhcCCCCCCEEEEeCCcCC--HH--------HHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEE
Confidence            3344444432 345677899999999999  55        56666665 57999999                368999


Q ss_pred             EccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773          97 QNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus        97 ~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      ++|+..++++ ++||+|++..+++++   +++..++..+.++|+|||++++.
T Consensus        92 ~~d~~~~~~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A           92 QADARAIPLPDESVHGVIVVHLWHLV---PDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             ESCTTSCCSCTTCEEEEEEESCGGGC---TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EcccccCCCCCCCeeEEEECCchhhc---CCHHHHHHHHHHHCCCCcEEEEE
Confidence            9999988876 789999998887776   57789999999999999999987

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.48  E-value=2.1e-13  Score=116.61  Aligned_cols=94  Identities=18%  Similarity=0.205  Sum_probs=76.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCce
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      ...++.+|||+|||+|  .+        +..++..| .+++|+|+                .++.++++|+.+++.+++|
T Consensus        38 ~~~~~~~vLDlGcG~G--~~--------~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  106 (252)
T 1wzn_A           38 AKREVRRVLDLACGTG--IP--------TLELAERG-YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF  106 (252)
T ss_dssp             CSSCCCEEEEETCTTC--HH--------HHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred             cccCCCEEEEeCCCCC--HH--------HHHHHHCC-CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCc
Confidence            3456789999999999  66        66677766 47999999                2589999999998877889


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|++.....+..+..++..++..+.++|+|||++++..+.
T Consensus       107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            99998544334445567899999999999999999987654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.48  E-value=1.5e-13  Score=117.82  Aligned_cols=102  Identities=20%  Similarity=0.174  Sum_probs=82.5

Q ss_pred             HHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccc
Q psy9773          38 RAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIEN  102 (252)
Q Consensus        38 ~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~  102 (252)
                      ...+.......++.+|||+|||+|  .+        +..++.....+|+|+|+               .++.++++|+..
T Consensus        44 ~~~~~~~~~~~~~~~vLdiG~G~G--~~--------~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~  113 (266)
T 3ujc_A           44 TKKILSDIELNENSKVLDIGSGLG--GG--------CMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILT  113 (266)
T ss_dssp             HHHHTTTCCCCTTCEEEEETCTTS--HH--------HHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCC--HH--------HHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc
Confidence            344555556778899999999999  65        55666642357999999               378999999999


Q ss_pred             cCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         103 VELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       103 ~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++++ ++||+|++..+++++. ..++..+|..+.++|+|||++++..+.
T Consensus       114 ~~~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          114 KEFPENNFDLIYSRDAILALS-LENKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             CCCCTTCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCCCCcEEEEeHHHHHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            8876 8999999988766653 368899999999999999999998764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.48  E-value=4e-13  Score=119.27  Aligned_cols=96  Identities=13%  Similarity=0.086  Sum_probs=79.3

Q ss_pred             HHHhCCC-CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------------CceEEEEcc
Q psy9773          40 AICDNPN-IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------------LILEVIQNK   99 (252)
Q Consensus        40 ~l~~~~~-~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------------~~i~~~~~d   99 (252)
                      .+..... ..++.+|||+|||+|  .+        +..+++. + .+|+|+|+                  .++.++++|
T Consensus       107 ~l~~~l~~~~~~~~vLDiGcG~G--~~--------~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  175 (312)
T 3vc1_A          107 FLMDHLGQAGPDDTLVDAGCGRG--GS--------MVMAHRRFG-SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN  175 (312)
T ss_dssp             HHHTTSCCCCTTCEEEEESCTTS--HH--------HHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             HHHHHhccCCCCCEEEEecCCCC--HH--------HHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence            3444444 678899999999999  66        6666665 5 57999999                  269999999


Q ss_pred             ccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         100 IENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.+++++ ++||+|++..+++++    ++..+|..+.++|+|||+|++....
T Consensus       176 ~~~~~~~~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~~~~~~  223 (312)
T 3vc1_A          176 MLDTPFDKGAVTASWNNESTMYV----DLHDLFSEHSRFLKVGGRYVTITGC  223 (312)
T ss_dssp             TTSCCCCTTCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hhcCCCCCCCEeEEEECCchhhC----CHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            9998876 899999998887776    3889999999999999999988754

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.48  E-value=2.4e-13  Score=114.03  Aligned_cols=92  Identities=17%  Similarity=0.120  Sum_probs=74.3

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------C----------ceEEEEccccccC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------L----------ILEVIQNKIENVE  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------~----------~i~~~~~d~~~~~  104 (252)
                      .++.+|||+|||+|  .+        +..++..+. .+++|+|+            .          ++.++++|+...+
T Consensus        28 ~~~~~vLDiGcG~G--~~--------~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (219)
T 3jwg_A           28 VNAKKVIDLGCGEG--NL--------LSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD   97 (219)
T ss_dssp             TTCCEEEEETCTTC--HH--------HHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC
T ss_pred             cCCCEEEEecCCCC--HH--------HHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc
Confidence            56789999999999  66        666666544 68999999            1          7999999997776


Q ss_pred             CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+ ++||+|++..+++++ ..+++..++..+.++|+|||+++.....
T Consensus        98 ~~~~~fD~V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~~~  143 (219)
T 3jwg_A           98 KRFSGYDAATVIEVIEHL-DENRLQAFEKVLFEFTRPQTVIVSTPNK  143 (219)
T ss_dssp             GGGTTCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred             cccCCCCEEEEHHHHHhC-CHHHHHHHHHHHHHhhCCCEEEEEccch
Confidence            54 789999998888877 3335689999999999999977766543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.47  E-value=1.6e-13  Score=119.78  Aligned_cols=94  Identities=17%  Similarity=0.146  Sum_probs=77.7

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCC-C-
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVEL-P-  106 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~-~-  106 (252)
                      ..++.+|||+|||+|  .+        +..++..+..+++|+|+                  .++.++++|+...++ + 
T Consensus        62 ~~~~~~vLDiGcG~G--~~--------~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  131 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKG--GD--------LLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG  131 (298)
T ss_dssp             CCTTCEEEEETCTTT--TT--------HHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCS
T ss_pred             CCCCCeEEEECCCCC--HH--------HHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCC
Confidence            467899999999999  44        45566666568999999                  258999999998876 3 


Q ss_pred             CceeEEEeccccccc-CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYL-LHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l-~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++||+|++..+++++ .+..++..+|..+.++|+|||+|++..+.
T Consensus       132 ~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          132 KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             SCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            789999998776653 56678999999999999999999988754

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.47  E-value=4.4e-13  Score=118.22  Aligned_cols=99  Identities=21%  Similarity=0.108  Sum_probs=81.3

Q ss_pred             HHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------------CceEEEEcc
Q psy9773          39 AAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------------LILEVIQNK   99 (252)
Q Consensus        39 ~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------------~~i~~~~~d   99 (252)
                      ..+.......++.+|||||||+|  .+        +..+++. | .+|+|+|+                  .++.++.+|
T Consensus        62 ~~~~~~~~~~~~~~vLDiGcG~G--~~--------~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (302)
T 3hem_A           62 KLALDKLNLEPGMTLLDIGCGWG--ST--------MRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG  130 (302)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTS--HH--------HHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECC
T ss_pred             HHHHHHcCCCCcCEEEEeeccCc--HH--------HHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC
Confidence            34444456788899999999999  66        6666665 6 67999999                  269999999


Q ss_pred             ccccCCCCceeEEEecccccccCCh------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         100 IENVELPEKVDIIVSEWMGFYLLHE------SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~~~~~~fDlIv~~~~~~~l~~~------~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.++  +++||+|++..++++++..      ..+..++..+.++|+|||++++....
T Consensus       131 ~~~~--~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          131 WEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             GGGC--CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             HHHc--CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            9887  6889999998888887543      56789999999999999999997754

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.46  E-value=4.4e-13  Score=117.47  Aligned_cols=93  Identities=15%  Similarity=0.134  Sum_probs=78.4

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC----------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~----------------~~i~~~~~d~~~~~~~  106 (252)
                      ....++.+|||+|||+|  .+        +..++.. + ..+|+|+|+                .++.++++|+.+++++
T Consensus        18 ~~~~~~~~vLDiGcG~G--~~--------~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~   87 (284)
T 3gu3_A           18 WKITKPVHIVDYGCGYG--YL--------GLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN   87 (284)
T ss_dssp             SCCCSCCEEEEETCTTT--HH--------HHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS
T ss_pred             hccCCCCeEEEecCCCC--HH--------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC
Confidence            45678899999999999  66        6666664 2 258999999                2789999999998877


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++||+|++..+++++   .++..++..+.++|+|||++++..+.
T Consensus        88 ~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           88 DKYDIAICHAFLLHM---TTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             SCEEEEEEESCGGGC---SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCeeEEEECChhhcC---CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            899999998887766   67789999999999999999988765

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.46  E-value=1e-13  Score=116.11  Aligned_cols=89  Identities=9%  Similarity=-0.036  Sum_probs=72.1

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------C-----------------ceEEEE
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------L-----------------ILEVIQ   97 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~-----------------~i~~~~   97 (252)
                      ..++.+|||+|||+|  ..        +..+++.|. +|+|+|+            .                 ++++++
T Consensus        20 ~~~~~~vLD~GCG~G--~~--------~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~   88 (203)
T 1pjz_A           20 VVPGARVLVPLCGKS--QD--------MSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   88 (203)
T ss_dssp             CCTTCEEEETTTCCS--HH--------HHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             cCCCCEEEEeCCCCc--Hh--------HHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence            467889999999999  65        667777774 7999998            1                 478999


Q ss_pred             ccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773          98 NKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus        98 ~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      +|+.+++++  ++||+|++..++++++ ..+...++..++++|+|||++++.
T Consensus        89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           89 GDFFALTARDIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             ECCSSSTHHHHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             CccccCCcccCCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEE
Confidence            999998765  6899999977777663 446778999999999999984443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.46  E-value=2.3e-13  Score=119.35  Aligned_cols=91  Identities=19%  Similarity=0.094  Sum_probs=76.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------------CceEEEEccccccCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------------~~i~~~~~d~~~~~~~  106 (252)
                      ...++.+|||+|||+|  .+        +..+++. + .+++|+|+                  .++.++++|+..++++
T Consensus        79 ~~~~~~~vLDiGcG~G--~~--------~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  147 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYG--GA--------ARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE  147 (297)
T ss_dssp             CCCTTCEEEEETCTTS--HH--------HHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC
T ss_pred             CCCCCCEEEEeCCCCC--HH--------HHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCC
Confidence            5678899999999999  55        5555554 5 47999999                  3689999999999876


Q ss_pred             -CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 -EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 -~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       ++||+|++..+++++   +++..+|..+.++|+|||+|++..+.
T Consensus       148 ~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          148 DNSYDFIWSQDAFLHS---PDKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             TTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCEeEEEecchhhhc---CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence             789999998887777   55789999999999999999998764

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.45  E-value=2.5e-13  Score=115.94  Aligned_cols=90  Identities=19%  Similarity=0.247  Sum_probs=77.2

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC-C
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP-E  107 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~-~  107 (252)
                      ...++.+|||+|||+|  .+        +..++..+ .+++|+|+                 .++.++++|+..++++ +
T Consensus        18 ~~~~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~   86 (239)
T 1xxl_A           18 ECRAEHRVLDIGAGAG--HT--------ALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   86 (239)
T ss_dssp             TCCTTCEEEEESCTTS--HH--------HHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             CcCCCCEEEEEccCcC--HH--------HHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence            4678899999999999  66        66777766 47999999                 3589999999998876 7


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +||+|++..+++++   .++..++..+.++|+|||++++...
T Consensus        87 ~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           87 SFDIITCRYAAHHF---SDVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             CEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cEEEEEECCchhhc---cCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            89999998877776   5778999999999999999998754

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.45  E-value=2.6e-13  Score=113.80  Aligned_cols=103  Identities=15%  Similarity=0.124  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEE
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQ   97 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~   97 (252)
                      ...+...+...  ..++.+|||+|||+|  .+        +..++..++ +++|+|+                .++.+++
T Consensus        25 ~~~~~~~l~~~--~~~~~~vLDlG~G~G--~~--------~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~   91 (227)
T 1ve3_A           25 IETLEPLLMKY--MKKRGKVLDLACGVG--GF--------SFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIV   91 (227)
T ss_dssp             HHHHHHHHHHS--CCSCCEEEEETCTTS--HH--------HHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             HHHHHHHHHHh--cCCCCeEEEEeccCC--HH--------HHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEE
Confidence            34444555432  345889999999999  66        667777765 8999999                4689999


Q ss_pred             ccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          98 NKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        98 ~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|+..++++ ++||+|++..+++ +.+..++..++..+.++|+|||++++..+.
T Consensus        92 ~d~~~~~~~~~~~D~v~~~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A           92 GDARKLSFEDKTFDYVIFIDSIV-HFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             CCTTSCCSCTTCEEEEEEESCGG-GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CchhcCCCCCCcEEEEEEcCchH-hCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            999998766 7899999977633 335567889999999999999999988654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.45  E-value=4.3e-13  Score=113.35  Aligned_cols=91  Identities=22%  Similarity=0.229  Sum_probs=76.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCCCceeEEEec
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELPEKVDIIVSE  115 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~~~fDlIv~~  115 (252)
                      .++.+|||+|||+|  .+        +..++..+. +++|+|+            .++.++++|+..++.+++||+|+|.
T Consensus        39 ~~~~~vLdiG~G~G--~~--------~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~  107 (239)
T 3bxo_A           39 PEASSLLDVACGTG--TH--------LEHFTKEFG-DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSM  107 (239)
T ss_dssp             TTCCEEEEETCTTS--HH--------HHHHHHHHS-EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEEC
T ss_pred             CCCCeEEEecccCC--HH--------HHHHHHhCC-cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEc
Confidence            57789999999999  66        666666654 7999999            4689999999988777889999964


Q ss_pred             c-cccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         116 W-MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       116 ~-~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      . +++++.+..++..+|..+.++|+|||++++...
T Consensus       108 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A          108 FSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            3 667776767889999999999999999999864

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.45  E-value=3.3e-13  Score=113.14  Aligned_cols=91  Identities=18%  Similarity=0.065  Sum_probs=74.3

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------C----------ceEEEEccccccC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------L----------ILEVIQNKIENVE  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------~----------~i~~~~~d~~~~~  104 (252)
                      .++.+|||+|||+|  .+        +..+++.+. .+++|+|+            .          ++.++++|+...+
T Consensus        28 ~~~~~vLDiGcG~G--~~--------~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (217)
T 3jwh_A           28 SNARRVIDLGCGQG--NL--------LKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD   97 (217)
T ss_dssp             TTCCEEEEETCTTC--HH--------HHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred             cCCCEEEEeCCCCC--HH--------HHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence            56789999999999  66        666666543 58999999            1          7999999997666


Q ss_pred             CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         105 LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       105 ~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .+ ++||+|++..+++++ ..+++..++..+.++|+|||++++...
T Consensus        98 ~~~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A           98 KRFHGYDAATVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             GGGCSCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             ccCCCcCEEeeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            55 789999998888877 333668999999999999998877654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.45  E-value=2.2e-13  Score=118.37  Aligned_cols=90  Identities=12%  Similarity=-0.092  Sum_probs=73.7

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------C-----------------------c
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------L-----------------------I   92 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~-----------------------~   92 (252)
                      ..++.+|||+|||+|  ..        +..+++.|. +|+|+|+           .                       +
T Consensus        66 ~~~~~~vLD~GCG~G--~~--------~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (252)
T 2gb4_A           66 GQSGLRVFFPLCGKA--IE--------MKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGS  134 (252)
T ss_dssp             TCCSCEEEETTCTTC--TH--------HHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             CCCCCeEEEeCCCCc--HH--------HHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCc
Confidence            357789999999999  55        667777775 7999998           2                       3


Q ss_pred             eEEEEccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773          93 LEVIQNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        93 i~~~~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ++++++|+.+++++  ++||+|++..++++++ ..+...++..+.++|+|||+|++.+
T Consensus       135 i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          135 ISLYCCSIFDLPRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             EEEEESCTTTGGGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eEEEECccccCCcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            78999999999775  7999999977777764 4467889999999999999997543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.45  E-value=4.8e-13  Score=114.55  Aligned_cols=97  Identities=11%  Similarity=-0.028  Sum_probs=78.6

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------CceEEEEccccccCCCC
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------LILEVIQNKIENVELPE  107 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------~~i~~~~~d~~~~~~~~  107 (252)
                      +.......++.+|||+|||+|  .+        +..++.. +..+++|+|+            .++.++++|+..++.++
T Consensus        25 l~~~~~~~~~~~vLdiG~G~G--~~--------~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~   94 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGPG--NS--------TELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQ   94 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTTT--HH--------HHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSS
T ss_pred             HHHhcCCCCCCEEEEecCcCC--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccC
Confidence            333345667889999999999  55        5565554 2357999999            47899999999988448


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +||+|++..+++++   .++..+|..+.++|+|||+|++..+.
T Consensus        95 ~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A           95 KADLLYANAVFQWV---PDHLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             CEEEEEEESCGGGS---TTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             CcCEEEEeCchhhC---CCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            89999998887776   67889999999999999999998753

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.45  E-value=1.8e-13  Score=113.35  Aligned_cols=89  Identities=11%  Similarity=0.071  Sum_probs=75.9

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCC-CceeEEEecc
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELP-EKVDIIVSEW  116 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~-~~fDlIv~~~  116 (252)
                      +.+|||+|||+|  .+        +..++..+. +++|+|+            .++.++++|+.+++++ ++||+|++..
T Consensus        42 ~~~vLDiGcG~G--~~--------~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  110 (203)
T 3h2b_A           42 DGVILDVGSGTG--RW--------TGHLASLGH-QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWY  110 (203)
T ss_dssp             CSCEEEETCTTC--HH--------HHHHHHTTC-CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEES
T ss_pred             CCeEEEecCCCC--HH--------HHHHHhcCC-eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehh
Confidence            789999999999  66        667777664 7999999            5799999999998876 8999999988


Q ss_pred             cccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         117 MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       117 ~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +++++. ..++..+|..+.++|+|||++++....
T Consensus       111 ~l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~  143 (203)
T 3h2b_A          111 SLIHMG-PGELPDALVALRMAVEDGGGLLMSFFS  143 (203)
T ss_dssp             SSTTCC-TTTHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             hHhcCC-HHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            877763 237899999999999999999998753

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.44  E-value=2.7e-13  Score=112.95  Aligned_cols=86  Identities=17%  Similarity=0.223  Sum_probs=72.3

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCC-CceeEEEec
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELP-EKVDIIVSE  115 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~-~~fDlIv~~  115 (252)
                      ++.+|||+|||+|  .+        +..+   +..+++|+|+            .++.++++|+..++++ ++||+|++.
T Consensus        36 ~~~~vLdiG~G~G--~~--------~~~l---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  102 (211)
T 2gs9_A           36 PGESLLEVGAGTG--YW--------LRRL---PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLF  102 (211)
T ss_dssp             CCSEEEEETCTTC--HH--------HHHC---CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEE
T ss_pred             CCCeEEEECCCCC--Hh--------HHhC---CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEc
Confidence            7889999999999  54        3333   4447999999            3789999999998876 789999998


Q ss_pred             ccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       116 ~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+++++   .++..++..+.++|+|||++++..+.
T Consensus       103 ~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A          103 TTLEFV---EDVERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             SCTTTC---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             Chhhhc---CCHHHHHHHHHHHcCCCCEEEEEecC
Confidence            776666   57889999999999999999998764

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.44  E-value=3.4e-13  Score=116.68  Aligned_cols=91  Identities=22%  Similarity=0.263  Sum_probs=76.6

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCCC-CceeEE
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVELP-EKVDII  112 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~-~~fDlI  112 (252)
                      ....++.+|||||||+|  .+        +..++..+ .+|+|+|+           .++.++++|+.+++++ ++||+|
T Consensus        30 ~~~~~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v   98 (261)
T 3ege_A           30 LNLPKGSVIADIGAGTG--GY--------SVALANQG-LFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGV   98 (261)
T ss_dssp             HCCCTTCEEEEETCTTS--HH--------HHHHHTTT-CEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEE
T ss_pred             hCCCCCCEEEEEcCccc--HH--------HHHHHhCC-CEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEE
Confidence            34578899999999999  66        66777655 58999999           3789999999998876 899999


Q ss_pred             EecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++..+++++   .++..++..+.++|+ ||++++....
T Consensus        99 ~~~~~l~~~---~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           99 ISILAIHHF---SHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             EEESCGGGC---SSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             EEcchHhhc---cCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence            998887777   778899999999999 9977766543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.44  E-value=2.7e-13  Score=112.49  Aligned_cols=93  Identities=22%  Similarity=0.241  Sum_probs=75.0

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCC-Cce
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELP-EKV  109 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~-~~f  109 (252)
                      ..++.+|||+|||+|...+         ..++..+ .+++|+|+                .++.++++|+..++++ ++|
T Consensus        21 ~~~~~~vLDiGcG~G~~~~---------~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~f   90 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPL---------SIFVEDG-YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESM   90 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTH---------HHHHHTT-CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCE
T ss_pred             cCCCCEEEEECCCCCHHHH---------HHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCce
Confidence            4567899999999994322         2334444 47999999                3588999999998876 789


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|++..+++++. ..++..++..+.++|+|||++++....
T Consensus        91 D~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           91 SFVYSYGTIFHMR-KNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             EEEEECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEEcChHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9999987777663 467899999999999999999998765

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.43  E-value=6.9e-13  Score=108.83  Aligned_cols=90  Identities=20%  Similarity=0.201  Sum_probs=75.0

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCCCce
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      ..++.+|||+|||+|  .+        +..++..+ .+++|+|+                 .++.++++|+..++++++|
T Consensus        30 ~~~~~~vLdiG~G~G--~~--------~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~   98 (199)
T 2xvm_A           30 VVKPGKTLDLGCGNG--RN--------SLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY   98 (199)
T ss_dssp             TSCSCEEEEETCTTS--HH--------HHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred             ccCCCeEEEEcCCCC--HH--------HHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence            456789999999999  66        66666665 47999999                 2789999999988777889


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      |+|++..+++++. ..++..++..+.++|+|||++++..
T Consensus        99 D~v~~~~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           99 DFILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EEEEEESCGGGSC-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            9999988877763 3478899999999999999987754

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.43  E-value=9.1e-13  Score=115.02  Aligned_cols=100  Identities=23%  Similarity=0.152  Sum_probs=80.1

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHh-hcCCCcEEEeeC------------------CceEEEE
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCT-KVHPLDHYAPQY------------------LILEVIQ   97 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a-~~g~~~v~gvD~------------------~~i~~~~   97 (252)
                      ....+.......++.+|||||||+|  .+        +..++ ..++ +|+|+|+                  .++.++.
T Consensus        52 ~~~~~~~~~~~~~~~~vLDiGcG~G--~~--------~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~  120 (287)
T 1kpg_A           52 KIDLALGKLGLQPGMTLLDVGCGWG--AT--------MMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLL  120 (287)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTS--HH--------HHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE
T ss_pred             HHHHHHHHcCCCCcCEEEEECCccc--HH--------HHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence            3444555556778899999999999  55        55555 4554 8999999                  2789999


Q ss_pred             ccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          98 NKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        98 ~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|+.+++  ++||+|++..+++++.. .++..+|..+.++|+|||++++....
T Consensus       121 ~d~~~~~--~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          121 AGWEQFD--EPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             SCGGGCC--CCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             CChhhCC--CCeeEEEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            9998776  78999999888777643 46889999999999999999997754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.43  E-value=1.9e-13  Score=117.32  Aligned_cols=94  Identities=14%  Similarity=0.192  Sum_probs=75.2

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------Cc-------------------
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LI-------------------   92 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~-------------------   92 (252)
                      ...++.+|||+|||+|  .+        +..++..++.+|+|+|+              ..                   
T Consensus        53 ~~~~~~~vLDlGcG~G--~~--------~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (265)
T 2i62_A           53 GAVKGELLIDIGSGPT--IY--------QLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNR  122 (265)
T ss_dssp             SSCCEEEEEEESCTTC--CG--------GGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTC
T ss_pred             cccCCCEEEEECCCcc--HH--------HHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccc
Confidence            4567789999999999  55        56666666557999999              11                   


Q ss_pred             -------------e-EEEEccccccCC--C---CceeEEEecccccccC-ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          93 -------------L-EVIQNKIENVEL--P---EKVDIIVSEWMGFYLL-HESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        93 -------------i-~~~~~d~~~~~~--~---~~fDlIv~~~~~~~l~-~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                                   + .++++|+.....  +   ++||+|++..+++++. +..++..+|..+.++|+|||+|++...
T Consensus       123 ~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          123 MKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             SCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence                         7 899999988643  3   6899999988776443 446889999999999999999998763

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.43  E-value=2.6e-13  Score=113.54  Aligned_cols=92  Identities=26%  Similarity=0.303  Sum_probs=76.4

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY-----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~-----------------~~i~~~~~d~~~~~~~  106 (252)
                      ...++.+|||+|||+|  .+        +..++..+  ..+++|+|+                 .++.++++|+..++++
T Consensus        34 ~~~~~~~vLDiG~G~G--~~--------~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~  103 (219)
T 3dh0_A           34 GLKEGMTVLDVGTGAG--FY--------LPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP  103 (219)
T ss_dssp             TCCTTCEEEESSCTTC--TT--------HHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC
T ss_pred             CCCCCCEEEEEecCCC--HH--------HHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCC
Confidence            4577889999999999  55        55555543  358999999                 3699999999998876


Q ss_pred             -CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 -EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 -~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       ++||+|++..+++++   .++..++..+.++|+|||++++....
T Consensus       104 ~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~  145 (219)
T 3dh0_A          104 DNTVDFIFMAFTFHEL---SEPLKFLEELKRVAKPFAYLAIIDWK  145 (219)
T ss_dssp             SSCEEEEEEESCGGGC---SSHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCeeEEEeehhhhhc---CCHHHHHHHHHHHhCCCeEEEEEEec
Confidence             789999998887776   57789999999999999999997643

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=99.43  E-value=7.1e-14  Score=136.00  Aligned_cols=139  Identities=20%  Similarity=0.240  Sum_probs=110.7

Q ss_pred             HHHHHHhccHHHHHHHHHHHHhCCCC-----CCCCEEEEEcCCcCchhhhhccCccchHHHhhc----C----------C
Q psy9773          22 EVHKLMLDDTVRNEAYRAAICDNPNI-----FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV----H----------P   82 (252)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~l~~~~~~-----~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~----g----------~   82 (252)
                      ..+..+.+|.+++..|.++|..+...     ..+..|||||||+|  .|        +.++..+    +          +
T Consensus       377 ~tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtG--pL--------s~~al~A~~~a~~~~~~~~~~~~  446 (745)
T 3ua3_A          377 GVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRG--PI--------GTKILKSEREYNNTFRQGQESLK  446 (745)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTC--HH--------HHHHHHHHHHHHHHHSTTSCCCE
T ss_pred             HHHHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCC--HH--------HHHHHHHHHHhCccccccccccc
Confidence            45566889999999999999875221     12468999999999  77        5432221    1          2


Q ss_pred             CcEEEeeC-----------------CceEEEEccccccCC------CCceeEEEecccccccCChhhHHHHHHHHhcccc
Q psy9773          83 LDHYAPQY-----------------LILEVIQNKIENVEL------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLK  139 (252)
Q Consensus        83 ~~v~gvD~-----------------~~i~~~~~d~~~~~~------~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~Lk  139 (252)
                      .+|+|||.                 .+|+++++|++++..      ++++|+||+.++++++.++. ...+|..+.++|+
T Consensus       447 ~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL-~pe~Ld~v~r~Lk  525 (745)
T 3ua3_A          447 VKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNEL-SPECLDGVTGFLK  525 (745)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGS-HHHHHHTTGGGSC
T ss_pred             cEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhc-cHHHHHHHHHhCC
Confidence            38999999                 579999999999987      68999999999988876664 4557788889999


Q ss_pred             CCeEEEeeccccccCCCCChhHHHHhhhhhCCccc
Q psy9773         140 PEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEK  174 (252)
Q Consensus       140 pgG~lv~~~~~~~~~~~~~~~~~~~w~~~~g~~~~  174 (252)
                      |||+++++..+.|.+++....   +|..+++++++
T Consensus       526 p~Gi~iP~~~t~ylaPi~~~~---l~~~v~~~~~~  557 (745)
T 3ua3_A          526 PTTISIPQKYTSYVKPIMSTH---IHQTIKAQSIP  557 (745)
T ss_dssp             TTCEEESCEEEEEEEEEECHH---HHHHHHTCCCC
T ss_pred             CCcEEECCccEEEEEEecCHH---HHHHHHhhccc
Confidence            999999999999999998876   57777777654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.43  E-value=4e-13  Score=112.46  Aligned_cols=91  Identities=21%  Similarity=0.215  Sum_probs=74.9

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------C-ceEEEEccccccCCCCceeEEEe
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------L-ILEVIQNKIENVELPEKVDIIVS  114 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~-~i~~~~~d~~~~~~~~~fDlIv~  114 (252)
                      .++.+|||+|||+|  .+        +..++..+ .+++|+|+            . ++.++++|+..++.+++||+|++
T Consensus        44 ~~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  112 (220)
T 3hnr_A           44 KSFGNVLEFGVGTG--NL--------TNKLLLAG-RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS  112 (220)
T ss_dssp             TCCSEEEEECCTTS--HH--------HHHHHHTT-CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred             cCCCeEEEeCCCCC--HH--------HHHHHhCC-CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence            47889999999999  66        66666665 57999999            2 79999999999877789999999


Q ss_pred             cccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         115 EWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       115 ~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..+++++... ....+|..+.++|+|||++++..+.
T Consensus       113 ~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~  147 (220)
T 3hnr_A          113 TYAFHHLTDD-EKNVAIAKYSQLLNKGGKIVFADTI  147 (220)
T ss_dssp             ESCGGGSCHH-HHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             CcchhcCChH-HHHHHHHHHHHhcCCCCEEEEEecc
Confidence            8887777222 2344999999999999999998654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.43  E-value=6e-13  Score=111.83  Aligned_cols=93  Identities=14%  Similarity=0.108  Sum_probs=78.3

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------------CceEEEEccccccC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------------LILEVIQNKIENVE  104 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------------~~i~~~~~d~~~~~  104 (252)
                      ..++.+|||+|||+|  .+        +..++..+ .+++|+|+                      .++.++++|+..++
T Consensus        28 ~~~~~~vLdiG~G~G--~~--------~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   96 (235)
T 3sm3_A           28 LQEDDEILDIGCGSG--KI--------SLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS   96 (235)
T ss_dssp             CCTTCEEEEETCTTS--HH--------HHHHHHTT-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC
T ss_pred             CCCCCeEEEECCCCC--HH--------HHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC
Confidence            457889999999999  66        66677666 47999999                      15799999999988


Q ss_pred             CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++ ++||+|++..+++++.+......++..+.++|+|||++++....
T Consensus        97 ~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (235)
T 3sm3_A           97 FHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG  143 (235)
T ss_dssp             SCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             CCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence            76 88999999888888866666669999999999999999998754

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=3.1e-13  Score=117.82  Aligned_cols=91  Identities=20%  Similarity=0.187  Sum_probs=76.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCCCceeEEE
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELPEKVDIIV  113 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~~~fDlIv  113 (252)
                      ...++.+|||||||+|  .+        +..++..+ .+|+|+|+            .++.++++|+..++++++||+|+
T Consensus        54 ~~~~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~  122 (279)
T 3ccf_A           54 NPQPGEFILDLGCGTG--QL--------TEKIAQSG-AEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVF  122 (279)
T ss_dssp             CCCTTCEEEEETCTTS--HH--------HHHHHHTT-CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEE
T ss_pred             CCCCCCEEEEecCCCC--HH--------HHHHHhCC-CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEE
Confidence            3567889999999999  66        56666654 58999999            47899999999988778999999


Q ss_pred             ecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       114 ~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +..+++++   .++..+|..+.++|+|||+|++..+.
T Consensus       123 ~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~~~~~  156 (279)
T 3ccf_A          123 SNAMLHWV---KEPEAAIASIHQALKSGGRFVAEFGG  156 (279)
T ss_dssp             EESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EcchhhhC---cCHHHHHHHHHHhcCCCcEEEEEecC
Confidence            98887776   57889999999999999999987653

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.43  E-value=4e-13  Score=114.56  Aligned_cols=92  Identities=13%  Similarity=0.137  Sum_probs=75.1

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC-Cce
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP-EKV  109 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~-~~f  109 (252)
                      .++.+|||||||+|  .+        +..++..+..+++|+|+                 .++.++++|+..++++ ++|
T Consensus        78 ~~~~~vLDiGcG~G--~~--------~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  147 (241)
T 2ex4_A           78 TGTSCALDCGAGIG--RI--------TKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSY  147 (241)
T ss_dssp             CCCSEEEEETCTTT--HH--------HHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCE
T ss_pred             CCCCEEEEECCCCC--HH--------HHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCE
Confidence            36889999999999  66        66666665568999999                 1488999999988776 689


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|++..+++++.. +.+..+|..+.++|+|||+|++..+.
T Consensus       148 D~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          148 DVIWIQWVIGHLTD-QHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             EEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            99999888777632 24668999999999999999997653

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.42  E-value=4.4e-13  Score=118.61  Aligned_cols=102  Identities=15%  Similarity=0.118  Sum_probs=80.6

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHH--hhcCCCcEEEeeC------------------CceEEE
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFC--TKVHPLDHYAPQY------------------LILEVI   96 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~--a~~g~~~v~gvD~------------------~~i~~~   96 (252)
                      +...+.  ....++.+|||||||+|  .+        +..+  +..+..+|+|+|+                  .+++++
T Consensus       108 ~~~~l~--~~l~~~~~vLDiGcG~G--~~--------~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~  175 (305)
T 3ocj_A          108 FRRALQ--RHLRPGCVVASVPCGWM--SE--------LLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLH  175 (305)
T ss_dssp             HHHHHH--HHCCTTCEEEETTCTTC--HH--------HHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEE
T ss_pred             HHHHHH--hhCCCCCEEEEecCCCC--HH--------HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence            444442  34577899999999999  54        4444  2333458999999                  249999


Q ss_pred             EccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          97 QNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        97 ~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++|+.+++++++||+|++..+.++++.......++..+.++|+|||+|++....
T Consensus       176 ~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          176 RQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             ECCGGGCCCCSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ECchhcCCccCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            999999987789999999888888866666667999999999999999997743

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.42  E-value=1.2e-12  Score=114.33  Aligned_cols=88  Identities=19%  Similarity=0.114  Sum_probs=74.4

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC-CC-C
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE-LP-E  107 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~-~~-~  107 (252)
                      ..+.+|||||||+|  .+        +..++..+ .+|+|+|+                  .++.++++|+.+++ ++ +
T Consensus        67 ~~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  135 (285)
T 4htf_A           67 PQKLRVLDAGGGEG--QT--------AIKMAERG-HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET  135 (285)
T ss_dssp             SSCCEEEEETCTTC--HH--------HHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred             CCCCEEEEeCCcch--HH--------HHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence            34689999999999  66        66677665 47999999                  36889999999987 33 8


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +||+|++..+++++   +++..+|..+.++|+|||++++...
T Consensus       136 ~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          136 PVDLILFHAVLEWV---ADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             CEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CceEEEECchhhcc---cCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            99999998887777   6678999999999999999998765

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.42  E-value=6.8e-13  Score=116.84  Aligned_cols=91  Identities=15%  Similarity=0.153  Sum_probs=73.3

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------------CceEEEEccccccCCCCc
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------------~~i~~~~~d~~~~~~~~~  108 (252)
                      .+.+|||||||+|  .+        +..++..+ .+|+|+|+                    .++.++++|+.+++++++
T Consensus        82 ~~~~vLDlGcG~G--~~--------~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  150 (299)
T 3g2m_A           82 VSGPVLELAAGMG--RL--------TFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKR  150 (299)
T ss_dssp             CCSCEEEETCTTT--TT--------HHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCC
T ss_pred             CCCcEEEEeccCC--HH--------HHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCC
Confidence            3459999999999  55        66677766 57999999                    148999999999988889


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ||+|++.....+.....+...+|..+.++|+|||+|++....
T Consensus       151 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  192 (299)
T 3g2m_A          151 FGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM  192 (299)
T ss_dssp             EEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence            999997543333334456899999999999999999998765

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.40  E-value=5.8e-13  Score=114.14  Aligned_cols=92  Identities=23%  Similarity=0.224  Sum_probs=73.2

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccC--CC-C
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVE--LP-E  107 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~--~~-~  107 (252)
                      ..+|.+|||||||+|  ..        +..+++.++.++++||+                .++.++.+|+..+.  ++ +
T Consensus        58 ~~~G~rVLdiG~G~G--~~--------~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~  127 (236)
T 3orh_A           58 SSKGGRVLEVGFGMA--IA--------ASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDG  127 (236)
T ss_dssp             TTTCEEEEEECCTTS--HH--------HHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTT
T ss_pred             ccCCCeEEEECCCcc--HH--------HHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccccccc
Confidence            367899999999999  66        66777765568999999                56788899887663  33 7


Q ss_pred             ceeEEEecccc--cccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         108 KVDIIVSEWMG--FYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       108 ~fDlIv~~~~~--~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +||.|+...+.  ..+.+..++..++..+.|+|||||+|++..
T Consensus       128 ~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          128 HFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             CCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            89999875432  344566789999999999999999998764

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.40  E-value=1.1e-12  Score=116.47  Aligned_cols=93  Identities=18%  Similarity=0.079  Sum_probs=75.0

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------C----------ceEEEEcccccc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------L----------ILEVIQNKIENV  103 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~----------~i~~~~~d~~~~  103 (252)
                      .++.+|||+|||+|  .+        +..++..+..+++|+|+              .          ++.++++|+..+
T Consensus        33 ~~~~~VLDlGcG~G--~~--------~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  102 (313)
T 3bgv_A           33 KRDITVLDLGCGKG--GD--------LLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKE  102 (313)
T ss_dssp             --CCEEEEETCTTT--TT--------HHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTS
T ss_pred             CCCCEEEEECCCCc--HH--------HHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccccc
Confidence            46789999999999  44        45555544568999999              0          688999999987


Q ss_pred             C----CC---CceeEEEeccccccc-CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         104 E----LP---EKVDIIVSEWMGFYL-LHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       104 ~----~~---~~fDlIv~~~~~~~l-~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +    ++   ++||+|+|..+++++ .+..++..+|..+.++|+|||+|++..+.
T Consensus       103 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          103 LLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             CSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             chhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            6    32   589999998888777 56678889999999999999999998764

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.39  E-value=9.8e-13  Score=111.56  Aligned_cols=90  Identities=13%  Similarity=0.019  Sum_probs=74.1

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCcee
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEKVD  110 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~fD  110 (252)
                      ++.+|||+|||+|  .+        +..++..+ .+|+|+|+                  .++.++++|+.+++..++||
T Consensus        66 ~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  134 (235)
T 3lcc_A           66 PLGRALVPGCGGG--HD--------VVAMASPE-RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFD  134 (235)
T ss_dssp             CCEEEEEETCTTC--HH--------HHHHCBTT-EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEE
T ss_pred             CCCCEEEeCCCCC--HH--------HHHHHhCC-CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCee
Confidence            4469999999999  65        56666655 47999999                  24899999999987668999


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|++..+++++. ..+...++..+.++|+|||+|++....
T Consensus       135 ~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~  173 (235)
T 3lcc_A          135 LIFDYVFFCAIE-PEMRPAWAKSMYELLKPDGELITLMYP  173 (235)
T ss_dssp             EEEEESSTTTSC-GGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEEEChhhhcCC-HHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence            999988877763 337889999999999999999986653

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.39  E-value=5.2e-13  Score=109.86  Aligned_cols=93  Identities=14%  Similarity=0.095  Sum_probs=74.4

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccC--C-CC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVE--L-PE  107 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~--~-~~  107 (252)
                      .++.+|||+|||+|  .+        +..++..++.+|+|+|+                 .+++++++|+.++.  . .+
T Consensus        43 ~~~~~vLDlgcG~G--~~--------~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  112 (189)
T 3p9n_A           43 LTGLAVLDLYAGSG--AL--------GLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTS  112 (189)
T ss_dssp             CTTCEEEEETCTTC--HH--------HHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSS
T ss_pred             CCCCEEEEeCCCcC--HH--------HHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCC
Confidence            57889999999999  66        66666677678999999                 37899999998874  2 37


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhc--cccCCeEEEeeccccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDK--FLKPEGVMYPYKCILH  152 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~--~LkpgG~lv~~~~~~~  152 (252)
                      +||+|+++...++  ...++..++..+.+  +|+|||++++......
T Consensus       113 ~fD~i~~~~p~~~--~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          113 PVDLVLADPPYNV--DSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             CCSEEEECCCTTS--CHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             CccEEEECCCCCc--chhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            8999999765222  12578889999988  9999999999876543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.39  E-value=1.3e-12  Score=114.16  Aligned_cols=90  Identities=20%  Similarity=0.209  Sum_probs=76.2

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCceeE
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKVDI  111 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fDl  111 (252)
                      .++.+|||+|||+|  .+        +..++..|. +|+|+|+                .++.++++|+..++.+++||+
T Consensus       119 ~~~~~vLD~GcG~G--~~--------~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~  187 (286)
T 3m70_A          119 ISPCKVLDLGCGQG--RN--------SLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF  187 (286)
T ss_dssp             SCSCEEEEESCTTC--HH--------HHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred             cCCCcEEEECCCCC--HH--------HHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence            37889999999999  66        667777764 7999999                278999999999877789999


Q ss_pred             EEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |++..+++++ ..+....++..+.++|+|||++++...
T Consensus       188 i~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          188 IVSTVVFMFL-NRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             EEECSSGGGS-CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEccchhhC-CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9998887776 445688999999999999999877543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.39  E-value=3.1e-12  Score=113.43  Aligned_cols=100  Identities=20%  Similarity=0.120  Sum_probs=80.0

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------------CceEEEE
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------------LILEVIQ   97 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------------~~i~~~~   97 (252)
                      ....+.......++.+|||+|||+|  .+        +..+++. ++ +|+|+|+                  .++.++.
T Consensus        78 ~~~~~~~~~~~~~~~~vLDiGcG~G--~~--------~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~  146 (318)
T 2fk8_A           78 KVDLNLDKLDLKPGMTLLDIGCGWG--TT--------MRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL  146 (318)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTS--HH--------HHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE
T ss_pred             HHHHHHHhcCCCCcCEEEEEcccch--HH--------HHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence            3344555556778899999999999  55        5566654 64 7999999                  2489999


Q ss_pred             ccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          98 NKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        98 ~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|+.+++  ++||+|++..+++++.. .++..++..+.++|+|||++++..+.
T Consensus       147 ~d~~~~~--~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          147 QGWEDFA--EPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             SCGGGCC--CCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             CChHHCC--CCcCEEEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            9998875  78999999888776633 47889999999999999999997764

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.39  E-value=3.9e-13  Score=118.28  Aligned_cols=137  Identities=14%  Similarity=0.106  Sum_probs=79.1

Q ss_pred             CccccCC-CChhhHhhhhccHHHHHHHhccHHHHHHHHHHH---HhCCC-CCCCCEEEEEcCCcCchhhhhccCccc-hH
Q psy9773           2 DMEVVKD-HDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAI---CDNPN-IFAGKTVLDVGTGTGKSILLQGHGVDH-HS   75 (252)
Q Consensus         2 ~m~~~~~-~~~~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l---~~~~~-~~~~~~VLDlGcGtG~~~ll~~~~v~~-s~   75 (252)
                      .+.+... ++.+.|...|..+.....  ........+.+.+   ..... ..++.+|||||||+|....      .+ ..
T Consensus         2 ~~~~~~~~~d~~~y~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~VLDiG~GtG~~~~------~~l~~   73 (292)
T 2aot_A            2 ASSMRSLFSDHGKYVESFRRFLNHST--EHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDL------QILSK   73 (292)
T ss_dssp             ---CCBGGGCHHHHHHHHHHHHTTBS--HHHHHHHHHHHTHHHHSSSTTTTCSEEEEEEETCTTSHHHH------HHHHH
T ss_pred             CcccccccccHHHHHHHHHHHHHhcc--HHHHHHHHHHHhchhHHhhccCCCCCCeEEEEcCCCCHHHH------HHHHH
Confidence            3333333 566677777776543211  0111112222222   11112 3567899999999993321      00 11


Q ss_pred             HHhhcCCCc--EEEeeC------------------CceE--EEEccccccC------C-CCceeEEEecccccccCChhh
Q psy9773          76 FCTKVHPLD--HYAPQY------------------LILE--VIQNKIENVE------L-PEKVDIIVSEWMGFYLLHESM  126 (252)
Q Consensus        76 ~~a~~g~~~--v~gvD~------------------~~i~--~~~~d~~~~~------~-~~~fDlIv~~~~~~~l~~~~~  126 (252)
                      ++...+...  ++|+|+                  .++.  +..+++.+++      + +++||+|++..+++++   ++
T Consensus        74 l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~d  150 (292)
T 2aot_A           74 VQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV---KD  150 (292)
T ss_dssp             HHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGC---SC
T ss_pred             HHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeec---CC
Confidence            122222233  399998                  1333  3455555443      2 3789999998887777   77


Q ss_pred             HHHHHHHHhccccCCeEEEeecc
Q psy9773         127 IDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       127 ~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +..+|.+++++|||||+|++...
T Consensus       151 ~~~~l~~~~r~LkpgG~l~i~~~  173 (292)
T 2aot_A          151 IPATLKFFHSLLGTNAKMLIIVV  173 (292)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEe
Confidence            88999999999999999998753

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.38  E-value=6.3e-13  Score=118.39  Aligned_cols=93  Identities=17%  Similarity=0.113  Sum_probs=69.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------C--------ceEEEEccc----
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------L--------ILEVIQNKI----  100 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~--------~i~~~~~d~----  100 (252)
                      .++.+|||||||+|..+.          .++..+..+|+|+|+               .        ++.+.+.|+    
T Consensus        47 ~~~~~VLDlGCG~G~~l~----------~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~  116 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLE----------KYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDT  116 (302)
T ss_dssp             CSCCEEEETTCTTTTTHH----------HHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSS
T ss_pred             CCCCeEEEEecCCcHhHH----------HHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccch
Confidence            357899999999994332          333344468999999               1        256778888    


Q ss_pred             --cccC--CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         101 --ENVE--LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       101 --~~~~--~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                        .+++  ++ ++||+|+|..++|++.+..+...+|.+++++|+|||+|++..+.
T Consensus       117 ~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          117 FVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             HHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence              3221  23 78999999888777655456789999999999999999998764

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.38  E-value=6.7e-13  Score=117.13  Aligned_cols=58  Identities=7%  Similarity=0.087  Sum_probs=47.5

Q ss_pred             ceEEEEccccccC------CCCceeEEEecccccccC---ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          92 ILEVIQNKIENVE------LPEKVDIIVSEWMGFYLL---HESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        92 ~i~~~~~d~~~~~------~~~~fDlIv~~~~~~~l~---~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++.|+++|+....      ..++||+|+|..++.+++   +...+..+|..+.++|+|||+|++...
T Consensus       155 ~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          155 NVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             TEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            5889999998654      237899999988876653   445788999999999999999999754

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.37  E-value=6.8e-13  Score=112.99  Aligned_cols=94  Identities=22%  Similarity=0.211  Sum_probs=72.8

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEcccccc--CCC-C
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENV--ELP-E  107 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~--~~~-~  107 (252)
                      ..++.+|||||||+|  .+        +..++..+..+|+|+|+                .++.++++|+.++  +++ +
T Consensus        58 ~~~~~~vLDiGcGtG--~~--------~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~  127 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMA--IA--------ASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDG  127 (236)
T ss_dssp             TTTCEEEEEECCTTS--HH--------HHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTT
T ss_pred             CCCCCeEEEEeccCC--HH--------HHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCC
Confidence            357789999999999  65        56666655558999999                4688999999988  666 7


Q ss_pred             ceeEEEe-cccc-cccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVS-EWMG-FYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~-~~~~-~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +||+|++ .+.. ....+...+..++..+.++|||||+|++....
T Consensus       128 ~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          128 HFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             ceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            8999999 4432 12223445678899999999999999987643

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.37  E-value=2e-12  Score=113.88  Aligned_cols=87  Identities=13%  Similarity=0.139  Sum_probs=72.1

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhh--cCCCcEEEeeC-------------------CceEEEEccccccCCC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK--VHPLDHYAPQY-------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~--~g~~~v~gvD~-------------------~~i~~~~~d~~~~~~~  106 (252)
                      .++.+|||||||+|  .+        +..++.  .+..+|+|+|+                   .++.++++|+.+++++
T Consensus        35 ~~~~~vLDiGcG~G--~~--------~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~  104 (299)
T 3g5t_A           35 GERKLLVDVGCGPG--TA--------TLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFL  104 (299)
T ss_dssp             SCCSEEEEETCTTT--HH--------HHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGG
T ss_pred             CCCCEEEEECCCCC--HH--------HHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcc
Confidence            57899999999999  55        556664  24578999999                   2789999999987654


Q ss_pred             -------CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         107 -------EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       107 -------~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                             ++||+|++..+++++    ++..++..+.++|+|||+|++..
T Consensus       105 ~~~~~~~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i~~  149 (299)
T 3g5t_A          105 GADSVDKQKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAIWG  149 (299)
T ss_dssp             CTTTTTSSCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccCCCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEEEe
Confidence                   589999998887776    68899999999999999998843

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.37  E-value=5.2e-13  Score=111.49  Aligned_cols=90  Identities=19%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEcccccc---CCC--Ccee
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENV---ELP--EKVD  110 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~---~~~--~~fD  110 (252)
                      ..++.+|||+|||+|  .+        +..++..+ .+++|+|+           .++.+..+|+.++   +..  .+||
T Consensus        50 ~~~~~~vLdiG~G~G--~~--------~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           50 GRQPERVLDLGCGEG--WL--------LRALADRG-IEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             HTCCSEEEEETCTTC--HH--------HHHHHTTT-CEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             cCCCCEEEEeCCCCC--HH--------HHHHHHCC-CEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence            345689999999999  66        66777666 47999999           5678899998877   333  5699


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                      +|++..+++    ..++..++..+.++|+|||+|++..+..
T Consensus       119 ~v~~~~~l~----~~~~~~~l~~~~~~L~pgG~l~~~~~~~  155 (227)
T 3e8s_A          119 LICANFALL----HQDIIELLSAMRTLLVPGGALVIQTLHP  155 (227)
T ss_dssp             EEEEESCCC----SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEEECchhh----hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence            999977655    3577899999999999999999987643

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.36  E-value=9.8e-13  Score=105.87  Aligned_cols=87  Identities=17%  Similarity=0.191  Sum_probs=72.2

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCC-CceeEEE
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELP-EKVDIIV  113 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~-~~fDlIv  113 (252)
                      ..++.+|||+|||+|  .+        +..++..+. +++|+|+            .++.++.+|   .+++ ++||+|+
T Consensus        15 ~~~~~~vLDiG~G~G--~~--------~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~   80 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNG--FY--------CKYLLEFAT-KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFIL   80 (170)
T ss_dssp             SSCCEEEEEETCTTC--TT--------HHHHHTTEE-EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEE
T ss_pred             cCCCCeEEEECCCCC--HH--------HHHHHhhcC-eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEE
Confidence            467789999999999  66        667776654 8999999            578999998   4444 7899999


Q ss_pred             ecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       114 ~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +..+++++   .++..++..+.++|+|||++++....
T Consensus        81 ~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~  114 (170)
T 3i9f_A           81 FANSFHDM---DDKQHVISEVKRILKDDGRVIIIDWR  114 (170)
T ss_dssp             EESCSTTC---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             Eccchhcc---cCHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            98876666   57889999999999999999998654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.35  E-value=1.6e-12  Score=113.86  Aligned_cols=91  Identities=18%  Similarity=0.227  Sum_probs=68.5

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC--------c---------------------------
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL--------I---------------------------   92 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~--------~---------------------------   92 (252)
                      .++.+|||||||+|.  +        +.+++..+..+|+|+|+.        .                           
T Consensus        70 ~~~~~vLDiGcG~G~--~--------~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  139 (289)
T 2g72_A           70 VSGRTLIDIGSGPTV--Y--------QLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGEC  139 (289)
T ss_dssp             SCCSEEEEETCTTCC--G--------GGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCC
T ss_pred             CCCCeEEEECCCcCh--H--------HHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccc
Confidence            477899999999994  4        444444334589999991        0                           


Q ss_pred             ------------eEEEEccccc-cCCC------CceeEEEecccccccCC-hhhHHHHHHHHhccccCCeEEEeec
Q psy9773          93 ------------LEVIQNKIEN-VELP------EKVDIIVSEWMGFYLLH-ESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        93 ------------i~~~~~d~~~-~~~~------~~fDlIv~~~~~~~l~~-~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                                  +.++++|+.. ++++      ++||+|++..+++++.. ..++..+|.++.++|||||+|++..
T Consensus       140 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          140 WQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             HHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                        3456668877 4432      56999999888777433 3688999999999999999999864

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.35  E-value=4.8e-12  Score=103.27  Aligned_cols=93  Identities=18%  Similarity=0.105  Sum_probs=70.6

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccC--C
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVE--L  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~--~  105 (252)
                      ....++.+|||+|||+|  .+        +..+++. ..+|+|+|+                 .++.+++.++..+.  .
T Consensus        18 ~~~~~~~~vLDiGcG~G--~~--------~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~   86 (185)
T 3mti_A           18 EVLDDESIVVDATMGNG--ND--------TAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYV   86 (185)
T ss_dssp             TTCCTTCEEEESCCTTS--HH--------HHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTC
T ss_pred             HhCCCCCEEEEEcCCCC--HH--------HHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhc
Confidence            34678899999999999  66        6677776 468999999                 46899998887753  2


Q ss_pred             CCceeEEEecccccccC--------ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 PEKVDIIVSEWMGFYLL--------HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~l~--------~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +++||+|+++.  .+++        .......++..+.++|+|||+|++....
T Consensus        87 ~~~fD~v~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           87 REPIRAAIFNL--GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             CSCEEEEEEEE--C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             cCCcCEEEEeC--CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            47899998853  2222        2345678899999999999999987654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.35  E-value=9.4e-12  Score=101.21  Aligned_cols=92  Identities=17%  Similarity=0.174  Sum_probs=75.2

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCC-CceeEEE
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELP-EKVDIIV  113 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~-~~fDlIv  113 (252)
                      ..++.+|||+|||+|  .+        +..++..+ .+++++|+            .++.++++|+..++++ ++||+|+
T Consensus        44 ~~~~~~vLdiG~G~G--~~--------~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~  112 (195)
T 3cgg_A           44 APRGAKILDAGCGQG--RI--------GGYLSKQG-HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIV  112 (195)
T ss_dssp             SCTTCEEEEETCTTT--HH--------HHHHHHTT-CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEE
T ss_pred             ccCCCeEEEECCCCC--HH--------HHHHHHCC-CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEE
Confidence            357889999999999  66        56666665 57999999            4689999999988766 7899999


Q ss_pred             ec-ccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         114 SE-WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       114 ~~-~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +. .+.+++ ...+...++..+.++|+|||++++..+.
T Consensus       113 ~~~~~~~~~-~~~~~~~~l~~~~~~l~~~G~l~~~~~~  149 (195)
T 3cgg_A          113 SAGNVMGFL-AEDGREPALANIHRALGADGRAVIGFGA  149 (195)
T ss_dssp             ECCCCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             ECCcHHhhc-ChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            97 455544 4456789999999999999999997654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.34  E-value=5.9e-12  Score=102.34  Aligned_cols=93  Identities=13%  Similarity=0.123  Sum_probs=74.0

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------Cc--eEEEEccccccCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LI--LEVIQNKIENVEL  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~--i~~~~~d~~~~~~  105 (252)
                      ....++.+|||+|||+|  .+        +..++.. ..+++|+|+                 .+  +.++++|+.....
T Consensus        48 ~~~~~~~~vLdiG~G~G--~~--------~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~  116 (194)
T 1dus_A           48 VVVDKDDDILDLGCGYG--VI--------GIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK  116 (194)
T ss_dssp             CCCCTTCEEEEETCTTS--HH--------HHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred             cccCCCCeEEEeCCCCC--HH--------HHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc
Confidence            34558889999999999  66        6666666 468999999                 22  9999999988654


Q ss_pred             CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +++||+|+++...++  ....+..++..+.++|+|||++++..+.
T Consensus       117 ~~~~D~v~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          117 DRKYNKIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             TSCEEEEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             cCCceEEEECCCccc--chhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            578999999765332  1356789999999999999999998765

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.34  E-value=7.5e-12  Score=103.94  Aligned_cols=90  Identities=17%  Similarity=0.135  Sum_probs=72.8

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~~~  106 (252)
                      ....++.+|||+|||+|  .+        +..+++.+ ..+++|+|+                 .++.++++|+......
T Consensus        36 l~~~~~~~vLDiG~G~G--~~--------~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  105 (204)
T 3e05_A           36 LRLQDDLVMWDIGAGSA--SV--------SIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD  105 (204)
T ss_dssp             TTCCTTCEEEEETCTTC--HH--------HHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT
T ss_pred             cCCCCCCEEEEECCCCC--HH--------HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc
Confidence            45678899999999999  66        66766664 368999999                 4689999999766444


Q ss_pred             -CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 -EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 -~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       ++||+|++.....      ++..++..+.++|+|||++++....
T Consensus       106 ~~~~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          106 LPDPDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             SCCCSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             CCCCCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEecc
Confidence             7899999865422      6778999999999999999998654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.34  E-value=5.9e-12  Score=105.20  Aligned_cols=89  Identities=20%  Similarity=0.117  Sum_probs=72.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEcccccc--CCC-CceeEEEe
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENV--ELP-EKVDIIVS  114 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~--~~~-~~fDlIv~  114 (252)
                      .++.+|||+|||+|  .+        +..++..+ .+++|+|+          ....++.+|+...  +++ ++||+|++
T Consensus        31 ~~~~~vLdiG~G~G--~~--------~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~   99 (230)
T 3cc8_A           31 KEWKEVLDIGCSSG--AL--------GAAIKENG-TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIF   99 (230)
T ss_dssp             TTCSEEEEETCTTS--HH--------HHHHHTTT-CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEE
T ss_pred             cCCCcEEEeCCCCC--HH--------HHHHHhcC-CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEE
Confidence            67889999999999  65        56666665 68999999          3357899999874  444 78999999


Q ss_pred             cccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         115 EWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       115 ~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..+++++   .++..++..+.++|+|||++++..+.
T Consensus       100 ~~~l~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A          100 GDVLEHL---FDPWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             ESCGGGS---SCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             CChhhhc---CCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            8877766   56679999999999999999998654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.33  E-value=2.5e-12  Score=109.55  Aligned_cols=94  Identities=12%  Similarity=-0.044  Sum_probs=76.2

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------CceEEEEccccccCCC----
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LILEVIQNKIENVELP----  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~i~~~~~d~~~~~~~----  106 (252)
                      ....++.+|||+|||+|  .+        +..++..+. +|+|+|+              .++.++++|+.+++..    
T Consensus        52 ~~~~~~~~vLD~GcG~G--~~--------~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~  120 (245)
T 3ggd_A           52 LLFNPELPLIDFACGNG--TQ--------TKFLSQFFP-RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIH  120 (245)
T ss_dssp             TTSCTTSCEEEETCTTS--HH--------HHHHHHHSS-CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHH
T ss_pred             hccCCCCeEEEEcCCCC--HH--------HHHHHHhCC-CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccc
Confidence            34677889999999999  66        667777765 7999999              3799999999887543    


Q ss_pred             --CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 --EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 --~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                        .+||+|++..+++++ ...+...++..+.++|+|||+|++....
T Consensus       121 ~~~~~d~v~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          121 SEIGDANIYMRTGFHHI-PVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             HHHCSCEEEEESSSTTS-CGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             cccCccEEEEcchhhcC-CHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence              249999998887776 3337899999999999999998877643

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.33  E-value=4.5e-12  Score=105.88  Aligned_cols=86  Identities=23%  Similarity=0.158  Sum_probs=70.5

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--CceEEEEccccccCCC-CceeEEEecccccccCC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLH  123 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~  123 (252)
                      ..++.+|||+|||+|  .+        +..+   + .+++|+|+  .++.++++|+.+++++ ++||+|++..+++   +
T Consensus        65 ~~~~~~vLDiG~G~G--~~--------~~~l---~-~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~---~  127 (215)
T 2zfu_A           65 RPASLVVADFGCGDC--RL--------ASSI---R-NPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLM---G  127 (215)
T ss_dssp             SCTTSCEEEETCTTC--HH--------HHHC---C-SCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCC---S
T ss_pred             cCCCCeEEEECCcCC--HH--------HHHh---h-ccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhcc---c
Confidence            467789999999999  54        3333   2 57999999  4688999999998776 7899999977654   2


Q ss_pred             hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         124 ESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       124 ~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       .++..++..+.++|+|||++++....
T Consensus       128 -~~~~~~l~~~~~~L~~gG~l~i~~~~  153 (215)
T 2zfu_A          128 -TNIRDFLEEANRVLKPGGLLKVAEVS  153 (215)
T ss_dssp             -SCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             -cCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence             57889999999999999999997654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.32  E-value=7.4e-12  Score=99.88  Aligned_cols=96  Identities=15%  Similarity=0.148  Sum_probs=73.5

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC------CceEEEEccccccC--------CC-C
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY------LILEVIQNKIENVE--------LP-E  107 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~------~~i~~~~~d~~~~~--------~~-~  107 (252)
                      ....++.+|||+|||+|  .+        +..+++. ++ .+++++|+      .++.++++|+.+.+        ++ +
T Consensus        18 ~~~~~~~~vLd~G~G~G--~~--------~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           18 KLFKPGMTVVDLGAAPG--GW--------SQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCCCTTCEEEEESCTTC--HH--------HHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCCCCeEEEeCCCCC--HH--------HHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCC
Confidence            44678889999999999  55        5555554 43 68999998      57899999998875        44 7


Q ss_pred             ceeEEEecccccccCChh--h------HHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVSEWMGFYLLHES--M------IDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~--~------~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +||+|+++...++.....  .      ...++..+.++|+|||.+++....
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  138 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            899999977655442221  1      168899999999999999987653

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.32  E-value=6.4e-12  Score=103.81  Aligned_cols=88  Identities=19%  Similarity=0.220  Sum_probs=72.1

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCC-Ccee
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELP-EKVD  110 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~-~~fD  110 (252)
                      .++ +|||+|||+|  .+        +..++..+ .+++|+|+                .++.++++|+..++++ ++||
T Consensus        29 ~~~-~vLdiGcG~G--~~--------~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD   96 (202)
T 2kw5_A           29 PQG-KILCLAEGEG--RN--------ACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWE   96 (202)
T ss_dssp             CSS-EEEECCCSCT--HH--------HHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCS
T ss_pred             CCC-CEEEECCCCC--Hh--------HHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCcc
Confidence            456 9999999999  66        66677666 47999999                2789999999998766 7899


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|++..  .++ +..++..++..+.++|+|||++++....
T Consensus        97 ~v~~~~--~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A           97 GIVSIF--CHL-PSSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             EEEEEC--CCC-CHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             EEEEEh--hcC-CHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            999843  222 4567899999999999999999998754

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.32  E-value=1.3e-11  Score=106.57  Aligned_cols=89  Identities=18%  Similarity=0.218  Sum_probs=71.0

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCCC-CceeEEEecc
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVELP-EKVDIIVSEW  116 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~-~~fDlIv~~~  116 (252)
                      ++.+|||+|||+|  .+        +..++..+ .+++|+|+           ....++++|+..++++ ++||+|++..
T Consensus        54 ~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  122 (260)
T 2avn_A           54 NPCRVLDLGGGTG--KW--------SLFLQERG-FEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALG  122 (260)
T ss_dssp             SCCEEEEETCTTC--HH--------HHHHHTTT-CEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECS
T ss_pred             CCCeEEEeCCCcC--HH--------HHHHHHcC-CeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcc
Confidence            7789999999999  66        66676665 47999999           1123889999998876 7899999965


Q ss_pred             cccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         117 MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       117 ~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++.++.  .++..+|..+.++|+|||++++..++
T Consensus       123 ~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          123 DVLSYV--ENKDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             SHHHHC--SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             hhhhcc--ccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            443332  34889999999999999999998765

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.31  E-value=6.6e-12  Score=105.92  Aligned_cols=89  Identities=20%  Similarity=0.221  Sum_probs=67.5

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------CceEEEEcccccc----CC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------LILEVIQNKIENV----EL  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------~~i~~~~~d~~~~----~~  105 (252)
                      ...++.+|||+|||+|  .+        +..++.. +..+|+|+|+               .++.++.+|+...    ++
T Consensus        54 ~~~~g~~VLDlGcGtG--~~--------~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~  123 (210)
T 1nt2_A           54 KLRGDERVLYLGAASG--TT--------VSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGI  123 (210)
T ss_dssp             CCCSSCEEEEETCTTS--HH--------HHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTT
T ss_pred             CCCCCCEEEEECCcCC--HH--------HHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhccc
Confidence            4567899999999999  55        5555554 2357999999               4678888898774    33


Q ss_pred             CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +++||+|+++.     .+......++..+.++|||||+|++...
T Consensus       124 ~~~fD~V~~~~-----~~~~~~~~~l~~~~r~LkpgG~l~i~~~  162 (210)
T 1nt2_A          124 VEKVDLIYQDI-----AQKNQIEILKANAEFFLKEKGEVVIMVK  162 (210)
T ss_dssp             CCCEEEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccceeEEEEec-----cChhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            47899999863     2223455668999999999999999853

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.31  E-value=5.2e-12  Score=104.26  Aligned_cols=95  Identities=17%  Similarity=0.095  Sum_probs=70.0

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C--CCcEEEeeC------CceEEEEccccccC-----------
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H--PLDHYAPQY------LILEVIQNKIENVE-----------  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g--~~~v~gvD~------~~i~~~~~d~~~~~-----------  104 (252)
                      ....++.+|||+|||+|  .+        +..+++. +  ..+|+|+|+      .++.++++|+...+           
T Consensus        18 ~~~~~~~~vLDlGcG~G--~~--------~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           18 LFLKKNKIILDIGCYPG--SW--------CQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CCCCTTEEEEEESCTTC--HH--------HHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-------
T ss_pred             CCCCCCCEEEEeCCCCC--HH--------HHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccc
Confidence            34567889999999999  55        5666654 3  257999999      36899999998876           


Q ss_pred             --------------CC-CceeEEEecccccccCC-hhhH-------HHHHHHHhccccCCeEEEeecc
Q psy9773         105 --------------LP-EKVDIIVSEWMGFYLLH-ESMI-------DSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       105 --------------~~-~~fDlIv~~~~~~~l~~-~~~~-------~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                                    ++ ++||+|+++.+.++... ..+.       ..++..+.++|+|||.|++...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY  155 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence                          34 68999999765443211 1121       2478889999999999998653

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.31  E-value=4.9e-12  Score=115.81  Aligned_cols=91  Identities=23%  Similarity=0.303  Sum_probs=74.4

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC----------C---------------ceEEEEcc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY----------L---------------ILEVIQNK   99 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~----------~---------------~i~~~~~d   99 (252)
                      ..++.+|||||||+|  .+        +..++..  ...+|+|+|+          .               ++.++++|
T Consensus        81 ~~~~~~VLDlGcG~G--~~--------~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d  150 (383)
T 4fsd_A           81 SLEGATVLDLGCGTG--RD--------VYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGF  150 (383)
T ss_dssp             GGTTCEEEEESCTTS--HH--------HHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESC
T ss_pred             CCCCCEEEEecCccC--HH--------HHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEcc
Confidence            457899999999999  55        5555543  2348999999          1               68899999


Q ss_pred             cccc------CCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         100 IENV------ELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~------~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.++      +++ ++||+|+++.+++++   +++..+|..+.++|+|||+|++....
T Consensus       151 ~~~l~~~~~~~~~~~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~~~  205 (383)
T 4fsd_A          151 IENLATAEPEGVPDSSVDIVISNCVCNLS---TNKLALFKEIHRVLRDGGELYFSDVY  205 (383)
T ss_dssp             TTCGGGCBSCCCCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHhhhcccCCCCCCCEEEEEEccchhcC---CCHHHHHHHHHHHcCCCCEEEEEEec
Confidence            9987      665 789999998887776   56889999999999999999998653

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.30  E-value=4.2e-12  Score=111.10  Aligned_cols=97  Identities=11%  Similarity=0.071  Sum_probs=72.6

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCC----
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVEL----  105 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~----  105 (252)
                      +.......++.+|||||||+|  .+        +..+++.+ .+|+|+|+           ....+++.++.++..    
T Consensus        37 il~~l~l~~g~~VLDlGcGtG--~~--------a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~  105 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGASTR--FL--------IEKALERG-ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPK  105 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTTCH--HH--------HHHHHHTT-CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCG
T ss_pred             HHHhcCCCCcCEEEEEeCcch--HH--------HHHHHhcC-CEEEEEECCHHHHHHHHHHHHhccceeeeeeccccccc
Confidence            444456788899999999999  66        77778776 47999999           111134455554433    


Q ss_pred             --CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 --PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 --~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                        .++||+|+++.+++++. ..+...++..+.++| |||+|+++...
T Consensus       106 ~~~~~fD~Vv~~~~l~~~~-~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          106 ELAGHFDFVLNDRLINRFT-TEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             GGTTCCSEEEEESCGGGSC-HHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             ccCCCccEEEEhhhhHhCC-HHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence              36899999988877663 346788999999999 99999998653

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.29  E-value=1.6e-11  Score=103.22  Aligned_cols=83  Identities=16%  Similarity=0.100  Sum_probs=68.8

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCCC-CceeEEEecccc
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVELP-EKVDIIVSEWMG  118 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~  118 (252)
                      +.+|||+|||+|  .+        +..++..     +|+|+          .++.++++|+..++++ ++||+|++..++
T Consensus        48 ~~~vLDiG~G~G--~~--------~~~l~~~-----~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  112 (219)
T 1vlm_A           48 EGRGVEIGVGTG--RF--------AVPLKIK-----IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTI  112 (219)
T ss_dssp             SSCEEEETCTTS--TT--------HHHHTCC-----EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCcEEEeCCCCC--HH--------HHHHHHH-----hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchH
Confidence            889999999999  44        4444322     89998          3789999999988776 789999998887


Q ss_pred             cccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         119 FYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       119 ~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +++   .++..+|..+.++|+|||++++..+.
T Consensus       113 ~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A          113 CFV---DDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             GGS---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhc---cCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence            766   56789999999999999999998653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.29  E-value=1.1e-11  Score=103.08  Aligned_cols=94  Identities=17%  Similarity=0.152  Sum_probs=70.6

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------CceEEEEccccccCC--------C----
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------LILEVIQNKIENVEL--------P----  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------~~i~~~~~d~~~~~~--------~----  106 (252)
                      ....++.+|||||||+|  .+        +..+++.+ .+|+|+|+      .++.++++|+.+...        +    
T Consensus        21 ~~~~~g~~VLDlG~G~G--~~--------s~~la~~~-~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~   89 (191)
T 3dou_A           21 RVVRKGDAVIEIGSSPG--GW--------TQVLNSLA-RKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGI   89 (191)
T ss_dssp             CCSCTTCEEEEESCTTC--HH--------HHHHTTTC-SEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTC
T ss_pred             CCCCCCCEEEEEeecCC--HH--------HHHHHHcC-CcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccC
Confidence            44578899999999999  66        77777764 57999999      478999999988642        1    


Q ss_pred             CceeEEEecccccccCC--------hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLLH--------ESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~--------~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++||+|+|+........        ......++..+.++|+|||.|++...
T Consensus        90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~  140 (191)
T 3dou_A           90 EKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF  140 (191)
T ss_dssp             SSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            48999999654221111        01245778888999999999997654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.29  E-value=8.8e-12  Score=101.34  Aligned_cols=93  Identities=16%  Similarity=0.014  Sum_probs=70.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCC--
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVEL--  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~--  105 (252)
                      ...++.+|||+|||+|  .+        +..++..+..+|+|+|+                  .++.++++|+.+...  
T Consensus        41 ~~~~~~~vLD~GcG~G--~~--------~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  110 (187)
T 2fhp_A           41 PYFDGGMALDLYSGSG--GL--------AIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQF  110 (187)
T ss_dssp             SCCSSCEEEETTCTTC--HH--------HHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred             hhcCCCCEEEeCCccC--HH--------HHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHH
Confidence            3467889999999999  65        55566666678999999                  258999999987532  


Q ss_pred             ---CCceeEEEecccccccCChhhHHHHHHHH--hccccCCeEEEeeccccc
Q psy9773         106 ---PEKVDIIVSEWMGFYLLHESMIDSVIFAR--DKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       106 ---~~~fDlIv~~~~~~~l~~~~~~~~~l~~l--~~~LkpgG~lv~~~~~~~  152 (252)
                         .++||+|+++...+ .   .....++..+  .++|+|||++++..+...
T Consensus       111 ~~~~~~fD~i~~~~~~~-~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          111 YEEKLQFDLVLLDPPYA-K---QEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             HHTTCCEEEEEECCCGG-G---CCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HhcCCCCCEEEECCCCC-c---hhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence               47899999976522 2   2345566666  899999999999876543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.29  E-value=1.7e-11  Score=102.70  Aligned_cols=86  Identities=9%  Similarity=-0.050  Sum_probs=69.5

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------C-ceEEEEccccccC-CC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------L-ILEVIQNKIENVE-LP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~-~i~~~~~d~~~~~-~~  106 (252)
                      ...++.+|||+|||+|  .+        +..+++.+ .+|+|+|+                 . ++.++++|+.... ..
T Consensus        52 ~~~~~~~vLDlGcG~G--~~--------~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~  120 (204)
T 3njr_A           52 APRRGELLWDIGGGSG--SV--------SVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL  120 (204)
T ss_dssp             CCCTTCEEEEETCTTC--HH--------HHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS
T ss_pred             CCCCCCEEEEecCCCC--HH--------HHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC
Confidence            4677899999999999  66        66777774 68999999                 3 7999999998843 33


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+||+|++...   +    +.. ++..+.++|+|||+|++....
T Consensus       121 ~~~D~v~~~~~---~----~~~-~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          121 PLPEAVFIGGG---G----SQA-LYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             CCCSEEEECSC---C----CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred             CCCCEEEECCc---c----cHH-HHHHHHHhcCCCcEEEEEecC
Confidence            68999998552   2    355 899999999999999998764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.28  E-value=1.9e-11  Score=103.85  Aligned_cols=88  Identities=22%  Similarity=0.231  Sum_probs=69.1

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------CceEEEEccccc----cC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------LILEVIQNKIEN----VE  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------~~i~~~~~d~~~----~~  104 (252)
                      ....++.+|||+|||+|  .+        +..++.. |..+|+|+|+               .++.++.+|+..    .+
T Consensus        70 ~~~~~~~~VLDlGcG~G--~~--------~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~  139 (230)
T 1fbn_A           70 MPIKRDSKILYLGASAG--TT--------PSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYAN  139 (230)
T ss_dssp             CCCCTTCEEEEESCCSS--HH--------HHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTT
T ss_pred             cCCCCCCEEEEEcccCC--HH--------HHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccc
Confidence            44567899999999999  66        6666665 4468999999               468899999987    55


Q ss_pred             CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773         105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      ++++||+|++.     +........++..+.++|+|||++++.
T Consensus       140 ~~~~~D~v~~~-----~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          140 IVEKVDVIYED-----VAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             TSCCEEEEEEC-----CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCccEEEEEEe-----cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            55789999842     233334577899999999999999996

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.28  E-value=8.5e-12  Score=107.90  Aligned_cols=95  Identities=15%  Similarity=0.176  Sum_probs=72.9

Q ss_pred             CCCC-CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCC
Q psy9773          45 PNIF-AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVEL  105 (252)
Q Consensus        45 ~~~~-~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~  105 (252)
                      .... ++.+|||+|||+|  .+        +..++..+..+|+|+|+                  .++.++++|+.++..
T Consensus        44 ~~~~~~~~~vLDlG~G~G--~~--------~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~  113 (259)
T 3lpm_A           44 SYLPIRKGKIIDLCSGNG--II--------PLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD  113 (259)
T ss_dssp             CCCCSSCCEEEETTCTTT--HH--------HHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGG
T ss_pred             hcCCCCCCEEEEcCCchh--HH--------HHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhh
Confidence            3456 7899999999999  66        77777766558999999                  369999999998863


Q ss_pred             ---CCceeEEEeccccccc-----CC------------hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 ---PEKVDIIVSEWMGFYL-----LH------------ESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 ---~~~fDlIv~~~~~~~l-----~~------------~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                         .++||+|++++..+..     ..            ..++..++..+.++|+|||+|++..+
T Consensus       114 ~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  177 (259)
T 3lpm_A          114 LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR  177 (259)
T ss_dssp             TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence               3789999997643221     01            12467899999999999999999653

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.28  E-value=5.9e-12  Score=102.03  Aligned_cols=92  Identities=16%  Similarity=0.083  Sum_probs=70.2

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEcccccc-C-CC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENV-E-LP  106 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~-~-~~  106 (252)
                      ..++.+|||+|||+|  .+        +..+++.+..+|+|+|+                  .++.++++|+.+. + .+
T Consensus        29 ~~~~~~vLDlGcG~G--~~--------~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (177)
T 2esr_A           29 YFNGGRVLDLFAGSG--GL--------AIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT   98 (177)
T ss_dssp             CCCSCEEEEETCTTC--HH--------HHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred             hcCCCeEEEeCCCCC--HH--------HHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc
Confidence            567889999999999  66        66666666678999999                  2589999999874 2 23


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHh--ccccCCeEEEeeccccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARD--KFLKPEGVMYPYKCILH  152 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~--~~LkpgG~lv~~~~~~~  152 (252)
                      ++||+|+++...+    ......++..+.  ++|+|||++++......
T Consensus        99 ~~fD~i~~~~~~~----~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           99 GRFDLVFLDPPYA----KETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             SCEEEEEECCSSH----HHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCCCEEEECCCCC----cchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            6799999976422    134556666665  99999999999876533

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.27  E-value=1.9e-11  Score=101.67  Aligned_cols=86  Identities=13%  Similarity=0.020  Sum_probs=69.4

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC-
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP-  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~-  106 (252)
                      ....++.+|||+|||+|  .+        +..++..+ .+|+++|+                 .++.++.+|+.....+ 
T Consensus        73 l~~~~~~~vLdiG~G~G--~~--------~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  141 (210)
T 3lbf_A           73 LELTPQSRVLEIGTGSG--YQ--------TAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR  141 (210)
T ss_dssp             TTCCTTCEEEEECCTTS--HH--------HHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             cCCCCCCEEEEEcCCCC--HH--------HHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC
Confidence            45678899999999999  66        66666664 68999999                 3689999999886554 


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++||+|++..+.+++..         .+.++|+|||+|++..+.
T Consensus       142 ~~~D~i~~~~~~~~~~~---------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          142 APFDAIIVTAAPPEIPT---------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CCEEEEEESSBCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred             CCccEEEEccchhhhhH---------HHHHhcccCcEEEEEEcC
Confidence            78999999777665532         467999999999998765

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.26  E-value=6.8e-12  Score=107.23  Aligned_cols=85  Identities=16%  Similarity=0.135  Sum_probs=68.0

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCC----
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVEL----  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~----  105 (252)
                      .++.+|||+|||+|  .+        +..++. .+..+|+|+|+                 .++.++++|+.+++.    
T Consensus        69 ~~~~~vLDiG~G~G--~~--------~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  138 (240)
T 1xdz_A           69 NQVNTICDVGAGAG--FP--------SLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDV  138 (240)
T ss_dssp             GGCCEEEEECSSSC--TT--------HHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTT
T ss_pred             CCCCEEEEecCCCC--HH--------HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccc
Confidence            46789999999999  55        555553 22357999999                 369999999988764    


Q ss_pred             CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .++||+|++..+       .++..++..+.++|+|||+|++...
T Consensus       139 ~~~fD~V~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g  175 (240)
T 1xdz_A          139 RESYDIVTARAV-------ARLSVLSELCLPLVKKNGLFVALKA  175 (240)
T ss_dssp             TTCEEEEEEECC-------SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             cCCccEEEEecc-------CCHHHHHHHHHHhcCCCCEEEEEeC
Confidence            378999998542       4578999999999999999998753

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.26  E-value=1.4e-11  Score=101.45  Aligned_cols=95  Identities=13%  Similarity=0.094  Sum_probs=71.7

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC------------------CceEEEEccccccC-
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY------------------LILEVIQNKIENVE-  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~------------------~~i~~~~~d~~~~~-  104 (252)
                      ...++.+|||+|||+|  .+        +..+++.  +..+++|+|+                  .++.++++|+..++ 
T Consensus        19 ~~~~~~~vLDlGcG~G--~~--------~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~   88 (197)
T 3eey_A           19 FVKEGDTVVDATCGNG--ND--------TAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK   88 (197)
T ss_dssp             HCCTTCEEEESCCTTS--HH--------HHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG
T ss_pred             cCCCCCEEEEcCCCCC--HH--------HHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh
Confidence            3567899999999999  55        5555554  3358999999                  36899999998875 


Q ss_pred             -CCCceeEEEecccc------cccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 -LPEKVDIIVSEWMG------FYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 -~~~~fDlIv~~~~~------~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       .+++||+|+++...      .......+...++..+.++|+|||++++....
T Consensus        89 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           89 YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence             23789999986532      01223335678999999999999999987644

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.26  E-value=9.8e-12  Score=115.01  Aligned_cols=91  Identities=14%  Similarity=0.155  Sum_probs=72.4

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC--------------------------CceEEEE
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY--------------------------LILEVIQ   97 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~--------------------------~~i~~~~   97 (252)
                      ....++.+|||||||+|  .+        ++.++. .++.+++|||+                          .++.|++
T Consensus       169 l~l~~gd~VLDLGCGtG--~l--------~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~  238 (438)
T 3uwp_A          169 IKMTDDDLFVDLGSGVG--QV--------VLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  238 (438)
T ss_dssp             HCCCTTCEEEEESCTTS--HH--------HHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred             cCCCCCCEEEEeCCCCC--HH--------HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            46788999999999999  54        445543 56556999999                          1588999


Q ss_pred             ccccccCCC---CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          98 NKIENVELP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        98 ~d~~~~~~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +|+.+++++   ..||+|+++...    +.+++...|.++.+.|+|||+|++...
T Consensus       239 GD~~~lp~~d~~~~aDVVf~Nn~~----F~pdl~~aL~Ei~RvLKPGGrIVssE~  289 (438)
T 3uwp_A          239 GDFLSEEWRERIANTSVIFVNNFA----FGPEVDHQLKERFANMKEGGRIVSSKP  289 (438)
T ss_dssp             CCTTSHHHHHHHHTCSEEEECCTT----CCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred             CcccCCccccccCCccEEEEcccc----cCchHHHHHHHHHHcCCCCcEEEEeec
Confidence            999988764   479999996652    235788889999999999999998754

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.26  E-value=1.9e-11  Score=100.34  Aligned_cols=95  Identities=15%  Similarity=0.147  Sum_probs=69.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC---------CcEEEeeC------CceEEE-EccccccC---
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP---------LDHYAPQY------LILEVI-QNKIENVE---  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~---------~~v~gvD~------~~i~~~-~~d~~~~~---  104 (252)
                      ....++.+|||+|||+|  .+        +..+++. +.         .+|+|+|+      .++.++ ++|+....   
T Consensus        18 ~~~~~~~~vLDlGcG~G--~~--------~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           18 QILRPGLRVLDCGAAPG--AW--------SQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CCCCTTCEEEEETCCSC--HH--------HHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHH
T ss_pred             CCCCCCCEEEEeCCCCC--HH--------HHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHH
Confidence            44577899999999999  55        5566654 43         57999999      457888 88887653   


Q ss_pred             -----CC-CceeEEEecccccccCCh-hhH-------HHHHHHHhccccCCeEEEeecc
Q psy9773         105 -----LP-EKVDIIVSEWMGFYLLHE-SMI-------DSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       105 -----~~-~~fDlIv~~~~~~~l~~~-~~~-------~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                           ++ ++||+|++....+...+. .+.       ..++..+.++|+|||+|++...
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence                 22 579999996543322211 222       4789999999999999998754

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.25  E-value=4.8e-11  Score=106.10  Aligned_cols=90  Identities=10%  Similarity=0.050  Sum_probs=71.7

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELPE  107 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~  107 (252)
                      ..+.++.+|||||||+|+.+.         ..+++....+|+|+|+                 .+++++++|+.+++ .+
T Consensus       118 a~l~~g~rVLDIGcG~G~~ta---------~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~-d~  187 (298)
T 3fpf_A          118 GRFRRGERAVFIGGGPLPLTG---------ILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID-GL  187 (298)
T ss_dssp             TTCCTTCEEEEECCCSSCHHH---------HHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-GC
T ss_pred             cCCCCcCEEEEECCCccHHHH---------HHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-CC
Confidence            567899999999999994432         3344432357999999                 57999999999876 57


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +||+|++...   .   ++...++..+.++|+|||+|++....
T Consensus       188 ~FDvV~~~a~---~---~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          188 EFDVLMVAAL---A---EPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             CCSEEEECTT---C---SCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CcCEEEECCC---c---cCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            8999997432   2   57889999999999999999987653

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.25  E-value=2.7e-11  Score=104.76  Aligned_cols=93  Identities=13%  Similarity=0.090  Sum_probs=70.1

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeCC------------------------ceEEEEc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQYL------------------------ILEVIQN   98 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~~------------------------~i~~~~~   98 (252)
                      ....++.+|||||||+|  .+        +..++.. |+ .+|+|+|+.                        +++++++
T Consensus        39 ~~~~~~~~vLDiGcG~G--~~--------~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~  108 (275)
T 3bkx_A           39 WQVKPGEKILEIGCGQG--DL--------SAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN  108 (275)
T ss_dssp             HTCCTTCEEEEESCTTS--HH--------HHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECS
T ss_pred             cCCCCCCEEEEeCCCCC--HH--------HHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEEC
Confidence            35678899999999999  65        5566664 44 589999982                        5889999


Q ss_pred             c---ccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          99 K---IENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        99 d---~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |   ...++++ ++||+|++..+++++.   +...++..+.++++|||++++....
T Consensus       109 d~~~~~~~~~~~~~fD~v~~~~~l~~~~---~~~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          109 TNLSDDLGPIADQHFDRVVLAHSLWYFA---SANALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             CCTTTCCGGGTTCCCSEEEEESCGGGSS---CHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             ChhhhccCCCCCCCEEEEEEccchhhCC---CHHHHHHHHHHHhCCCCEEEEEEec
Confidence            8   3344444 7899999988877774   4455777777777789999987643

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.25  E-value=1.1e-11  Score=103.33  Aligned_cols=90  Identities=16%  Similarity=0.068  Sum_probs=70.8

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------C---ceEEEEccccccCC---C
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------L---ILEVIQNKIENVEL---P  106 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~---~i~~~~~d~~~~~~---~  106 (252)
                      ++.+|||+|||+|  .+        +..++..++.+|+|+|+                .   ++.++++|+.++..   .
T Consensus        53 ~~~~vLDlGcGtG--~~--------~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  122 (201)
T 2ift_A           53 HQSECLDGFAGSG--SL--------GFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQN  122 (201)
T ss_dssp             TTCEEEETTCTTC--HH--------HHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCS
T ss_pred             CCCeEEEcCCccC--HH--------HHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhcc
Confidence            6789999999999  66        66656666678999999                1   68999999987643   3


Q ss_pred             Cc-eeEEEecccccccCChhhHHHHHHHH--hccccCCeEEEeeccccc
Q psy9773         107 EK-VDIIVSEWMGFYLLHESMIDSVIFAR--DKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       107 ~~-fDlIv~~~~~~~l~~~~~~~~~l~~l--~~~LkpgG~lv~~~~~~~  152 (252)
                      ++ ||+|+++... +   ......++..+  .++|+|||++++......
T Consensus       123 ~~~fD~I~~~~~~-~---~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          123 QPHFDVVFLDPPF-H---FNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             SCCEEEEEECCCS-S---SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCCCCEEEECCCC-C---CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            68 9999997752 2   34677788888  778999999999887644

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.24  E-value=4.1e-12  Score=117.05  Aligned_cols=102  Identities=14%  Similarity=0.135  Sum_probs=75.7

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEE-----cc
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQ-----NK   99 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~-----~d   99 (252)
                      ..+...+.......++.+|||||||+|  .+        +..++..+. +|+|+|+          ..+....     .+
T Consensus        93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G--~~--------~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~  161 (416)
T 4e2x_A           93 AMLARDFLATELTGPDPFIVEIGCNDG--IM--------LRTIQEAGV-RHLGFEPSSGVAAKAREKGIRVRTDFFEKAT  161 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTT--TT--------HHHHHHTTC-EEEEECCCHHHHHHHHTTTCCEECSCCSHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCC--HH--------HHHHHHcCC-cEEEECCCHHHHHHHHHcCCCcceeeechhh
Confidence            334455555556678899999999999  55        666677764 7999999          2233332     23


Q ss_pred             ccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         100 IENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ...++++ ++||+|++..+++++   +++..+|..+.++|+|||+|++..+.
T Consensus       162 ~~~l~~~~~~fD~I~~~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          162 ADDVRRTEGPANVIYAANTLCHI---PYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             HHHHHHHHCCEEEEEEESCGGGC---TTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HhhcccCCCCEEEEEECChHHhc---CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            3333333 789999998887777   68899999999999999999998653

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.24  E-value=3.6e-11  Score=108.45  Aligned_cols=93  Identities=18%  Similarity=0.188  Sum_probs=72.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC---------------CceEEEEccccccCCCCc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY---------------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~---------------~~i~~~~~d~~~~~~~~~  108 (252)
                      ....++.+|||||||+|  .+        +..+++..+ .+++++|+               .+++++.+|+. .+.| +
T Consensus       180 ~~~~~~~~vLDvG~G~G--~~--------~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p-~  247 (348)
T 3lst_A          180 GDFPATGTVADVGGGRG--GF--------LLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL-REVP-H  247 (348)
T ss_dssp             SCCCSSEEEEEETCTTS--HH--------HHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTT-TCCC-C
T ss_pred             CCccCCceEEEECCccC--HH--------HHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCC-CCCC-C
Confidence            44567789999999999  55        555555332 46888886               46999999997 3445 8


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ||+|++..++|++. ..+...+|++++++|+|||+|++....
T Consensus       248 ~D~v~~~~vlh~~~-d~~~~~~L~~~~~~LkpgG~l~i~e~~  288 (348)
T 3lst_A          248 ADVHVLKRILHNWG-DEDSVRILTNCRRVMPAHGRVLVIDAV  288 (348)
T ss_dssp             CSEEEEESCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred             CcEEEEehhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            99999988877763 224579999999999999999987754

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.24  E-value=2.1e-11  Score=101.11  Aligned_cols=87  Identities=23%  Similarity=0.235  Sum_probs=70.2

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCCCce
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      ..++.+|||+|||+|  .+        +..+++.+..+++|+|+                 .++.++++|+.+.. +++|
T Consensus        58 ~~~~~~vLDiG~G~G--~~--------~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~f  126 (205)
T 3grz_A           58 MVKPLTVADVGTGSG--IL--------AIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV-DGKF  126 (205)
T ss_dssp             CSSCCEEEEETCTTS--HH--------HHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC-CSCE
T ss_pred             ccCCCEEEEECCCCC--HH--------HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC-CCCc
Confidence            457889999999999  66        66677776668999999                 23899999997753 4789


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|+++...+      .+..++..+.++|+|||++++....
T Consensus       127 D~i~~~~~~~------~~~~~l~~~~~~L~~gG~l~~~~~~  161 (205)
T 3grz_A          127 DLIVANILAE------ILLDLIPQLDSHLNEDGQVIFSGID  161 (205)
T ss_dssp             EEEEEESCHH------HHHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred             eEEEECCcHH------HHHHHHHHHHHhcCCCCEEEEEecC
Confidence            9999966532      3578899999999999999997543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.24  E-value=1.1e-11  Score=102.75  Aligned_cols=84  Identities=19%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccCCCCcee
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVELPEKVD  110 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~fD  110 (252)
                      ++.+|||+|||+|  .+        +..++.. +..+++++|+                 .++.++++|+..++..++||
T Consensus        65 ~~~~vLDiG~G~G--~~--------~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D  134 (207)
T 1jsx_A           65 QGERFIDVGTGPG--LP--------GIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFD  134 (207)
T ss_dssp             CSSEEEEETCTTT--TT--------HHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEE
T ss_pred             CCCeEEEECCCCC--HH--------HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcC
Confidence            5789999999999  54        5555553 3468999999                 34899999999887557899


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +|++..+       .++..++..+.++|+|||++++...
T Consensus       135 ~i~~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          135 GVISRAF-------ASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             EEECSCS-------SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             EEEEecc-------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9998442       3567899999999999999999854

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.23  E-value=2.4e-11  Score=105.22  Aligned_cols=87  Identities=18%  Similarity=0.055  Sum_probs=69.3

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccCCC--
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVELP--  106 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~--  106 (252)
                      ..++.+|||||||+|  .+        ++.++.. +..+|+++|+                 .+++++++|+.+++..  
T Consensus        78 ~~~~~~vLDiG~G~G--~~--------~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~  147 (249)
T 3g89_A           78 WQGPLRVLDLGTGAG--FP--------GLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAG  147 (249)
T ss_dssp             CCSSCEEEEETCTTT--TT--------HHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTT
T ss_pred             cCCCCEEEEEcCCCC--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccc
Confidence            356789999999999  55        5565554 3468999999                 4699999999888642  


Q ss_pred             --CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 --EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 --~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                        ++||+|++..+       .++..++..+.++|+|||+|++..+.
T Consensus       148 ~~~~fD~I~s~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~  186 (249)
T 3g89_A          148 HREAYARAVARAV-------APLCVLSELLLPFLEVGGAAVAMKGP  186 (249)
T ss_dssp             TTTCEEEEEEESS-------CCHHHHHHHHGGGEEEEEEEEEEECS
T ss_pred             cCCCceEEEECCc-------CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence              78999998543       35678999999999999999876543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.23  E-value=2.2e-11  Score=98.20  Aligned_cols=87  Identities=15%  Similarity=0.043  Sum_probs=65.7

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------C-ceEEEEccccc-cCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------L-ILEVIQNKIEN-VEL  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~-~i~~~~~d~~~-~~~  105 (252)
                      ...++.+|||+|||+|  .+        +..++.. +..+++++|+                 . ++ ++.+|+.. ++.
T Consensus        22 ~~~~~~~vldiG~G~G--~~--------~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~   90 (178)
T 3hm2_A           22 APKPHETLWDIGGGSG--SI--------AIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD   90 (178)
T ss_dssp             CCCTTEEEEEESTTTT--HH--------HHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG
T ss_pred             cccCCCeEEEeCCCCC--HH--------HHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc
Confidence            4678889999999999  65        5565554 3468999999                 2 67 88888754 333


Q ss_pred             C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      . ++||+|++....++       ..++..+.++|+|||++++....
T Consensus        91 ~~~~~D~i~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           91 VPDNPDVIFIGGGLTA-------PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             CCSCCSEEEECC-TTC-------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             cCCCCCEEEECCcccH-------HHHHHHHHHhcCCCCEEEEEeec
Confidence            3 78999998665332       56888999999999999987754

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.23  E-value=3.5e-11  Score=103.55  Aligned_cols=97  Identities=20%  Similarity=0.193  Sum_probs=73.8

Q ss_pred             HHHHHHh---CCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC---------------CceEEE
Q psy9773          37 YRAAICD---NPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY---------------LILEVI   96 (252)
Q Consensus        37 ~~~~l~~---~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~---------------~~i~~~   96 (252)
                      +..+|..   ...+.+|.+|||+|||+|  .+        +..+++ .|+ .+|+|+|+               .++..+
T Consensus        62 laa~i~~gl~~l~ikpG~~VldlG~G~G--~~--------~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V  131 (233)
T 4df3_A           62 LAAALLKGLIELPVKEGDRILYLGIASG--TT--------ASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPI  131 (233)
T ss_dssp             HHHHHHTTCSCCCCCTTCEEEEETCTTS--HH--------HHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEE
T ss_pred             HHHHHHhchhhcCCCCCCEEEEecCcCC--HH--------HHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEE
Confidence            4445543   256889999999999999  55        556655 344 58999999               678889


Q ss_pred             EccccccCC---C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773          97 QNKIENVEL---P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        97 ~~d~~~~~~---~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .+|......   . .++|+|++..     .+..+...++.++.+.|||||++++..
T Consensus       132 ~~d~~~p~~~~~~~~~vDvVf~d~-----~~~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          132 LGDARFPEKYRHLVEGVDGLYADV-----AQPEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             ESCTTCGGGGTTTCCCEEEEEECC-----CCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeccCccccccccceEEEEEEec-----cCChhHHHHHHHHHHhccCCCEEEEEE
Confidence            888876532   2 7899998743     333567889999999999999999864

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.23  E-value=4.3e-11  Score=100.88  Aligned_cols=96  Identities=17%  Similarity=0.161  Sum_probs=70.7

Q ss_pred             CCCCCCCEEEEEcCC-cCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEcccccc-CCC
Q psy9773          45 PNIFAGKTVLDVGTG-TGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENV-ELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcG-tG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~-~~~  106 (252)
                      ....++.+|||+||| +|  .+        +..++..+..+|+|+|+                .++.++++|+..+ +++
T Consensus        51 ~~~~~~~~vLDlG~G~~G--~~--------~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  120 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTA--MM--------ALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVV  120 (230)
T ss_dssp             TTCCSSCEEEEECCTTTC--HH--------HHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTC
T ss_pred             hhcCCCCEEEEcCCCHHH--HH--------HHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcc
Confidence            345688999999999 99  66        66666652368999999                2589999997544 233


Q ss_pred             -CceeEEEecccccccC----------------ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 -EKVDIIVSEWMGFYLL----------------HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 -~~fDlIv~~~~~~~l~----------------~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       ++||+|++++..+...                ....+..++..+.++|+|||++++..+.
T Consensus       121 ~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (230)
T 3evz_A          121 EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD  181 (230)
T ss_dssp             CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred             cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence             7899999976533221                1123578999999999999999987543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.22  E-value=4e-11  Score=107.21  Aligned_cols=93  Identities=17%  Similarity=0.048  Sum_probs=72.8

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccCCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVELPE  107 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~  107 (252)
                      ...++.+|||+|||+|  .+        +..+++. +..+++++|+                 .++++..+|+. .+.|.
T Consensus       166 ~~~~~~~vlDvG~G~G--~~--------~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~  234 (332)
T 3i53_A          166 DWAALGHVVDVGGGSG--GL--------LSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA  234 (332)
T ss_dssp             CCGGGSEEEEETCTTS--HH--------HHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC
T ss_pred             CCCCCCEEEEeCCChh--HH--------HHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC
Confidence            3345689999999999  55        5555553 3357999997                 46999999997 44445


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +||+|++..+++++.. +....+|++++++|+|||+|++....
T Consensus       235 ~~D~v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~  276 (332)
T 3i53_A          235 GAGGYVLSAVLHDWDD-LSAVAILRRCAEAAGSGGVVLVIEAV  276 (332)
T ss_dssp             SCSEEEEESCGGGSCH-HHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             CCcEEEEehhhccCCH-HHHHHHHHHHHHhcCCCCEEEEEeec
Confidence            8999999998877632 24689999999999999999987754

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.22  E-value=2.4e-11  Score=101.45  Aligned_cols=92  Identities=13%  Similarity=0.115  Sum_probs=70.0

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEcccccc-CCC-Cce
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENV-ELP-EKV  109 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~-~~~-~~f  109 (252)
                      ++.+|||+|||+|  .+        +..++..++.+|+|+|+                 .+++++++|+.++ +.. ++|
T Consensus        54 ~~~~vLDlgcG~G--~~--------~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f  123 (202)
T 2fpo_A           54 VDAQCLDCFAGSG--AL--------GLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPH  123 (202)
T ss_dssp             TTCEEEETTCTTC--HH--------HHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCE
T ss_pred             CCCeEEEeCCCcC--HH--------HHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCC
Confidence            6789999999999  66        66666666678999999                 2789999999874 433 689


Q ss_pred             eEEEecccccccCChhhHHHHHHHHh--ccccCCeEEEeeccccccC
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARD--KFLKPEGVMYPYKCILHSA  154 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~--~~LkpgG~lv~~~~~~~~~  154 (252)
                      |+|+++.. ++   ......++..+.  ++|+|||+|++........
T Consensus       124 D~V~~~~p-~~---~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~~  166 (202)
T 2fpo_A          124 NIVFVDPP-FR---RGLLEETINLLEDNGWLADEALIYVESEVENGL  166 (202)
T ss_dssp             EEEEECCS-SS---TTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGCS
T ss_pred             CEEEECCC-CC---CCcHHHHHHHHHhcCccCCCcEEEEEECCCccc
Confidence            99999765 22   245566777764  4699999999988764443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.22  E-value=4e-11  Score=101.14  Aligned_cols=86  Identities=19%  Similarity=0.147  Sum_probs=68.4

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCC-CCc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVEL-PEK  108 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~-~~~  108 (252)
                      ....++.+|||+|||+|  .+        +..++..+ .+|+|+|+               .++.++++|+..... .++
T Consensus        66 ~~~~~~~~vLdiG~G~G--~~--------~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~  134 (231)
T 1vbf_A           66 LDLHKGQKVLEIGTGIG--YY--------TALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP  134 (231)
T ss_dssp             TTCCTTCEEEEECCTTS--HH--------HHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred             cCCCCCCEEEEEcCCCC--HH--------HHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCC
Confidence            45678899999999999  66        66777766 68999999               178999999987332 378


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ||+|++..+.+++.         ..+.++|+|||++++..+.
T Consensus       135 fD~v~~~~~~~~~~---------~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          135 YDRVVVWATAPTLL---------CKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             EEEEEESSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred             ccEEEECCcHHHHH---------HHHHHHcCCCcEEEEEEcC
Confidence            99999977765552         3577899999999988764

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.22  E-value=2.4e-11  Score=106.64  Aligned_cols=87  Identities=11%  Similarity=-0.004  Sum_probs=71.5

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~  108 (252)
                      ..++.+|||+|||+|  .+        +..+++.++.+|+|+|+                  .++.++++|+.++...++
T Consensus       123 ~~~~~~VLDlgcG~G--~~--------~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~  192 (278)
T 2frn_A          123 AKPDELVVDMFAGIG--HL--------SLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENI  192 (278)
T ss_dssp             CCTTCEEEETTCTTT--TT--------HHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSC
T ss_pred             CCCCCEEEEecccCC--HH--------HHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCC
Confidence            456899999999999  66        77888877667999999                  348899999999877788


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ||+|++++.       .....++..+.++|+|||+|++..+.
T Consensus       193 fD~Vi~~~p-------~~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          193 ADRILMGYV-------VRTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             EEEEEECCC-------SSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccEEEECCc-------hhHHHHHHHHHHHCCCCeEEEEEEee
Confidence            999998653       12246778888999999999997765

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.22  E-value=3.5e-11  Score=102.14  Aligned_cols=91  Identities=18%  Similarity=0.198  Sum_probs=69.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC---------------CceEEEEcccccc---C
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY---------------LILEVIQNKIENV---E  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~---------------~~i~~~~~d~~~~---~  104 (252)
                      ....++.+|||+|||+|  .+        +..+++. + ..+|+|+|+               .++.++++|+...   +
T Consensus        73 ~~~~~~~~vLDlG~G~G--~~--------~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~  142 (233)
T 2ipx_A           73 IHIKPGAKVLYLGAASG--TT--------VSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYR  142 (233)
T ss_dssp             CCCCTTCEEEEECCTTS--HH--------HHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGG
T ss_pred             ecCCCCCEEEEEcccCC--HH--------HHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhc
Confidence            45677899999999999  66        5666654 2 368999999               4789999999874   2


Q ss_pred             C-CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 L-PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~-~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      . .++||+|+++..     .......++..+.++|+|||++++....
T Consensus       143 ~~~~~~D~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          143 MLIAMVDVIFADVA-----QPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             GGCCCEEEEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccCCcEEEEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            2 378999999543     2233456688899999999999996543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.21  E-value=1.5e-10  Score=105.35  Aligned_cols=91  Identities=18%  Similarity=0.204  Sum_probs=72.3

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC----------CceEEEEccccccCCCCceeEEEec
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY----------LILEVIQNKIENVELPEKVDIIVSE  115 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~----------~~i~~~~~d~~~~~~~~~fDlIv~~  115 (252)
                      ...+.+|||||||+|  .+        +..+++. +..+++++|+          .+++++.+|+.+ +.+.. |+|++.
T Consensus       201 ~~~~~~vlDvG~G~G--~~--------~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~p~~-D~v~~~  268 (368)
T 3reo_A          201 FEGLTTIVDVGGGTG--AV--------ASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFD-GVPKG-DAIFIK  268 (368)
T ss_dssp             TTTCSEEEEETCTTS--HH--------HHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC-SEEEEE
T ss_pred             ccCCCEEEEeCCCcC--HH--------HHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCC-CCCCC-CEEEEe
Confidence            556789999999999  55        5555553 3357899997          579999999987 55544 999998


Q ss_pred             ccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       116 ~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .++|++. ..+...+|++++++|+|||+|++....
T Consensus       269 ~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          269 WICHDWS-DEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             SCGGGBC-HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             chhhcCC-HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            8877763 335778999999999999999987754

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.21  E-value=9.6e-11  Score=106.60  Aligned_cols=98  Identities=12%  Similarity=0.159  Sum_probs=75.2

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEccccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIEN  102 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~  102 (252)
                      +.......++.+|||||||+|  .+        +..+++.. ..+++++|+                 .+++++.+|+. 
T Consensus       194 l~~~~~~~~~~~vlDvG~G~G--~~--------~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~-  262 (369)
T 3gwz_A          194 VAAAYDFSGAATAVDIGGGRG--SL--------MAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFF-  262 (369)
T ss_dssp             HHHHSCCTTCSEEEEETCTTS--HH--------HHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-
T ss_pred             HHHhCCCccCcEEEEeCCCcc--HH--------HHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC-
Confidence            333344567789999999999  55        55555543 357999997                 46999999998 


Q ss_pred             cCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         103 VELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       103 ~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+.+..||+|++..+++++. ......+|++++++|+|||+|++....
T Consensus       263 ~~~p~~~D~v~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~  309 (369)
T 3gwz_A          263 ETIPDGADVYLIKHVLHDWD-DDDVVRILRRIATAMKPDSRLLVIDNL  309 (369)
T ss_dssp             TCCCSSCSEEEEESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred             CCCCCCceEEEhhhhhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            44455899999988887762 334568999999999999999997754

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.21  E-value=4e-11  Score=110.16  Aligned_cols=93  Identities=18%  Similarity=0.206  Sum_probs=76.2

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCC-Cce
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELP-EKV  109 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~-~~f  109 (252)
                      ..++.+|||+|||+|  .+        +..+++.+ .+|+++|+                ..+.++++|+.+...+ ++|
T Consensus       231 ~~~~~~VLDlGcG~G--~~--------~~~la~~g-~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~f  299 (381)
T 3dmg_A          231 GVRGRQVLDLGAGYG--AL--------TLPLARMG-AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARF  299 (381)
T ss_dssp             TTTTCEEEEETCTTS--TT--------HHHHHHTT-CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCE
T ss_pred             CCCCCEEEEEeeeCC--HH--------HHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCe
Confidence            457789999999999  66        66777776 48999999                2588999999998766 899


Q ss_pred             eEEEecccccccC--ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGFYLL--HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~--~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|+++...++..  .......++..+.++|+|||++++....
T Consensus       300 D~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~  342 (381)
T 3dmg_A          300 DIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP  342 (381)
T ss_dssp             EEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             EEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence            9999987755421  2357889999999999999999998654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.21  E-value=3.7e-11  Score=108.06  Aligned_cols=95  Identities=18%  Similarity=0.231  Sum_probs=76.1

Q ss_pred             CCCCC-CCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEccccccC-
Q psy9773          45 PNIFA-GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIENVE-  104 (252)
Q Consensus        45 ~~~~~-~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~-  104 (252)
                      ....+ +.+|||||||+|  .+        +..+++.. ..+++++|+                 .++.++.+|+...+ 
T Consensus       174 ~~~~~~~~~vlDvG~G~G--~~--------~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  243 (352)
T 3mcz_A          174 LGVFARARTVIDLAGGHG--TY--------LAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARN  243 (352)
T ss_dssp             CGGGTTCCEEEEETCTTC--HH--------HHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred             CCCcCCCCEEEEeCCCcC--HH--------HHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence            34445 789999999999  55        55555543 357999998                 36999999999887 


Q ss_pred             -CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 -LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 -~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       .++.||+|++..++|++ ...+...+|++++++|+|||+|++....
T Consensus       244 ~~~~~~D~v~~~~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (352)
T 3mcz_A          244 FEGGAADVVMLNDCLHYF-DAREAREVIGHAAGLVKPGGALLILTMT  289 (352)
T ss_dssp             GTTCCEEEEEEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cCCCCccEEEEecccccC-CHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence             66789999998887776 3335789999999999999999987754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.21  E-value=8.5e-11  Score=99.10  Aligned_cols=89  Identities=21%  Similarity=0.210  Sum_probs=67.7

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC---------------CceEEEEccccccC---
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY---------------LILEVIQNKIENVE---  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~---------------~~i~~~~~d~~~~~---  104 (252)
                      ....++.+|||+|||+|  .+        +..+++. |+ .+|+|+|+               .++.++++|+....   
T Consensus        69 ~~~~~~~~vLDlG~G~G--~~--------~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (227)
T 1g8a_A           69 FPIKPGKSVLYLGIASG--TT--------ASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYR  138 (227)
T ss_dssp             CCCCTTCEEEEETTTST--TH--------HHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGT
T ss_pred             cCCCCCCEEEEEeccCC--HH--------HHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhh
Confidence            34668899999999999  55        5666654 33 58999999               37899999998742   


Q ss_pred             -CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         105 -LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       105 -~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                       .+++||+|++...     .......++..+.++|+|||++++..
T Consensus       139 ~~~~~~D~v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          139 ALVPKVDVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             TTCCCEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccCCceEEEECCC-----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence             2368999998543     22234455999999999999999873

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.21  E-value=4e-11  Score=106.36  Aligned_cols=98  Identities=13%  Similarity=0.038  Sum_probs=69.7

Q ss_pred             HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEE-EEccccc
Q psy9773          36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEV-IQNKIEN  102 (252)
Q Consensus        36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~-~~~d~~~  102 (252)
                      .+..++.......++.+|||+|||||  .+        +..++..|+.+|+|+|+            .++.. ...++..
T Consensus        72 Kl~~~l~~~~~~~~g~~vLDiGcGTG--~~--------t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~  141 (291)
T 3hp7_A           72 KLEKALAVFNLSVEDMITIDIGASTG--GF--------TDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRY  141 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTS--HH--------HHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGG
T ss_pred             HHHHHHHhcCCCccccEEEecCCCcc--HH--------HHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCcee
Confidence            34455555445567889999999999  76        76777778789999999            22222 2345544


Q ss_pred             cC---CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         103 VE---LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       103 ~~---~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +.   ++ .+||+|++..+++      ++..+|..+.++|+|||.|++...
T Consensus       142 l~~~~l~~~~fD~v~~d~sf~------sl~~vL~e~~rvLkpGG~lv~lvk  186 (291)
T 3hp7_A          142 AEPVDFTEGLPSFASIDVSFI------SLNLILPALAKILVDGGQVVALVK  186 (291)
T ss_dssp             CCGGGCTTCCCSEEEECCSSS------CGGGTHHHHHHHSCTTCEEEEEEC
T ss_pred             cchhhCCCCCCCEEEEEeeHh------hHHHHHHHHHHHcCcCCEEEEEEC
Confidence            43   23 3499999866532      346789999999999999998743

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.21  E-value=4e-11  Score=108.90  Aligned_cols=92  Identities=13%  Similarity=0.162  Sum_probs=73.3

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEcccccc--CCCC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIENV--ELPE  107 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~--~~~~  107 (252)
                      ..+.+|||||||+|  .+        +..+++.. ..+++++|+                 .+++++.+|+...  ++++
T Consensus       178 ~~~~~vlDvG~G~G--~~--------~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~  247 (363)
T 3dp7_A          178 HHPKRLLDIGGNTG--KW--------ATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPT  247 (363)
T ss_dssp             GCCSEEEEESCTTC--HH--------HHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCC
T ss_pred             cCCCEEEEeCCCcC--HH--------HHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCC
Confidence            45689999999999  55        55555532 357999998                 3699999999986  3567


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +||+|++..+++++. ..+...+|++++++|+|||+|++....
T Consensus       248 ~~D~v~~~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (363)
T 3dp7_A          248 GFDAVWMSQFLDCFS-EEEVISILTRVAQSIGKDSKVYIMETL  289 (363)
T ss_dssp             CCSEEEEESCSTTSC-HHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CcCEEEEechhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence            899999988876653 335778999999999999999987654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.20  E-value=3.3e-11  Score=97.89  Aligned_cols=90  Identities=19%  Similarity=0.109  Sum_probs=68.9

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------CceEEEEccccccCCCCceeEEEeccccc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------LILEVIQNKIENVELPEKVDIIVSEWMGF  119 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~  119 (252)
                      .++.+|||+|||+|  .+        +..+++.+  +|+|+|+        .++.++++|+.+...+++||+|+++...+
T Consensus        22 ~~~~~vLD~GcG~G--~~--------~~~l~~~~--~v~gvD~s~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~   89 (170)
T 3q87_B           22 LEMKIVLDLGTSTG--VI--------TEQLRKRN--TVVSTDLNIRALESHRGGNLVRADLLCSINQESVDVVVFNPPYV   89 (170)
T ss_dssp             CCSCEEEEETCTTC--HH--------HHHHTTTS--EEEEEESCHHHHHTCSSSCEEECSTTTTBCGGGCSEEEECCCCB
T ss_pred             CCCCeEEEeccCcc--HH--------HHHHHhcC--cEEEEECCHHHHhcccCCeEEECChhhhcccCCCCEEEECCCCc
Confidence            45679999999999  77        77787776  8999999        57899999998843338999999977644


Q ss_pred             ccCCh------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         120 YLLHE------SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       120 ~l~~~------~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .....      .+...++..+.+.| |||++++....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~  125 (170)
T 3q87_B           90 PDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE  125 (170)
T ss_dssp             TTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred             cCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence            32211      13456777777888 99999987654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.20  E-value=8.6e-11  Score=103.04  Aligned_cols=91  Identities=19%  Similarity=0.214  Sum_probs=72.6

Q ss_pred             CCCEEEEEcCCc---CchhhhhccCccchHHHhhcC-CCcEEEeeC---------------CceEEEEccccccC-----
Q psy9773          49 AGKTVLDVGTGT---GKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------LILEVIQNKIENVE-----  104 (252)
Q Consensus        49 ~~~~VLDlGcGt---G~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------~~i~~~~~d~~~~~-----  104 (252)
                      ...+|||||||+   |  .+        +..+++.. ..+|+++|+               .++.++++|+.+..     
T Consensus        77 ~~~~vLDlGcG~pt~G--~~--------~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~  146 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQ--NT--------HEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNH  146 (274)
T ss_dssp             CCCEEEEETCCSCCSS--CH--------HHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHS
T ss_pred             CCCEEEEECCCCCCCC--hH--------HHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhcc
Confidence            447999999999   9  44        44444432 258999999               47899999997631     


Q ss_pred             ------CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 ------LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ------~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                            ++ .+||+|++..++|++... ++..+|.++.++|+|||+|++....
T Consensus       147 ~~~~~~~d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          147 PDVRRMIDFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             HHHHHHCCTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             chhhccCCCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEec
Confidence                  22 579999999988888655 6899999999999999999998765

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.20  E-value=4.8e-11  Score=104.44  Aligned_cols=90  Identities=12%  Similarity=0.040  Sum_probs=68.5

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------C------ceEEE--EccccccC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------L------ILEVI--QNKIENVE  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~------~i~~~--~~d~~~~~  104 (252)
                      ....++.+|||||||+|  .+        +..+++.  .+|+|+|+            .      ++.++  ++|+..++
T Consensus        70 ~~~~~g~~VLDlGcGtG--~~--------s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~  137 (265)
T 2oxt_A           70 GYVELTGRVVDLGCGRG--GW--------SYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP  137 (265)
T ss_dssp             TSCCCCEEEEEESCTTS--HH--------HHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred             CCCCCCCEEEEeCcCCC--HH--------HHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC
Confidence            45678899999999999  66        6777766  57999998            1      56788  88998876


Q ss_pred             CCCceeEEEecccccccCChh-hH---HHHHHHHhccccCCe--EEEeec
Q psy9773         105 LPEKVDIIVSEWMGFYLLHES-MI---DSVIFARDKFLKPEG--VMYPYK  148 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~-~~---~~~l~~l~~~LkpgG--~lv~~~  148 (252)
                       +++||+|+|+.+ ++..+.. +.   ..+|..+.++|+|||  .|++..
T Consensus       138 -~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          138 -VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             -CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence             578999999765 4432221 11   137888899999999  998854

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.20  E-value=2.1e-10  Score=104.43  Aligned_cols=91  Identities=16%  Similarity=0.207  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC----------CceEEEEccccccCCCCceeEEEec
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY----------LILEVIQNKIENVELPEKVDIIVSE  115 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~----------~~i~~~~~d~~~~~~~~~fDlIv~~  115 (252)
                      ..++.+|||||||+|  .+        +..+++. +..+++++|+          .+++++.+|+.+ +.+.. |+|++.
T Consensus       199 ~~~~~~vlDvG~G~G--~~--------~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~p~~-D~v~~~  266 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVG--AT--------VAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFK-EVPSG-DTILMK  266 (364)
T ss_dssp             TTTCSEEEEETCTTS--HH--------HHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC-SEEEEE
T ss_pred             ccCCCEEEEeCCCCC--HH--------HHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCC-CCCCC-CEEEeh
Confidence            566789999999999  55        5555553 3357899998          579999999987 66644 999998


Q ss_pred             ccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       116 ~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .++|++. ..+...+|++++++|+|||+|++....
T Consensus       267 ~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          267 WILHDWS-DQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             SCGGGSC-HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             HHhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            8877663 346789999999999999999987754

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.20  E-value=5.6e-11  Score=96.30  Aligned_cols=88  Identities=18%  Similarity=0.155  Sum_probs=70.2

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC-
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP-  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~-  106 (252)
                      ...++.+|||+|||+|  .+        +..++..+ .+++++|+                  .++.++++|+...... 
T Consensus        30 ~~~~~~~vldiG~G~G--~~--------~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   98 (192)
T 1l3i_A           30 EPGKNDVAVDVGCGTG--GV--------TLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI   98 (192)
T ss_dssp             CCCTTCEEEEESCTTS--HH--------HHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred             CCCCCCEEEEECCCCC--HH--------HHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC
Confidence            4678899999999999  66        66777766 68999999                  2688999998773222 


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++||+|++....      ..+..++..+.++|+|||++++..+.
T Consensus        99 ~~~D~v~~~~~~------~~~~~~l~~~~~~l~~gG~l~~~~~~  136 (192)
T 1l3i_A           99 PDIDIAVVGGSG------GELQEILRIIKDKLKPGGRIIVTAIL  136 (192)
T ss_dssp             CCEEEEEESCCT------TCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             CCCCEEEECCch------HHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            689999986542      24578999999999999999987654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.19  E-value=6.9e-11  Score=99.00  Aligned_cols=92  Identities=12%  Similarity=0.134  Sum_probs=68.6

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEccccccC--CC-
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIENVE--LP-  106 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~--~~-  106 (252)
                      .++.+|||+|||+|  .+        +..++... ..+++|+|+                 .++.++++|+..++  ++ 
T Consensus        40 ~~~~~vLDiGcG~G--~~--------~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  109 (214)
T 1yzh_A           40 NDNPIHVEVGSGKG--AF--------VSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFED  109 (214)
T ss_dssp             SCCCEEEEESCTTS--HH--------HHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCT
T ss_pred             CCCCeEEEEccCcC--HH--------HHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCC
Confidence            45789999999999  55        55565543 358999999                 47999999999876  44 


Q ss_pred             CceeEEEecccccccC--Chh---hHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLL--HES---MIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~--~~~---~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++||+|++++...+..  +..   ....++..+.++|+|||+|++.+.
T Consensus       110 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          110 GEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             TCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             CCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence            7899999865322110  000   236789999999999999999764

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.19  E-value=6.9e-11  Score=105.46  Aligned_cols=92  Identities=12%  Similarity=0.116  Sum_probs=66.0

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEc-cccccC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQN-KIENVE  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~-d~~~~~  104 (252)
                      ....++.+|||||||+|  .+        +..+++.  .+|+|+|+                   .++.++++ |+..++
T Consensus        78 ~~~~~g~~VLDlGcG~G--~~--------s~~la~~--~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~  145 (305)
T 2p41_A           78 NLVTPEGKVVDLGCGRG--GW--------SYYCGGL--KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP  145 (305)
T ss_dssp             TSSCCCEEEEEETCTTS--HH--------HHHHHTS--TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC
T ss_pred             CCCCCCCEEEEEcCCCC--HH--------HHHHHhc--CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC
Confidence            44567899999999999  66        6777766  36899875                   24778888 887764


Q ss_pred             CCCceeEEEecccccccCChhhH---HHHHHHHhccccCCeEEEeecc
Q psy9773         105 LPEKVDIIVSEWMGFYLLHESMI---DSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~~~---~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                       +.+||+|+|+.+.+...+..+.   ..+|..+.++|+|||.|++...
T Consensus       146 -~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~  192 (305)
T 2p41_A          146 -PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL  192 (305)
T ss_dssp             -CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             -cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence             3689999997654311111121   2578888899999999998543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.19  E-value=2.1e-11  Score=102.15  Aligned_cols=92  Identities=15%  Similarity=-0.044  Sum_probs=67.6

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVE  104 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~  104 (252)
                      ..++.+|||+|||+|  .+        +..++..+ ..+|+|+|+                     .++.++++|+.+++
T Consensus        25 ~~~~~~vLDiGcG~G--~~--------~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~   94 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDG--KH--------PYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP   94 (218)
T ss_dssp             TTSSEEEEEESCTTC--HH--------HHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC
T ss_pred             ccCCCEEEEecCCCC--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC
Confidence            467889999999999  55        55666653 357999999                     26899999999988


Q ss_pred             CC-CceeEEEecccccccC--ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         105 LP-EKVDIIVSEWMGFYLL--HESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       105 ~~-~~fDlIv~~~~~~~l~--~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++ ++ |.|++........  +..+...++..+.++|+|||+|++...
T Consensus        95 ~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (218)
T 3mq2_A           95 PLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN  141 (218)
T ss_dssp             SCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence            77 44 7776422111111  223457899999999999999999654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.19  E-value=8.4e-11  Score=107.74  Aligned_cols=101  Identities=11%  Similarity=0.024  Sum_probs=74.2

Q ss_pred             HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC--------------------CceEEEEc
Q psy9773          40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY--------------------LILEVIQN   98 (252)
Q Consensus        40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~--------------------~~i~~~~~   98 (252)
                      .+.......++.+|||+|||+|  .+        +..+++.+ ..+|+|+|+                    .++.++.+
T Consensus       213 ~ll~~l~~~~~~~VLDlGcG~G--~~--------s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~  282 (375)
T 4dcm_A          213 FFMQHLPENLEGEIVDLGCGNG--VI--------GLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN  282 (375)
T ss_dssp             HHHHTCCCSCCSEEEEETCTTC--HH--------HHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEEC
T ss_pred             HHHHhCcccCCCeEEEEeCcch--HH--------HHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEec
Confidence            3444445566689999999999  66        67777764 368999999                    14788999


Q ss_pred             cccccCCCCceeEEEecccccccCC--hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          99 KIENVELPEKVDIIVSEWMGFYLLH--ESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        99 d~~~~~~~~~fDlIv~~~~~~~l~~--~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+.....+++||+|++++.++....  ......++..+.++|+|||++++..+.
T Consensus       283 D~~~~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          283 NALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             STTTTCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             hhhccCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            9988544478999999876553211  223457899999999999999997643

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.18  E-value=6.9e-11  Score=109.00  Aligned_cols=101  Identities=18%  Similarity=0.218  Sum_probs=74.4

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCC------cCchhhhhccCccchHHHhhc-CCCcEEEeeC--------CceEEEEcc
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTG------TGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY--------LILEVIQNK   99 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcG------tG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~--------~~i~~~~~d   99 (252)
                      ..|...+..  ...++.+|||||||      +|+..+        . ++... +..+|+|+|+        .+++|+++|
T Consensus       204 ~~Ye~lL~~--l~~~~~rVLDIGCG~~~~~~TGG~Sl--------~-la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GD  272 (419)
T 3sso_A          204 PHYDRHFRD--YRNQQVRVLEIGVGGYKHPEWGGGSL--------R-MWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGD  272 (419)
T ss_dssp             HHHHHHHGG--GTTSCCEEEEECCSCTTCSSCCCHHH--------H-HHHHHCTTCEEEEEESSCCGGGCBTTEEEEECC
T ss_pred             HHHHHHHHh--hcCCCCEEEEEecCCCcCCCCCHHHH--------H-HHHHhCCCCEEEEEECCHHHhhcCCCcEEEEec
Confidence            345554432  23457899999999      774444        2 22222 3358999999        689999999


Q ss_pred             ccccCCC-------CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         100 IENVELP-------EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~~~~-------~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.++++.       ++||+|+++.. ++   ..+...+|..+.++|||||+|++....
T Consensus       273 a~dlpf~~~l~~~d~sFDlVisdgs-H~---~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          273 QNDAEFLDRIARRYGPFDIVIDDGS-HI---NAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             TTCHHHHHHHHHHHCCEEEEEECSC-CC---HHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             ccccchhhhhhcccCCccEEEECCc-cc---chhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            9987654       78999999643 33   367889999999999999999997653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.18  E-value=7.7e-11  Score=103.75  Aligned_cols=90  Identities=14%  Similarity=0.121  Sum_probs=68.4

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------C------ceEEE--EccccccC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------L------ILEVI--QNKIENVE  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~------~i~~~--~~d~~~~~  104 (252)
                      ....++.+|||||||+|  .+        +..+++.  .+|+|+|+            .      ++.++  ++|+..++
T Consensus        78 ~~~~~g~~VLDlGcGtG--~~--------s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~  145 (276)
T 2wa2_A           78 GGVELKGTVVDLGCGRG--SW--------SYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME  145 (276)
T ss_dssp             TSCCCCEEEEEESCTTC--HH--------HHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC
T ss_pred             CCCCCCCEEEEeccCCC--HH--------HHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC
Confidence            45667899999999999  66        6777766  47999998            1      57888  89998876


Q ss_pred             CCCceeEEEecccccccCChh-hH---HHHHHHHhccccCCe--EEEeec
Q psy9773         105 LPEKVDIIVSEWMGFYLLHES-MI---DSVIFARDKFLKPEG--VMYPYK  148 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~-~~---~~~l~~l~~~LkpgG--~lv~~~  148 (252)
                       +++||+|+|+.+ ++..+.. +.   ..+|..+.++|+|||  .|++..
T Consensus       146 -~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          146 -PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             -CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence             578999999765 4432211 11   137888999999999  998854

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.18  E-value=8e-11  Score=94.81  Aligned_cols=84  Identities=21%  Similarity=0.200  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC-C
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP-E  107 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~-~  107 (252)
                      ...++.+|||+|||+|  .+        +..++. +..+++|+|+                 .++.++++|+.+ +++ +
T Consensus        32 ~~~~~~~vLdiG~G~G--~~--------~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~   99 (183)
T 2yxd_A           32 NLNKDDVVVDVGCGSG--GM--------TVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKL   99 (183)
T ss_dssp             CCCTTCEEEEESCCCS--HH--------HHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGC
T ss_pred             CCCCCCEEEEeCCCCC--HH--------HHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCC
Confidence            4567889999999999  66        666666 4568999999                 368999999987 444 7


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +||+|++..+       .++..++..+.++  |||++++..+.
T Consensus       100 ~~D~i~~~~~-------~~~~~~l~~~~~~--~gG~l~~~~~~  133 (183)
T 2yxd_A          100 EFNKAFIGGT-------KNIEKIIEILDKK--KINHIVANTIV  133 (183)
T ss_dssp             CCSEEEECSC-------SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred             CCcEEEECCc-------ccHHHHHHHHhhC--CCCEEEEEecc
Confidence            8999999664       4567888888877  99999998754

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.17  E-value=1.2e-10  Score=103.65  Aligned_cols=92  Identities=12%  Similarity=0.169  Sum_probs=74.0

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccCCCCce
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      .++.+|||+|||+|  .+        +..+++. +..+++++|+                 .++.++.+|+.+.+++..|
T Consensus       164 ~~~~~vlDvG~G~G--~~--------~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  233 (335)
T 2r3s_A          164 IEPLKVLDISASHG--LF--------GIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDY  233 (335)
T ss_dssp             CCCSEEEEETCTTC--HH--------HHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCE
T ss_pred             CCCCEEEEECCCcC--HH--------HHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCC
Confidence            66789999999999  55        5555554 2357999997                 3699999999987766669


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|++..+++++ ...+...++.++.++|+|||++++....
T Consensus       234 D~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~  273 (335)
T 2r3s_A          234 DLVLLPNFLHHF-DVATCEQLLRKIKTALAVEGKVIVFDFI  273 (335)
T ss_dssp             EEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cEEEEcchhccC-CHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence            999998887766 3346789999999999999999887654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.17  E-value=9.3e-11  Score=97.81  Aligned_cols=87  Identities=17%  Similarity=0.007  Sum_probs=66.8

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-C-CcEEEeeC-----------------CceEEEEccccccCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-P-LDHYAPQY-----------------LILEVIQNKIENVEL  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~-~~v~gvD~-----------------~~i~~~~~d~~~~~~  105 (252)
                      ....++.+|||+|||+|  .+        +..++..+ + .+|+++|+                 .++.++.+|+.....
T Consensus        73 ~~~~~~~~vLdiG~G~G--~~--------~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~  142 (215)
T 2yxe_A           73 LDLKPGMKVLEIGTGCG--YH--------AAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE  142 (215)
T ss_dssp             TTCCTTCEEEEECCTTS--HH--------HHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG
T ss_pred             hCCCCCCEEEEECCCcc--HH--------HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence            45678899999999999  55        55555543 2 58999999                 358899999865433


Q ss_pred             -CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 -PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 -~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       .++||+|++..+.+++.         ..+.++|+|||++++..+.
T Consensus       143 ~~~~fD~v~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          143 PLAPYDRIYTTAAGPKIP---------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             GGCCEEEEEESSBBSSCC---------HHHHHTEEEEEEEEEEESS
T ss_pred             CCCCeeEEEECCchHHHH---------HHHHHHcCCCcEEEEEECC
Confidence             37899999977765552         3678999999999998764

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.17  E-value=1.4e-10  Score=101.97  Aligned_cols=58  Identities=14%  Similarity=0.252  Sum_probs=47.5

Q ss_pred             ceEEEEccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          92 ILEVIQNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        92 ~i~~~~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++.|.++|+.+.+++  ++||+|+|..++.++ .......++..+++.|+|||+|++....
T Consensus       195 ~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~lg~sE  254 (274)
T 1af7_A          195 YVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAGHSE  254 (274)
T ss_dssp             TEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred             cCeEEecccCCCCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence            377889999886554  789999998888777 3345689999999999999999997653

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.17  E-value=2.1e-10  Score=104.35  Aligned_cols=91  Identities=16%  Similarity=0.158  Sum_probs=71.4

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------CceEEEEccccccCCCCceeEEEec
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------LILEVIQNKIENVELPEKVDIIVSE  115 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------~~i~~~~~d~~~~~~~~~fDlIv~~  115 (252)
                      ..++.+|||||||+|  .+        +..+++.++ .+++++|+          .+++++.+|+.. +.+. ||+|++.
T Consensus       207 ~~~~~~vLDvG~G~G--~~--------~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~-~D~v~~~  274 (372)
T 1fp1_D          207 FEGISTLVDVGGGSG--RN--------LELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-SVPQ-GDAMILK  274 (372)
T ss_dssp             TTTCSEEEEETCTTS--HH--------HHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCC-EEEEEEE
T ss_pred             cCCCCEEEEeCCCCc--HH--------HHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCccc-CCCC-CCEEEEe
Confidence            556789999999999  55        555555433 46888896          579999999987 5555 9999998


Q ss_pred             ccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       116 ~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .++|++.. .....+|++++++|+|||+|++....
T Consensus       275 ~~lh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e~~  308 (372)
T 1fp1_D          275 AVCHNWSD-EKCIEFLSNCHKALSPNGKVIIVEFI  308 (372)
T ss_dssp             SSGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccCCH-HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            88777632 23459999999999999999988654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.17  E-value=2.3e-10  Score=102.12  Aligned_cols=91  Identities=14%  Similarity=0.109  Sum_probs=72.1

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccCCCCc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~  108 (252)
                      ... .+|||+|||+|  .+        +..+++. +..+++++|+                 .+++++.+|+.+ +.+++
T Consensus       166 ~~~-~~vlDvG~G~G--~~--------~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~  233 (334)
T 2ip2_A          166 FRG-RSFVDVGGGSG--EL--------TKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSN  233 (334)
T ss_dssp             CTT-CEEEEETCTTC--HH--------HHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSS
T ss_pred             CCC-CEEEEeCCCch--HH--------HHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCC
Confidence            344 89999999999  55        5555554 2357999997                 369999999987 55678


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ||+|++..+++++. ......++.++.++|+|||++++....
T Consensus       234 ~D~v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          234 GDIYLLSRIIGDLD-EAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             CSEEEEESCGGGCC-HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CCEEEEchhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            99999988877663 335669999999999999999998754

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.16  E-value=2.6e-11  Score=102.59  Aligned_cols=79  Identities=18%  Similarity=0.147  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccc-cccCCC--CceeE
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKI-ENVELP--EKVDI  111 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~-~~~~~~--~~fDl  111 (252)
                      ..++.+|||+|||+|  .+        +..++..+ .+|+|+|+            .++.++++|+ ..++++  ++||+
T Consensus        46 ~~~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~  114 (226)
T 3m33_A           46 LTPQTRVLEAGCGHG--PD--------AARFGPQA-ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGL  114 (226)
T ss_dssp             CCTTCEEEEESCTTS--HH--------HHHHGGGS-SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEE
T ss_pred             CCCCCeEEEeCCCCC--HH--------HHHHHHcC-CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEE
Confidence            367899999999999  66        67777776 47999999            5699999999 455554  78999


Q ss_pred             EEecccccccCChhhHHHHHHHHhccccCCeEEE
Q psy9773         112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMY  145 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv  145 (252)
                      |++.         .++..++..+.++|+|||+|+
T Consensus       115 v~~~---------~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          115 IVSR---------RGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EEEE---------SCCSGGGGGHHHHEEEEEEEE
T ss_pred             EEeC---------CCHHHHHHHHHHHcCCCcEEE
Confidence            9984         245577889999999999999

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.16  E-value=4.8e-11  Score=101.24  Aligned_cols=90  Identities=16%  Similarity=0.125  Sum_probs=66.5

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEcccccc-C--CC-
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQNKIENV-E--LP-  106 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~d~~~~-~--~~-  106 (252)
                      .+.+|||||||+|  .+        +..++...+ .+|+|+|+                 .++.++++|+..+ +  ++ 
T Consensus        34 ~~~~vLDiGcG~G--~~--------~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~  103 (218)
T 3dxy_A           34 EAPVTLEIGFGMG--AS--------LVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPD  103 (218)
T ss_dssp             CCCEEEEESCTTC--HH--------HHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCT
T ss_pred             CCCeEEEEeeeCh--HH--------HHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCC
Confidence            6689999999999  55        556665433 57999999                 4799999999885 2  33 


Q ss_pred             CceeEEEecccccccCChhhH------HHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMI------DSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~------~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++||.|++.....+. .....      ..++..+.++|+|||+|++.+.
T Consensus       104 ~~~d~v~~~~~~p~~-~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          104 NSLRMVQLFFPDPWH-KARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             TCEEEEEEESCCCCC-SGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CChheEEEeCCCCcc-chhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence            899999985322211 11111      2589999999999999999874

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.16  E-value=2.9e-12  Score=109.00  Aligned_cols=87  Identities=15%  Similarity=0.004  Sum_probs=70.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCce
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      .++.+|||+|||+|  .+        +..++..+ .+|+|+|+                  .++.++++|+.+++..++|
T Consensus        77 ~~~~~vLD~gcG~G--~~--------~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  145 (241)
T 3gdh_A           77 FKCDVVVDAFCGVG--GN--------TIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKA  145 (241)
T ss_dssp             SCCSEEEETTCTTS--HH--------HHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCC
T ss_pred             cCCCEEEECccccC--HH--------HHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCC
Confidence            37899999999999  66        66777776 68999999                  2789999999988755899


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      |+|+++...++.   ......+..+.++|+|||++++..
T Consensus       146 D~v~~~~~~~~~---~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          146 DVVFLSPPWGGP---DYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             SEEEECCCCSSG---GGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             CEEEECCCcCCc---chhhhHHHHHHhhcCCcceeHHHH
Confidence            999998775554   334446677889999999987765

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.16  E-value=6.3e-11  Score=94.70  Aligned_cols=87  Identities=9%  Similarity=-0.112  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------C-ceEEEEccccccCC-----CC
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------L-ILEVIQNKIENVEL-----PE  107 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~-~i~~~~~d~~~~~~-----~~  107 (252)
                      ++.+|||+|||+|  .+        +..++..++. ++|+|+               . ++.++++|+.+...     .+
T Consensus        41 ~~~~vLD~GcG~G--~~--------~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  109 (171)
T 1ws6_A           41 RRGRFLDPFAGSG--AV--------GLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGE  109 (171)
T ss_dssp             TCCEEEEETCSSC--HH--------HHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTC
T ss_pred             CCCeEEEeCCCcC--HH--------HHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCC
Confidence            7789999999999  66        6677777655 999999               1 68999999887421     13


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHh--ccccCCeEEEeecccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARD--KFLKPEGVMYPYKCIL  151 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~--~~LkpgG~lv~~~~~~  151 (252)
                      +||+|+++...+  .   ....++..+.  ++|+|||++++..+..
T Consensus       110 ~~D~i~~~~~~~--~---~~~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          110 RFTVAFMAPPYA--M---DLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             CEEEEEECCCTT--S---CTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             ceEEEEECCCCc--h---hHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence            799999976533  2   2334455555  9999999999987753

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.16  E-value=7.2e-11  Score=116.94  Aligned_cols=91  Identities=12%  Similarity=0.001  Sum_probs=74.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC-----------------------CceEEEEccccc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY-----------------------LILEVIQNKIEN  102 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~-----------------------~~i~~~~~d~~~  102 (252)
                      .++.+|||||||+|  .+        +..+++.+.  .+|+|+|+                       .++.++++|+..
T Consensus       720 ~~g~rVLDVGCGTG--~l--------ai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d  789 (950)
T 3htx_A          720 SSASTLVDFGCGSG--SL--------LDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE  789 (950)
T ss_dssp             SCCSEEEEETCSSS--HH--------HHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred             cCCCEEEEECCCCC--HH--------HHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence            47889999999999  66        677777653  58999999                       148999999999


Q ss_pred             cCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         103 VELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       103 ~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++++ ++||+|++..+++++.. +....++..+.++|+|| ++++..+.
T Consensus       790 Lp~~d~sFDlVV~~eVLeHL~d-p~l~~~L~eI~RvLKPG-~LIISTPN  836 (950)
T 3htx_A          790 FDSRLHDVDIGTCLEVIEHMEE-DQACEFGEKVLSLFHPK-LLIVSTPN  836 (950)
T ss_dssp             CCTTSCSCCEEEEESCGGGSCH-HHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred             CCcccCCeeEEEEeCchhhCCh-HHHHHHHHHHHHHcCCC-EEEEEecC
Confidence            9877 89999999888887733 24557999999999999 77777654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.16  E-value=1.5e-10  Score=104.80  Aligned_cols=93  Identities=17%  Similarity=0.169  Sum_probs=72.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~~~  106 (252)
                      ....++.+|||||||+|  .+        +..++... ..+++++|+                 .++.++.+|+.+ +.+
T Consensus       178 ~~~~~~~~vlDvG~G~G--~~--------~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~  246 (374)
T 1qzz_A          178 YDWSAVRHVLDVGGGNG--GM--------LAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP  246 (374)
T ss_dssp             SCCTTCCEEEEETCTTS--HH--------HHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS
T ss_pred             CCCCCCCEEEEECCCcC--HH--------HHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC
Confidence            34567789999999999  55        55555543 257999996                 279999999976 344


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ..||+|++..+++++. ......++.++.++|+|||++++...
T Consensus       247 ~~~D~v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          247 VTADVVLLSFVLLNWS-DEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             CCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCCEEEEeccccCCC-HHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            4599999988877763 22456899999999999999998765

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.15  E-value=1.1e-10  Score=101.34  Aligned_cols=96  Identities=14%  Similarity=0.089  Sum_probs=71.0

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-------------C--------ceEEEEccccc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-------------L--------ILEVIQNKIEN  102 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-------------~--------~i~~~~~d~~~  102 (252)
                      ....++.+|||+|||+|  .+        +..++... ..+++|+|+             .        ++.++++|+.+
T Consensus        32 ~~~~~~~~VLDlG~G~G--~~--------~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~  101 (260)
T 2ozv_A           32 VADDRACRIADLGAGAG--AA--------GMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTL  101 (260)
T ss_dssp             CCCCSCEEEEECCSSSS--HH--------HHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTC
T ss_pred             hcccCCCEEEEeCChHh--HH--------HHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHH
Confidence            44567889999999999  66        66666654 358999999             2        38999999988


Q ss_pred             cC-------CC-CceeEEEeccccccc---------------CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         103 VE-------LP-EKVDIIVSEWMGFYL---------------LHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       103 ~~-------~~-~~fDlIv~~~~~~~l---------------~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.       ++ ++||+|++++..+..               .....+..++..+.++|+|||+|++..+.
T Consensus       102 ~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  172 (260)
T 2ozv_A          102 RAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP  172 (260)
T ss_dssp             CHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             HhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence            72       33 789999997532211               01124778999999999999999987653

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.15  E-value=8.2e-11  Score=101.82  Aligned_cols=86  Identities=19%  Similarity=0.221  Sum_probs=68.9

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------Cc--eEEEEccccccCCCCcee
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LI--LEVIQNKIENVELPEKVD  110 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~--i~~~~~d~~~~~~~~~fD  110 (252)
                      ..++.+|||+|||+|  .+        +..+++.|+ +|+|+|+              ..  +.++++|+......++||
T Consensus       118 ~~~~~~VLDiGcG~G--~l--------~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD  186 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSG--VL--------AIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFD  186 (254)
T ss_dssp             CCTTCEEEEETCTTS--HH--------HHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEE
T ss_pred             cCCCCEEEEecCCCc--HH--------HHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCC
Confidence            467899999999999  77        777888876 8999999              11  788999887742237899


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +|+++...      ..+..++..+.++|+|||+++++..
T Consensus       187 ~Vv~n~~~------~~~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          187 LLVANLYA------ELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             EEEEECCH------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECCcH------HHHHHHHHHHHHHcCCCCEEEEEee
Confidence            99986542      2357889999999999999999754

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.15  E-value=1.1e-10  Score=100.09  Aligned_cols=93  Identities=13%  Similarity=0.047  Sum_probs=68.5

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc---CCCcEEEeeC--------------C-------c----------
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV---HPLDHYAPQY--------------L-------I----------   92 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~---g~~~v~gvD~--------------~-------~----------   92 (252)
                      ..++.+|||+|||+|  .+        +..++..   +..+|+|+|+              .       +          
T Consensus        49 ~~~~~~vLD~gcGsG--~~--------~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~  118 (250)
T 1o9g_A           49 GDGPVTLWDPCCGSG--YL--------LTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER  118 (250)
T ss_dssp             CCSCEEEEETTCTTS--HH--------HHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEECCCCCC--HH--------HHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhh
Confidence            346689999999999  55        5555543   2357999999              2       1          


Q ss_pred             ---------------eE-------------EEEccccccCC-----C-CceeEEEecccccccCC------hhhHHHHHH
Q psy9773          93 ---------------LE-------------VIQNKIENVEL-----P-EKVDIIVSEWMGFYLLH------ESMIDSVIF  132 (252)
Q Consensus        93 ---------------i~-------------~~~~d~~~~~~-----~-~~fDlIv~~~~~~~l~~------~~~~~~~l~  132 (252)
                                     +.             ++++|+.....     . .+||+|+|++.......      ......++.
T Consensus       119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~  198 (250)
T 1o9g_A          119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLR  198 (250)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHH
Confidence                           56             99999987642     3 58999999765443322      246778999


Q ss_pred             HHhccccCCeEEEeecc
Q psy9773         133 ARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       133 ~l~~~LkpgG~lv~~~~  149 (252)
                      .+.++|+|||+|++...
T Consensus       199 ~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          199 SLASALPAHAVIAVTDR  215 (250)
T ss_dssp             HHHHHSCTTCEEEEEES
T ss_pred             HHHHhcCCCcEEEEeCc
Confidence            99999999999998443

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.15  E-value=1.1e-10  Score=104.03  Aligned_cols=87  Identities=16%  Similarity=-0.008  Sum_probs=68.4

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC-----------------CceEEEEccccccCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY-----------------LILEVIQNKIENVEL  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~-----------------~~i~~~~~d~~~~~~  105 (252)
                      ....++.+|||+|||+|  .+        +..+++.+.  .+|+|+|+                 .++.++.+|+.+...
T Consensus        71 l~~~~~~~VLDiGcG~G--~~--------~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~  140 (317)
T 1dl5_A           71 VGLDKGMRVLEIGGGTG--YN--------AAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP  140 (317)
T ss_dssp             TTCCTTCEEEEECCTTS--HH--------HHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred             cCCCCcCEEEEecCCch--HH--------HHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc
Confidence            45678899999999999  66        666666542  35999999                 358999999988644


Q ss_pred             C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      + ++||+|++..+.+++.         ..+.++|+|||++++....
T Consensus       141 ~~~~fD~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          141 EFSPYDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             GGCCEEEEEECSBBSCCC---------HHHHHHEEEEEEEEEEBCB
T ss_pred             cCCCeEEEEEcCCHHHHH---------HHHHHhcCCCcEEEEEECC
Confidence            3 7899999988766552         4567899999999998654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.14  E-value=7.1e-11  Score=100.52  Aligned_cols=87  Identities=13%  Similarity=0.131  Sum_probs=68.3

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------CceEEEEccccccCC--
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------LILEVIQNKIENVEL--  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~--  105 (252)
                      ..++.+|||+|||+|  ..        +..++... ..+|+++|+                  .++.++++|+.....  
T Consensus        69 ~~~~~~vLDiG~G~G--~~--------~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (232)
T 3ntv_A           69 MNNVKNILEIGTAIG--YS--------SMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV  138 (232)
T ss_dssp             HHTCCEEEEECCSSS--HH--------HHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHH
T ss_pred             hcCCCEEEEEeCchh--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhh
Confidence            356789999999999  55        55666532 368999999                  379999999987633  


Q ss_pred             -CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 -PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 -~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                       .++||+|++...      ......++..+.++|+|||+|++...
T Consensus       139 ~~~~fD~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          139 NDKVYDMIFIDAA------KAQSKKFFEIYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             TTSCEEEEEEETT------SSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred             ccCCccEEEEcCc------HHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence             478999997432      24567899999999999999998654

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.14  E-value=6.4e-11  Score=99.79  Aligned_cols=90  Identities=10%  Similarity=0.115  Sum_probs=66.9

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEcccccc-C-
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENV-E-  104 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~-~-  104 (252)
                      ..++.+|||+|||+|  ..        +..+++. + ..+|+++|+                  .+++++++|+... + 
T Consensus        56 ~~~~~~vLdiG~G~G--~~--------~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  125 (221)
T 3u81_A           56 EYSPSLVLELGAYCG--YS--------AVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQ  125 (221)
T ss_dssp             HHCCSEEEEECCTTS--HH--------HHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG
T ss_pred             hcCCCEEEEECCCCC--HH--------HHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHH
Confidence            356789999999999  55        5566653 1 358999999                  3699999998654 1 


Q ss_pred             CC-----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LP-----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~-----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+     ++||+|++....++.   .....++..+ ++|+|||+|++....
T Consensus       126 ~~~~~~~~~fD~V~~d~~~~~~---~~~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          126 LKKKYDVDTLDMVFLDHWKDRY---LPDTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             TTTTSCCCCCSEEEECSCGGGH---HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             HHHhcCCCceEEEEEcCCcccc---hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence            12     589999996643333   4455677777 999999999998765

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.14  E-value=5.8e-11  Score=99.22  Aligned_cols=87  Identities=15%  Similarity=0.074  Sum_probs=66.4

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------------CceEEEEccccccCCCC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------------LILEVIQNKIENVELPE  107 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~  107 (252)
                      ..+..+|||+|||+|  .+        ++.++.. +..+++|+|+                  .++.+  +|......++
T Consensus        47 l~~~~~VLDlGCG~G--pl--------Al~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~  114 (200)
T 3fzg_A           47 IKHVSSILDFGCGFN--PL--------ALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKG  114 (200)
T ss_dssp             SCCCSEEEEETCTTH--HH--------HHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTS
T ss_pred             cCCCCeEEEecCCCC--HH--------HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCC
Confidence            366889999999999  77        6676554 2248999999                  13444  6766655568


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +||+|++..++|++   ++....+.++.+.|+|||+||---
T Consensus       115 ~~DvVLa~k~LHlL---~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          115 TYDVVFLLKMLPVL---KQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             EEEEEEEETCHHHH---HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             CcChhhHhhHHHhh---hhhHHHHHHHHHHhCCCCEEEEeC
Confidence            89999998888888   555666678999999999987543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.13  E-value=1.1e-10  Score=98.29  Aligned_cols=92  Identities=12%  Similarity=0.135  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccC--CC-
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVE--LP-  106 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~--~~-  106 (252)
                      ..+.+|||||||+|  .+        +..++.. +..+++|+|+                 .++.++++|+..++  ++ 
T Consensus        37 ~~~~~vLDiGcG~G--~~--------~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~  106 (213)
T 2fca_A           37 NDNPIHIEVGTGKG--QF--------ISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEP  106 (213)
T ss_dssp             SCCCEEEEECCTTS--HH--------HHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCT
T ss_pred             CCCceEEEEecCCC--HH--------HHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCc
Confidence            35789999999999  55        5555554 2358999999                 47899999998864  44 


Q ss_pred             CceeEEEecccccccC--Chh---hHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLL--HES---MIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~--~~~---~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++||.|++.....+..  +..   ....++..+.++|+|||.|++.+.
T Consensus       107 ~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td  154 (213)
T 2fca_A          107 GEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  154 (213)
T ss_dssp             TSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             CCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence            7899998743211110  000   136789999999999999998763

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.13  E-value=7.2e-11  Score=106.47  Aligned_cols=93  Identities=18%  Similarity=0.156  Sum_probs=72.0

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------------CceEEEEccccccCCCCce
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      ..++.+|||+|||+|  .+        +..+++.++ .+|+++|+                ..+.++.+|+.... +++|
T Consensus       194 ~~~~~~VLDlGcG~G--~~--------~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~-~~~f  262 (343)
T 2pjd_A          194 PHTKGKVLDVGCGAG--VL--------SVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV-KGRF  262 (343)
T ss_dssp             TTCCSBCCBTTCTTS--HH--------HHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC-CSCE
T ss_pred             cCCCCeEEEecCccC--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc-cCCe
Confidence            345679999999999  66        667777654 48999999                23577888887654 5789


Q ss_pred             eEEEecccccccC--ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGFYLL--HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~--~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|++++.+++..  +......++..+.++|+|||.+++..+.
T Consensus       263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            9999987654321  2346789999999999999999998654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.13  E-value=3.2e-10  Score=97.46  Aligned_cols=89  Identities=19%  Similarity=0.204  Sum_probs=64.9

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC---------------CceEEEEccccccCC--
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY---------------LILEVIQNKIENVEL--  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~---------------~~i~~~~~d~~~~~~--  105 (252)
                      ....+|.+|||+|||+|  .+        +..++.. + ..+|+|+|+               .++.++++|+.....  
T Consensus        72 ~~l~~g~~VLDlG~GtG--~~--------t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~  141 (232)
T 3id6_C           72 NPIRKGTKVLYLGAASG--TT--------ISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYK  141 (232)
T ss_dssp             CSCCTTCEEEEETCTTS--HH--------HHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTT
T ss_pred             cCCCCCCEEEEEeecCC--HH--------HHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhh
Confidence            34778999999999999  55        4555542 3 248999999               578999999986532  


Q ss_pred             --CCceeEEEecccccccCChhhHHH-HHHHHhccccCCeEEEeecc
Q psy9773         106 --PEKVDIIVSEWMGFYLLHESMIDS-VIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 --~~~fDlIv~~~~~~~l~~~~~~~~-~l~~l~~~LkpgG~lv~~~~  149 (252)
                        .++||+|+++..   .   ++... ++..+.++|+|||+|+++..
T Consensus       142 ~~~~~~D~I~~d~a---~---~~~~~il~~~~~~~LkpGG~lvisik  182 (232)
T 3id6_C          142 SVVENVDVLYVDIA---Q---PDQTDIAIYNAKFFLKVNGDMLLVIK  182 (232)
T ss_dssp             TTCCCEEEEEECCC---C---TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccccceEEEEecCC---C---hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence              268999998643   1   23333 44556669999999998853

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.13  E-value=2.2e-11  Score=100.71  Aligned_cols=92  Identities=15%  Similarity=0.058  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------------CceEEEEccccccCCC----
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------------LILEVIQNKIENVELP----  106 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------------~~i~~~~~d~~~~~~~----  106 (252)
                      .++.+|||+|||+|  .+        +..++..++ .+++|+|+                .++.++++|+.+....    
T Consensus        29 ~~~~~vLDiG~G~G--~~--------~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~   98 (215)
T 4dzr_A           29 PSGTRVIDVGTGSG--CI--------AVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER   98 (215)
T ss_dssp             CTTEEEEEEESSBC--HH--------HHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEecCCHh--HH--------HHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence            67889999999999  66        666666543 48999999                1466777777663222    


Q ss_pred             -CceeEEEecccccccCC-----------------------hhhHHHHHHHHhccccCCeE-EEeecc
Q psy9773         107 -EKVDIIVSEWMGFYLLH-----------------------ESMIDSVIFARDKFLKPEGV-MYPYKC  149 (252)
Q Consensus       107 -~~fDlIv~~~~~~~l~~-----------------------~~~~~~~l~~l~~~LkpgG~-lv~~~~  149 (252)
                       ++||+|++++..+....                       ...+..++..+.++|+|||+ +++..+
T Consensus        99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A           99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence             78999999654221110                       00127888999999999999 666543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.12  E-value=4.3e-10  Score=101.58  Aligned_cols=94  Identities=16%  Similarity=0.140  Sum_probs=73.7

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~~~  106 (252)
                      ....++.+|||||||+|  .+        +..+++.. ..+++++|+                 .++.++.+|+.+.+++
T Consensus       186 ~~~~~~~~vLDvG~G~G--~~--------~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  255 (359)
T 1x19_A          186 AKLDGVKKMIDVGGGIG--DI--------SAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP  255 (359)
T ss_dssp             CCCTTCCEEEEESCTTC--HH--------HHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC
T ss_pred             cCCCCCCEEEEECCccc--HH--------HHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC
Confidence            34567789999999999  55        55655543 357999997                 3599999999988665


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      . +|+|++..+++++.. .....+|.++.++|+|||+|++....
T Consensus       256 ~-~D~v~~~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e~~  297 (359)
T 1x19_A          256 E-ADAVLFCRILYSANE-QLSTIMCKKAFDAMRSGGRLLILDMV  297 (359)
T ss_dssp             C-CSEEEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred             C-CCEEEEechhccCCH-HHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            4 399999888777632 24889999999999999999887643

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.12  E-value=1.4e-10  Score=99.28  Aligned_cols=92  Identities=21%  Similarity=0.256  Sum_probs=71.3

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKI  100 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~  100 (252)
                      +.......++.+|||+|||+|  .+        +..++.. + ..+++++|+                  .++.++++|+
T Consensus        85 i~~~~~~~~~~~vldiG~G~G--~~--------~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  154 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGSG--AL--------TLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDI  154 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTTS--HH--------HHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCG
T ss_pred             HHHhhCCCCCCEEEEecCCch--HH--------HHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECch
Confidence            333356788999999999999  55        5566655 3 368999999                  2399999999


Q ss_pred             cccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         101 ENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       101 ~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+....++||+|+++.        +++..++..+.++|+|||++++..+.
T Consensus       155 ~~~~~~~~~D~v~~~~--------~~~~~~l~~~~~~L~~gG~l~~~~~~  196 (255)
T 3mb5_A          155 YEGIEEENVDHVILDL--------PQPERVVEHAAKALKPGGFFVAYTPC  196 (255)
T ss_dssp             GGCCCCCSEEEEEECS--------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             hhccCCCCcCEEEECC--------CCHHHHHHHHHHHcCCCCEEEEEECC
Confidence            8764447899998843        24457889999999999999988754

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.12  E-value=4.2e-10  Score=98.05  Aligned_cols=92  Identities=18%  Similarity=0.090  Sum_probs=68.6

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCCCCce
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      .++.+|||+|||+|  .+        +..++. .+..+++|+|+                 .++.++++|+.....+++|
T Consensus       108 ~~~~~vLDlG~GsG--~~--------~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~f  177 (276)
T 2b3t_A          108 EQPCRILDLGTGTG--AI--------ALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQF  177 (276)
T ss_dssp             SSCCEEEEETCTTS--HH--------HHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCE
T ss_pred             cCCCEEEEecCCcc--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCc
Confidence            56789999999999  55        555554 33468999999                 3689999999875435789


Q ss_pred             eEEEeccccccc----------CCh------------hhHHHHHHHHhccccCCeEEEeecc
Q psy9773         110 DIIVSEWMGFYL----------LHE------------SMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       110 DlIv~~~~~~~l----------~~~------------~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |+|++++.....          .+.            ..+..++..+.++|+|||++++..+
T Consensus       178 D~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~  239 (276)
T 2b3t_A          178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG  239 (276)
T ss_dssp             EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             cEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            999997432111          011            3567899999999999999999754

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.12  E-value=4.1e-11  Score=102.82  Aligned_cols=96  Identities=18%  Similarity=0.151  Sum_probs=61.0

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEE-Ecccccc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVI-QNKIENV  103 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~-~~d~~~~  103 (252)
                      +.+++........+.+|||||||||  .+        +..+++.|+.+|+|+|+            .++... ..++...
T Consensus        25 L~~~L~~~~~~~~g~~VLDiGcGtG--~~--------t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~   94 (232)
T 3opn_A           25 LEKALKEFHLEINGKTCLDIGSSTG--GF--------TDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNA   94 (232)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTS--HH--------HHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGC
T ss_pred             HHHHHHHcCCCCCCCEEEEEccCCC--HH--------HHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEe
Confidence            4455555445567789999999999  66        66777777778999999            122111 1122221


Q ss_pred             C---CCC-ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         104 E---LPE-KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       104 ~---~~~-~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .   ++. .||.+.+..+...      +..+|..+.++|+|||+|++..
T Consensus        95 ~~~~~~~~~~d~~~~D~v~~~------l~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A           95 VLADFEQGRPSFTSIDVSFIS------LDLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             CGGGCCSCCCSEEEECCSSSC------GGGTHHHHHHHSCTTCEEEEEE
T ss_pred             CHhHcCcCCCCEEEEEEEhhh------HHHHHHHHHHhccCCCEEEEEE
Confidence            1   111 2455544333222      2578999999999999999864

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.11  E-value=2.6e-10  Score=102.84  Aligned_cols=93  Identities=18%  Similarity=0.234  Sum_probs=71.7

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEccccccCCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQNKIENVELPE  107 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~d~~~~~~~~  107 (252)
                      ...++.+|||||||+|  .+        +..++..++ .+++++|+                 .++.++.+|+.+ +.+.
T Consensus       180 ~~~~~~~vLDvG~G~G--~~--------~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~  248 (360)
T 1tw3_A          180 DWTNVRHVLDVGGGKG--GF--------AAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR  248 (360)
T ss_dssp             CCTTCSEEEEETCTTS--HH--------HHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS
T ss_pred             CCccCcEEEEeCCcCc--HH--------HHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC
Confidence            4566789999999999  55        555555433 57899994                 279999999976 3444


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .||+|++..+++++. ......++.++.++|+|||++++....
T Consensus       249 ~~D~v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          249 KADAIILSFVLLNWP-DHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             CEEEEEEESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CccEEEEcccccCCC-HHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            599999988877663 234568999999999999999987654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.11  E-value=4.6e-10  Score=98.48  Aligned_cols=102  Identities=17%  Similarity=0.228  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-C---------------------
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-L---------------------   91 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-~---------------------   91 (252)
                      ...+...+.......++.+|||||||+|  .+        +..+++.|+.+|+|+|+ .                     
T Consensus        64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G--~~--------~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~  133 (281)
T 3bzb_A           64 ARALADTLCWQPELIAGKTVCELGAGAG--LV--------SIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSS  133 (281)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEETTCTTS--HH--------HHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-----
T ss_pred             HHHHHHHHHhcchhcCCCeEEEeccccc--HH--------HHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhccc
Confidence            3445555655444567889999999999  66        67777777668999998 1                     


Q ss_pred             ------ceEEEEcccccc----C---CCCceeEEEecccccccCChhhHHHHHHHHhcccc---C--CeEEEeec
Q psy9773          92 ------ILEVIQNKIENV----E---LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLK---P--EGVMYPYK  148 (252)
Q Consensus        92 ------~i~~~~~d~~~~----~---~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~Lk---p--gG~lv~~~  148 (252)
                            ++.+...++.+.    .   ..++||+|++..+++   +..++..++..+.++|+   |  ||++++..
T Consensus       134 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~---~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          134 ETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLS---FHQAHDALLRSVKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             -----CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCS---CGGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred             ccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCccc---ChHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence                  355555554332    1   236899999866543   45788899999999999   9  99887654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.09  E-value=1.1e-10  Score=98.02  Aligned_cols=88  Identities=15%  Similarity=0.053  Sum_probs=67.3

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEccccccCCC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~~~~  106 (252)
                      ..++.+|||+|||+|  ..        +..++.. + ..+++++|+                  .+++++++|+......
T Consensus        56 ~~~~~~vLdiG~G~G--~~--------~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  125 (223)
T 3duw_A           56 IQGARNILEIGTLGG--YS--------TIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQ  125 (223)
T ss_dssp             HHTCSEEEEECCTTS--HH--------HHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             hhCCCEEEEecCCcc--HH--------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence            356789999999999  55        5555554 2 258999999                  3599999999765221


Q ss_pred             ------CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 ------EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ------~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                            ++||+|++...      ......++..+.++|+|||++++....
T Consensus       126 ~~~~~~~~fD~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          126 IENEKYEPFDFIFIDAD------KQNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             HHHTTCCCCSEEEECSC------GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             HHhcCCCCcCEEEEcCC------cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence                  57999998543      235678999999999999999987654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.09  E-value=3.1e-10  Score=102.61  Aligned_cols=105  Identities=16%  Similarity=0.080  Sum_probs=78.2

Q ss_pred             HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC-----------------CceEEE
Q psy9773          36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY-----------------LILEVI   96 (252)
Q Consensus        36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~-----------------~~i~~~   96 (252)
                      .+...+.......++.+|||+|||+|  ++        +..++..+  ..+++|+|+                 .++.++
T Consensus       190 ~la~~l~~~~~~~~~~~vLD~gcGsG--~~--------~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~  259 (354)
T 3tma_A          190 VLAQALLRLADARPGMRVLDPFTGSG--TI--------ALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFL  259 (354)
T ss_dssp             HHHHHHHHHTTCCTTCCEEESSCTTS--HH--------HHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEE
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCcC--HH--------HHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence            34444555466778899999999999  66        66666643  367999999                 268999


Q ss_pred             EccccccCCC-CceeEEEecccccccCC-----hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          97 QNKIENVELP-EKVDIIVSEWMGFYLLH-----ESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        97 ~~d~~~~~~~-~~fDlIv~~~~~~~l~~-----~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++|+.+++.+ ..||+|++++.......     ......++..+.++|+|||++++.++.
T Consensus       260 ~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          260 RADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             ECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             eCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            9999998766 67899999764322111     112467899999999999999998764

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.07  E-value=4.3e-10  Score=96.39  Aligned_cols=85  Identities=8%  Similarity=0.016  Sum_probs=65.3

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhc-----CCCcEEEeeC------------CceEEEEcccccc---CC-C-
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-----HPLDHYAPQY------------LILEVIQNKIENV---EL-P-  106 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-----g~~~v~gvD~------------~~i~~~~~d~~~~---~~-~-  106 (252)
                      ++.+|||||||+|  ..        +..+++.     ...+|+|+|+            .++.++++|+...   +. . 
T Consensus        81 ~~~~VLDiG~GtG--~~--------t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~  150 (236)
T 2bm8_A           81 RPRTIVELGVYNG--GS--------LAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLRE  150 (236)
T ss_dssp             CCSEEEEECCTTS--HH--------HHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSS
T ss_pred             CCCEEEEEeCCCC--HH--------HHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhcc
Confidence            4679999999999  44        4555553     2368999999            3699999999884   32 2 


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhc-cccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDK-FLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~-~LkpgG~lv~~~~  149 (252)
                      .+||+|++... +     .++..+|..+.+ +|+|||+|++...
T Consensus       151 ~~fD~I~~d~~-~-----~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          151 MAHPLIFIDNA-H-----ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             SCSSEEEEESS-C-----SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             CCCCEEEECCc-h-----HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            37999998543 1     256789999997 9999999999764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.07  E-value=2.4e-10  Score=97.16  Aligned_cols=85  Identities=21%  Similarity=0.205  Sum_probs=64.1

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC--
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP--  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~--  106 (252)
                      ...++.+|||+|||+|  .+        +..+++.+..+|+++|+                 .++.++.+|+ ..+++  
T Consensus        88 ~~~~~~~vLdiG~G~G--~~--------~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~  156 (235)
T 1jg1_A           88 NLKPGMNILEVGTGSG--WN--------AALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPK  156 (235)
T ss_dssp             TCCTTCCEEEECCTTS--HH--------HHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGG
T ss_pred             CCCCCCEEEEEeCCcC--HH--------HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCC
Confidence            4677889999999999  65        55666543267999998                 3688999997 33333  


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+||+|++..+.+++   .      ..+.++|+|||++++..+.
T Consensus       157 ~~fD~Ii~~~~~~~~---~------~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          157 APYDVIIVTAGAPKI---P------EPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             CCEEEEEECSBBSSC---C------HHHHHTEEEEEEEEEEECS
T ss_pred             CCccEEEECCcHHHH---H------HHHHHhcCCCcEEEEEEec
Confidence            469999997765444   2      2567899999999998764

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.07  E-value=2.2e-10  Score=99.87  Aligned_cols=93  Identities=15%  Similarity=0.138  Sum_probs=69.0

Q ss_pred             HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC--------------C----ceEEEEcc
Q psy9773          40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY--------------L----ILEVIQNK   99 (252)
Q Consensus        40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~--------------~----~i~~~~~d   99 (252)
                      .+.......++.+|||+|||+|  .+        +..+++.  +..+|+++|+              .    ++.++++|
T Consensus       101 ~~~~~~~~~~~~~VLD~G~G~G--~~--------~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d  170 (275)
T 1yb2_A          101 YIIMRCGLRPGMDILEVGVGSG--NM--------SSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD  170 (275)
T ss_dssp             -----CCCCTTCEEEEECCTTS--HH--------HHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSC
T ss_pred             HHHHHcCCCCcCEEEEecCCCC--HH--------HHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECc
Confidence            3444456778899999999999  55        5566554  2368999999              2    58899999


Q ss_pred             ccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         100 IENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +......++||+|+++.        +++..++..+.++|+|||++++..+.
T Consensus       171 ~~~~~~~~~fD~Vi~~~--------~~~~~~l~~~~~~LkpgG~l~i~~~~  213 (275)
T 1yb2_A          171 IADFISDQMYDAVIADI--------PDPWNHVQKIASMMKPGSVATFYLPN  213 (275)
T ss_dssp             TTTCCCSCCEEEEEECC--------SCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             hhccCcCCCccEEEEcC--------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            98743337899998832        34567899999999999999998865

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.07  E-value=2.5e-10  Score=96.93  Aligned_cols=100  Identities=7%  Similarity=0.074  Sum_probs=71.6

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC-----------------C--ce
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY-----------------L--IL   93 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~-----------------~--~i   93 (252)
                      ..+...+.......++.+|||+|||+|  ..        +..+++. + ..+|+++|+                 .  ++
T Consensus        42 ~~~l~~l~~~~~~~~~~~vLdiG~G~G--~~--------~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i  111 (221)
T 3dr5_A           42 GQLLTTLAATTNGNGSTGAIAITPAAG--LV--------GLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRV  111 (221)
T ss_dssp             HHHHHHHHHHSCCTTCCEEEEESTTHH--HH--------HHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGE
T ss_pred             HHHHHHHHHhhCCCCCCCEEEEcCCch--HH--------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcE
Confidence            334444443333334559999999999  54        5555552 2 358999999                 2  69


Q ss_pred             EEEEccccccC--C-CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          94 EVIQNKIENVE--L-PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        94 ~~~~~d~~~~~--~-~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +++++|+.++.  . +++||+|++...      ......++..+.++|+|||+|++....
T Consensus       112 ~~~~gda~~~l~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~  165 (221)
T 3dr5_A          112 RFLLSRPLDVMSRLANDSYQLVFGQVS------PMDLKALVDAAWPLLRRGGALVLADAL  165 (221)
T ss_dssp             EEECSCHHHHGGGSCTTCEEEEEECCC------TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred             EEEEcCHHHHHHHhcCCCcCeEEEcCc------HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            99999987762  3 378999998542      235667899999999999999997654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.07  E-value=3.3e-10  Score=97.75  Aligned_cols=83  Identities=13%  Similarity=0.169  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------CceEEEEccccccCCC-CceeEEE
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------LILEVIQNKIENVELP-EKVDIIV  113 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------~~i~~~~~d~~~~~~~-~~fDlIv  113 (252)
                      .++.+|||+|||+|  .+        +..++.. +..+++|+|+            .++.+..+|+..++++ ++||+|+
T Consensus        84 ~~~~~vLdiG~G~G--~~--------~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~  153 (269)
T 1p91_A           84 DKATAVLDIGCGEG--YY--------THAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAII  153 (269)
T ss_dssp             TTCCEEEEETCTTS--TT--------HHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEE
T ss_pred             CCCCEEEEECCCCC--HH--------HHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEE
Confidence            57789999999999  55        5555554 2357999999            4688999999988766 7899999


Q ss_pred             ecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       114 ~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +..+.          .++..+.++|+|||++++..+.
T Consensus       154 ~~~~~----------~~l~~~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          154 RIYAP----------CKAEELARVVKPGGWVITATPG  180 (269)
T ss_dssp             EESCC----------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred             EeCCh----------hhHHHHHHhcCCCcEEEEEEcC
Confidence            85431          2478889999999999988754

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.07  E-value=1.9e-10  Score=98.94  Aligned_cols=88  Identities=10%  Similarity=0.077  Sum_probs=67.6

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEcccccc-CC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENV-EL  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~-~~  105 (252)
                      ..++.+|||||||+|  ..        +..++.. + ..+|+++|+                  .++.++.+|+... +.
T Consensus        61 ~~~~~~VLdiG~G~G--~~--------~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~  130 (248)
T 3tfw_A           61 LTQAKRILEIGTLGG--YS--------TIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLES  130 (248)
T ss_dssp             HHTCSEEEEECCTTS--HH--------HHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHT
T ss_pred             hcCCCEEEEecCCch--HH--------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHh
Confidence            356789999999999  55        5555553 2 368999999                  3799999999764 22


Q ss_pred             -C--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 -P--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 -~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       .  ++||+|++...      ......++..+.++|+|||+|++....
T Consensus       131 ~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          131 LGECPAFDLIFIDAD------KPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             CCSCCCCSEEEECSC------GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             cCCCCCeEEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence             2  48999998442      346678899999999999999987654

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.06  E-value=1.3e-10  Score=97.65  Aligned_cols=88  Identities=15%  Similarity=0.052  Sum_probs=67.4

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEccccccCC-
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENVEL-  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~~~-  105 (252)
                      ..++.+|||+|||+|  ..        +..++.. + ..+|+++|+                  .++.++++|+..... 
T Consensus        62 ~~~~~~vLdiG~G~G--~~--------~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  131 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTG--YS--------AIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAE  131 (225)
T ss_dssp             HHTCSEEEEECCTTS--HH--------HHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             hhCCCEEEEeCCcch--HH--------HHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHH
Confidence            356789999999999  55        5565553 2 368999999                  359999999966521 


Q ss_pred             -C-----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 -P-----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 -~-----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       .     ++||+|++...      ......++..+.++|+|||+|++....
T Consensus       132 ~~~~~~~~~fD~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          132 LIHAGQAWQYDLIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             HHTTTCTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             hhhccCCCCccEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence             1     68999987442      346778999999999999999987654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.06  E-value=1.5e-10  Score=99.58  Aligned_cols=88  Identities=14%  Similarity=0.045  Sum_probs=67.7

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEccccccCC-
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENVEL-  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~~~-  105 (252)
                      ..++.+|||+|||+|  ..        +..+++. + ..+|+++|+                  .++.++.+|+..... 
T Consensus        58 ~~~~~~VLDiG~G~G--~~--------t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~  127 (242)
T 3r3h_A           58 LTRAKKVLELGTFTG--YS--------ALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHS  127 (242)
T ss_dssp             HHTCSEEEEEESCCS--HH--------HHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             hcCcCEEEEeeCCcC--HH--------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence            356789999999999  54        5555552 2 358999999                  379999999976522 


Q ss_pred             ------CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 ------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ------~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                            .++||+|++...      ......++..+.++|+|||+|++....
T Consensus       128 ~~~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          128 LLNEGGEHQFDFIFIDAD------KTNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             HHHHHCSSCEEEEEEESC------GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             HhhccCCCCEeEEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence                  378999998542      346778899999999999999997654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.05  E-value=6.3e-10  Score=100.31  Aligned_cols=91  Identities=12%  Similarity=0.141  Sum_probs=71.2

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC----------CceEEEEccccccCCCCceeEEEec
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY----------LILEVIQNKIENVELPEKVDIIVSE  115 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~----------~~i~~~~~d~~~~~~~~~fDlIv~~  115 (252)
                      ..++.+|||||||+|  .+        +..+++. +..+++++|+          .+++++.+|+.. +.+. ||+|++.
T Consensus       186 ~~~~~~vlDvG~G~G--~~--------~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~p~-~D~v~~~  253 (352)
T 1fp2_A          186 FDGLESIVDVGGGTG--TT--------AKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFT-SIPN-ADAVLLK  253 (352)
T ss_dssp             HTTCSEEEEETCTTS--HH--------HHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTT-CCCC-CSEEEEE
T ss_pred             cccCceEEEeCCCcc--HH--------HHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccC-CCCC-ccEEEee
Confidence            346689999999999  55        5555554 2347999998          468999999976 4444 9999998


Q ss_pred             ccccccCChhhHHHHHHHHhccccC---CeEEEeeccc
Q psy9773         116 WMGFYLLHESMIDSVIFARDKFLKP---EGVMYPYKCI  150 (252)
Q Consensus       116 ~~~~~l~~~~~~~~~l~~l~~~Lkp---gG~lv~~~~~  150 (252)
                      .++|++.. .....+|++++++|+|   ||+|++....
T Consensus       254 ~~lh~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          254 YILHNWTD-KDCLRILKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             SCGGGSCH-HHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             hhhccCCH-HHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence            88887732 2455999999999999   9999988764

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.05  E-value=2.5e-10  Score=102.99  Aligned_cols=92  Identities=12%  Similarity=-0.009  Sum_probs=71.4

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------C--ceEEEEccccccCC---
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------L--ILEVIQNKIENVEL---  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~--~i~~~~~d~~~~~~---  105 (252)
                      .++.+|||+|||+|  .+        +..++..|+ +|+++|+                 .  ++.++++|+.++..   
T Consensus       152 ~~~~~VLDlgcGtG--~~--------sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~  220 (332)
T 2igt_A          152 DRPLKVLNLFGYTG--VA--------SLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE  220 (332)
T ss_dssp             SSCCEEEEETCTTC--HH--------HHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH
T ss_pred             CCCCcEEEcccccC--HH--------HHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHH
Confidence            46789999999999  66        777777776 8999999                 1  48999999987642   


Q ss_pred             --CCceeEEEeccccccc-------CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 --PEKVDIIVSEWMGFYL-------LHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 --~~~fDlIv~~~~~~~l-------~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                        .++||+|++++..+..       ....++..++..+.++|+|||+|++....
T Consensus       221 ~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          221 RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             hcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence              3689999996642221       12346778999999999999998876644

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.05  E-value=4e-10  Score=103.45  Aligned_cols=95  Identities=15%  Similarity=0.072  Sum_probs=73.2

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------C--ceEEEEccccccCC---
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------L--ILEVIQNKIENVEL---  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~--~i~~~~~d~~~~~~---  105 (252)
                      .++.+|||+|||+|  .+        ++.++..|+.+|+|+|+                 .  ++.++++|+.++..   
T Consensus       211 ~~~~~VLDl~cGtG--~~--------sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~  280 (385)
T 2b78_A          211 AAGKTVLNLFSYTA--AF--------SVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYAR  280 (385)
T ss_dssp             TBTCEEEEETCTTT--HH--------HHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHH
T ss_pred             cCCCeEEEEeeccC--HH--------HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHH
Confidence            57789999999999  77        77888777778999999                 2  78999999977421   


Q ss_pred             --CCceeEEEeccccc-----ccC-ChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         106 --PEKVDIIVSEWMGF-----YLL-HESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       106 --~~~fDlIv~~~~~~-----~l~-~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                        ..+||+|++++..+     ... ....+..++..+.++|+|||+|++++++..
T Consensus       281 ~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~  335 (385)
T 2b78_A          281 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  335 (385)
T ss_dssp             HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             HhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence              25899999965432     111 123566788888999999999999887533

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.05  E-value=2.2e-09  Score=97.21  Aligned_cols=99  Identities=13%  Similarity=0.156  Sum_probs=75.5

Q ss_pred             HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------------CceEEEEccccc
Q psy9773          40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------------LILEVIQNKIEN  102 (252)
Q Consensus        40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------------~~i~~~~~d~~~  102 (252)
                      .+..........+|+|||||+|  .+        +..+++..+ .+++..|.                .+++++.+|+..
T Consensus       170 ~~~~~~~~~~~~~v~DvGgG~G--~~--------~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~  239 (353)
T 4a6d_A          170 SVLTAFDLSVFPLMCDLGGGAG--AL--------AKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFK  239 (353)
T ss_dssp             HHHHSSCGGGCSEEEEETCTTS--HH--------HHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTT
T ss_pred             HHHHhcCcccCCeEEeeCCCCC--HH--------HHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCcccc
Confidence            3444344566689999999999  55        555555433 46777787                689999999987


Q ss_pred             cCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         103 VELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       103 ~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+.+ .+|+|++..++|.++ ..+...+|+++++.|+|||++++....
T Consensus       240 ~~~~-~~D~~~~~~vlh~~~-d~~~~~iL~~~~~al~pgg~lli~e~~  285 (353)
T 4a6d_A          240 DPLP-EADLYILARVLHDWA-DGKCSHLLERIYHTCKPGGGILVIESL  285 (353)
T ss_dssp             SCCC-CCSEEEEESSGGGSC-HHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CCCC-CceEEEeeeecccCC-HHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence            6544 579999999887763 335788999999999999999987754

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.05  E-value=2.5e-10  Score=96.72  Aligned_cols=87  Identities=13%  Similarity=0.149  Sum_probs=67.6

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------CceEEEEcccccc-C-C
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------LILEVIQNKIENV-E-L  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------~~i~~~~~d~~~~-~-~  105 (252)
                      ..++.+|||+|||+|  .+        +..+++.. ..+|+++|+                  .++.++.+|+... + .
T Consensus        52 ~~~~~~vLdiG~G~G--~~--------~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  121 (233)
T 2gpy_A           52 MAAPARILEIGTAIG--YS--------AIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKL  121 (233)
T ss_dssp             HHCCSEEEEECCTTS--HH--------HHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHH
T ss_pred             ccCCCEEEEecCCCc--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhc
Confidence            356789999999999  55        55555542 368999999                  2589999999875 2 1


Q ss_pred             --CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 --PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 --~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                        +++||+|++...   .   .+...++..+.++|+|||++++...
T Consensus       122 ~~~~~fD~I~~~~~---~---~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          122 ELYPLFDVLFIDAA---K---GQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             TTSCCEEEEEEEGG---G---SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             ccCCCccEEEECCC---H---HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence              368999998553   2   2577899999999999999999754

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.04  E-value=7e-10  Score=103.45  Aligned_cols=91  Identities=13%  Similarity=0.050  Sum_probs=67.7

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC--------------------------CceEEEE
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY--------------------------LILEVIQ   97 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~--------------------------~~i~~~~   97 (252)
                      ....++.+|||||||+|  .+        +..++. .++.+|+|+|+                          .++.+++
T Consensus       238 l~l~~g~~VLDLGCGsG--~l--------a~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~  307 (433)
T 1u2z_A          238 CQLKKGDTFMDLGSGVG--NC--------VVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  307 (433)
T ss_dssp             TTCCTTCEEEEESCTTS--HH--------HHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             cCCCCCCEEEEeCCCcC--HH--------HHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence            45678899999999999  55        556665 45567999997                          2567777


Q ss_pred             cccccc--CC---CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          98 NKIENV--EL---PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        98 ~d~~~~--~~---~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +|....  ++   .++||+|+++..+    ..+++..+|..+.+.|+|||+|++..+
T Consensus       308 gD~~~~~~~~~~~~~~FDvIvvn~~l----~~~d~~~~L~el~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          308 KKSFVDNNRVAELIPQCDVILVNNFL----FDEDLNKKVEKILQTAKVGCKIISLKS  360 (433)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCTT----CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             cCccccccccccccCCCCEEEEeCcc----ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence            754321  11   2689999986543    225788889999999999999998753

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.04  E-value=2.7e-10  Score=99.66  Aligned_cols=88  Identities=20%  Similarity=0.184  Sum_probs=70.5

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEccccccCCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIENVELPE  107 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~  107 (252)
                      ...++.+|||+|||+|  .+        +..+++.+ ..+|+|+|+                 .++.++++|+.+++..+
T Consensus       116 ~~~~~~~VLDlgcG~G--~~--------s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~  185 (272)
T 3a27_A          116 ISNENEVVVDMFAGIG--YF--------TIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKD  185 (272)
T ss_dssp             SCCTTCEEEETTCTTT--TT--------HHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTT
T ss_pred             hcCCCCEEEEecCcCC--HH--------HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccC
Confidence            4678899999999999  66        66777753 458999999                 46889999999883346


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +||+|++++..       .+..++..+.+.|+|||++++++..
T Consensus       186 ~~D~Vi~d~p~-------~~~~~l~~~~~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          186 VADRVIMGYVH-------KTHKFLDKTFEFLKDRGVIHYHETV  221 (272)
T ss_dssp             CEEEEEECCCS-------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CceEEEECCcc-------cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            89999986642       4456788888999999999988765

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.04  E-value=5.5e-10  Score=94.85  Aligned_cols=87  Identities=15%  Similarity=0.055  Sum_probs=69.4

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC-C
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE-L  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~-~  105 (252)
                      ....++.+|||+|||+|  .+        +..+++. ..+++++|+                  .++.++.+|+.+.. .
T Consensus        87 ~~~~~~~~vldiG~G~G--~~--------~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  155 (248)
T 2yvl_A           87 LNLNKEKRVLEFGTGSG--AL--------LAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP  155 (248)
T ss_dssp             TTCCTTCEEEEECCTTS--HH--------HHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC
T ss_pred             cCCCCCCEEEEeCCCcc--HH--------HHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC
Confidence            45678899999999999  66        6666666 468999998                  36889999998865 3


Q ss_pred             CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .++||+|+++.        +++..++..+.++|+|||++++..+.
T Consensus       156 ~~~~D~v~~~~--------~~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          156 EGIFHAAFVDV--------REPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             TTCBSEEEECS--------SCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             CCcccEEEECC--------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            37899998732        24456788889999999999998874

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.04  E-value=6.6e-10  Score=91.79  Aligned_cols=87  Identities=16%  Similarity=0.073  Sum_probs=62.6

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCCCceeEEE
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELPEKVDIIV  113 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~~~fDlIv  113 (252)
                      ...++.+|||+|||+|  .+        +..++..+..+|+|+|+            .++.++++|+..++  ++||+|+
T Consensus        48 ~~~~~~~vlD~gcG~G--~~--------~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~--~~~D~v~  115 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNG--IL--------ACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS--GKYDTWI  115 (200)
T ss_dssp             TSSBTSEEEEETCTTC--HH--------HHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC--CCEEEEE
T ss_pred             CCCCCCEEEEEeCCcc--HH--------HHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC--CCeeEEE
Confidence            3457789999999999  66        66777666667999999            26899999999875  7899999


Q ss_pred             ecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       114 ~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +++..++.... ....++..+.+.|  |+ +++..
T Consensus       116 ~~~p~~~~~~~-~~~~~l~~~~~~~--g~-~~~~~  146 (200)
T 1ne2_A          116 MNPPFGSVVKH-SDRAFIDKAFETS--MW-IYSIG  146 (200)
T ss_dssp             ECCCC--------CHHHHHHHHHHE--EE-EEEEE
T ss_pred             ECCCchhccCc-hhHHHHHHHHHhc--Cc-EEEEE
Confidence            98876665432 2346788888887  44 44433

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.04  E-value=3.9e-10  Score=96.33  Aligned_cols=88  Identities=22%  Similarity=0.172  Sum_probs=70.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEccccccC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENVE  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~~  104 (252)
                      ....++.+|||+|||+|  .+        +..+++. + ..+++++|+                  .++.++++|+.+.+
T Consensus        92 ~~~~~~~~vLdiG~G~G--~~--------~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~  161 (258)
T 2pwy_A           92 LDLAPGMRVLEAGTGSG--GL--------TLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE  161 (258)
T ss_dssp             TTCCTTCEEEEECCTTS--HH--------HHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC
T ss_pred             cCCCCCCEEEEECCCcC--HH--------HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC
Confidence            45778899999999999  65        5566664 4 368999998                  15889999999886


Q ss_pred             CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++ ++||+|+++.        +++..++..+.++|+|||++++..+.
T Consensus       162 ~~~~~~D~v~~~~--------~~~~~~l~~~~~~L~~gG~l~~~~~~  200 (258)
T 2pwy_A          162 LEEAAYDGVALDL--------MEPWKVLEKAALALKPDRFLVAYLPN  200 (258)
T ss_dssp             CCTTCEEEEEEES--------SCGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred             CCCCCcCEEEECC--------cCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            65 7899998832        24457889999999999999998765

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.04  E-value=4.4e-10  Score=96.35  Aligned_cols=93  Identities=10%  Similarity=0.071  Sum_probs=64.2

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------------CceEEEEccccc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------------LILEVIQNKIEN  102 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------------~~i~~~~~d~~~  102 (252)
                      ...+.+|||||||+|  .+        +..++... ...++|+|+                       .++.++++|+..
T Consensus        44 ~~~~~~vLDiGcG~G--~~--------~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~  113 (235)
T 3ckk_A           44 AQAQVEFADIGCGYG--GL--------LVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMK  113 (235)
T ss_dssp             --CCEEEEEETCTTC--HH--------HHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTT
T ss_pred             cCCCCeEEEEccCCc--HH--------HHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHH
Confidence            356679999999999  55        55555543 357999999                       258899999987


Q ss_pred             -cC--CC-CceeEEEecccccccC--Chh---hHHHHHHHHhccccCCeEEEeecc
Q psy9773         103 -VE--LP-EKVDIIVSEWMGFYLL--HES---MIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       103 -~~--~~-~~fDlIv~~~~~~~l~--~~~---~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                       ++  ++ ++||.|++.....+..  |..   ....+|..+.++|+|||+|++.+.
T Consensus       114 ~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          114 HLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD  169 (235)
T ss_dssp             CHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             hhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence             54  44 8899998743211110  000   114789999999999999998764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.04  E-value=9.1e-10  Score=97.62  Aligned_cols=108  Identities=11%  Similarity=-0.004  Sum_probs=72.5

Q ss_pred             HHHHHHHHH-hCCCCCCCCEEEEEcCCcCchh--hhhccCccchHHHh-hcC-CCcEEEeeC----CceEE-EEcccccc
Q psy9773          34 NEAYRAAIC-DNPNIFAGKTVLDVGTGTGKSI--LLQGHGVDHHSFCT-KVH-PLDHYAPQY----LILEV-IQNKIENV  103 (252)
Q Consensus        34 ~~~~~~~l~-~~~~~~~~~~VLDlGcGtG~~~--ll~~~~v~~s~~~a-~~g-~~~v~gvD~----~~i~~-~~~d~~~~  103 (252)
                      +..+...+. ......++.+|||+|||+|...  -        +..++ ..+ ..+|+|+|+    .++.+ +++|+.++
T Consensus        47 y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpG--------s~~~a~~~~~~~~V~gvDis~~v~~v~~~i~gD~~~~  118 (290)
T 2xyq_A           47 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPG--------TAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATV  118 (290)
T ss_dssp             HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHH--------HHHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGC
T ss_pred             HHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcH--------HHHHHHHcCCCCEEEEEECCCCCCCCEEEEECccccC
Confidence            333444442 2345678899999999663111  1        21222 333 257999999    46889 99999988


Q ss_pred             CCCCceeEEEecccccc--------cCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         104 ELPEKVDIIVSEWMGFY--------LLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       104 ~~~~~fDlIv~~~~~~~--------l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +++++||+|+++...+.        ......+..++..+.++|+|||+|++...
T Consensus       119 ~~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~  172 (290)
T 2xyq_A          119 HTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT  172 (290)
T ss_dssp             CCSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            77788999999653221        01122356889999999999999998653

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.03  E-value=8.4e-10  Score=94.71  Aligned_cols=89  Identities=17%  Similarity=0.063  Sum_probs=72.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------------CceEEEEccccccCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------------~~i~~~~~d~~~~~~~  106 (252)
                      ...++.+|||+|||+|  .+        +..++..+. .+|+|+|+                  .++.+.++|..+...+
T Consensus        18 ~v~~g~~VlDIGtGsG--~l--------~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~   87 (230)
T 3lec_A           18 YVPKGARLLDVGSDHA--YL--------PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE   87 (230)
T ss_dssp             TSCTTEEEEEETCSTT--HH--------HHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred             hCCCCCEEEEECCchH--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc
Confidence            4567899999999999  77        778888763 57999999                  4699999999888766


Q ss_pred             C-ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 E-KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~-~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      + +||+|+...++.     .-+..++....+.|+++|+|+++..
T Consensus        88 ~~~~D~IviaGmGg-----~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           88 ADNIDTITICGMGG-----RLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             GGCCCEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             ccccCEEEEeCCch-----HHHHHHHHHHHHHhCcCCEEEEECC
Confidence            4 799988645422     2477889999999999999998864

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.02  E-value=1.2e-09  Score=91.80  Aligned_cols=86  Identities=19%  Similarity=0.100  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC-------------C---------ceEEEEcccc
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY-------------L---------ILEVIQNKIE  101 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~-------------~---------~i~~~~~d~~  101 (252)
                      ...++.+|||+|||+|  .+        +..++.. ++ .+|+++|+             .         ++.++++|+.
T Consensus        74 ~~~~~~~vLDiG~G~G--~~--------~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  143 (226)
T 1i1n_A           74 QLHEGAKALDVGSGSG--IL--------TACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  143 (226)
T ss_dssp             TSCTTCEEEEETCTTS--HH--------HHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             hCCCCCEEEEEcCCcC--HH--------HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcc
Confidence            3567899999999999  55        5555553 33 48999999             1         6889999998


Q ss_pred             ccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         102 NVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       102 ~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..... ++||+|++......+         +..+.++|+|||+|++..++
T Consensus       144 ~~~~~~~~fD~i~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          144 MGYAEEAPYDAIHVGAAAPVV---------PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             GCCGGGCCEEEEEECSBBSSC---------CHHHHHTEEEEEEEEEEESC
T ss_pred             cCcccCCCcCEEEECCchHHH---------HHHHHHhcCCCcEEEEEEec
Confidence            66443 789999986654332         35678999999999998754

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.02  E-value=9.2e-10  Score=97.83  Aligned_cols=92  Identities=13%  Similarity=-0.004  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------------CceEEEEccccccCC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------------LILEVIQNKIENVEL  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------------~~i~~~~~d~~~~~~  105 (252)
                      .++.+|||||||+|  .+        +..+++. +..+|+++|+                     .+++++.+|+..+..
T Consensus        94 ~~~~~VLdiG~G~G--~~--------~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~  163 (304)
T 3bwc_A           94 PKPERVLIIGGGDG--GV--------LREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVR  163 (304)
T ss_dssp             SSCCEEEEEECTTS--HH--------HHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH
T ss_pred             CCCCeEEEEcCCCC--HH--------HHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHH
Confidence            56789999999999  55        5566654 3468999999                     258899999987743


Q ss_pred             ---CCceeEEEecccccccCChhhH--HHHHHHHhccccCCeEEEeeccc
Q psy9773         106 ---PEKVDIIVSEWMGFYLLHESMI--DSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ---~~~fDlIv~~~~~~~l~~~~~~--~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                         +++||+|+++......+ ...+  ..++..+.++|+|||+|++...+
T Consensus       164 ~~~~~~fDvIi~d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          164 QTPDNTYDVVIIDTTDPAGP-ASKLFGEAFYKDVLRILKPDGICCNQGES  212 (304)
T ss_dssp             SSCTTCEEEEEEECC----------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hccCCceeEEEECCCCcccc-chhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence               47899999965433221 1112  57899999999999999997654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.02  E-value=5e-10  Score=97.54  Aligned_cols=88  Identities=15%  Similarity=0.081  Sum_probs=69.5

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEccccccC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENVE  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~~  104 (252)
                      ....++.+|||+|||+|  .+        +..+++. + ..+++++|+                  .++.++.+|+.+..
T Consensus       108 ~~~~~~~~VLDiG~G~G--~~--------~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  177 (277)
T 1o54_A          108 LDVKEGDRIIDTGVGSG--AM--------CAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF  177 (277)
T ss_dssp             TTCCTTCEEEEECCTTS--HH--------HHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC
T ss_pred             hCCCCCCEEEEECCcCC--HH--------HHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc
Confidence            45678899999999999  65        5666665 4 368999998                  26889999998873


Q ss_pred             CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..++||+|+++.        +++..++..+.++|+|||+|++..+.
T Consensus       178 ~~~~~D~V~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (277)
T 1o54_A          178 DEKDVDALFLDV--------PDPWNYIDKCWEALKGGGRFATVCPT  215 (277)
T ss_dssp             SCCSEEEEEECC--------SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             cCCccCEEEECC--------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            337899998843        24457888899999999999998764

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.01  E-value=1.1e-09  Score=93.68  Aligned_cols=89  Identities=16%  Similarity=0.022  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------------CceEEEEccccccCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------------~~i~~~~~d~~~~~~~  106 (252)
                      ...++.+|||+|||+|  .+        +..++..++ .+|+|+|+                  .++++..+|..+.-.+
T Consensus        12 ~v~~g~~VlDIGtGsG--~l--------~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~   81 (225)
T 3kr9_A           12 FVSQGAILLDVGSDHA--YL--------PIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE   81 (225)
T ss_dssp             TSCTTEEEEEETCSTT--HH--------HHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred             hCCCCCEEEEeCCCcH--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc
Confidence            4567889999999999  77        778888763 57999999                  4699999998654333


Q ss_pred             C-ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 E-KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~-~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      + +||+|+...++.     ..+..++......|+|+|+|+++..
T Consensus        82 ~~~~D~IviaG~Gg-----~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           82 TDQVSVITIAGMGG-----RLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             GGCCCEEEEEEECH-----HHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             CcCCCEEEEcCCCh-----HHHHHHHHHHHHHhCCCCEEEEECC
Confidence            3 699998744422     2477899999999999999998754

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.01  E-value=6.6e-10  Score=99.23  Aligned_cols=97  Identities=16%  Similarity=0.144  Sum_probs=70.1

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC-----------------CceEEEEccccccCC-
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY-----------------LILEVIQNKIENVEL-  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~-----------------~~i~~~~~d~~~~~~-  105 (252)
                      ...++.+|||+|||+|  ..        +..++..  +..+|+|+|+                 .++.++++|+..++. 
T Consensus       115 ~~~~g~~VLDlg~G~G--~~--------t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~  184 (315)
T 1ixk_A          115 DPKPGEIVADMAAAPG--GK--------TSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL  184 (315)
T ss_dssp             CCCTTCEEEECCSSCS--HH--------HHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG
T ss_pred             CCCCCCEEEEeCCCCC--HH--------HHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccc
Confidence            4577899999999999  44        4455543  2257999999                 378999999988754 


Q ss_pred             CCceeEEEecccc---cccCChhh----------------HHHHHHHHhccccCCeEEEeeccccc
Q psy9773         106 PEKVDIIVSEWMG---FYLLHESM----------------IDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       106 ~~~fDlIv~~~~~---~~l~~~~~----------------~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      +++||+|+++...   ..+...++                ...+|..+.++|+|||+|++++++..
T Consensus       185 ~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~  250 (315)
T 1ixk_A          185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE  250 (315)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence            4789999985321   11211111                25889999999999999999887644

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.01  E-value=5e-10  Score=97.90  Aligned_cols=98  Identities=14%  Similarity=0.019  Sum_probs=71.6

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh--cCCCcEEEeeC-----------------CceEEEEccccccCC-
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK--VHPLDHYAPQY-----------------LILEVIQNKIENVEL-  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~--~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~-  105 (252)
                      ...++.+|||+|||+|  ..        +..++.  .+..+|+|+|+                 .++.++++|+..++. 
T Consensus        80 ~~~~g~~VLDlgaG~G--~~--------t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~  149 (274)
T 3ajd_A           80 NPREDDFILDMCAAPG--GK--------TTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY  149 (274)
T ss_dssp             CCCTTCEEEETTCTTC--HH--------HHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH
T ss_pred             CCCCcCEEEEeCCCcc--HH--------HHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh
Confidence            3567899999999999  44        444444  33368999999                 378999999988754 


Q ss_pred             ----CCceeEEEecccccc---cC------------ChhhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773         106 ----PEKVDIIVSEWMGFY---LL------------HESMIDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus       106 ----~~~fDlIv~~~~~~~---l~------------~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                          .++||+|+++.....   +.            .......++..+.++|+|||+|++++++...
T Consensus       150 ~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~  216 (274)
T 3ajd_A          150 LLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEV  216 (274)
T ss_dssp             HHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCT
T ss_pred             hhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCh
Confidence                478999998532111   10            0124578899999999999999998877543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.01  E-value=5.1e-10  Score=97.09  Aligned_cols=88  Identities=24%  Similarity=0.308  Sum_probs=69.6

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC--------------C------ceEEEEccccc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY--------------L------ILEVIQNKIEN  102 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~--------------~------~i~~~~~d~~~  102 (252)
                      ....++.+|||+|||+|  .+        +..++.. + ..+++++|+              .      ++.++++|+..
T Consensus        95 ~~~~~~~~vLdiG~G~G--~~--------~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~  164 (280)
T 1i9g_A           95 GDIFPGARVLEAGAGSG--AL--------TLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  164 (280)
T ss_dssp             TTCCTTCEEEEECCTTS--HH--------HHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             cCCCCCCEEEEEccccc--HH--------HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence            45778899999999999  55        5566553 3 368999998              1      47899999988


Q ss_pred             cCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         103 VELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       103 ~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+++ ++||+|+++.        +++..++..+.++|+|||++++..+.
T Consensus       165 ~~~~~~~~D~v~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          165 SELPDGSVDRAVLDM--------LAPWEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             CCCCTTCEEEEEEES--------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             cCCCCCceeEEEECC--------cCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            8765 7899998832        23457889999999999999998764

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.00  E-value=4.6e-10  Score=95.56  Aligned_cols=89  Identities=12%  Similarity=-0.055  Sum_probs=59.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC---------------------CceEEEEccccccCC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY---------------------LILEVIQNKIENVEL  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~---------------------~~i~~~~~d~~~~~~  105 (252)
                      .++.+|||||||+|  .+        +..++. .+..+|+|+|+                     .++.++++|+..++.
T Consensus        23 ~~~~~vLDiGCG~G--~~--------~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~   92 (225)
T 3p2e_A           23 QFDRVHIDLGTGDG--RN--------IYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF   92 (225)
T ss_dssp             TCSEEEEEETCTTS--HH--------HHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG
T ss_pred             CCCCEEEEEeccCc--HH--------HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh
Confidence            57789999999999  55        445553 22246888888                     257899999988853


Q ss_pred             C--CceeEEEeccccccc--CChhhHHHHHHHHhccccCCeEEEe
Q psy9773         106 P--EKVDIIVSEWMGFYL--LHESMIDSVIFARDKFLKPEGVMYP  146 (252)
Q Consensus       106 ~--~~fDlIv~~~~~~~l--~~~~~~~~~l~~l~~~LkpgG~lv~  146 (252)
                      .  ..+|.|++++.....  ....+...+|..++++|||||+|++
T Consensus        93 ~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           93 ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            2  445555553321111  0001235689999999999999998

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.00  E-value=1.6e-09  Score=91.11  Aligned_cols=86  Identities=17%  Similarity=0.072  Sum_probs=66.0

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC------CcEEEeeC---------------C-------ceEEEE
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP------LDHYAPQY---------------L-------ILEVIQ   97 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~------~~v~gvD~---------------~-------~i~~~~   97 (252)
                      ...++.+|||+|||+|  .+        +..++....      .+|+++|+               .       ++.++.
T Consensus        77 ~~~~~~~VLdiG~G~G--~~--------~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  146 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSG--YL--------TVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIH  146 (227)
T ss_dssp             TSCTTCEEEEESCTTS--HH--------HHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEE
T ss_pred             hCCCCCEEEEECCCCC--HH--------HHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEE
Confidence            4677899999999999  55        556665432      48999999               2       589999


Q ss_pred             ccccccC----CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          98 NKIENVE----LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        98 ~d~~~~~----~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|+....    .. ++||+|++....+++         +..+.++|+|||++++..+.
T Consensus       147 ~d~~~~~~~~~~~~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          147 KNIYQVNEEEKKELGLFDAIHVGASASEL---------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             CCGGGCCHHHHHHHCCEEEEEECSBBSSC---------CHHHHHHEEEEEEEEEEEEE
T ss_pred             CChHhcccccCccCCCcCEEEECCchHHH---------HHHHHHhcCCCcEEEEEEcc
Confidence            9998764    33 789999997654432         36678999999999988753

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.00  E-value=5.7e-10  Score=102.51  Aligned_cols=95  Identities=17%  Similarity=0.124  Sum_probs=73.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------C---ceEEEEccccccCC---
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------L---ILEVIQNKIENVEL---  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~---~i~~~~~d~~~~~~---  105 (252)
                      .++.+|||+|||+|  .+        +..++..|+.+|+|+|+                .   ++.++++|+.++..   
T Consensus       219 ~~~~~VLDl~cG~G--~~--------sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~  288 (396)
T 3c0k_A          219 VENKRVLNCFSYTG--GF--------AVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYR  288 (396)
T ss_dssp             CTTCEEEEESCTTC--SH--------HHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHH
T ss_pred             hCCCeEEEeeccCC--HH--------HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHH
Confidence            47789999999999  66        77777777778999999                2   57899999987632   


Q ss_pred             --CCceeEEEecccccc------cCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         106 --PEKVDIIVSEWMGFY------LLHESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       106 --~~~fDlIv~~~~~~~------l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                        ..+||+|++++..+.      ......+..++..+.++|+|||++++++++..
T Consensus       289 ~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  343 (396)
T 3c0k_A          289 DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL  343 (396)
T ss_dssp             HTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             hcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence              358999999653211      11224677889999999999999999886633

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.99  E-value=4.9e-10  Score=98.79  Aligned_cols=85  Identities=12%  Similarity=-0.029  Sum_probs=69.2

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~  108 (252)
                      ..+|.+|||+|||+|  .+        ++.+++.|+.+|+|+|+                  .++.++++|...+...+.
T Consensus       123 ~~~g~~VlD~~aG~G--~~--------~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~  192 (278)
T 3k6r_A          123 AKPDELVVDMFAGIG--HL--------SLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENI  192 (278)
T ss_dssp             CCTTCEEEETTCTTT--TT--------THHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSC
T ss_pred             cCCCCEEEEecCcCc--HH--------HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccC
Confidence            578999999999999  77        88888888778999999                  578999999999877789


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ||.|+++....       ...++..+.++|+|||++.+..
T Consensus       193 ~D~Vi~~~p~~-------~~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          193 ADRILMGYVVR-------THEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             EEEEEECCCSS-------GGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEECCCCc-------HHHHHHHHHHHcCCCCEEEEEe
Confidence            99998854311       1245666778999999987654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.99  E-value=1.5e-09  Score=93.99  Aligned_cols=89  Identities=18%  Similarity=0.129  Sum_probs=72.0

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------------CceEEEEccccccCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------------~~i~~~~~d~~~~~~~  106 (252)
                      ...++.+|||||||+|  .+        +..++..+. .+|+|+|+                  .++.+.++|..+...+
T Consensus        18 ~v~~g~~VlDIGtGsG--~l--------~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~   87 (244)
T 3gnl_A           18 YITKNERIADIGSDHA--YL--------PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK   87 (244)
T ss_dssp             TCCSSEEEEEETCSTT--HH--------HHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred             hCCCCCEEEEECCccH--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc
Confidence            4577899999999999  77        778888763 57999999                  4699999999887665


Q ss_pred             C-ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 E-KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~-~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      + +||+|++..++.     .-+..+|....+.|+++|+|+++..
T Consensus        88 ~~~~D~IviagmGg-----~lI~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A           88 KDAIDTIVIAGMGG-----TLIRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             GGCCCEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             cccccEEEEeCCch-----HHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            4 599998744422     3477889999999999999998864

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.98  E-value=3.6e-09  Score=97.01  Aligned_cols=96  Identities=16%  Similarity=0.056  Sum_probs=70.1

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC--------CceEEEEccccccCCCCceeEEEecc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY--------LILEVIQNKIENVELPEKVDIIVSEW  116 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~--------~~i~~~~~d~~~~~~~~~fDlIv~~~  116 (252)
                      ..++.+|||+|||+|  .+        +..+++.  +..+++|+|+        .++.++++|+..+...++||+|++++
T Consensus        37 ~~~~~~vLD~gcGtG--~~--------~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~~~~fD~Ii~NP  106 (421)
T 2ih2_A           37 APRGGRVLEPACAHG--PF--------LRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILGNP  106 (421)
T ss_dssp             CCTTCEEEEETCTTC--HH--------HHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEEECC
T ss_pred             cCCCCEEEECCCCCh--HH--------HHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCccCCCCEEEECc
Confidence            345679999999999  55        4455543  3368999999        46899999999876557899999965


Q ss_pred             cccccCC---------hh-----------------hHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         117 MGFYLLH---------ES-----------------MIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       117 ~~~~l~~---------~~-----------------~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      -......         ..                 ....++..+.++|+|||++++..+..+
T Consensus       107 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~  168 (421)
T 2ih2_A          107 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATW  168 (421)
T ss_dssp             CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred             CccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHH
Confidence            4322211         11                 122668889999999999999887643

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.98  E-value=9.4e-10  Score=98.56  Aligned_cols=87  Identities=21%  Similarity=0.241  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC------------C----------------ceEE
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY------------L----------------ILEV   95 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~------------~----------------~i~~   95 (252)
                      ...++.+|||+|||+|  .+        +..+++. |+ .+|+++|+            .                ++.+
T Consensus       102 ~~~~g~~VLDiG~G~G--~~--------~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~  171 (336)
T 2b25_A          102 DINPGDTVLEAGSGSG--GM--------SLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF  171 (336)
T ss_dssp             TCCTTCEEEEECCTTS--HH--------HHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred             CCCCCCEEEEeCCCcC--HH--------HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence            4678899999999999  66        6666664 55 68999999            1                5889


Q ss_pred             EEccccccC--CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          96 IQNKIENVE--LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        96 ~~~d~~~~~--~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.+|+.+..  ++ ++||+|+++..        .+..++..+.++|+|||+|++..+.
T Consensus       172 ~~~d~~~~~~~~~~~~fD~V~~~~~--------~~~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          172 IHKDISGATEDIKSLTFDAVALDML--------NPHVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             EESCTTCCC-------EEEEEECSS--------STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             EECChHHcccccCCCCeeEEEECCC--------CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            999998873  33 68999998542        1223788899999999999987654

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.97  E-value=1.7e-09  Score=97.63  Aligned_cols=90  Identities=14%  Similarity=0.222  Sum_probs=70.6

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------CceEEEEccccccCCCCceeEEEecc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------LILEVIQNKIENVELPEKVDIIVSEW  116 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------~~i~~~~~d~~~~~~~~~fDlIv~~~  116 (252)
                      ..+.+|||||||+|  .+        +..+++..+ .+++++|+          .+++++.+|+.. +.+ .||+|++..
T Consensus       192 ~~~~~vlDvG~G~G--~~--------~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~-~~D~v~~~~  259 (358)
T 1zg3_A          192 EGLESLVDVGGGTG--GV--------TKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFK-SIP-SADAVLLKW  259 (358)
T ss_dssp             HTCSEEEEETCTTS--HH--------HHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTT-CCC-CCSEEEEES
T ss_pred             cCCCEEEEECCCcC--HH--------HHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCC-CCC-CceEEEEcc
Confidence            45689999999999  55        555555433 47888898          468999999987 555 599999988


Q ss_pred             cccccCChhhHHHHHHHHhccccC---CeEEEeeccc
Q psy9773         117 MGFYLLHESMIDSVIFARDKFLKP---EGVMYPYKCI  150 (252)
Q Consensus       117 ~~~~l~~~~~~~~~l~~l~~~Lkp---gG~lv~~~~~  150 (252)
                      ++|++.. .....+|++++++|+|   ||+|++....
T Consensus       260 vlh~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          260 VLHDWND-EQSLKILKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             CGGGSCH-HHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred             cccCCCH-HHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence            8777632 2355999999999999   9999987654

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.97  E-value=9.8e-10  Score=91.53  Aligned_cols=85  Identities=11%  Similarity=0.046  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEcccccc-CC-
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENV-EL-  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~-~~-  105 (252)
                      .++.+|||+|||+|  ..        +..++.. + ..+|+++|+                  .+++++++|+... +. 
T Consensus        55 ~~~~~vLdiG~G~G--~~--------~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  124 (210)
T 3c3p_A           55 KQPQLVVVPGDGLG--CA--------SWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ  124 (210)
T ss_dssp             HCCSEEEEESCGGG--HH--------HHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC
T ss_pred             hCCCEEEEEcCCcc--HH--------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC
Confidence            45689999999999  54        5555553 2 358999999                  3689999999765 32 


Q ss_pred             CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++ ||+|++...      ......++..+.++|+|||+|++...
T Consensus       125 ~~-fD~v~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          125 RD-IDILFMDCD------VFNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             CS-EEEEEEETT------TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             CC-CCEEEEcCC------hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence            36 999998531      24577899999999999999998654

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.97  E-value=8.6e-10  Score=101.27  Aligned_cols=95  Identities=23%  Similarity=0.153  Sum_probs=73.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------C-ceEEEEccccccCC----
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------L-ILEVIQNKIENVEL----  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~-~i~~~~~d~~~~~~----  105 (252)
                      .++.+|||+|||+|  .+        +..++..|+.+|+|+|+                 . ++.++++|+.++..    
T Consensus       216 ~~~~~VLDl~~G~G--~~--------~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~  285 (396)
T 2as0_A          216 QPGDRVLDVFTYTG--GF--------AIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK  285 (396)
T ss_dssp             CTTCEEEETTCTTT--HH--------HHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred             hCCCeEEEecCCCC--HH--------HHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh
Confidence            47889999999999  77        77777777778999999                 1 78999999987632    


Q ss_pred             -CCceeEEEecccccccC------ChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         106 -PEKVDIIVSEWMGFYLL------HESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       106 -~~~fDlIv~~~~~~~l~------~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                       ..+||+|++++..+...      .......++..+.++|+|||+|++.+++..
T Consensus       286 ~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  339 (396)
T 2as0_A          286 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  339 (396)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             hCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence             36899999965422111      113567888999999999999998876533

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.97  E-value=5.3e-10  Score=95.21  Aligned_cols=87  Identities=15%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEcccccc-C-
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENV-E-  104 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~-~-  104 (252)
                      ..++.+|||+|||+|  ..        +..+++. + ..+|+++|+                  .++.++.+|+... + 
T Consensus        58 ~~~~~~VLdiG~G~G--~~--------~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~  127 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTG--YS--------SLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQV  127 (239)
T ss_dssp             HHTCSEEEEECCTTC--HH--------HHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH
T ss_pred             hhCcCEEEEEeCCCC--HH--------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHH
Confidence            356789999999999  55        5555554 2 358999999                  2489999998653 1 


Q ss_pred             C---------------C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         105 L---------------P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       105 ~---------------~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .               . ++||+|++...      ...+..++..+.++|+|||+|++...
T Consensus       128 ~~~~~~~~~~~~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          128 LIDSKSAPSWASDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             HHHCSSCCGGGTTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             HHhhcccccccccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence            1               2 67999998532      24567889999999999999999764

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.96  E-value=7e-10  Score=97.76  Aligned_cols=91  Identities=19%  Similarity=0.055  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCce-
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEKV-  109 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~f-  109 (252)
                      ++.+|||+|||+|  .+        +..++..+..+|+|+|+                  .++.++++|+.... +++| 
T Consensus       123 ~~~~vLDlG~GsG--~~--------~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~-~~~f~  191 (284)
T 1nv8_A          123 GIKTVADIGTGSG--AI--------GVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-KEKFA  191 (284)
T ss_dssp             TCCEEEEESCTTS--HH--------HHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-GGGTT
T ss_pred             CCCEEEEEeCchh--HH--------HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-ccccC
Confidence            5679999999999  55        55555543468999999                  24999999998742 3578 


Q ss_pred             --eEEEecccccc--------cCChh--------hHHHHHHHHh-ccccCCeEEEeeccc
Q psy9773         110 --DIIVSEWMGFY--------LLHES--------MIDSVIFARD-KFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 --DlIv~~~~~~~--------l~~~~--------~~~~~l~~l~-~~LkpgG~lv~~~~~  150 (252)
                        |+|++++-...        +.+.+        +...++..+. +.|+|||+|++..+.
T Consensus       192 ~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~  251 (284)
T 1nv8_A          192 SIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  251 (284)
T ss_dssp             TCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             CCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence              99999632110        00221        1236889999 999999999997653

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.96  E-value=2.2e-09  Score=94.38  Aligned_cols=92  Identities=10%  Similarity=0.030  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCcC--chhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCC----
Q psy9773          50 GKTVLDVGTGTG--KSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVEL----  105 (252)
Q Consensus        50 ~~~VLDlGcGtG--~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~----  105 (252)
                      ..+|||||||+|  +++.         ..+.+ .+..+|+++|.                 .++.|+++|+.++..    
T Consensus        79 ~~q~LDLGcG~pT~~~~~---------~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~  149 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLH---------EIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDA  149 (277)
T ss_dssp             CCEEEEESCCSCCSSCHH---------HHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTC
T ss_pred             CCEEEEeCCCCCcccHHH---------HHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcc
Confidence            378999999973  2222         22222 23357999999                 258999999988621    


Q ss_pred             ---CCcee-----EEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 ---PEKVD-----IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ---~~~fD-----lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                         .+.||     .|+++.++|++....++..+|..+.+.|+|||+|+++...
T Consensus       150 ~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          150 PELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             HHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             cccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence               13454     5778888899876656889999999999999999998754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.94  E-value=8e-10  Score=108.87  Aligned_cols=93  Identities=14%  Similarity=0.023  Sum_probs=74.2

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------C--ceEEEEccccccC-C-C
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------L--ILEVIQNKIENVE-L-P  106 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~--~i~~~~~d~~~~~-~-~  106 (252)
                      .+|.+|||+|||||  .+        ++.++..|+.+|+++|+                 .  ++.++++|+.++. . .
T Consensus       538 ~~g~~VLDlg~GtG--~~--------sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~  607 (703)
T 3v97_A          538 SKGKDFLNLFSYTG--SA--------TVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREAN  607 (703)
T ss_dssp             CTTCEEEEESCTTC--HH--------HHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCC
T ss_pred             cCCCcEEEeeechh--HH--------HHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcC
Confidence            46889999999999  77        77878788778999999                 2  6899999998852 2 3


Q ss_pred             CceeEEEecccccc--------cCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFY--------LLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~--------l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++||+|++++-.+.        +....+...++..+.++|+|||+|+++++.
T Consensus       608 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          608 EQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            78999999664321        122346788899999999999999988765

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.94  E-value=1.9e-09  Score=90.92  Aligned_cols=86  Identities=15%  Similarity=0.077  Sum_probs=64.6

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC------CcEEEeeC---------------C-------ceEEE
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP------LDHYAPQY---------------L-------ILEVI   96 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~------~~v~gvD~---------------~-------~i~~~   96 (252)
                      ...++.+|||+|||+|  .+        +..++. .+.      .+|+++|+               .       ++.++
T Consensus        81 ~~~~~~~VLdiG~G~G--~~--------~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  150 (227)
T 1r18_A           81 HLKPGARILDVGSGSG--YL--------TACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  150 (227)
T ss_dssp             TCCTTCEEEEESCTTS--HH--------HHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             hCCCCCEEEEECCCcc--HH--------HHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence            4677899999999999  55        555554 332      47999998               1       58899


Q ss_pred             EccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          97 QNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        97 ~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+|+...... ++||+|++....+++         +..+.++|+|||+|++....
T Consensus       151 ~~d~~~~~~~~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          151 EGDGRKGYPPNAPYNAIHVGAAAPDT---------PTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             ESCGGGCCGGGCSEEEEEECSCBSSC---------CHHHHHTEEEEEEEEEEESC
T ss_pred             ECCcccCCCcCCCccEEEECCchHHH---------HHHHHHHhcCCCEEEEEEec
Confidence            9999873223 789999997765443         25678999999999998753

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.94  E-value=1.1e-09  Score=96.94  Aligned_cols=93  Identities=16%  Similarity=0.028  Sum_probs=65.9

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------------CceEEEEcccccc-C
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------------LILEVIQNKIENV-E  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------------~~i~~~~~d~~~~-~  104 (252)
                      ..+.+|||||||+|  .+        +..+++. +..+|+++|+                     .+++++.+|+... +
T Consensus        89 ~~~~~VLdiG~G~G--~~--------~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~  158 (296)
T 1inl_A           89 PNPKKVLIIGGGDG--GT--------LREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR  158 (296)
T ss_dssp             SSCCEEEEEECTTC--HH--------HHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG
T ss_pred             CCCCEEEEEcCCcC--HH--------HHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh
Confidence            35589999999999  65        5666665 4568999999                     2588999998764 2


Q ss_pred             C-CCceeEEEecccccccCChh--hHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 L-PEKVDIIVSEWMGFYLLHES--MIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~-~~~fDlIv~~~~~~~l~~~~--~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      . +++||+|+++..........  ....++..+.++|+|||+|++...+
T Consensus       159 ~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          159 KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             hCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            2 37899999854322011001  2267899999999999999998654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.93  E-value=8.4e-10  Score=95.16  Aligned_cols=86  Identities=13%  Similarity=0.018  Sum_probs=65.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEcccccc-C-C
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENV-E-L  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~-~-~  105 (252)
                      .++.+|||+|||+|  ..        +..+++. + ..+++++|+                  .+++++.+|+... + .
T Consensus        78 ~~~~~VLeiG~G~G--~~--------~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l  147 (247)
T 1sui_A           78 INAKNTMEIGVYTG--YS--------LLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEM  147 (247)
T ss_dssp             TTCCEEEEECCGGG--HH--------HHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             hCcCEEEEeCCCcC--HH--------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHH
Confidence            46689999999999  44        4455543 2 258999999                  3689999998764 2 1


Q ss_pred             ------CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 ------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 ------~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                            .++||+|++...      ......++..+.++|+|||+|++...
T Consensus       148 ~~~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~  191 (247)
T 1sui_A          148 IKDEKNHGSYDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_dssp             HHSGGGTTCBSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred             HhccCCCCCEEEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence                  468999998542      23567889999999999999998764

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.93  E-value=1.4e-09  Score=95.41  Aligned_cols=93  Identities=15%  Similarity=-0.015  Sum_probs=68.6

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------------CceEEEEcccccc-C
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------------LILEVIQNKIENV-E  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------------~~i~~~~~d~~~~-~  104 (252)
                      ..+.+|||||||+|  .+        +..+++. +..+|+++|+                     .+++++.+|+... .
T Consensus        74 ~~~~~VLdiG~G~G--~~--------~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~  143 (275)
T 1iy9_A           74 PNPEHVLVVGGGDG--GV--------IREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA  143 (275)
T ss_dssp             SSCCEEEEESCTTC--HH--------HHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH
T ss_pred             CCCCEEEEECCchH--HH--------HHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh
Confidence            35689999999999  66        6666665 5578999999                     3688999998774 2


Q ss_pred             C-CCceeEEEecccccccCCh-hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 L-PEKVDIIVSEWMGFYLLHE-SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~-~~~fDlIv~~~~~~~l~~~-~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      . +++||+|+++......+.. -....++..+.++|+|||+|++...+
T Consensus       144 ~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          144 KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             hCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            2 3789999996543221110 01257889999999999999998644

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.92  E-value=5.2e-09  Score=94.41  Aligned_cols=93  Identities=12%  Similarity=0.026  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEcccccc--
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENV--  103 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~--  103 (252)
                      ..+.+|||||||+|  .+        +..+++.. ..+|+++|+                     .+++++.+|+..+  
T Consensus       119 ~~~~~VLdIG~G~G--~~--------a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~  188 (334)
T 1xj5_A          119 PNPKKVLVIGGGDG--GV--------LREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK  188 (334)
T ss_dssp             SCCCEEEEETCSSS--HH--------HHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCcc--HH--------HHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHH
Confidence            45689999999999  55        55666653 468999999                     1588999998775  


Q ss_pred             CCC-CceeEEEecccccccCCh-hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         104 ELP-EKVDIIVSEWMGFYLLHE-SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       104 ~~~-~~fDlIv~~~~~~~l~~~-~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..+ ++||+|+++......... .....++..+.++|+|||+|++...+
T Consensus       189 ~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  237 (334)
T 1xj5_A          189 NAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  237 (334)
T ss_dssp             TSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             hccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            223 789999996532111101 11468999999999999999997544

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.91  E-value=8.9e-10  Score=100.84  Aligned_cols=93  Identities=19%  Similarity=0.127  Sum_probs=71.6

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC-----C
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL-----P  106 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~-----~  106 (252)
                      ++.+|||+|||+|  .+        +..++.. +.+|+|+|+                 .++.++++|+.++..     .
T Consensus       209 ~~~~VLDlg~G~G--~~--------~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~  277 (382)
T 1wxx_A          209 RGERALDVFSYAG--GF--------ALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEG  277 (382)
T ss_dssp             CEEEEEEETCTTT--HH--------HHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTT
T ss_pred             CCCeEEEeeeccC--HH--------HHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcC
Confidence            7789999999999  66        6677766 568999999                 348999999987632     3


Q ss_pred             CceeEEEecccccccC------ChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         107 EKVDIIVSEWMGFYLL------HESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~------~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      .+||+|++++..+...      .......++..+.++|+|||+|++++++..
T Consensus       278 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  329 (382)
T 1wxx_A          278 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  329 (382)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            6899999966422211      113567788999999999999999887643

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.91  E-value=1.3e-09  Score=100.46  Aligned_cols=95  Identities=15%  Similarity=0.153  Sum_probs=69.8

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccC--CCCc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVE--LPEK  108 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~--~~~~  108 (252)
                      ..+|.+|||+|||||  .+        ++.++..|+. |+++|+                ....+.++|+.++.  .++.
T Consensus       212 ~~~g~~VLDlg~GtG--~~--------sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~  280 (393)
T 4dmg_A          212 VRPGERVLDVYSYVG--GF--------ALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGP  280 (393)
T ss_dssp             CCTTCEEEEESCTTT--HH--------HHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCC
T ss_pred             hcCCCeEEEcccchh--HH--------HHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCC
Confidence            346899999999999  77        7788887766 999999                12357789988763  2345


Q ss_pred             eeEEEecccccccC------ChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         109 VDIIVSEWMGFYLL------HESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       109 fDlIv~~~~~~~l~------~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      ||+|++++..+...      .......++..+.++|+|||+|++.+++..
T Consensus       281 fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          281 FHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             EEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            99999966421110      113556888899999999999997776533

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.91  E-value=1.3e-09  Score=91.76  Aligned_cols=87  Identities=15%  Similarity=0.106  Sum_probs=66.4

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEccccccC--
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENVE--  104 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~~--  104 (252)
                      ..++.+|||+|||+|  ..        +..+++. + ..+++++|+                  .++.++.+|+....  
T Consensus        67 ~~~~~~vLdiG~G~G--~~--------~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~  136 (229)
T 2avd_A           67 LIQAKKALDLGTFTG--YS--------ALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDE  136 (229)
T ss_dssp             HTTCCEEEEECCTTS--HH--------HHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             hcCCCEEEEEcCCcc--HH--------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHH
Confidence            356789999999999  55        5555553 2 358999999                  36899999986541  


Q ss_pred             C--C---CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         105 L--P---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       105 ~--~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .  .   ++||+|++...      ......++..+.++|+|||++++...
T Consensus       137 ~~~~~~~~~~D~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          137 LLAAGEAGTFDVAVVDAD------KENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             HHHTTCTTCEEEEEECSC------STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HHhcCCCCCccEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence            1  1   57999998543      23567889999999999999999764

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.90  E-value=1.7e-09  Score=92.43  Aligned_cols=86  Identities=15%  Similarity=0.017  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEccccccC--C
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENVE--L  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~~--~  105 (252)
                      .++.+|||+|||+|..          +..+++. + ..+++++|+                  .++.++.+|+.+..  .
T Consensus        69 ~~~~~VLeiG~G~G~~----------~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l  138 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYS----------LLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNL  138 (237)
T ss_dssp             TTCCEEEEECCTTSHH----------HHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             hCCCEEEEeCCCCCHH----------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            4678999999999944          4454443 2 358999999                  36899999987651  1


Q ss_pred             ------CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 ------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 ------~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                            .++||+|++...      ......++..+.++|+|||++++...
T Consensus       139 ~~~~~~~~~fD~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          139 LQGQESEGSYDFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             HHSTTCTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             HhccCCCCCcCEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence                  368999998532      24677899999999999999998764

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.90  E-value=3e-09  Score=91.12  Aligned_cols=92  Identities=14%  Similarity=0.161  Sum_probs=64.6

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-------------------------CceEEEEccc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-------------------------LILEVIQNKI  100 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-------------------------~~i~~~~~d~  100 (252)
                      ..++.+|||+|||+|  .+        +..++..++ .+++|+|+                         .++.++++|+
T Consensus        47 ~~~~~~vLDiGcG~G--~~--------~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~  116 (246)
T 2vdv_E           47 MTKKVTIADIGCGFG--GL--------MIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNA  116 (246)
T ss_dssp             BSCCEEEEEETCTTS--HH--------HHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCT
T ss_pred             CCCCCEEEEEcCCCC--HH--------HHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccH
Confidence            346789999999999  66        666676654 47999997                         1578999999


Q ss_pred             cc-cC--CC-CceeEEEecccccccCC-----hhhHHHHHHHHhccccCCeEEEeec
Q psy9773         101 EN-VE--LP-EKVDIIVSEWMGFYLLH-----ESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       101 ~~-~~--~~-~~fDlIv~~~~~~~l~~-----~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .. ++  ++ +++|.|++.....+...     ......++..+.++|+|||+|++.+
T Consensus       117 ~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          117 MKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             TSCGGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            87 44  33 78999976321110000     0001478999999999999999854

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.90  E-value=2.1e-09  Score=96.33  Aligned_cols=92  Identities=16%  Similarity=0.050  Sum_probs=67.3

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------------CceEEEEccccccC-
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------------LILEVIQNKIENVE-  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------------~~i~~~~~d~~~~~-  104 (252)
                      ..+.+|||+|||+|  .+        +..+++. +..+|+++|+                     .+++++.+|+.... 
T Consensus       115 ~~~~~VLdiG~G~G--~~--------~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~  184 (321)
T 2pt6_A          115 KEPKNVLVVGGGDG--GI--------IRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE  184 (321)
T ss_dssp             SSCCEEEEEECTTC--HH--------HHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH
T ss_pred             CCCCEEEEEcCCcc--HH--------HHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh
Confidence            45689999999999  55        5566665 3468999999                     15889999987642 


Q ss_pred             -CCCceeEEEecccccccCChhhH--HHHHHHHhccccCCeEEEeeccc
Q psy9773         105 -LPEKVDIIVSEWMGFYLLHESMI--DSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 -~~~~fDlIv~~~~~~~l~~~~~~--~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       .+++||+|+++..... .....+  ..++..+.++|+|||++++...+
T Consensus       185 ~~~~~fDvIi~d~~~p~-~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          185 NVTNTYDVIIVDSSDPI-GPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             HCCSCEEEEEEECCCSS-SGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hcCCCceEEEECCcCCC-CcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence             2378999998653211 111122  68899999999999999997644

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.90  E-value=5.2e-10  Score=107.60  Aligned_cols=87  Identities=17%  Similarity=0.105  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEcccccc--CC-CC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENV--EL-PE  107 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~--~~-~~  107 (252)
                      .++.+|||||||+|  .+        +..+++.|+ .|+|||.                 .++++.++++.++  .. ++
T Consensus        65 ~~~~~vLDvGCG~G--~~--------~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  133 (569)
T 4azs_A           65 GRPLNVLDLGCAQG--FF--------SLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEG  133 (569)
T ss_dssp             TSCCEEEEETCTTS--HH--------HHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTT
T ss_pred             CCCCeEEEECCCCc--HH--------HHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCC
Confidence            45689999999999  88        999999986 6999999                 3689999999887  33 37


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEe
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYP  146 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~  146 (252)
                      +||+|+|..+++|+.+...+.. +..+.+.|+++|..++
T Consensus       134 ~fD~v~~~e~~ehv~~~~~~~~-~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          134 EFDLAIGLSVFHHIVHLHGIDE-VKRLLSRLADVTQAVI  171 (569)
T ss_dssp             SCSEEEEESCHHHHHHHHCHHH-HHHHHHHHHHHSSEEE
T ss_pred             CccEEEECcchhcCCCHHHHHH-HHHHHHHhccccceee
Confidence            8999999888888754432222 3345566677665543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.90  E-value=3.5e-09  Score=93.13  Aligned_cols=92  Identities=16%  Similarity=0.053  Sum_probs=68.1

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccC-
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVE-  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~-  104 (252)
                      ..+.+|||||||+|  .+        +..+++.. ..+++++|+                     .+++++.+|+.... 
T Consensus        77 ~~~~~VLdiG~G~G--~~--------~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~  146 (283)
T 2i7c_A           77 KEPKNVLVVGGGDG--GI--------IRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE  146 (283)
T ss_dssp             SSCCEEEEEECTTS--HH--------HHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH
T ss_pred             CCCCeEEEEeCCcC--HH--------HHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHH
Confidence            45689999999999  55        55666653 468999998                     25789999987752 


Q ss_pred             -CCCceeEEEecccccccCChhhH--HHHHHHHhccccCCeEEEeeccc
Q psy9773         105 -LPEKVDIIVSEWMGFYLLHESMI--DSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 -~~~~fDlIv~~~~~~~l~~~~~~--~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       .+++||+|+++...... ....+  ..++..+.++|+|||+|++...+
T Consensus       147 ~~~~~fD~Ii~d~~~~~~-~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          147 NVTNTYDVIIVDSSDPIG-PAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             HCCSCEEEEEEECCCTTT-GGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             hCCCCceEEEEcCCCCCC-cchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence             24789999995532221 11222  68999999999999999988654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.90  E-value=5.1e-09  Score=97.88  Aligned_cols=97  Identities=14%  Similarity=0.211  Sum_probs=70.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC-----------------CceEEEEccccccC--
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY-----------------LILEVIQNKIENVE--  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~-----------------~~i~~~~~d~~~~~--  104 (252)
                      ...++.+|||+|||+|  ..        +..++.. +. .+|+|+|+                 .++.++++|+..++  
T Consensus       256 ~~~~g~~VLDlgaG~G--~~--------t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~  325 (450)
T 2yxl_A          256 DPKPGETVVDLAAAPG--GK--------TTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI  325 (450)
T ss_dssp             CCCTTCEEEESSCTTC--HH--------HHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS
T ss_pred             CCCCcCEEEEeCCCcc--HH--------HHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh
Confidence            4577899999999999  44        4444442 22 57999999                 37899999998876  


Q ss_pred             CC-CceeEEEeccc---ccccCChhhH----------------HHHHHHHhccccCCeEEEeeccccc
Q psy9773         105 LP-EKVDIIVSEWM---GFYLLHESMI----------------DSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       105 ~~-~~fDlIv~~~~---~~~l~~~~~~----------------~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      ++ ++||+|+++..   ...+...++.                ..+|..+.++|+|||+|++++++..
T Consensus       326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            44 68999997321   1122222221                5789999999999999999887644

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.89  E-value=4.1e-09  Score=91.02  Aligned_cols=86  Identities=14%  Similarity=0.055  Sum_probs=68.0

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCceeE
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKVDI  111 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fDl  111 (252)
                      .++.+|||||||+|  .|        +..+.  +...++|+|+                .+..+..+|....+++++||+
T Consensus       104 ~~p~~VLDlGCG~g--pL--------al~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~Dv  171 (253)
T 3frh_A          104 ETPRRVLDIACGLN--PL--------ALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDL  171 (253)
T ss_dssp             CCCSEEEEETCTTT--HH--------HHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSE
T ss_pred             CCCCeEEEecCCcc--HH--------HHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcch
Confidence            56789999999999  77        66666  5578999999                567788999999988899999


Q ss_pred             EEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773         112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      |++.-+.+++.+... ...+ ++...|+++|+++-.
T Consensus       172 vLllk~lh~LE~q~~-~~~~-~ll~aL~~~~vvVsf  205 (253)
T 3frh_A          172 ALIFKLLPLLEREQA-GSAM-ALLQSLNTPRMAVSF  205 (253)
T ss_dssp             EEEESCHHHHHHHST-THHH-HHHHHCBCSEEEEEE
T ss_pred             HHHHHHHHHhhhhch-hhHH-HHHHHhcCCCEEEEc
Confidence            999877788855542 2344 666788999877643

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.89  E-value=9.3e-10  Score=94.32  Aligned_cols=90  Identities=12%  Similarity=0.057  Sum_probs=57.2

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------------CceEEEEcccccc---CCC
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------------LILEVIQNKIENV---ELP  106 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------------~~i~~~~~d~~~~---~~~  106 (252)
                      ++.+|||+|||+|  .+        +..++.. +..+|+|+|+                  .++.++++|+.+.   +++
T Consensus        65 ~~~~vLDlG~G~G--~~--------~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  134 (254)
T 2h00_A           65 TLRRGIDIGTGAS--CI--------YPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALK  134 (254)
T ss_dssp             CCCEEEEESCTTT--TH--------HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTST
T ss_pred             CCCEEEEeCCChh--HH--------HHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhh
Confidence            5789999999999  44        4444443 2357999999                  2489999997662   233


Q ss_pred             ----CceeEEEecccccccC-C-----------hhhHHHHHHHHhccccCCeEEEeec
Q psy9773         107 ----EKVDIIVSEWMGFYLL-H-----------ESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       107 ----~~fDlIv~~~~~~~l~-~-----------~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                          ++||+|++++..+... .           ......++..+.++|+|||.+++..
T Consensus       135 ~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~  192 (254)
T 2h00_A          135 EESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK  192 (254)
T ss_dssp             TCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHH
T ss_pred             cccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH
Confidence                4799999976533321 0           0112356778889999999887654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.88  E-value=2.3e-08  Score=82.66  Aligned_cols=87  Identities=16%  Similarity=0.108  Sum_probs=65.1

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCce
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      ...++.+|||+|||+|  .+        +..++..++.+++|+|+                .++.++++|+.+++  ++|
T Consensus        46 ~~~~~~~vlD~g~G~G--~~--------~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~  113 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTG--VL--------SYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN--SRV  113 (207)
T ss_dssp             TSSTTCEEEEETCTTC--HH--------HHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC--CCC
T ss_pred             CCCCcCEEEEeeCCCC--HH--------HHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC--CCC
Confidence            3557889999999999  66        66777777668999999                16899999999874  589


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      |+|++++..+.... .....++..+.++|  ||.+++.
T Consensus       114 D~v~~~~p~~~~~~-~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          114 DIVIMNPPFGSQRK-HADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             SEEEECCCCSSSST-TTTHHHHHHHHHHC--SEEEEEE
T ss_pred             CEEEEcCCCccccC-CchHHHHHHHHHhc--CcEEEEE
Confidence            99999876444322 33456788888887  5544433

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.87  E-value=3.4e-09  Score=95.41  Aligned_cols=82  Identities=18%  Similarity=0.173  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCce
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      .++.+|||+|||+|  .+        +.. ++ ++.+|+|+|+                  .++.++++|+.++.  ++|
T Consensus       194 ~~~~~VLDlg~G~G--~~--------~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~f  259 (336)
T 2yx1_A          194 SLNDVVVDMFAGVG--PF--------SIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKG  259 (336)
T ss_dssp             CTTCEEEETTCTTS--HH--------HHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCE
T ss_pred             CCCCEEEEccCccC--HH--------HHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCC
Confidence            57899999999999  66        666 66 5678999999                  36899999999887  789


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|++++..+       ...++..+.++|+|||++++....
T Consensus       260 D~Vi~dpP~~-------~~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          260 NRVIMNLPKF-------AHKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             EEEEECCTTT-------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             cEEEECCcHh-------HHHHHHHHHHHcCCCCEEEEEEee
Confidence            9999965321       126778888999999999987665

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.87  E-value=3.8e-09  Score=92.14  Aligned_cols=82  Identities=18%  Similarity=-0.070  Sum_probs=64.1

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------------CceEEEEccccccCCC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------------~~i~~~~~d~~~~~~~  106 (252)
                      ..+.+|||||||+|  .+        +..+++.+ .+|+++|+                     ++++++.+|...+.  
T Consensus        71 ~~~~~VL~iG~G~G--~~--------~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDL--EL--------AHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--  137 (262)
T ss_dssp             SCCCEEEEESSCCH--HH--------HHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--
T ss_pred             CCCCEEEEEeCCcC--HH--------HHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--
Confidence            35689999999999  55        55555556 78999999                     25788888988765  


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++||+|+++..        ++..++..+.++|+|||+|++...+
T Consensus       138 ~~fD~Ii~d~~--------dp~~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          138 KKYDLIFCLQE--------PDIHRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             CCEEEEEESSC--------CCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             hhCCEEEECCC--------ChHHHHHHHHHhcCCCcEEEEEcCC
Confidence            78999998531        2234899999999999999987543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.87  E-value=3.3e-09  Score=90.20  Aligned_cols=87  Identities=13%  Similarity=0.006  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEcccccc----
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENV----  103 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~----  103 (252)
                      .++.+|||+|||+|  ..        +..+++. + ..+++++|+                  .++.++.+|+.+.    
T Consensus        71 ~~~~~vLdiG~G~G--~~--------~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l  140 (232)
T 3cbg_A           71 TGAKQVLEIGVFRG--YS--------ALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQL  140 (232)
T ss_dssp             HTCCEEEEECCTTS--HH--------HHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEecCCCC--HH--------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            46789999999999  54        5555553 2 247999999                  3589999997543    


Q ss_pred             CC-C--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         104 EL-P--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       104 ~~-~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +. .  ++||+|++...      ......++..+.++|+|||+|++....
T Consensus       141 ~~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~  184 (232)
T 3cbg_A          141 TQGKPLPEFDLIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVL  184 (232)
T ss_dssp             HTSSSCCCEEEEEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred             HhcCCCCCcCEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            22 1  68999998542      246778999999999999999997654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.86  E-value=1.7e-09  Score=96.28  Aligned_cols=93  Identities=16%  Similarity=0.035  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEcccccc-C
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENV-E  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~-~  104 (252)
                      ..+.+|||||||+|  .+        +..+++.+ ..+++++|+                     .+++++.+|+..+ +
T Consensus        94 ~~~~~VLdiG~G~G--~~--------~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~  163 (304)
T 2o07_A           94 PNPRKVLIIGGGDG--GV--------LREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK  163 (304)
T ss_dssp             SSCCEEEEEECTTS--HH--------HHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCch--HH--------HHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh
Confidence            45689999999999  65        56666653 468999998                     2578999998764 2


Q ss_pred             C-CCceeEEEecccccccCCh-hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 L-PEKVDIIVSEWMGFYLLHE-SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~-~~~fDlIv~~~~~~~l~~~-~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      . +++||+|+++......+.. .....++..+.++|+|||+|++...+
T Consensus       164 ~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          164 QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            2 3789999995542211110 12356899999999999999998744

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.86  E-value=2.6e-09  Score=93.80  Aligned_cols=92  Identities=11%  Similarity=-0.035  Sum_probs=65.9

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------C----------------ceEEEEccc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------L----------------ILEVIQNKI  100 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~----------------~i~~~~~d~  100 (252)
                      ..+.+|||||||+|  .+        +..+++.+..+++++|+           .                +++++.+|+
T Consensus        74 ~~~~~VLdiG~G~G--~~--------~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~  143 (281)
T 1mjf_A           74 PKPKRVLVIGGGDG--GT--------VREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDG  143 (281)
T ss_dssp             SCCCEEEEEECTTS--HH--------HHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCH
T ss_pred             CCCCeEEEEcCCcC--HH--------HHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECch
Confidence            45689999999999  65        56666665568999998           1                367888887


Q ss_pred             cccCC-CCceeEEEecccccccCChhh--HHHHHHHHhccccCCeEEEeeccc
Q psy9773         101 ENVEL-PEKVDIIVSEWMGFYLLHESM--IDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       101 ~~~~~-~~~fDlIv~~~~~~~l~~~~~--~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..+.. +++||+|+++....... ...  ...++..+.++|+|||++++...+
T Consensus       144 ~~~l~~~~~fD~Ii~d~~~~~~~-~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  195 (281)
T 1mjf_A          144 FEFIKNNRGFDVIIADSTDPVGP-AKVLFSEEFYRYVYDALNNPGIYVTQAGS  195 (281)
T ss_dssp             HHHHHHCCCEEEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHhcccCCeeEEEECCCCCCCc-chhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            65421 47899999965422111 112  267899999999999999998654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.85  E-value=2.3e-09  Score=95.91  Aligned_cols=92  Identities=15%  Similarity=0.039  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------------CceEEEEcccccc-C
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------------LILEVIQNKIENV-E  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------------~~i~~~~~d~~~~-~  104 (252)
                      ..+.+|||||||+|  .+        +..+++. +..+|+++|+                     .+++++.+|+... .
T Consensus       107 ~~~~~VLdIG~G~G--~~--------~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~  176 (314)
T 2b2c_A          107 PDPKRVLIIGGGDG--GI--------LREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK  176 (314)
T ss_dssp             SSCCEEEEESCTTS--HH--------HHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH
T ss_pred             CCCCEEEEEcCCcC--HH--------HHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH
Confidence            35689999999999  55        5566654 3468999998                     1478899998764 2


Q ss_pred             -CCCceeEEEecccccccCChhhH--HHHHHHHhccccCCeEEEeeccc
Q psy9773         105 -LPEKVDIIVSEWMGFYLLHESMI--DSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 -~~~~fDlIv~~~~~~~l~~~~~~--~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                       .+++||+|+++...+..+ ...+  ..++..+.++|+|||+|++...+
T Consensus       177 ~~~~~fD~Ii~d~~~~~~~-~~~l~t~~~l~~~~~~LkpgG~lv~~~~~  224 (314)
T 2b2c_A          177 NHKNEFDVIITDSSDPVGP-AESLFGQSYYELLRDALKEDGILSSQGES  224 (314)
T ss_dssp             HCTTCEEEEEECCC--------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             hcCCCceEEEEcCCCCCCc-chhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence             237899999965422111 1122  68899999999999999998754

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.85  E-value=3.4e-09  Score=94.59  Aligned_cols=93  Identities=17%  Similarity=0.086  Sum_probs=68.0

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC----------------------CceEEEEcccccc-
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY----------------------LILEVIQNKIENV-  103 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~----------------------~~i~~~~~d~~~~-  103 (252)
                      ..+.+|||||||+|  .+        +..+++. +..+++++|+                      .+++++.+|+..+ 
T Consensus        76 ~~~~~VLdiG~G~G--~~--------~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l  145 (314)
T 1uir_A           76 PEPKRVLIVGGGEG--AT--------LREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYL  145 (314)
T ss_dssp             SCCCEEEEEECTTS--HH--------HHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHH
T ss_pred             CCCCeEEEEcCCcC--HH--------HHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHH
Confidence            45689999999999  55        5566665 3468999998                      1478999998774 


Q ss_pred             C-CCCceeEEEecccccc-cCC-hhh--HHHHHHHHhccccCCeEEEeeccc
Q psy9773         104 E-LPEKVDIIVSEWMGFY-LLH-ESM--IDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       104 ~-~~~~fDlIv~~~~~~~-l~~-~~~--~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      + .+++||+|+++...+. ... ...  ...++..+.++|+|||+|++...+
T Consensus       146 ~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  197 (314)
T 1uir_A          146 ERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (314)
T ss_dssp             HHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             HhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence            2 2378999999654332 001 111  368899999999999999997654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.85  E-value=1.1e-08  Score=94.92  Aligned_cols=98  Identities=17%  Similarity=0.116  Sum_probs=70.7

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------------CceEEEEccccccC--CC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------------LILEVIQNKIENVE--LP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------------~~i~~~~~d~~~~~--~~  106 (252)
                      ...++.+|||+|||+|  ..        +..++..+. .+|+|+|+                .++.++++|+..++  ++
T Consensus       243 ~~~~g~~VLDlgaG~G--~~--------t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~  312 (429)
T 1sqg_A          243 APQNGEHILDLCAAPG--GK--------TTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCG  312 (429)
T ss_dssp             CCCTTCEEEEESCTTC--HH--------HHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHT
T ss_pred             CCCCcCeEEEECCCch--HH--------HHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcc
Confidence            3567899999999999  55        555555432 58999999                25788999998875  34


Q ss_pred             -CceeEEEeccc---ccccCChhhH----------------HHHHHHHhccccCCeEEEeecccccc
Q psy9773         107 -EKVDIIVSEWM---GFYLLHESMI----------------DSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus       107 -~~fDlIv~~~~---~~~l~~~~~~----------------~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                       ++||+|+++.-   ...+.+.++.                ..++..+.++|+|||+|++++++...
T Consensus       313 ~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~  379 (429)
T 1sqg_A          313 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP  379 (429)
T ss_dssp             TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred             cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence             68999997331   1122222221                47899999999999999998877443

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.84  E-value=1.1e-08  Score=93.29  Aligned_cols=89  Identities=10%  Similarity=-0.043  Sum_probs=68.1

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEccccc-cCC-
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQNKIEN-VEL-  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~d~~~-~~~-  105 (252)
                      ...++.+|||+| |+|  .+        +..++..++ .+|+++|+                 .++.++++|+.. ++. 
T Consensus       169 ~~~~~~~VLDlG-G~G--~~--------~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~  237 (373)
T 2qm3_A          169 GDLENKDIFVLG-DDD--LT--------SIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY  237 (373)
T ss_dssp             TCSTTCEEEEES-CTT--CH--------HHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT
T ss_pred             CCCCCCEEEEEC-CCC--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh
Confidence            345689999999 999  55        566666665 68999999                 279999999988 553 


Q ss_pred             -CCceeEEEecccccccCChhhHHHHHHHHhccccCCeE-EEeecc
Q psy9773         106 -PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGV-MYPYKC  149 (252)
Q Consensus       106 -~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~-lv~~~~  149 (252)
                       .++||+|++++..+..    ....++..+.++|+|||+ ++++..
T Consensus       238 ~~~~fD~Vi~~~p~~~~----~~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          238 ALHKFDTFITDPPETLE----AIRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             TSSCBSEEEECCCSSHH----HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             ccCCccEEEECCCCchH----HHHHHHHHHHHHcccCCeEEEEEEe
Confidence             2689999997653322    368899999999999994 455543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.84  E-value=5.3e-09  Score=93.77  Aligned_cols=91  Identities=9%  Similarity=0.067  Sum_probs=67.3

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccC--CC-Cc
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVE--LP-EK  108 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~--~~-~~  108 (252)
                      ..+|||||||+|  .+        +..+++ .+..+++++|+                 .+++++.+|+..+.  .+ ++
T Consensus        90 ~~rVLdIG~G~G--~l--------a~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~  159 (317)
T 3gjy_A           90 KLRITHLGGGAC--TM--------ARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPAS  159 (317)
T ss_dssp             GCEEEEESCGGG--HH--------HHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTC
T ss_pred             CCEEEEEECCcC--HH--------HHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCC
Confidence            359999999999  66        666666 33357999999                 47899999998763  33 78


Q ss_pred             eeEEEecccccccCC-hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         109 VDIIVSEWMGFYLLH-ESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       109 fDlIv~~~~~~~l~~-~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ||+|++......... .-....++..++++|+|||+|++....
T Consensus       160 fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          160 RDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             EEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            999999653322111 111267899999999999999988753

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.83  E-value=3.5e-09  Score=99.53  Aligned_cols=97  Identities=14%  Similarity=0.125  Sum_probs=68.7

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC----------------CceEEEEccccccC--C
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY----------------LILEVIQNKIENVE--L  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~----------------~~i~~~~~d~~~~~--~  105 (252)
                      ...++.+|||+|||+|  ..        +..++..  +...|+|+|+                ..+.++++|+..+.  .
T Consensus        98 ~~~~g~~VLDlgaGpG--~k--------t~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~  167 (464)
T 3m6w_A           98 DPKPGERVLDLAAAPG--GK--------TTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF  167 (464)
T ss_dssp             CCCTTCEEEESSCTTC--HH--------HHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH
T ss_pred             CcCCCCEEEEEcCCcC--HH--------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc
Confidence            3568899999999999  44        4455442  2247999999                12889999988875  3


Q ss_pred             CCceeEEEecccc---cccCChhh----------------HHHHHHHHhccccCCeEEEeeccccc
Q psy9773         106 PEKVDIIVSEWMG---FYLLHESM----------------IDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       106 ~~~fDlIv~~~~~---~~l~~~~~----------------~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      +++||+|+++.-.   ..+...++                ...+|..+.++|+|||+|+.+++++.
T Consensus       168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~  233 (464)
T 3m6w_A          168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA  233 (464)
T ss_dssp             CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence            4789999973211   11111111                26789999999999999999887643

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.82  E-value=7.5e-09  Score=97.70  Aligned_cols=94  Identities=17%  Similarity=0.166  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC-----------------CceEEEEccccccC--CCC
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY-----------------LILEVIQNKIENVE--LPE  107 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~-----------------~~i~~~~~d~~~~~--~~~  107 (252)
                      ++.+|||+|||+|  ..        +..++.. + ...|+|+|+                 .++.++++|+..++  .++
T Consensus       117 ~g~~VLDl~aGpG--~k--------t~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~  186 (479)
T 2frx_A          117 APQRVMDVAAAPG--SK--------TTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPE  186 (479)
T ss_dssp             CCSEEEESSCTTS--HH--------HHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTT
T ss_pred             CCCEEEEeCCCCC--HH--------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccc
Confidence            8899999999999  44        4455443 2 257999999                 47889999998875  347


Q ss_pred             ceeEEEecccc---cccCChh----------------hHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         108 KVDIIVSEWMG---FYLLHES----------------MIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       108 ~fDlIv~~~~~---~~l~~~~----------------~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      +||+|+++.-.   ..+...+                ....+|..+.++|+|||+|+.++++..
T Consensus       187 ~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~  250 (479)
T 2frx_A          187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN  250 (479)
T ss_dssp             CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred             cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence            89999984211   1111111                124788999999999999999887644

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.82  E-value=5.4e-09  Score=98.06  Aligned_cols=97  Identities=14%  Similarity=0.081  Sum_probs=69.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC-----------------CceEEEEccccccC--
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY-----------------LILEVIQNKIENVE--  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~-----------------~~i~~~~~d~~~~~--  104 (252)
                      ...++.+|||+|||+|+.          +..++..  +...|+|+|+                 .++.++++|+..+.  
T Consensus       102 ~~~~g~~VLDlcaGpGgk----------t~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~  171 (456)
T 3m4x_A          102 AAKPGEKVLDLCAAPGGK----------STQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH  171 (456)
T ss_dssp             CCCTTCEEEESSCTTCHH----------HHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH
T ss_pred             CCCCCCEEEEECCCcCHH----------HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh
Confidence            357889999999999944          4444432  2357999999                 56889999998774  


Q ss_pred             CCCceeEEEecccc---cccCChhh----------------HHHHHHHHhccccCCeEEEeeccccc
Q psy9773         105 LPEKVDIIVSEWMG---FYLLHESM----------------IDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       105 ~~~~fDlIv~~~~~---~~l~~~~~----------------~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                      .+++||+|+++.-.   ..+...++                ...+|..+.++|+|||+|+.+++++.
T Consensus       172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  238 (456)
T 3m4x_A          172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA  238 (456)
T ss_dssp             HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred             ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence            34789999984321   11211111                22788999999999999999887643

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.81  E-value=9.8e-09  Score=93.69  Aligned_cols=89  Identities=16%  Similarity=0.000  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------------CceEEEEccccccCCC-
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------------LILEVIQNKIENVELP-  106 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------------~~i~~~~~d~~~~~~~-  106 (252)
                      ..++.+|||+|||+|  .+        +..++..+. .+++|+|+                  .++.++++|+.+++.+ 
T Consensus       215 ~~~~~~vLD~gCGsG--~~--------~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~  284 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSG--TI--------LIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV  284 (373)
T ss_dssp             TCCSCCEEETTCTTC--HH--------HHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC
T ss_pred             cCCCCEEEEccCcCc--HH--------HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc
Confidence            567889999999999  77        677777664 37999999                  3789999999999876 


Q ss_pred             CceeEEEecccccccC----Chhh-HHHHHHHHhccccCCeEEEee
Q psy9773         107 EKVDIIVSEWMGFYLL----HESM-IDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~----~~~~-~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      ++||+|++++......    .... ...++..+.++|  +|.+++.
T Consensus       285 ~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i  328 (373)
T 3tm4_A          285 DSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFI  328 (373)
T ss_dssp             SCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEE
T ss_pred             CCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEE
Confidence            7899999976432211    1112 367888888888  4444433

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.81  E-value=7.8e-09  Score=90.98  Aligned_cols=61  Identities=23%  Similarity=0.261  Sum_probs=49.6

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~  106 (252)
                      ....++.+|||+|||+|  .+        +..++..+ .+|+|+|+                  .+++++++|+..++++
T Consensus        24 ~~~~~~~~VLDiG~G~G--~l--------t~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~   92 (285)
T 1zq9_A           24 AALRPTDVVLEVGPGTG--NM--------TVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   92 (285)
T ss_dssp             TCCCTTCEEEEECCTTS--TT--------HHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             cCCCCCCEEEEEcCccc--HH--------HHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence            45678899999999999  66        66777765 57999999                  2689999999887665


Q ss_pred             CceeEEEeccc
Q psy9773         107 EKVDIIVSEWM  117 (252)
Q Consensus       107 ~~fDlIv~~~~  117 (252)
                       +||+|+++..
T Consensus        93 -~fD~vv~nlp  102 (285)
T 1zq9_A           93 -FFDTCVANLP  102 (285)
T ss_dssp             -CCSEEEEECC
T ss_pred             -hhcEEEEecC
Confidence             7999999654

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.79  E-value=1.2e-08  Score=91.84  Aligned_cols=98  Identities=14%  Similarity=0.101  Sum_probs=69.0

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC------CcEEEeeC----------------CceEEEEccccccCC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP------LDHYAPQY----------------LILEVIQNKIENVEL  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~------~~v~gvD~----------------~~i~~~~~d~~~~~~  105 (252)
                      .++.+|||+|||+|  .+        ...+++...      .+++|+|+                .++.++++|......
T Consensus       129 ~~~~~VlDp~cGsG--~~--------l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~  198 (344)
T 2f8l_A          129 KKNVSILDPACGTA--NL--------LTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLL  198 (344)
T ss_dssp             CSEEEEEETTCTTS--HH--------HHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCC
T ss_pred             CCCCEEEeCCCCcc--HH--------HHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccc
Confidence            46689999999999  44        333333211      47999999                257889999876544


Q ss_pred             CCceeEEEecccccccCChh--------------hH-HHHHHHHhccccCCeEEEeeccccccCC
Q psy9773         106 PEKVDIIVSEWMGFYLLHES--------------MI-DSVIFARDKFLKPEGVMYPYKCILHSAP  155 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~l~~~~--------------~~-~~~l~~l~~~LkpgG~lv~~~~~~~~~~  155 (252)
                      .++||+|++++..+++....              +. ..++..+.+.|+|||++++..+......
T Consensus       199 ~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~  263 (344)
T 2f8l_A          199 VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGT  263 (344)
T ss_dssp             CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGS
T ss_pred             cCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCC
Confidence            47899999987644442211              12 2578889999999999999887654433

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.77  E-value=1.1e-08  Score=89.26  Aligned_cols=89  Identities=11%  Similarity=-0.017  Sum_probs=69.6

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC----------------CceEEEEccccccCCCCcee
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY----------------LILEVIQNKIENVELPEKVD  110 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fD  110 (252)
                      .+..+|||||||+|  .+        +..+... +..+++++|+                .+.++...|....+++++||
T Consensus       131 ~~p~~VLDLGCG~G--pL--------Al~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~D  200 (281)
T 3lcv_B          131 PRPNTLRDLACGLN--PL--------AAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPAD  200 (281)
T ss_dssp             CCCSEEEETTCTTG--GG--------CCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCS
T ss_pred             CCCceeeeeccCcc--HH--------HHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcc
Confidence            55789999999999  87        7776664 4568999999                45778888988888789999


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ++++.-+.+++.... -...+ ++...|+|+|+++-..
T Consensus       201 vaL~lkti~~Le~q~-kg~g~-~ll~aL~~~~vvVSfp  236 (281)
T 3lcv_B          201 VTLLLKTLPCLETQQ-RGSGW-EVIDIVNSPNIVVTFP  236 (281)
T ss_dssp             EEEETTCHHHHHHHS-TTHHH-HHHHHSSCSEEEEEEE
T ss_pred             hHHHHHHHHHhhhhh-hHHHH-HHHHHhCCCCEEEecc
Confidence            999988888874332 22444 7789999999987543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.73  E-value=6.4e-09  Score=84.08  Aligned_cols=91  Identities=15%  Similarity=0.036  Sum_probs=66.6

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCceEEEEccccccCC---C-CceeEEEecccccc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVEL---P-EKVDIIVSEWMGFY  120 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i~~~~~d~~~~~~---~-~~fDlIv~~~~~~~  120 (252)
                      ..+.+|.+|||||||+..  +      |.+..+......+.    ..++.++++|+.++++   + ++||+|++..++++
T Consensus         8 ~g~~~g~~vL~~~~g~v~--v------D~s~~ml~~a~~~~----~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~   75 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKSSP--V------EALKGLVDKLQALT----GNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGS   75 (176)
T ss_dssp             TTCCTTSEEEEEECTTSC--H------HHHHHHHHHHHHHT----TTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTC
T ss_pred             cCCCCCCEEEEecCCcee--e------eCCHHHHHHHHHhc----ccCcEEEEechhcCccccCCCCCEeEEEECChhhh
Confidence            357889999999999863  2      44554433211100    0248899999999876   4 78999999877666


Q ss_pred             cCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         121 LLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       121 l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +.  .++..+|.+++++|||||+|++..+
T Consensus        76 ~~--~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           76 TT--LHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             CC--CCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cc--cCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            51  3457899999999999999999655

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.72  E-value=3.7e-09  Score=90.70  Aligned_cols=91  Identities=20%  Similarity=0.243  Sum_probs=64.8

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCCC--C
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVELP--E  107 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~~--~  107 (252)
                      ....++.+|||+|||+|  .+        +..++..+ .+|+|+|+               .+++++++|+.+++++  +
T Consensus        25 ~~~~~~~~VLDiG~G~G--~~--------~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~   93 (245)
T 1yub_A           25 LNLKETDTVYEIGTGKG--HL--------TTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ   93 (245)
T ss_dssp             CCCCSSEEEEECSCCCS--SC--------SHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred             cCCCCCCEEEEEeCCCC--HH--------HHHHHHhC-CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCC
Confidence            45667889999999999  66        66777776 68999999               2688999999998765  5


Q ss_pred             ceeEEEecccccccCChhhHHHH----------H----HHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSV----------I----FARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~----------l----~~l~~~LkpgG~lv~~~~  149 (252)
                      +| .|+++.. ++. ....+..+          +    ..+.++|+|||+|++...
T Consensus        94 ~f-~vv~n~P-y~~-~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~  146 (245)
T 1yub_A           94 RY-KIVGNIP-YHL-STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH  146 (245)
T ss_dssp             EE-EEEEECC-SSS-CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred             Cc-EEEEeCC-ccc-cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence            78 6666542 221 11122222          2    557899999999877654

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.72  E-value=6.6e-08  Score=89.87  Aligned_cols=86  Identities=15%  Similarity=0.120  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCcee
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKVD  110 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fD  110 (252)
                      ..++.+|||+|||+|  .+        +..+++.+ .+|+|+|+                ..+.|+++|+.++... +||
T Consensus       288 ~~~~~~VLDlgcG~G--~~--------sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~-~fD  355 (425)
T 2jjq_A          288 LVEGEKILDMYSGVG--TF--------GIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK-GFD  355 (425)
T ss_dssp             HCCSSEEEEETCTTT--HH--------HHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT-TCS
T ss_pred             cCCCCEEEEeeccch--HH--------HHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc-CCC
Confidence            457789999999999  77        77777764 68999999                1188999999887543 899


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +|++++....+     ...++..+ +.|+|+|++++++..
T Consensus       356 ~Vv~dPPr~g~-----~~~~~~~l-~~l~p~givyvsc~p  389 (425)
T 2jjq_A          356 TVIVDPPRAGL-----HPRLVKRL-NREKPGVIVYVSCNP  389 (425)
T ss_dssp             EEEECCCTTCS-----CHHHHHHH-HHHCCSEEEEEESCH
T ss_pred             EEEEcCCccch-----HHHHHHHH-HhcCCCcEEEEECCh
Confidence            99996642211     22355555 358999999998754

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.71  E-value=3e-08  Score=91.00  Aligned_cols=106  Identities=11%  Similarity=0.065  Sum_probs=75.9

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--------------------------------
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--------------------------------   82 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--------------------------------   82 (252)
                      ..+...|.......++.+|||+|||+|  ++        .+.++..++                                
T Consensus       181 e~lAa~ll~~~~~~~~~~vlDp~CGSG--t~--------lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~  250 (385)
T 3ldu_A          181 ETLAAGLIYLTPWKAGRVLVDPMCGSG--TI--------LIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFN  250 (385)
T ss_dssp             HHHHHHHHHTSCCCTTSCEEETTCTTC--HH--------HHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCeEEEcCCCCC--HH--------HHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHH
Confidence            445666766677778899999999999  66        444443321                                


Q ss_pred             -------CcEEEeeC------------------CceEEEEccccccCCCCceeEEEeccccc-ccCChhhHHHHHHHHhc
Q psy9773          83 -------LDHYAPQY------------------LILEVIQNKIENVELPEKVDIIVSEWMGF-YLLHESMIDSVIFARDK  136 (252)
Q Consensus        83 -------~~v~gvD~------------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~-~l~~~~~~~~~l~~l~~  136 (252)
                             .+|+|+|+                  .++++.++|+.+++.+.+||+|++++-.. .+.....+..+...+.+
T Consensus       251 ~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~  330 (385)
T 3ldu_A          251 KIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGY  330 (385)
T ss_dssp             HSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHH
Confidence                   36999999                  36999999999998778999999977522 12122356667777777


Q ss_pred             cccC--CeEEEeeccc
Q psy9773         137 FLKP--EGVMYPYKCI  150 (252)
Q Consensus       137 ~Lkp--gG~lv~~~~~  150 (252)
                      .|++  ||.+++.++.
T Consensus       331 ~lk~~~g~~~~iit~~  346 (385)
T 3ldu_A          331 AFRKLKNWSYYLITSY  346 (385)
T ss_dssp             HHHTSBSCEEEEEESC
T ss_pred             HHhhCCCCEEEEEECC
Confidence            7776  8888776553

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.66  E-value=9.1e-08  Score=87.86  Aligned_cols=106  Identities=17%  Similarity=0.158  Sum_probs=75.9

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--------------------------------
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--------------------------------   82 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--------------------------------   82 (252)
                      ..+..++.......++..|||++||+|  ++        .+.++..+.                                
T Consensus       180 e~LAaall~l~~~~~~~~llDp~CGSG--t~--------lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~  249 (384)
T 3ldg_A          180 ENMAAAIILLSNWFPDKPFVDPTCGSG--TF--------CIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADE  249 (384)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTS--HH--------HHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCeEEEeCCcCC--HH--------HHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHH
Confidence            445566666567778899999999999  66        444433221                                


Q ss_pred             -------CcEEEeeC------------------CceEEEEccccccCCCCceeEEEecccc-cccCChhhHHHHHHHHhc
Q psy9773          83 -------LDHYAPQY------------------LILEVIQNKIENVELPEKVDIIVSEWMG-FYLLHESMIDSVIFARDK  136 (252)
Q Consensus        83 -------~~v~gvD~------------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~-~~l~~~~~~~~~l~~l~~  136 (252)
                             .+++|+|+                  .++.++++|+.+++.+.+||+|++++-. ..+....++..+...+.+
T Consensus       250 ~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~  329 (384)
T 3ldg_A          250 QADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGE  329 (384)
T ss_dssp             HCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHH
T ss_pred             hhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHH
Confidence                   35999999                  3689999999999877889999997642 223334566777777767


Q ss_pred             cccC--CeEEEeeccc
Q psy9773         137 FLKP--EGVMYPYKCI  150 (252)
Q Consensus       137 ~Lkp--gG~lv~~~~~  150 (252)
                      .|++  ||.+++.++.
T Consensus       330 ~lk~~~g~~~~iit~~  345 (384)
T 3ldg_A          330 TFAPLKTWSQFILTND  345 (384)
T ss_dssp             HHTTCTTSEEEEEESC
T ss_pred             HHhhCCCcEEEEEECC
Confidence            7765  8888877653

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.65  E-value=5.3e-08  Score=89.67  Aligned_cols=105  Identities=12%  Similarity=0.089  Sum_probs=72.9

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--------------------------------
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--------------------------------   82 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--------------------------------   82 (252)
                      ..+...+.......++.+|||++||+|  ++        .+.++..+.                                
T Consensus       187 e~lAa~ll~l~~~~~~~~vlDp~CGSG--t~--------~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~  256 (393)
T 3k0b_A          187 ETMAAALVLLTSWHPDRPFYDPVCGSG--TI--------PIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAED  256 (393)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEETTCTTS--HH--------HHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCeEEEcCCCCC--HH--------HHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHH
Confidence            345555665566778899999999999  66        444443221                                


Q ss_pred             -------CcEEEeeC------------------CceEEEEccccccCCCCceeEEEeccccc-ccCChhhHHHHHHHHhc
Q psy9773          83 -------LDHYAPQY------------------LILEVIQNKIENVELPEKVDIIVSEWMGF-YLLHESMIDSVIFARDK  136 (252)
Q Consensus        83 -------~~v~gvD~------------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~-~l~~~~~~~~~l~~l~~  136 (252)
                             .+|+|+|+                  .++.++++|+.+++.+.+||+|++++-.. .+.....+..+...+.+
T Consensus       257 ~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~  336 (393)
T 3k0b_A          257 LANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGI  336 (393)
T ss_dssp             HCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             hhcccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHH
Confidence                   35999999                  35899999999998778999999976421 11112345556666666


Q ss_pred             cccC--CeEEEeecc
Q psy9773         137 FLKP--EGVMYPYKC  149 (252)
Q Consensus       137 ~Lkp--gG~lv~~~~  149 (252)
                      .|++  ||.+++.++
T Consensus       337 ~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          337 VYKRMPTWSVYVLTS  351 (393)
T ss_dssp             HHHTCTTCEEEEEEC
T ss_pred             HHhcCCCCEEEEEEC
Confidence            6665  888877665

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.65  E-value=8.3e-08  Score=83.97  Aligned_cols=101  Identities=13%  Similarity=0.004  Sum_probs=67.3

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeCC---------------ceEEEEccc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQYL---------------ILEVIQNKI  100 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~~---------------~i~~~~~d~  100 (252)
                      +..+... ..+.++.+|||||||+|  -+        +..++.. ++..++|+|+.               ++..++.++
T Consensus        63 L~ei~ek-~~l~~~~~VLDLGaAPG--GW--------SQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~  131 (277)
T 3evf_A           63 LRWFHER-GYVKLEGRVIDLGCGRG--GW--------CYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKT  131 (277)
T ss_dssp             HHHHHHT-TSSCCCEEEEEETCTTC--HH--------HHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSC
T ss_pred             HHHHHHh-CCCCCCCEEEEecCCCC--HH--------HHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccc
Confidence            4444444 56678889999999999  66        7766653 55567777761               445566665


Q ss_pred             cccCCC-CceeEEEecccccccCC-hhh---HHHHHHHHhccccCC-eEEEeecc
Q psy9773         101 ENVELP-EKVDIIVSEWMGFYLLH-ESM---IDSVIFARDKFLKPE-GVMYPYKC  149 (252)
Q Consensus       101 ~~~~~~-~~fDlIv~~~~~~~l~~-~~~---~~~~l~~l~~~Lkpg-G~lv~~~~  149 (252)
                      ....++ .+||+|+|+.+.+ ..+ ..+   ...+|..+.++|+|| |.|++-..
T Consensus       132 dv~~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf  185 (277)
T 3evf_A          132 DIHRLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL  185 (277)
T ss_dssp             CTTTSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred             eehhcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence            444444 6899999977544 111 111   123467788999999 99998654

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.64  E-value=2.8e-08  Score=92.62  Aligned_cols=103  Identities=18%  Similarity=-0.029  Sum_probs=70.1

Q ss_pred             HHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--------------CCCcEEEeeC-------------
Q psy9773          38 RAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--------------HPLDHYAPQY-------------   90 (252)
Q Consensus        38 ~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--------------g~~~v~gvD~-------------   90 (252)
                      .+.+.......++.+|||+|||+|+.++          .+++.              ...+++|+|+             
T Consensus       160 ~~~mv~~l~~~~~~~VlDpacGsG~fl~----------~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~  229 (445)
T 2okc_A          160 IQAMVDCINPQMGETVCDPACGTGGFLL----------TAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY  229 (445)
T ss_dssp             HHHHHHHHCCCTTCCEEETTCTTCHHHH----------HHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCEEeccCCCcchHHH----------HHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence            3334333344667899999999994433          22221              1247999999             


Q ss_pred             ----C--ceEEEEccccccCCCCceeEEEecccccccCChh--------------hHHHHHHHHhccccCCeEEEeeccc
Q psy9773          91 ----L--ILEVIQNKIENVELPEKVDIIVSEWMGFYLLHES--------------MIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        91 ----~--~i~~~~~d~~~~~~~~~fDlIv~~~~~~~l~~~~--------------~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                          .  ++.+.++|....+...+||+|++++.........              ....++..+.++|+|||++.+..+.
T Consensus       230 l~g~~~~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          230 LHGIGTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             HTTCCSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             HhCCCcCCCCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence                1  5678999988776556899999976543322111              1247888899999999999887764

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.63  E-value=1.8e-07  Score=87.01  Aligned_cols=87  Identities=13%  Similarity=0.029  Sum_probs=64.1

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccC----
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVE----  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~----  104 (252)
                      ...++.+|||+|||+|  .+        +..++.. ..+|+|+|+                 .++.|+++|+.+..    
T Consensus       283 ~~~~~~~VLDlgcG~G--~~--------~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~  351 (433)
T 1uwv_A          283 DVQPEDRVLDLFCGMG--NF--------TLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP  351 (433)
T ss_dssp             TCCTTCEEEEESCTTT--TT--------HHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred             cCCCCCEEEECCCCCC--HH--------HHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhh
Confidence            4567789999999999  66        6677766 468999999                 36899999998742    


Q ss_pred             CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++ ++||+|++++-...+      ..++..+. .++|++++++++..
T Consensus       352 ~~~~~fD~Vv~dPPr~g~------~~~~~~l~-~~~p~~ivyvsc~p  391 (433)
T 1uwv_A          352 WAKNGFDKVLLDPARAGA------AGVMQQII-KLEPIRIVYVSCNP  391 (433)
T ss_dssp             GGTTCCSEEEECCCTTCC------HHHHHHHH-HHCCSEEEEEESCH
T ss_pred             hhcCCCCEEEECCCCccH------HHHHHHHH-hcCCCeEEEEECCh
Confidence            22 679999996642222      23455553 47899999998754

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.60  E-value=1e-07  Score=84.46  Aligned_cols=60  Identities=23%  Similarity=0.257  Sum_probs=45.2

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCCCc
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~  108 (252)
                      ...++.+|||+|||+|  .+        +..++..+ .+|+|+|+                 .++.++++|+..++.+ +
T Consensus        39 ~~~~~~~VLDiG~G~G--~l--------t~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~-~  106 (299)
T 2h1r_A           39 KIKSSDIVLEIGCGTG--NL--------TVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP-K  106 (299)
T ss_dssp             CCCTTCEEEEECCTTS--TT--------HHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC-C
T ss_pred             CCCCcCEEEEEcCcCc--HH--------HHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc-c
Confidence            4567899999999999  66        66777764 57999999                 3688999999887654 8


Q ss_pred             eeEEEeccc
Q psy9773         109 VDIIVSEWM  117 (252)
Q Consensus       109 fDlIv~~~~  117 (252)
                      ||+|+++..
T Consensus       107 ~D~Vv~n~p  115 (299)
T 2h1r_A          107 FDVCTANIP  115 (299)
T ss_dssp             CSEEEEECC
T ss_pred             CCEEEEcCC
Confidence            999999664

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.52  E-value=2.5e-07  Score=82.10  Aligned_cols=68  Identities=22%  Similarity=0.298  Sum_probs=54.3

Q ss_pred             HHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEcccccc
Q psy9773          39 AAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENV  103 (252)
Q Consensus        39 ~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~  103 (252)
                      +.+.......++.+|||||||+|  .+        +..++..+ .+|+|+|+               .+++++++|+..+
T Consensus        40 ~~Iv~~l~~~~~~~VLEIG~G~G--~l--------T~~La~~~-~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~  108 (295)
T 3gru_A           40 NKAVESANLTKDDVVLEIGLGKG--IL--------TEELAKNA-KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKV  108 (295)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTS--HH--------HHHHHHHS-SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTS
T ss_pred             HHHHHhcCCCCcCEEEEECCCch--HH--------HHHHHhcC-CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhC
Confidence            33444456678899999999999  66        67777764 68999999               5789999999998


Q ss_pred             CCC-CceeEEEeccc
Q psy9773         104 ELP-EKVDIIVSEWM  117 (252)
Q Consensus       104 ~~~-~~fDlIv~~~~  117 (252)
                      +++ .+||+|+++..
T Consensus       109 ~~~~~~fD~Iv~NlP  123 (295)
T 3gru_A          109 DLNKLDFNKVVANLP  123 (295)
T ss_dssp             CGGGSCCSEEEEECC
T ss_pred             CcccCCccEEEEeCc
Confidence            776 57999998653

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.51  E-value=4.5e-08  Score=90.11  Aligned_cols=85  Identities=13%  Similarity=-0.087  Sum_probs=66.5

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC-----------------C-c-eEEEEccccccCC-
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY-----------------L-I-LEVIQNKIENVEL-  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~-----------------~-~-i~~~~~d~~~~~~-  105 (252)
                      .+|.+|||++||+|  .+        ++.+++.  |+.+|+++|+                 . + +.++++|+..+.. 
T Consensus        51 ~~g~~VLDlfaGtG--~~--------sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~  120 (392)
T 3axs_A           51 GRPVKVADPLSASG--IR--------AIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRK  120 (392)
T ss_dssp             CSCEEEEESSCTTS--HH--------HHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHS
T ss_pred             CCCCEEEECCCccc--HH--------HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHH
Confidence            46789999999999  77        7777773  5578999999                 2 3 8999999877632 


Q ss_pred             --CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 --PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 --~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                        .+.||+|++++.       .....++..+.++|+|||+|++++.
T Consensus       121 ~~~~~fD~V~lDP~-------g~~~~~l~~a~~~Lk~gGll~~t~t  159 (392)
T 3axs_A          121 EWGFGFDYVDLDPF-------GTPVPFIESVALSMKRGGILSLTAT  159 (392)
T ss_dssp             CCSSCEEEEEECCS-------SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhCCCCcEEEECCC-------cCHHHHHHHHHHHhCCCCEEEEEec
Confidence              367999999772       1224578888899999999998774

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.43  E-value=1.1e-07  Score=87.05  Aligned_cols=83  Identities=12%  Similarity=-0.007  Sum_probs=64.3

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC--------------C---------------c---eEE
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY--------------L---------------I---LEV   95 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~--------------~---------------~---i~~   95 (252)
                      ++.+|||+|||+|  .+        ++.++.. ++.+|+++|+              .               .   +.+
T Consensus        47 ~~~~VLDl~aGtG--~~--------~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v  116 (378)
T 2dul_A           47 NPKIVLDALSATG--IR--------GIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVI  116 (378)
T ss_dssp             CCSEEEESSCTTS--HH--------HHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEE
T ss_pred             CCCEEEECCCchh--HH--------HHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEE
Confidence            6789999999999  77        7777765 5567999999              2               2   778


Q ss_pred             EEccccccCC--CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773          96 IQNKIENVEL--PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        96 ~~~d~~~~~~--~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +++|+..+..  ..+||+|++++.       .....++..+.+.|+|||++++++
T Consensus       117 ~~~Da~~~~~~~~~~fD~I~lDP~-------~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          117 NHDDANRLMAERHRYFHFIDLDPF-------GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             EESCHHHHHHHSTTCEEEEEECCS-------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EcCcHHHHHHhccCCCCEEEeCCC-------CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            8899877632  357999998652       123467888889999999998875

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.43  E-value=1.7e-06  Score=74.22  Aligned_cols=68  Identities=15%  Similarity=0.156  Sum_probs=51.4

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEcccc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIE  101 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~  101 (252)
                      +...+.......++.+|||+|||+|  .+        +..++..+ .+|+|+|+               .+++++++|+.
T Consensus        18 ~~~~i~~~~~~~~~~~VLDiG~G~G--~l--------t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~   86 (244)
T 1qam_A           18 NIDKIMTNIRLNEHDNIFEIGSGKG--HF--------TLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDIL   86 (244)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTS--HH--------HHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGG
T ss_pred             HHHHHHHhCCCCCCCEEEEEeCCch--HH--------HHHHHHcC-CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHH
Confidence            3444555556678899999999999  66        67777776 67999999               37899999999


Q ss_pred             ccCCC--CceeEEEecc
Q psy9773         102 NVELP--EKVDIIVSEW  116 (252)
Q Consensus       102 ~~~~~--~~fDlIv~~~  116 (252)
                      .++++  ..| .|+++.
T Consensus        87 ~~~~~~~~~~-~vv~nl  102 (244)
T 1qam_A           87 QFKFPKNQSY-KIFGNI  102 (244)
T ss_dssp             GCCCCSSCCC-EEEEEC
T ss_pred             hCCcccCCCe-EEEEeC
Confidence            98776  345 455543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.43  E-value=1.3e-06  Score=77.81  Aligned_cols=96  Identities=14%  Similarity=0.063  Sum_probs=64.7

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh--cCCCcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK--VHPLDHYAPQY-----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~--~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~  106 (252)
                      ...+|.+|||+|||+|+.          +..++.  .+...|+|+|+                 .++.++++|+..+...
T Consensus        99 ~~~~g~~VLDlcaG~G~k----------t~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~  168 (309)
T 2b9e_A           99 DPPPGSHVIDACAAPGNK----------TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS  168 (309)
T ss_dssp             CCCTTCEEEESSCTTCHH----------HHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT
T ss_pred             CCCCCCEEEEeCCChhHH----------HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcc
Confidence            357889999999999944          444444  23358999999                 4789999999887543


Q ss_pred             ----CceeEEEecccc---cccCCh-----------hh-------HHHHHHHHhccccCCeEEEeeccccc
Q psy9773         107 ----EKVDIIVSEWMG---FYLLHE-----------SM-------IDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       107 ----~~fDlIv~~~~~---~~l~~~-----------~~-------~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                          .+||+|+++.-.   ..+...           .+       ...+|..+.++|+ ||+|+.++++++
T Consensus       169 ~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~  238 (309)
T 2b9e_A          169 DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC  238 (309)
T ss_dssp             CGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred             ccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence                579999984211   111110           11       1246777878886 999998877644

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.41  E-value=4.9e-07  Score=82.19  Aligned_cols=81  Identities=12%  Similarity=0.043  Sum_probs=56.1

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC--C----
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL--P----  106 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~--~----  106 (252)
                      +.+|||+|||+|  .+        ++.+++. +.+|+|+|+                 .++.|+++|+.++..  .    
T Consensus       214 ~~~vLDl~cG~G--~~--------~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~  282 (369)
T 3bt7_A          214 KGDLLELYCGNG--NF--------SLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE  282 (369)
T ss_dssp             CSEEEEESCTTS--HH--------HHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCC
T ss_pred             CCEEEEccCCCC--HH--------HHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccc
Confidence            578999999999  77        7777764 468999999                 478999999876521  1    


Q ss_pred             -----------CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 -----------EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 -----------~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                                 .+||+|++++-...+         ...+.++|+++|+++..+++
T Consensus       283 ~~~l~~~~~~~~~fD~Vv~dPPr~g~---------~~~~~~~l~~~g~ivyvsc~  328 (369)
T 3bt7_A          283 FNRLQGIDLKSYQCETIFVDPPRSGL---------DSETEKMVQAYPRILYISCN  328 (369)
T ss_dssp             CTTGGGSCGGGCCEEEEEECCCTTCC---------CHHHHHHHTTSSEEEEEESC
T ss_pred             cccccccccccCCCCEEEECcCcccc---------HHHHHHHHhCCCEEEEEECC
Confidence                       279999986632211         12233445577777655543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.40  E-value=9e-07  Score=77.51  Aligned_cols=86  Identities=14%  Similarity=0.159  Sum_probs=60.4

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------CceEEEEccccccCCC--Cc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LILEVIQNKIENVELP--EK  108 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~i~~~~~d~~~~~~~--~~  108 (252)
                      ....++ +|||+|||+|  .+        +..++..+ .+|+|+|+              .+++++++|+..++++  ..
T Consensus        43 ~~~~~~-~VLEIG~G~G--~l--------t~~L~~~~-~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~  110 (271)
T 3fut_A           43 ARPFTG-PVFEVGPGLG--AL--------TRALLEAG-AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQ  110 (271)
T ss_dssp             HCCCCS-CEEEECCTTS--HH--------HHHHHHTT-CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCT
T ss_pred             cCCCCC-eEEEEeCchH--HH--------HHHHHHcC-CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccC
Confidence            345677 9999999999  77        77777776 57999999              4699999999998776  36


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      +|.|+++.- +++ ..+-+..++..   ..-+.+.+++.
T Consensus       111 ~~~iv~NlP-y~i-ss~il~~ll~~---~~~~~~~lm~Q  144 (271)
T 3fut_A          111 GSLLVANLP-YHI-ATPLVTRLLKT---GRFARLVFLVQ  144 (271)
T ss_dssp             TEEEEEEEC-SSC-CHHHHHHHHHH---CCEEEEEEEEE
T ss_pred             ccEEEecCc-ccc-cHHHHHHHhcC---CCCCEEEEEee
Confidence            899988653 333 22334444443   11235555554

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.39  E-value=1.3e-06  Score=80.00  Aligned_cols=47  Identities=19%  Similarity=0.213  Sum_probs=39.5

Q ss_pred             CCC-CceeEEEecccccccCChh-----------------------------------hHHHHHHHHhccccCCeEEEee
Q psy9773         104 ELP-EKVDIIVSEWMGFYLLHES-----------------------------------MIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       104 ~~~-~~fDlIv~~~~~~~l~~~~-----------------------------------~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      .+| +++|+|+++.++|++...+                                   |+..+|+.+++.|+|||+|+++
T Consensus       145 lfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~  224 (374)
T 3b5i_A          145 LFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLV  224 (374)
T ss_dssp             CSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            344 8999999999999987433                                   6777899999999999999998


Q ss_pred             ccc
Q psy9773         148 KCI  150 (252)
Q Consensus       148 ~~~  150 (252)
                      ...
T Consensus       225 ~~g  227 (374)
T 3b5i_A          225 CLG  227 (374)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            764

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.39  E-value=4.3e-07  Score=79.59  Aligned_cols=101  Identities=12%  Similarity=0.010  Sum_probs=64.3

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeCC---------------ceEEEEccc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQYL---------------ILEVIQNKI  100 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~~---------------~i~~~~~d~  100 (252)
                      +..+... ..+.++.+|||||||+|  -+        +..++. .++..|+|+|+.               ++..+..++
T Consensus        79 L~ei~eK-~~Lk~~~~VLDLGaAPG--GW--------sQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~  147 (282)
T 3gcz_A           79 LRWMEER-GYVKPTGIVVDLGCGRG--GW--------SYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKT  147 (282)
T ss_dssp             HHHHHHT-TSCCCCEEEEEETCTTC--HH--------HHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC
T ss_pred             HHHHHHh-cCCCCCCEEEEeCCCCC--HH--------HHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCc
Confidence            3443433 36678889999999999  66        777664 556678899881               222333332


Q ss_pred             cccCCC-CceeEEEecccccccCC-h-h--hHHHHHHHHhccccCC--eEEEeecc
Q psy9773         101 ENVELP-EKVDIIVSEWMGFYLLH-E-S--MIDSVIFARDKFLKPE--GVMYPYKC  149 (252)
Q Consensus       101 ~~~~~~-~~fDlIv~~~~~~~l~~-~-~--~~~~~l~~l~~~Lkpg--G~lv~~~~  149 (252)
                      .-..++ .++|+|+|+.+.+ ... . .  ....+|.-+.++|+||  |.|++-..
T Consensus       148 dv~~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF  202 (282)
T 3gcz_A          148 DVFNMEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL  202 (282)
T ss_dssp             CGGGSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             chhhcCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence            222233 7899999977654 111 1 1  1223567778999999  99998654

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.31  E-value=1.8e-06  Score=78.58  Aligned_cols=100  Identities=13%  Similarity=0.099  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCcCchhh--hhccCccchHHH--h-----hcCCCcEEEeeC------------C------ceEEEEcccc
Q psy9773          49 AGKTVLDVGTGTGKSIL--LQGHGVDHHSFC--T-----KVHPLDHYAPQY------------L------ILEVIQNKIE  101 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~l--l~~~~v~~s~~~--a-----~~g~~~v~gvD~------------~------~i~~~~~d~~  101 (252)
                      ..-+|+|+||++|.+++  ++.+ |+ ++.-  .     ..+..+|+.-|.            .      +..|+.+...
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~i-i~-~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpg  128 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTEL-IK-TVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG  128 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTT-HH-HHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEES
T ss_pred             CceEEEecCCCCCcchHHHHHHH-HH-HHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecch
Confidence            34689999999997776  1111 00 0000  0     011135777787            1      2245554444


Q ss_pred             c---cCCC-CceeEEEecccccccCChh------------------------------hHHHHHHHHhccccCCeEEEee
Q psy9773         102 N---VELP-EKVDIIVSEWMGFYLLHES------------------------------MIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       102 ~---~~~~-~~fDlIv~~~~~~~l~~~~------------------------------~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      .   -.+| +++|+|+++.++|++...+                              |+..+|....+.|+|||+|++.
T Consensus       129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            4   3555 8999999999988876422                              5677799999999999999998


Q ss_pred             ccc
Q psy9773         148 KCI  150 (252)
Q Consensus       148 ~~~  150 (252)
                      ...
T Consensus       209 ~~g  211 (359)
T 1m6e_X          209 ILG  211 (359)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            764

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.30  E-value=1.4e-06  Score=75.63  Aligned_cols=60  Identities=13%  Similarity=0.210  Sum_probs=48.1

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCCC---
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVELP---  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~~---  106 (252)
                      ....++.+|||||||+|  .+        +..++..+ .+|+|+|+               .+++++++|+..++++   
T Consensus        25 ~~~~~~~~VLEIG~G~G--~l--------t~~La~~~-~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~   93 (255)
T 3tqs_A           25 IHPQKTDTLVEIGPGRG--AL--------TDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVK   93 (255)
T ss_dssp             HCCCTTCEEEEECCTTT--TT--------HHHHTTTS-SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSC
T ss_pred             cCCCCcCEEEEEccccc--HH--------HHHHHHhC-CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhc
Confidence            35677899999999999  66        77777776 68999999               4789999999998764   


Q ss_pred             --CceeEEEecc
Q psy9773         107 --EKVDIIVSEW  116 (252)
Q Consensus       107 --~~fDlIv~~~  116 (252)
                        ++|| |+++.
T Consensus        94 ~~~~~~-vv~Nl  104 (255)
T 3tqs_A           94 TDKPLR-VVGNL  104 (255)
T ss_dssp             CSSCEE-EEEEC
T ss_pred             cCCCeE-EEecC
Confidence              4688 55544

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.28  E-value=4e-06  Score=71.76  Aligned_cols=98  Identities=14%  Similarity=0.138  Sum_probs=67.9

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC----------------CceEEEEc-
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------------LILEVIQN-   98 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------------~~i~~~~~-   98 (252)
                      +..+..+. .+.++.+||||||++|  -+        +.+++. .|+.+|+|+|+                ..++|.++ 
T Consensus        67 L~ei~ek~-~l~~g~~VvDLGaapG--GW--------Sq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gv  135 (267)
T 3p8z_A           67 LQWFVERN-MVIPEGRVIDLGCGRG--GW--------SYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGK  135 (267)
T ss_dssp             HHHHHHTT-SSCCCEEEEEESCTTS--HH--------HHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSC
T ss_pred             HHHHHHhc-CCCCCCEEEEcCCCCC--cH--------HHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEecc
Confidence            44444443 6788899999999999  66        775554 66778999999                56889988 


Q ss_pred             cccccCCCCceeEEEecccccccCChh-hH---HHHHHHHhccccCCeEEEeec
Q psy9773          99 KIENVELPEKVDIIVSEWMGFYLLHES-MI---DSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        99 d~~~~~~~~~fDlIv~~~~~~~l~~~~-~~---~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      |+..++. .++|+|+|+..- .-++.. +-   ..+|.-+.++|++ |-|++-.
T Consensus       136 Dv~~~~~-~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KV  186 (267)
T 3p8z_A          136 DVFYLPP-EKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKV  186 (267)
T ss_dssp             CGGGCCC-CCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEE
T ss_pred             ceeecCC-ccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEE
Confidence            8766644 679999996643 222211 22   2366666899998 6666643

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.27  E-value=5.2e-06  Score=75.62  Aligned_cols=60  Identities=12%  Similarity=0.066  Sum_probs=52.1

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCCC-CceeEEEec
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVELP-EKVDIIVSE  115 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~~-~~fDlIv~~  115 (252)
                      ..+|.+||||||++|  -+        +..++++|. +|+|||.          .++.++++|...+.++ ++||+|+|.
T Consensus       209 l~~G~~vlDLGAaPG--GW--------T~~l~~rg~-~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsD  277 (375)
T 4auk_A          209 LANGMWAVDLGACPG--GW--------TYQLVKRNM-WVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCD  277 (375)
T ss_dssp             SCTTCEEEEETCTTC--HH--------HHHHHHTTC-EEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEeCcCCC--HH--------HHHHHHCCC-EEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEc
Confidence            578999999999999  66        778888874 7999998          6899999999988766 689999997


Q ss_pred             cc
Q psy9773         116 WM  117 (252)
Q Consensus       116 ~~  117 (252)
                      ++
T Consensus       278 m~  279 (375)
T 4auk_A          278 MV  279 (375)
T ss_dssp             CS
T ss_pred             CC
Confidence            75

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.25  E-value=2.2e-06  Score=78.57  Aligned_cols=57  Identities=14%  Similarity=0.086  Sum_probs=41.9

Q ss_pred             EEEEcccccc---CCC-CceeEEEecccccccCChh------------------------------------hHHHHHHH
Q psy9773          94 EVIQNKIENV---ELP-EKVDIIVSEWMGFYLLHES------------------------------------MIDSVIFA  133 (252)
Q Consensus        94 ~~~~~d~~~~---~~~-~~fDlIv~~~~~~~l~~~~------------------------------------~~~~~l~~  133 (252)
                      -|+.+....+   .+| +++|+|+++.++|++...+                                    |+..+|..
T Consensus       131 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~  210 (384)
T 2efj_A          131 CLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI  210 (384)
T ss_dssp             EEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4555544443   445 8999999999999986543                                    23345788


Q ss_pred             HhccccCCeEEEeeccc
Q psy9773         134 RDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       134 l~~~LkpgG~lv~~~~~  150 (252)
                      ..+.|+|||+|++....
T Consensus       211 Ra~eL~pGG~mvl~~~g  227 (384)
T 2efj_A          211 HSEELISRGRMLLTFIC  227 (384)
T ss_dssp             HHHHEEEEEEEEEEEEC
T ss_pred             HHHHhccCCeEEEEEec
Confidence            89999999999998765

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.23  E-value=8.5e-07  Score=84.79  Aligned_cols=98  Identities=9%  Similarity=-0.133  Sum_probs=64.6

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHH--HhhcC---------------CCcEEEeeC-----------------C
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSF--CTKVH---------------PLDHYAPQY-----------------L   91 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~--~a~~g---------------~~~v~gvD~-----------------~   91 (252)
                      ...++.+|||.|||||+.++        ...  +...+               ..+++|+|+                 .
T Consensus       166 ~p~~~~~VlDPaCGSG~fLi--------~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~  237 (541)
T 2ar0_A          166 KPQPREVVQDPAAGTAGFLI--------EADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE  237 (541)
T ss_dssp             CCCTTCCEEETTCTTTHHHH--------HHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred             ccCCCCeEecCCcccchHHH--------HHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence            44567899999999994443        111  11111               136999999                 2


Q ss_pred             c-----eEEEEccccccCC-C-CceeEEEecccccccCC-----------hhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773          92 I-----LEVIQNKIENVEL-P-EKVDIIVSEWMGFYLLH-----------ESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus        92 ~-----i~~~~~d~~~~~~-~-~~fDlIv~~~~~~~l~~-----------~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                      .     +.+.++|....+. + ++||+|++++.......           ......++..+.++|+|||++.+..+..
T Consensus       238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            2     6788888765432 2 68999999775332211           1123367888899999999998877643

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.21  E-value=4.2e-06  Score=73.80  Aligned_cols=102  Identities=12%  Similarity=0.036  Sum_probs=64.4

Q ss_pred             HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeCC---------------ceEEEEcc
Q psy9773          36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQYL---------------ILEVIQNK   99 (252)
Q Consensus        36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~~---------------~i~~~~~d   99 (252)
                      .+..+... ..+.++.+||||||++|  -+        +..+++ .++..|+|+|+.               ++.....+
T Consensus        69 KL~ei~ek-~l~~~g~~vlDLGaaPG--gW--------sqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~  137 (300)
T 3eld_A           69 KIRWLHER-GYLRITGRVLDLGCGRG--GW--------SYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDK  137 (300)
T ss_dssp             HHHHHHHH-TSCCCCEEEEEETCTTC--HH--------HHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECS
T ss_pred             HHHHHHHh-CCCCCCCEEEEcCCCCC--HH--------HHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecC
Confidence            34444444 55678899999999999  66        777775 455678888881               11222222


Q ss_pred             ccccCCC-CceeEEEecccccccCCh-h---hHHHHHHHHhccccCC-eEEEeecc
Q psy9773         100 IENVELP-EKVDIIVSEWMGFYLLHE-S---MIDSVIFARDKFLKPE-GVMYPYKC  149 (252)
Q Consensus       100 ~~~~~~~-~~fDlIv~~~~~~~l~~~-~---~~~~~l~~l~~~Lkpg-G~lv~~~~  149 (252)
                      +.-..++ .++|+|+|+.+.+ .... .   ....+|.-+.++|+|| |.|++-..
T Consensus       138 ~di~~l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF  192 (300)
T 3eld_A          138 SNVFTMPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVL  192 (300)
T ss_dssp             CCTTTSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred             ceeeecCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence            2212222 6899999976544 1111 1   1134467778999999 99998653

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.20  E-value=5.5e-06  Score=71.43  Aligned_cols=65  Identities=28%  Similarity=0.354  Sum_probs=49.1

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCCCC
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVELPE  107 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~~~  107 (252)
                      +.......++.+|||+|||+|  .+        +..++..++.+|+|+|+             .+++++++|+..++++.
T Consensus        23 iv~~~~~~~~~~VLDiG~G~G--~l--------t~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           23 IAEELNIEEGNTVVEVGGGTG--NL--------TKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHTTCCTTCEEEEEESCHH--HH--------HHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred             HHHhcCCCCcCEEEEEcCchH--HH--------HHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence            333345678899999999999  66        77777776678999999             25799999999987762


Q ss_pred             ---ceeEEEecc
Q psy9773         108 ---KVDIIVSEW  116 (252)
Q Consensus       108 ---~fDlIv~~~  116 (252)
                         .+ .|+++.
T Consensus        93 ~~~~~-~vv~Nl  103 (249)
T 3ftd_A           93 LGKEL-KVVGNL  103 (249)
T ss_dssp             SCSSE-EEEEEC
T ss_pred             ccCCc-EEEEEC
Confidence               33 555544

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.20  E-value=3.9e-06  Score=82.57  Aligned_cols=105  Identities=15%  Similarity=0.054  Sum_probs=69.0

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc----------------------------------
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV----------------------------------   80 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~----------------------------------   80 (252)
                      ..+..++.......++.+|||++||||  ++        .+.++..                                  
T Consensus       176 e~LAa~ll~~~~~~~~~~llDP~CGSG--t~--------lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~  245 (703)
T 3v97_A          176 ETLAAAIVMRSGWQPGTPLLDPMCGSG--TL--------LIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQ  245 (703)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTS--HH--------HHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCeEEecCCCCc--HH--------HHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHH
Confidence            345556665566678889999999999  65        3332221                                  


Q ss_pred             ---------CCCcEEEeeC------------------CceEEEEccccccCCC---CceeEEEecccc-cccCChhhHHH
Q psy9773          81 ---------HPLDHYAPQY------------------LILEVIQNKIENVELP---EKVDIIVSEWMG-FYLLHESMIDS  129 (252)
Q Consensus        81 ---------g~~~v~gvD~------------------~~i~~~~~d~~~~~~~---~~fDlIv~~~~~-~~l~~~~~~~~  129 (252)
                               ...+++|+|+                  ..+.|.++|+.++..+   ++||+|++++-. ..+.....+..
T Consensus       246 ~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~  325 (703)
T 3v97_A          246 TRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIA  325 (703)
T ss_dssp             HHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHH
T ss_pred             HHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHH
Confidence                     1146999999                  3589999999988544   389999997642 12222234444


Q ss_pred             HHHHH---hccccCCeEEEeecc
Q psy9773         130 VIFAR---DKFLKPEGVMYPYKC  149 (252)
Q Consensus       130 ~l~~l---~~~LkpgG~lv~~~~  149 (252)
                      +...+   .+.+.|||.+++.++
T Consensus       326 ly~~l~~~lk~~~~g~~~~ilt~  348 (703)
T 3v97_A          326 LHSLLGRIMKNQFGGWNLSLFSA  348 (703)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEEES
T ss_pred             HHHHHHHHHHhhCCCCeEEEEeC
Confidence            44444   445568999988664

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.19  E-value=4.7e-06  Score=73.78  Aligned_cols=96  Identities=16%  Similarity=0.129  Sum_probs=69.9

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC----------------------CceEEEEccccccC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY----------------------LILEVIQNKIENVE  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~----------------------~~i~~~~~d~~~~~  104 (252)
                      ...++||-||.|.|  ..        ...+.+. +..+|+.+|+                      ++++++.+|...+-
T Consensus        82 p~pk~VLIiGgGdG--~~--------~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l  151 (294)
T 3o4f_A           82 GHAKHVLIIGGGDG--AM--------LREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV  151 (294)
T ss_dssp             SCCCEEEEESCTTS--HH--------HHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTT
T ss_pred             CCCCeEEEECCCch--HH--------HHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHH
Confidence            55689999999999  54        4555554 3468999999                      68999999998885


Q ss_pred             CC--CceeEEEecccccccCCh-hhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773         105 LP--EKVDIIVSEWMGFYLLHE-SMIDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus       105 ~~--~~fDlIv~~~~~~~l~~~-~~~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                      ..  ++||+|+........+.. ---..++..+++.|+|||+++....+.+.
T Consensus       152 ~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~  203 (294)
T 3o4f_A          152 NQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFL  203 (294)
T ss_dssp             SCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSS
T ss_pred             hhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCccc
Confidence            43  789999985432111111 02246888999999999999998765443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.18  E-value=7.7e-06  Score=72.08  Aligned_cols=101  Identities=11%  Similarity=-0.019  Sum_probs=68.6

Q ss_pred             HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC----------------CceEEEEc
Q psy9773          36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------------LILEVIQN   98 (252)
Q Consensus        36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------------~~i~~~~~   98 (252)
                      .+..+..+ ..+.++.+||||||++|  -+        +.+++. .|+..|+|+|+                ..+.+..+
T Consensus        82 KL~ei~~~-~~l~~~~~VlDLGaapG--Gw--------sq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~  150 (321)
T 3lkz_A           82 KLRWLVER-RFLEPVGKVIDLGCGRG--GW--------CYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSG  150 (321)
T ss_dssp             HHHHHHHT-TSCCCCEEEEEETCTTC--HH--------HHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECS
T ss_pred             HHHHHHHh-cCCCCCCEEEEeCCCCC--cH--------HHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEec
Confidence            34444444 56778889999999999  66        665554 66678999999                23667776


Q ss_pred             -cccccCCCCceeEEEecccccccCChh-hH---HHHHHHHhccccCC-eEEEeecc
Q psy9773          99 -KIENVELPEKVDIIVSEWMGFYLLHES-MI---DSVIFARDKFLKPE-GVMYPYKC  149 (252)
Q Consensus        99 -d~~~~~~~~~fDlIv~~~~~~~l~~~~-~~---~~~l~~l~~~Lkpg-G~lv~~~~  149 (252)
                       |+..++. .++|+|+|+.. ..-++.. +-   ..+|.-+.++|++| |-|++-..
T Consensus       151 ~Dv~~l~~-~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl  205 (321)
T 3lkz_A          151 VDVFYRPS-ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVL  205 (321)
T ss_dssp             CCTTSSCC-CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred             cCHhhCCC-CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEc
Confidence             7766654 67999999654 3333221 22   23566667889888 88877543

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.13  E-value=3.6e-06  Score=72.90  Aligned_cols=99  Identities=10%  Similarity=-0.013  Sum_probs=63.2

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC----CcEEEee--C---C----ce---EEEEc-
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP----LDHYAPQ--Y---L----IL---EVIQN-   98 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~----~~v~gvD--~---~----~i---~~~~~-   98 (252)
                      +..+..+ ..+.++.+||||||+.|  -+        +..++.. +.    ..++|+|  +   .    .+   .|+++ 
T Consensus        62 L~EIdeK-~likpg~~VVDLGaAPG--GW--------SQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~  130 (269)
T 2px2_A           62 LRWLVER-RFVQPIGKVVDLGCGRG--GW--------SYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGV  130 (269)
T ss_dssp             HHHHHHT-TSCCCCEEEEEETCTTS--HH--------HHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSC
T ss_pred             HHHHHHc-CCCCCCCEEEEcCCCCC--HH--------HHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccC
Confidence            3333333 46788999999999999  77        8888775 11    2356667  3   1    22   34446 


Q ss_pred             cccccCCCCceeEEEecccccccCChh-hHH---HHHHHHhccccCCe-EEEeec
Q psy9773          99 KIENVELPEKVDIIVSEWMGFYLLHES-MID---SVIFARDKFLKPEG-VMYPYK  148 (252)
Q Consensus        99 d~~~~~~~~~fDlIv~~~~~~~l~~~~-~~~---~~l~~l~~~LkpgG-~lv~~~  148 (252)
                      |+..+. +.++|+|+|..+.. ..+.. |-.   .+|.-+.++|+||| .|++-.
T Consensus       131 Df~~~~-~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKV  183 (269)
T 2px2_A          131 DVFYKP-SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKI  183 (269)
T ss_dssp             CGGGSC-CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CccCCC-CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEE
Confidence            988754 35799999977543 21111 111   25666678999999 887744

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=98.10  E-value=1.4e-05  Score=70.41  Aligned_cols=106  Identities=11%  Similarity=0.045  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHh-CCCCCCCCEEEEEcC------CcCchhhhhccCccchHHHhhcCCC--cEEEeeC-----CceEEE
Q psy9773          31 TVRNEAYRAAICD-NPNIFAGKTVLDVGT------GTGKSILLQGHGVDHHSFCTKVHPL--DHYAPQY-----LILEVI   96 (252)
Q Consensus        31 ~~~~~~~~~~l~~-~~~~~~~~~VLDlGc------GtG~~~ll~~~~v~~s~~~a~~g~~--~v~gvD~-----~~i~~~   96 (252)
                      ...+..+...|.. ..-.+.|.+|||+||      ..|            +..+++.++.  .|+++|+     ..-.++
T Consensus        90 v~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APG------------S~VLr~~~p~g~~VVavDL~~~~sda~~~I  157 (344)
T 3r24_A           90 VAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPG------------TAVLRQWLPTGTLLVDSDLNDFVSDADSTL  157 (344)
T ss_dssp             HHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHH------------HHHHHHHSCTTCEEEEEESSCCBCSSSEEE
T ss_pred             HHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCc------------HHHHHHhCCCCcEEEEeeCcccccCCCeEE
Confidence            3456666666643 234567899999996      556            4344444443  7999999     222569


Q ss_pred             EccccccCCCCceeEEEecccccccCC--h------hhHHHHHHHHhccccCCeEEEeec
Q psy9773          97 QNKIENVELPEKVDIIVSEWMGFYLLH--E------SMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        97 ~~d~~~~~~~~~fDlIv~~~~~~~l~~--~------~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ++|+......++||+|+|.++....-+  .      .-.+.++.-+.+.|+|||.|++-.
T Consensus       158 qGD~~~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV  217 (344)
T 3r24_A          158 IGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  217 (344)
T ss_dssp             ESCGGGEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EccccccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence            999887766688999999655322111  1      125566666788999999999764

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.09  E-value=9.1e-06  Score=64.72  Aligned_cols=93  Identities=15%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             HHHHHHHhCCCCCCCCEEEEEcCCcCchh-hhhccCccchHHHhh-cCCCcEEEeeC--CceEEEEccccccCCC--Cce
Q psy9773          36 AYRAAICDNPNIFAGKTVLDVGTGTGKSI-LLQGHGVDHHSFCTK-VHPLDHYAPQY--LILEVIQNKIENVELP--EKV  109 (252)
Q Consensus        36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~-ll~~~~v~~s~~~a~-~g~~~v~gvD~--~~i~~~~~d~~~~~~~--~~f  109 (252)
                      .+.+.|.+  ...++.+|||||||+|  . .        +..+++ .| ..|+++|+  ..+.+++.|+.+....  ..|
T Consensus        24 ~LaeYI~~--~~~~~~rVlEVG~G~g--~~v--------A~~La~~~g-~~V~atDInp~Av~~v~dDiF~P~~~~Y~~~   90 (153)
T 2k4m_A           24 DLAVYIIR--CSGPGTRVVEVGAGRF--LYV--------SDYIRKHSK-VDLVLTDIKPSHGGIVRDDITSPRMEIYRGA   90 (153)
T ss_dssp             HHHHHHHH--HSCSSSEEEEETCTTC--CHH--------HHHHHHHSC-CEEEEECSSCSSTTEECCCSSSCCHHHHTTE
T ss_pred             HHHHHHHh--cCCCCCcEEEEccCCC--hHH--------HHHHHHhCC-CeEEEEECCccccceEEccCCCCcccccCCc
Confidence            34455543  2355689999999999  4 3        567775 66 46999999  4455999999885544  589


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      |+|.+      +...+++...+.++.+.+.-+-++.+-
T Consensus        91 DLIYs------irPP~El~~~i~~lA~~v~adliI~pL  122 (153)
T 2k4m_A           91 ALIYS------IRPPAEIHSSLMRVADAVGARLIIKPL  122 (153)
T ss_dssp             EEEEE------ESCCTTTHHHHHHHHHHHTCEEEEECB
T ss_pred             CEEEE------cCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence            99977      333456666676666655444444433

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.02  E-value=5.6e-06  Score=72.71  Aligned_cols=52  Identities=15%  Similarity=0.163  Sum_probs=41.1

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCc---EEEeeC-------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLD---HYAPQY-------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~---v~gvD~-------------~~i~~~~~d~~~~~~~  106 (252)
                      ....++.+|||||||+|  .+        +..++..+..+   |+|+|+             .+++++++|+..++++
T Consensus        38 ~~~~~~~~VLEIG~G~G--~l--------t~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           38 IRPERGERMVEIGPGLG--AL--------TGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG  105 (279)
T ss_dssp             HCCCTTCEEEEECCTTS--TT--------HHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred             cCCCCcCEEEEEccccH--HH--------HHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence            35677899999999999  66        66666654322   999999             3689999999998765

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.98  E-value=3.2e-06  Score=73.33  Aligned_cols=62  Identities=21%  Similarity=0.040  Sum_probs=48.7

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------------CceEEEEcccc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------------LILEVIQNKIE  101 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------------~~i~~~~~d~~  101 (252)
                      ..++.+|||+|||+|  .+        ++.++..+ .+|+|+|+                         .+++++++|+.
T Consensus        81 ~~~~~~VLDlgcG~G--~~--------a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~  149 (258)
T 2r6z_A           81 HTAHPTVWDATAGLG--RD--------SFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAA  149 (258)
T ss_dssp             GGGCCCEEETTCTTC--HH--------HHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHH
T ss_pred             cCCcCeEEEeeCccC--HH--------HHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHH
Confidence            456789999999999  76        77777776 47999998                         23899999998


Q ss_pred             ccC--CC---CceeEEEeccccc
Q psy9773         102 NVE--LP---EKVDIIVSEWMGF  119 (252)
Q Consensus       102 ~~~--~~---~~fDlIv~~~~~~  119 (252)
                      .+.  ++   ++||+|+++++..
T Consensus       150 ~~l~~~~~~~~~fD~V~~dP~~~  172 (258)
T 2r6z_A          150 EQMPALVKTQGKPDIVYLDPMYP  172 (258)
T ss_dssp             HHHHHHHHHHCCCSEEEECCCC-
T ss_pred             HHHHhhhccCCCccEEEECCCCC
Confidence            752  23   5899999987643

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.96  E-value=5.8e-05  Score=72.14  Aligned_cols=97  Identities=14%  Similarity=-0.006  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHh--hcCCCcEEEeeC-------------------CceEEEEcccccc--
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCT--KVHPLDHYAPQY-------------------LILEVIQNKIENV--  103 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a--~~g~~~v~gvD~-------------------~~i~~~~~d~~~~--  103 (252)
                      ..++.+|||.+||||+.++        ...-.  ..+..+++|+|+                   .++.+.++|....  
T Consensus       219 ~~~~~~VlDPaCGSG~fLi--------~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~  290 (542)
T 3lkd_A          219 DKQGFTLYDATMGSGSLLL--------NAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDW  290 (542)
T ss_dssp             TCTTCEEEETTCTTSTTGG--------GHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCS
T ss_pred             CCCCCEEeecccchhHHHH--------HHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccc
Confidence            3467899999999994443        22111  112357999999                   2457889998766  


Q ss_pred             CC--CCceeEEEecccccccCC--------------------hh-hHHHHHHHHhcccc-CCeEEEeeccccc
Q psy9773         104 EL--PEKVDIIVSEWMGFYLLH--------------------ES-MIDSVIFARDKFLK-PEGVMYPYKCILH  152 (252)
Q Consensus       104 ~~--~~~fDlIv~~~~~~~l~~--------------------~~-~~~~~l~~l~~~Lk-pgG~lv~~~~~~~  152 (252)
                      +.  ..+||+|++++-.. ..+                    .. .-..++..+.+.|+ |||++.+..+..+
T Consensus       291 p~~~~~~fD~IvaNPPf~-~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~  362 (542)
T 3lkd_A          291 PTQEPTNFDGVLMNPPYS-AKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGV  362 (542)
T ss_dssp             CCSSCCCBSEEEECCCTT-CCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHH
T ss_pred             cccccccccEEEecCCcC-CccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchH
Confidence            22  26899999965432 111                    00 01247888899999 9999987776543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.91  E-value=3.9e-05  Score=64.27  Aligned_cols=82  Identities=7%  Similarity=0.052  Sum_probs=56.4

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------C-----ceEEEEcccccc----
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------L-----ILEVIQNKIENV----  103 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~-----~i~~~~~d~~~~----  103 (252)
                      ...++||++|||..  +          +.+++....+|+++|.               .     +|+++.+|+...    
T Consensus        29 ~~a~~VLEiGtGyS--T----------l~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg   96 (202)
T 3cvo_A           29 EEAEVILEYGSGGS--T----------VVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWG   96 (202)
T ss_dssp             HHCSEEEEESCSHH--H----------HHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGG
T ss_pred             hCCCEEEEECchHH--H----------HHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhccc
Confidence            35679999999753  4          3445432368999998               2     588999996542    


Q ss_pred             -----------C--------CC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         104 -----------E--------LP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       104 -----------~--------~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                                 +        ..  ++||+|+...-        .....+..+.++|+|||++++.+.
T Consensus        97 ~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~--------k~~~~~~~~l~~l~~GG~Iv~DNv  155 (202)
T 3cvo_A           97 HPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR--------FRVGCALATAFSITRPVTLLFDDY  155 (202)
T ss_dssp             CBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS--------SHHHHHHHHHHHCSSCEEEEETTG
T ss_pred             ccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC--------CchhHHHHHHHhcCCCeEEEEeCC
Confidence                       1        22  68999988542        112445556699999999988764

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.91  E-value=7.2e-06  Score=70.91  Aligned_cols=58  Identities=14%  Similarity=0.133  Sum_probs=44.4

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCc--EEEeeC---------------CceEEEEccccccCCCC-
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLD--HYAPQY---------------LILEVIQNKIENVELPE-  107 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~--v~gvD~---------------~~i~~~~~d~~~~~~~~-  107 (252)
                      ...++.+|||+|||+|  .+        +. ++. + .+  |+|+|+               .+++++++|+..++++. 
T Consensus        18 ~~~~~~~VLEIG~G~G--~l--------t~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~   84 (252)
T 1qyr_A           18 NPQKGQAMVEIGPGLA--AL--------TE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGEL   84 (252)
T ss_dssp             CCCTTCCEEEECCTTT--TT--------HH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHH
T ss_pred             CCCCcCEEEEECCCCc--HH--------HH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHh
Confidence            4567889999999999  77        66 543 3 46  999999               37899999999886542 


Q ss_pred             -----ceeEEEecc
Q psy9773         108 -----KVDIIVSEW  116 (252)
Q Consensus       108 -----~fDlIv~~~  116 (252)
                           ..+.|+++.
T Consensus        85 ~~~~~~~~~vvsNl   98 (252)
T 1qyr_A           85 AEKMGQPLRVFGNL   98 (252)
T ss_dssp             HHHHTSCEEEEEEC
T ss_pred             hcccCCceEEEECC
Confidence                 346777754

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.87  E-value=1.1e-05  Score=77.23  Aligned_cols=92  Identities=15%  Similarity=0.048  Sum_probs=56.9

Q ss_pred             EEEEEcCCcCchhhhhccCccchHH--Hhh----cC--------CCcEEEeeC------------------CceEEEEcc
Q psy9773          52 TVLDVGTGTGKSILLQGHGVDHHSF--CTK----VH--------PLDHYAPQY------------------LILEVIQNK   99 (252)
Q Consensus        52 ~VLDlGcGtG~~~ll~~~~v~~s~~--~a~----~g--------~~~v~gvD~------------------~~i~~~~~d   99 (252)
                      +|||.+||||+.++        ...  +..    .+        ..+++|+|+                  .++.+.++|
T Consensus       247 ~VlDPaCGSG~fLi--------~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gD  318 (544)
T 3khk_A          247 RVYDPAMGSGGFFV--------SSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNAD  318 (544)
T ss_dssp             EEEESSCTTCHHHH--------HHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCC
T ss_pred             eEeCcccCcCcHHH--------HHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccc
Confidence            99999999994443        111  000    00        236999999                  223336667


Q ss_pred             ccccCC-C-CceeEEEeccccccc-------------------------CChh-hHHHHHHHHhccccCCeEEEeecccc
Q psy9773         100 IENVEL-P-EKVDIIVSEWMGFYL-------------------------LHES-MIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus       100 ~~~~~~-~-~~fDlIv~~~~~~~l-------------------------~~~~-~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                      ....+. + .+||+|++++-...-                         +... .-..++..+.+.|+|||++.+..+..
T Consensus       319 tL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          319 SFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             TTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred             hhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence            654432 2 689999997643321                         0000 11257888899999999998877653

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.86  E-value=1.6e-05  Score=69.04  Aligned_cols=63  Identities=14%  Similarity=0.024  Sum_probs=49.2

Q ss_pred             CCCCC--CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC--------------------------ceEEEE
Q psy9773          46 NIFAG--KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL--------------------------ILEVIQ   97 (252)
Q Consensus        46 ~~~~~--~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~--------------------------~i~~~~   97 (252)
                      ...++  .+|||+|||+|  ..        ++.+++.|+ +|+++|+.                          ++++++
T Consensus        83 ~l~~g~~~~VLDl~~G~G--~d--------al~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~  151 (258)
T 2oyr_A           83 GIKGDYLPDVVDATAGLG--RD--------AFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (258)
T ss_dssp             TCBTTBCCCEEETTCTTC--HH--------HHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred             cccCCCCCEEEEcCCcCC--HH--------HHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence            34566  89999999999  66        777787775 69999991                          378999


Q ss_pred             ccccccC--CCCceeEEEeccccc
Q psy9773          98 NKIENVE--LPEKVDIIVSEWMGF  119 (252)
Q Consensus        98 ~d~~~~~--~~~~fDlIv~~~~~~  119 (252)
                      +|..++.  .+.+||+|+++++..
T Consensus       152 ~D~~~~L~~~~~~fDvV~lDP~y~  175 (258)
T 2oyr_A          152 ASSLTALTDITPRPQVVYLDPMFP  175 (258)
T ss_dssp             SCHHHHSTTCSSCCSEEEECCCCC
T ss_pred             CCHHHHHHhCcccCCEEEEcCCCC
Confidence            9988753  235799999988753

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.84  E-value=0.0001  Score=73.22  Aligned_cols=97  Identities=9%  Similarity=0.033  Sum_probs=61.0

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C---CCcEEEeeCCc-----------------------eEEEEcc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H---PLDHYAPQYLI-----------------------LEVIQNK   99 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g---~~~v~gvD~~~-----------------------i~~~~~d   99 (252)
                      ..++.+|||.|||+|  .+        ...++.. +   ..+++|+|+..                       ..+...|
T Consensus       319 l~~g~rVLDPaCGSG--~F--------LIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD  388 (878)
T 3s1s_A          319 LTEDEVISDPAAGSG--NL--------LATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGED  388 (878)
T ss_dssp             CCTTCEEEETTCTTS--HH--------HHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCC
T ss_pred             CCCCCEEEECCCCcc--HH--------HHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecc
Confidence            356789999999999  44        3333332 1   24689999810                       1344444


Q ss_pred             ccccCC--CCceeEEEecccccccC-Ch-------------------------hhHHHHHHHHhccccCCeEEEeecccc
Q psy9773         100 IENVEL--PEKVDIIVSEWMGFYLL-HE-------------------------SMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus       100 ~~~~~~--~~~fDlIv~~~~~~~l~-~~-------------------------~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                      +.....  .+.||+|++++-..... ..                         .....++..+.++|+|||++.+..+..
T Consensus       389 ~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          389 VCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             GGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred             hhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence            444321  26899999977531110 00                         013356778889999999999988765


Q ss_pred             cc
Q psy9773         152 HS  153 (252)
Q Consensus       152 ~~  153 (252)
                      +.
T Consensus       469 ~L  470 (878)
T 3s1s_A          469 YL  470 (878)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.79  E-value=1.8e-05  Score=70.29  Aligned_cols=61  Identities=16%  Similarity=0.094  Sum_probs=46.8

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC----------------CceEEEEccccccCC--C
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY----------------LILEVIQNKIENVEL--P  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~----------------~~i~~~~~d~~~~~~--~  106 (252)
                      ...++.+|||+|||+|  .+        +..++... ..+|+|+|+                .++.++++|+..++.  +
T Consensus        23 ~~~~g~~vLD~g~G~G--~~--------s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~   92 (301)
T 1m6y_A           23 KPEDEKIILDCTVGEG--GH--------SRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK   92 (301)
T ss_dssp             CCCTTCEEEETTCTTS--HH--------HHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred             CCCCCCEEEEEeCCcC--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence            3567899999999999  55        55666542 368999999                378999999988742  1


Q ss_pred             ----CceeEEEecc
Q psy9773         107 ----EKVDIIVSEW  116 (252)
Q Consensus       107 ----~~fDlIv~~~  116 (252)
                          .+||+|+++.
T Consensus        93 ~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           93 TLGIEKVDGILMDL  106 (301)
T ss_dssp             HTTCSCEEEEEEEC
T ss_pred             hcCCCCCCEEEEcC
Confidence                4799999855

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.71  E-value=5e-05  Score=69.36  Aligned_cols=92  Identities=17%  Similarity=0.189  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------------CceEEEEcccccc
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------------LILEVIQNKIENV  103 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------------~~i~~~~~d~~~~  103 (252)
                      ++++||=+|.|.|  ..        ...+.+.+..+|+.+|+                         .+++++.+|...+
T Consensus       205 ~pkrVLIIGgGdG--~~--------~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~f  274 (381)
T 3c6k_A          205 TGKDVLILGGGDG--GI--------LCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV  274 (381)
T ss_dssp             TTCEEEEEECTTC--HH--------HHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH
T ss_pred             CCCeEEEECCCcH--HH--------HHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHH
Confidence            4689999999999  54        45566666678999999                         3477888888765


Q ss_pred             CC-----CCceeEEEecccccccC------Ch-hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         104 EL-----PEKVDIIVSEWMGFYLL------HE-SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       104 ~~-----~~~fDlIv~~~~~~~l~------~~-~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      -.     .++||+||.........      .. .--..++..++++|+|||+++....+
T Consensus       275 l~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s  333 (381)
T 3c6k_A          275 LKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC  333 (381)
T ss_dssp             HHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             HHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            31     25799999854211110      01 12356788899999999999987654

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.68  E-value=2.7e-05  Score=71.99  Aligned_cols=58  Identities=17%  Similarity=0.138  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------C-----ceEEEEcccccc-CC-C-
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------L-----ILEVIQNKIENV-EL-P-  106 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~-----~i~~~~~d~~~~-~~-~-  106 (252)
                      +|.+|||+|||+|  ..        +..+++.+ .+|+++|+              .     +++++++|+.++ +. + 
T Consensus        93 ~g~~VLDLgcG~G--~~--------al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~  161 (410)
T 3ll7_A           93 EGTKVVDLTGGLG--ID--------FIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKT  161 (410)
T ss_dssp             TTCEEEESSCSSS--HH--------HHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHH
T ss_pred             CCCEEEEeCCCch--HH--------HHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccC
Confidence            4899999999999  66        66777765 58999999              2     488999999885 22 1 


Q ss_pred             CceeEEEeccc
Q psy9773         107 EKVDIIVSEWM  117 (252)
Q Consensus       107 ~~fDlIv~~~~  117 (252)
                      ++||+|++++.
T Consensus       162 ~~fDvV~lDPP  172 (410)
T 3ll7_A          162 FHPDYIYVDPA  172 (410)
T ss_dssp             HCCSEEEECCE
T ss_pred             CCceEEEECCC
Confidence            57999999654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.65  E-value=5.6e-05  Score=68.66  Aligned_cols=98  Identities=17%  Similarity=0.084  Sum_probs=66.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------------CceEEEEcccc
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------------LILEVIQNKIE  101 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------------~~i~~~~~d~~  101 (252)
                      ...+|.+|||++||.|+=++          .++..+. ..++++|+                       .++.+...|..
T Consensus       145 ~~~pg~~VLD~CAaPGGKT~----------~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~  214 (359)
T 4fzv_A          145 GLQPGDIVLDLCAAPGGKTL----------ALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGR  214 (359)
T ss_dssp             CCCTTEEEEESSCTTCHHHH----------HHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGG
T ss_pred             CCCCCCEEEEecCCccHHHH----------HHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchh
Confidence            46789999999999995443          4444332 46999998                       25677888887


Q ss_pred             ccC--CCCceeEEEeccc-cc---ccC-Chh---------h-------HHHHHHHHhccccCCeEEEeecccccc
Q psy9773         102 NVE--LPEKVDIIVSEWM-GF---YLL-HES---------M-------IDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus       102 ~~~--~~~~fDlIv~~~~-~~---~l~-~~~---------~-------~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                      .+.  .++.||.|++..- +.   ... ..+         +       -..+|..+.++|||||+|+-+++++..
T Consensus       215 ~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~  289 (359)
T 4fzv_A          215 KWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH  289 (359)
T ss_dssp             GHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred             hcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence            764  2378999998321 11   110 000         1       136788888999999999999887543

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.63  E-value=5.6e-05  Score=65.52  Aligned_cols=56  Identities=16%  Similarity=0.267  Sum_probs=36.4

Q ss_pred             ceEEEEcccccc-C-CCC----ceeEEEecccccccCChh-hHHHHHHHHhccccCCeEEEeec
Q psy9773          92 ILEVIQNKIENV-E-LPE----KVDIIVSEWMGFYLLHES-MIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        92 ~i~~~~~d~~~~-~-~~~----~fDlIv~~~~~~~l~~~~-~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +++++.+|+.+. + .+.    .||+|+.......- +.. --..+|..+.++|+|||+|+..+
T Consensus       151 ~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~-~p~lw~~~~l~~l~~~L~pGG~l~tys  213 (257)
T 2qy6_A          151 TLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK-NPDMWTQNLFNAMARLARPGGTLATFT  213 (257)
T ss_dssp             EEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT-CGGGCCHHHHHHHHHHEEEEEEEEESC
T ss_pred             EEEEEECcHHHHHhhcccccCCeEEEEEECCCCccc-ChhhcCHHHHHHHHHHcCCCcEEEEEe
Confidence            355778888764 2 122    79999985421110 111 12468999999999999998644

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.60  E-value=0.00027  Score=62.07  Aligned_cols=91  Identities=4%  Similarity=-0.031  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC-----------------------------------
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY-----------------------------------   90 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~-----------------------------------   90 (252)
                      ....+||++|+.+|.+.+      +++..+...+  ..+++++|.                                   
T Consensus       105 ~~pg~IlEiGv~~G~Sai------~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar  178 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACI------LMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVR  178 (282)
T ss_dssp             TCCCEEEEECCTTSHHHH------HHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHH
T ss_pred             CCCCcEEEeecCchHHHH------HHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHH
Confidence            456799999999997665      1111121111  357888883                                   


Q ss_pred             ----------CceEEEEccccccCC--C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          91 ----------LILEVIQNKIENVEL--P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        91 ----------~~i~~~~~d~~~~~~--~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                                .+|+++.+++.+.-.  + ++||+|+...-     .-......|..+.++|+|||++++...
T Consensus       179 ~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD-----~y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          179 RNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD-----LYESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             HHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC-----SHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             HHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC-----ccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence                      358899999876522  2 68999988542     112355788999999999999999886

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.25  E-value=0.0009  Score=63.66  Aligned_cols=113  Identities=12%  Similarity=-0.029  Sum_probs=60.4

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhh-----hhccCccchHHHhhcCCCcEEEeeC-----------------CceE
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSIL-----LQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILE   94 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~l-----l~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~   94 (252)
                      +.+.|.......++.+|+|.+||||+.++     |...+......-... ...++|+|+                 ....
T Consensus       205 Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~-~~~i~G~E~~~~~~~la~mNl~lhg~~~~~  283 (530)
T 3ufb_A          205 VVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQ-ESSIFGGEAKSLPYLLVQMNLLLHGLEYPR  283 (530)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHH-TCCEEEECCSHHHHHHHHHHHHHHTCSCCE
T ss_pred             HHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHh-hhhhhhhhccHHHHHHHHHHHHhcCCcccc
Confidence            33344433345677899999999995443     000000000000001 135899998                 2345


Q ss_pred             EEEccccccCCC-----CceeEEEecccccccCC-------------hhhHHHHHHHHhccc-------cCCeEEEeecc
Q psy9773          95 VIQNKIENVELP-----EKVDIIVSEWMGFYLLH-------------ESMIDSVIFARDKFL-------KPEGVMYPYKC  149 (252)
Q Consensus        95 ~~~~d~~~~~~~-----~~fDlIv~~~~~~~l~~-------------~~~~~~~l~~l~~~L-------kpgG~lv~~~~  149 (252)
                      +..+|....+..     .+||+|++++-...-..             ...-..++..+.+.|       +|||++.+..+
T Consensus       284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP  363 (530)
T 3ufb_A          284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP  363 (530)
T ss_dssp             EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred             ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence            667776554322     47999999775321110             001123444455555       47999988776


Q ss_pred             c
Q psy9773         150 I  150 (252)
Q Consensus       150 ~  150 (252)
                      .
T Consensus       364 ~  364 (530)
T 3ufb_A          364 N  364 (530)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.85  E-value=0.0064  Score=53.16  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=27.5

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      .++.+|||++||+|  +.        +..++..| .+++|+|+
T Consensus       234 ~~~~~vlD~f~GsG--t~--------~~~a~~~g-~~~~g~e~  265 (297)
T 2zig_A          234 FVGDVVLDPFAGTG--TT--------LIAAARWG-RRALGVEL  265 (297)
T ss_dssp             CTTCEEEETTCTTT--HH--------HHHHHHTT-CEEEEEES
T ss_pred             CCCCEEEECCCCCC--HH--------HHHHHHcC-CeEEEEeC
Confidence            67899999999999  77        67777776 57999998

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=95.75  E-value=0.0074  Score=52.86  Aligned_cols=98  Identities=12%  Similarity=0.011  Sum_probs=68.7

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEcc
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNK   99 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d   99 (252)
                      ..|...+..    ..+..+||+-+|||  .+        ++.+.+. ..+++.+|.               .++.+++.|
T Consensus        81 ~~yf~~l~~----~n~~~~LDlfaGSG--aL--------giEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D  145 (283)
T 2oo3_A           81 LEYISVIKQ----INLNSTLSYYPGSP--YF--------AINQLRS-QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTD  145 (283)
T ss_dssp             HHHHHHHHH----HSSSSSCCEEECHH--HH--------HHHHSCT-TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSC
T ss_pred             HHHHHHHHH----hcCCCceeEeCCcH--HH--------HHHHcCC-CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCc
Confidence            345555543    34567999999999  77        7777774 478999999               468889999


Q ss_pred             cccc-C---CC-CceeEEEecccccccCChhhHHHHHHHHhc--cccCCeEEEeeccc
Q psy9773         100 IENV-E---LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDK--FLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~-~---~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~--~LkpgG~lv~~~~~  150 (252)
                      .... .   .+ .+||+|++.+-...   ..+...++..+.+  .+.|+|++++..+-
T Consensus       146 ~~~~L~~l~~~~~~fdLVfiDPPYe~---k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi  200 (283)
T 2oo3_A          146 GVSKLNALLPPPEKRGLIFIDPSYER---KEEYKEIPYAIKNAYSKFSTGLYCVWYPV  200 (283)
T ss_dssp             HHHHHHHHCSCTTSCEEEEECCCCCS---TTHHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred             HHHHHHHhcCCCCCccEEEECCCCCC---CcHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence            6543 1   22 57999999874221   1356666666544  56799999988775

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=95.73  E-value=0.0096  Score=52.17  Aligned_cols=60  Identities=17%  Similarity=0.105  Sum_probs=44.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCC-----C-
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVEL-----P-  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~-----~-  106 (252)
                      ...++..+||++||.|+.+.          .+++.+ .+|+|+|.             .++.++++++.++..     . 
T Consensus        19 ~~~~gg~~VD~T~G~GGHS~----------~il~~~-g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~   87 (285)
T 1wg8_A           19 AVRPGGVYVDATLGGAGHAR----------GILERG-GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV   87 (285)
T ss_dssp             TCCTTCEEEETTCTTSHHHH----------HHHHTT-CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred             CCCCCCEEEEeCCCCcHHHH----------HHHHCC-CEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCC
Confidence            35678999999999996554          444443 57999999             268888888887732     1 


Q ss_pred             CceeEEEecc
Q psy9773         107 EKVDIIVSEW  116 (252)
Q Consensus       107 ~~fDlIv~~~  116 (252)
                      +++|.|+++.
T Consensus        88 ~~vDgIL~DL   97 (285)
T 1wg8_A           88 ERVDGILADL   97 (285)
T ss_dssp             SCEEEEEEEC
T ss_pred             CCcCEEEeCC
Confidence            4688888744

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.16  E-value=0.057  Score=48.99  Aligned_cols=56  Identities=16%  Similarity=0.035  Sum_probs=44.1

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCC---------CCce
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVEL---------PEKV  109 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~---------~~~f  109 (252)
                      .++|||.||.|  .+        ++.+...|...+.++|+            ....++++|+.++..         ...+
T Consensus         3 ~~vidLFsG~G--Gl--------slG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~   72 (376)
T 3g7u_A            3 LNVIDLFSGVG--GL--------SLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPI   72 (376)
T ss_dssp             CEEEEETCTTS--HH--------HHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCC
T ss_pred             CeEEEEccCcC--HH--------HHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCe
Confidence            58999999999  65        66667778777889999            456788999988742         2579


Q ss_pred             eEEEecc
Q psy9773         110 DIIVSEW  116 (252)
Q Consensus       110 DlIv~~~  116 (252)
                      |+|+..+
T Consensus        73 D~i~ggp   79 (376)
T 3g7u_A           73 DGIIGGP   79 (376)
T ss_dssp             CEEEECC
T ss_pred             eEEEecC
Confidence            9999844

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=94.93  E-value=0.019  Score=63.79  Aligned_cols=91  Identities=20%  Similarity=0.050  Sum_probs=37.6

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHh-h-cC--CCcEEEeeCCc------------eEEEE--cccccc-C-CCC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCT-K-VH--PLDHYAPQYLI------------LEVIQ--NKIENV-E-LPE  107 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a-~-~g--~~~v~gvD~~~------------i~~~~--~d~~~~-~-~~~  107 (252)
                      .+..+||++|.|+|+.+.        .++.. . .+  ..+++.+|+..            ..+..  .|.... + .+.
T Consensus      1239 ~~~~~ilEigagtg~~t~--------~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~ 1310 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYS--------RIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLG 1310 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTT--------THHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC----
T ss_pred             CCCceEEEECCCccHHHH--------HHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCC
Confidence            356799999999995443        21111 0 00  12466666621            11111  122221 1 126


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +||+||+..++|..   +++...|.+++++|+|||++++...
T Consensus      1311 ~ydlvia~~vl~~t---~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1311 KADLLVCNCALATL---GDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             -CCEEEEECC-----------------------CCEEEEEEC
T ss_pred             ceeEEEEccccccc---ccHHHHHHHHHHhcCCCcEEEEEec
Confidence            79999997775544   6778899999999999999988653

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=94.93  E-value=0.083  Score=46.30  Aligned_cols=55  Identities=20%  Similarity=0.171  Sum_probs=42.6

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCCC--CceeEEEec
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVELP--EKVDIIVSE  115 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~--~~fDlIv~~  115 (252)
                      .+||||-||.|  -+        ++-+.+.|..-+.++|+           ..-.++.+|+.++...  ..+|+|+..
T Consensus         1 mkvidLFsG~G--G~--------~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~gg   68 (331)
T 3ubt_Y            1 MNLISLFSGAG--GL--------DLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGG   68 (331)
T ss_dssp             CEEEEESCTTC--HH--------HHHHHHTTCEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECC
T ss_pred             CeEEEeCcCcc--HH--------HHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEec
Confidence            37999999999  45        55566677777889999           3456888999988654  679999883

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.68  E-value=0.051  Score=48.09  Aligned_cols=56  Identities=13%  Similarity=0.158  Sum_probs=36.3

Q ss_pred             eEEEEccccccC--CC-CceeEEEecccccccCChhhH-HHHHHHHhccccCCeEEEeecc
Q psy9773          93 LEVIQNKIENVE--LP-EKVDIIVSEWMGFYLLHESMI-DSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        93 i~~~~~d~~~~~--~~-~~fDlIv~~~~~~~l~~~~~~-~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++++.+|+...-  ++ ..||+|+....+..- +...+ ..+|..+.++++|||+|.-.+.
T Consensus       168 L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~k-NPeLWs~e~f~~l~~~~~pgg~laTYta  227 (308)
T 3vyw_A          168 LKVLLGDARKRIKEVENFKADAVFHDAFSPYK-NPELWTLDFLSLIKERIDEKGYWVSYSS  227 (308)
T ss_dssp             EEEEESCHHHHGGGCCSCCEEEEEECCSCTTT-SGGGGSHHHHHHHHTTEEEEEEEEESCC
T ss_pred             EEEEechHHHHHhhhcccceeEEEeCCCCccc-CcccCCHHHHHHHHHHhCCCcEEEEEeC
Confidence            356778876542  23 479999885532111 11111 4789999999999999985543

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=94.68  E-value=0.083  Score=46.96  Aligned_cols=56  Identities=16%  Similarity=0.160  Sum_probs=41.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCC--CceeEEE
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELP--EKVDIIV  113 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~--~~fDlIv  113 (252)
                      ..+.++|||.||.|  .+        ++.+...|+..+.++|+            ...  ..+|+..+...  ..+|+|+
T Consensus         9 ~~~~~~~dLFaG~G--g~--------~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~--~~~Di~~~~~~~~~~~D~l~   76 (327)
T 2c7p_A            9 LTGLRFIDLFAGLG--GF--------RLALESCGAECVYSNEWDKYAQEVYEMNFGEK--PEGDITQVNEKTIPDHDILC   76 (327)
T ss_dssp             TTTCEEEEETCTTT--HH--------HHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--CBSCGGGSCGGGSCCCSEEE
T ss_pred             cCCCcEEEECCCcC--HH--------HHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC--CcCCHHHcCHhhCCCCCEEE
Confidence            34579999999999  55        55666778888999999            222  26888887543  4699999


Q ss_pred             ec
Q psy9773         114 SE  115 (252)
Q Consensus       114 ~~  115 (252)
                      ..
T Consensus        77 ~g   78 (327)
T 2c7p_A           77 AG   78 (327)
T ss_dssp             EE
T ss_pred             EC
Confidence            84

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=94.48  E-value=0.084  Score=47.10  Aligned_cols=87  Identities=14%  Similarity=0.153  Sum_probs=61.3

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-------------C----------------------
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-------------L----------------------   91 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-------------~----------------------   91 (252)
                      .+...|+.||||..  +.        ...+... +...++-+|.             .                      
T Consensus        96 ~~~~qVV~LGaGlD--Tr--------~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~  165 (334)
T 1rjd_A           96 NEKVQVVNLGCGSD--LR--------MLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLID  165 (334)
T ss_dssp             CSSEEEEEETCTTC--CT--------HHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred             CCCcEEEEeCCCCc--cH--------HHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccC
Confidence            34578999999999  66        5555543 2235677776             1                      


Q ss_pred             --ceEEEEccccccCC----------CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEe
Q psy9773          92 --ILEVIQNKIENVEL----------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYP  146 (252)
Q Consensus        92 --~i~~~~~d~~~~~~----------~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~  146 (252)
                        +..++.+|+.+...          +....++++..++.++... ....+|..+...+ |+|.+++
T Consensus       166 ~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~-~~~~ll~~ia~~~-~~~~~v~  230 (334)
T 1rjd_A          166 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNN-ESQLLINTIMSKF-SHGLWIS  230 (334)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH-HHHHHHHHHHHHC-SSEEEEE
T ss_pred             CCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHH-HHHHHHHHHHhhC-CCcEEEE
Confidence              46788999987421          2568899998888887444 6888888887766 7777653

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=94.25  E-value=0.065  Score=47.85  Aligned_cols=57  Identities=19%  Similarity=0.166  Sum_probs=43.0

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC------------CceEEEEccccccCCC----CceeEE
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY------------LILEVIQNKIENVELP----EKVDII  112 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~------------~~i~~~~~d~~~~~~~----~~fDlI  112 (252)
                      .+|||+.||.|  .+        ++.+...|  +..|+++|+            ....++.+|+..+...    ..+|+|
T Consensus         3 ~~v~dLFaG~G--g~--------~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l   72 (343)
T 1g55_A            3 LRVLELYSGVG--GM--------HHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMI   72 (343)
T ss_dssp             EEEEEETCTTC--HH--------HHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEE
T ss_pred             CeEEEeCcCcc--HH--------HHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEE
Confidence            58999999999  55        55666667  457999999            4456788999887532    269999


Q ss_pred             Eeccc
Q psy9773         113 VSEWM  117 (252)
Q Consensus       113 v~~~~  117 (252)
                      +..+-
T Consensus        73 ~~gpP   77 (343)
T 1g55_A           73 LMSPP   77 (343)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            98543

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=93.94  E-value=0.18  Score=43.44  Aligned_cols=54  Identities=7%  Similarity=0.014  Sum_probs=36.8

Q ss_pred             ceEEEEccccccC------CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          92 ILEVIQNKIENVE------LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        92 ~i~~~~~d~~~~~------~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++.++.+++.+.-      .+ .++|+|+...-     .-......+..+...|+|||++++....
T Consensus       159 ~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D-----~Y~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          159 RSVLVEGDVRETVPRYLAENPQTVIALAYFDLD-----LYEPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             SEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC-----CHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             cEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc-----ccchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            3566777765441      12 46899987442     1124556788889999999999999853

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=93.93  E-value=0.2  Score=44.14  Aligned_cols=88  Identities=7%  Similarity=-0.057  Sum_probs=64.2

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccCC------
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVEL------  105 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~~------  105 (252)
                      ..|++||||-=  +.        ...+.......++-+|.                   .+..++.+|+.+ ..      
T Consensus       104 ~QvV~LGaGlD--Tr--------a~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~  172 (310)
T 2uyo_A          104 RQFVILASGLD--SR--------AYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRS  172 (310)
T ss_dssp             CEEEEETCTTC--CH--------HHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHH
T ss_pred             CeEEEeCCCCC--ch--------hhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHh
Confidence            57999999987  54        33333211246888887                   467789999986 21      


Q ss_pred             ---C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 ---P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 ---~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                         . ...-++++..+++++... ....+|..+...+.||+.|++....
T Consensus       173 ~g~d~~~Pt~~i~Egvl~Yl~~~-~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          173 AGFDPSARTAWLAEGLLMYLPAT-AQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             TTCCTTSCEEEEECSCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             ccCCCCCCEEEEEechHhhCCHH-HHHHHHHHHHHhCCCCeEEEEEecC
Confidence               1 346778888888887554 7889999999988999999998754

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=93.75  E-value=0.057  Score=46.10  Aligned_cols=33  Identities=18%  Similarity=0.134  Sum_probs=27.7

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      ..+|..|||.+||+|  +.        +..+.+.| .+++|+|+
T Consensus       210 ~~~~~~vlD~f~GsG--tt--------~~~a~~~g-r~~ig~e~  242 (260)
T 1g60_A          210 SNPNDLVLDCFMGSG--TT--------AIVAKKLG-RNFIGCDM  242 (260)
T ss_dssp             CCTTCEEEESSCTTC--HH--------HHHHHHTT-CEEEEEES
T ss_pred             CCCCCEEEECCCCCC--HH--------HHHHHHcC-CeEEEEeC
Confidence            478899999999999  76        66777776 67999998

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=93.71  E-value=0.064  Score=48.34  Aligned_cols=68  Identities=13%  Similarity=0.028  Sum_probs=45.0

Q ss_pred             HhccHHHHHHHHHHHHhCCC--CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-------------
Q psy9773          27 MLDDTVRNEAYRAAICDNPN--IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-------------   90 (252)
Q Consensus        27 ~l~~~~~~~~~~~~l~~~~~--~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-------------   90 (252)
                      .+.+..-...+.+++.....  ..++..|||||.|.|  .+        +..++.. .+++|+++++             
T Consensus        34 FL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G--~L--------T~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~  103 (353)
T 1i4w_A           34 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVG--IQ--------SAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE  103 (353)
T ss_dssp             CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTC--HH--------HHHHHHHHCCSEEEEECCCHHHHHHHHHHTT
T ss_pred             ccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCC--HH--------HHHHHhhCCCCEEEEEecCHHHHHHHHHhcc
Confidence            44455444444444421110  114689999999999  66        6666654 3468999999             


Q ss_pred             -CceEEEEccccccC
Q psy9773          91 -LILEVIQNKIENVE  104 (252)
Q Consensus        91 -~~i~~~~~d~~~~~  104 (252)
                       .++.++.+|+..+.
T Consensus       104 ~~~l~ii~~D~l~~~  118 (353)
T 1i4w_A          104 GSPLQILKRDPYDWS  118 (353)
T ss_dssp             TSSCEEECSCTTCHH
T ss_pred             CCCEEEEECCccchh
Confidence             57899999996653

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=93.48  E-value=0.34  Score=42.37  Aligned_cols=60  Identities=10%  Similarity=-0.035  Sum_probs=43.8

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCc--EEEeeC------------CceEEEEccccccCCC-----
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLD--HYAPQY------------LILEVIQNKIENVELP-----  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~--v~gvD~------------~~i~~~~~d~~~~~~~-----  106 (252)
                      ....+.+++||.||.|  -+        ++.+.+.|...  |.++|+            ....++.+|+.++...     
T Consensus        12 ~~~~~~~vidLFaG~G--G~--------~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~i~~~   81 (295)
T 2qrv_A           12 EKRKPIRVLSLFDGIA--TG--------LLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEW   81 (295)
T ss_dssp             CCCCCEEEEEETCTTT--HH--------HHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHHHHHT
T ss_pred             ccCCCCEEEEeCcCcc--HH--------HHHHHHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHHhccc
Confidence            3455679999999999  54        45555667654  689998            3456888999988532     


Q ss_pred             CceeEEEec
Q psy9773         107 EKVDIIVSE  115 (252)
Q Consensus       107 ~~fDlIv~~  115 (252)
                      +.+|+|+..
T Consensus        82 ~~~Dll~gg   90 (295)
T 2qrv_A           82 GPFDLVIGG   90 (295)
T ss_dssp             CCCSEEEEC
T ss_pred             CCcCEEEec
Confidence            469999983

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=93.43  E-value=0.17  Score=40.41  Aligned_cols=93  Identities=15%  Similarity=0.159  Sum_probs=57.2

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCC------CCceeE
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVEL------PEKVDI  111 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~------~~~fDl  111 (252)
                      ....-|||+|-|+|++.-        .+. .....+.++.+|-          ..-.++.+|+.+.-.      ..+.-+
T Consensus        39 ~~~GpVlElGLGNGRTyd--------HLR-e~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~L  109 (174)
T 3iht_A           39 GLSGPVYELGLGNGRTYH--------HLR-QHVQGREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERFGATASL  109 (174)
T ss_dssp             TCCSCEEEECCTTCHHHH--------HHH-HHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHHCSCEEE
T ss_pred             CCCCceEEecCCCChhHH--------HHH-HhCCCCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhcCCceEE
Confidence            334579999999996554        222 2233478999998          445689999977621      256777


Q ss_pred             EEecccccccCChhhHHHHH-HHHhccccCCeEEEeecc
Q psy9773         112 IVSEWMGFYLLHESMIDSVI-FARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l-~~l~~~LkpgG~lv~~~~  149 (252)
                      +.+..-.+.-.........+ .-+..+|.|||+++-..+
T Consensus       110 aHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~p  148 (174)
T 3iht_A          110 VHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDR  148 (174)
T ss_dssp             EEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence            77754322211111122222 235789999999987654

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=93.06  E-value=0.19  Score=45.11  Aligned_cols=62  Identities=16%  Similarity=0.085  Sum_probs=41.1

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-------------CceEEEEccccccCC-----
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-------------LILEVIQNKIENVEL-----  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-------------~~i~~~~~d~~~~~~-----  105 (252)
                      ....+|..++|..||.|+.+.         .++...++ .+|+|+|.             .++.+++++..++..     
T Consensus        53 L~i~pggiyVD~TlG~GGHS~---------~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~  123 (347)
T 3tka_A           53 LNIRPDGIYIDGTFGRGGHSR---------LILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAER  123 (347)
T ss_dssp             TCCCTTCEEEESCCTTSHHHH---------HHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHT
T ss_pred             hCCCCCCEEEEeCcCCCHHHH---------HHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence            456789999999999996655         22333333 58999999             356677776665521     


Q ss_pred             --CCceeEEEec
Q psy9773         106 --PEKVDIIVSE  115 (252)
Q Consensus       106 --~~~fDlIv~~  115 (252)
                        .+++|.|+.+
T Consensus       124 g~~~~vDgILfD  135 (347)
T 3tka_A          124 DLIGKIDGILLD  135 (347)
T ss_dssp             TCTTCEEEEEEE
T ss_pred             CCCCcccEEEEC
Confidence              1247777663

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=92.95  E-value=0.061  Score=46.83  Aligned_cols=60  Identities=17%  Similarity=0.104  Sum_probs=41.8

Q ss_pred             CceEEEEccccccC--CC-CceeEEEecccccccCC-----------------hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          91 LILEVIQNKIENVE--LP-EKVDIIVSEWMGFYLLH-----------------ESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        91 ~~i~~~~~d~~~~~--~~-~~fDlIv~~~~~~~l~~-----------------~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .++.++++|+.+..  ++ ++||+|++++-......                 ...+..++..+.++|+|||.|++....
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d   99 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD   99 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence            56789999998742  33 78999999764321100                 012456788899999999999887654

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=92.47  E-value=0.35  Score=43.00  Aligned_cols=90  Identities=13%  Similarity=0.078  Sum_probs=53.4

Q ss_pred             HHhCCCCCCCCEEEEEcCCc-CchhhhhccCccchHHHhh-cCCCcEEEeeC-----------CceEEEEcccccc----
Q psy9773          41 ICDNPNIFAGKTVLDVGTGT-GKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------LILEVIQNKIENV----  103 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGt-G~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------~~i~~~~~d~~~~----  103 (252)
                      +.+.....++.+||-+|||. |  .+        ...+++ .|+.+|++++.           ..-.++..+-.++    
T Consensus       182 l~~~~~~~~g~~VlV~GaG~vG--~~--------a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~  251 (371)
T 1f8f_A          182 CINALKVTPASSFVTWGAGAVG--LS--------ALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAI  251 (371)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHH--HH--------HHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHH--HH--------HHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHH
Confidence            33445678899999999875 4  33        344444 67667999986           1112222111111    


Q ss_pred             -C-CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         104 -E-LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       104 -~-~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                       . ..+.+|+|+-...     .    ...+..+.++|+|+|+++....
T Consensus       252 ~~~~~gg~D~vid~~g-----~----~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          252 KEITDGGVNFALESTG-----S----PEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             HHHTTSCEEEEEECSC-----C----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             HHhcCCCCcEEEECCC-----C----HHHHHHHHHHHhcCCEEEEeCC
Confidence             0 1136999976221     1    2346666789999999987643

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=91.38  E-value=0.42  Score=41.78  Aligned_cols=80  Identities=16%  Similarity=0.046  Sum_probs=50.9

Q ss_pred             CccchHHHhhcCCCcEEEeeC---------------CceEEE-EccccccCCCCceeEEEecccccccCCh--------h
Q psy9773          70 GVDHHSFCTKVHPLDHYAPQY---------------LILEVI-QNKIENVELPEKVDIIVSEWMGFYLLHE--------S  125 (252)
Q Consensus        70 ~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~-~~d~~~~~~~~~fDlIv~~~~~~~l~~~--------~  125 (252)
                      +-+.+.++.+.....|..|+.               ...+++ ++|+......+.+|+|++++....-.|.        .
T Consensus       152 ~~~~~~~~~k~~g~~vl~v~~~~~~p~k~v~wi~Pi~GAt~~~~lDfg~p~~~~k~DvV~SDMApn~sGh~yqQC~DHar  231 (320)
T 2hwk_A          152 QSDFSSFVSKLKGRTVLVVGEKLSVPGKMVDWLSDRPEATFRARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAI  231 (320)
T ss_dssp             CCCCHHHHHTSSCSEEEEEESCCCCTTSEEEEEESSTTCSEECCGGGCSCTTSCCEEEEEEECCCCCCSCHHHHHHHHHH
T ss_pred             CCCHHHHHhhCCCcEEEEEecccccCCceeEeeccCCCceeecccccCCccccCcCCEEEEcCCCCCCCccccccchHHH
Confidence            445566766654466777763               333444 5565554444779999997665443333        2


Q ss_pred             hHHHHHHHHhccccCCeEEEeecc
Q psy9773         126 MIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       126 ~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .+..++..+.++|+|||.|++-..
T Consensus       232 ii~Lal~fA~~vLkPGGtfV~Kvy  255 (320)
T 2hwk_A          232 KLSMLTKKACLHLNPGGTCVSIGY  255 (320)
T ss_dssp             HHHHTHHHHGGGEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEe
Confidence            334466677899999999998653

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=89.84  E-value=0.74  Score=41.35  Aligned_cols=92  Identities=13%  Similarity=-0.002  Sum_probs=53.7

Q ss_pred             CCCCCCCEEEEEcCCc-CchhhhhccCccchHHHhh-cCCCcEEEeeC----------CceEEEEccccccCC-------
Q psy9773          45 PNIFAGKTVLDVGTGT-GKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------LILEVIQNKIENVEL-------  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGt-G~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------~~i~~~~~d~~~~~~-------  105 (252)
                      ....+|.+||-+|||. |  .+        +..+++ .|+.+|++++.          ....++  |......       
T Consensus       181 ~~~~~g~~VlV~GaG~vG--~~--------aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~~~~  248 (398)
T 2dph_A          181 AGVKPGSHVYIAGAGPVG--RC--------AAAGARLLGAACVIVGDQNPERLKLLSDAGFETI--DLRNSAPLRDQIDQ  248 (398)
T ss_dssp             TTCCTTCEEEEECCSHHH--HH--------HHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEE--ETTSSSCHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHH--HH--------HHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEE--cCCCcchHHHHHHH
Confidence            5678899999999865 5  44        444444 67657999987          223333  2222111       


Q ss_pred             --C-CceeEEEecccccccCC-----hhhHHHHHHHHhccccCCeEEEeec
Q psy9773         106 --P-EKVDIIVSEWMGFYLLH-----ESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       106 --~-~~fDlIv~~~~~~~l~~-----~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                        . ..+|+|+-........+     .......+..+.++|+++|++++..
T Consensus       249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          249 ILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             HHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             HhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence              1 26999986332110000     0012235666778999999998654

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=89.80  E-value=0.86  Score=40.35  Aligned_cols=57  Identities=12%  Similarity=0.058  Sum_probs=40.0

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcE-EEeeC------------CceEEEEccccccCCC----Cce
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDH-YAPQY------------LILEVIQNKIENVELP----EKV  109 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v-~gvD~------------~~i~~~~~d~~~~~~~----~~f  109 (252)
                      ...+++|+.||.|  -+        +..+...|.  ..+ .++|+            +. .++.+|+.++...    ..+
T Consensus         9 ~~~~vidLFaG~G--G~--------~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-~~~~~DI~~~~~~~i~~~~~   77 (327)
T 3qv2_A            9 KQVNVIEFFSGIG--GL--------RSSYERSSININATFIPFDINEIANKIYSKNFKE-EVQVKNLDSISIKQIESLNC   77 (327)
T ss_dssp             CCEEEEEETCTTT--HH--------HHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-CCBCCCTTTCCHHHHHHTCC
T ss_pred             CCCEEEEECCChh--HH--------HHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-CcccCChhhcCHHHhccCCC
Confidence            3468999999999  44        445555563  557 79999            22 2677898888543    369


Q ss_pred             eEEEecc
Q psy9773         110 DIIVSEW  116 (252)
Q Consensus       110 DlIv~~~  116 (252)
                      |+++..+
T Consensus        78 Dil~ggp   84 (327)
T 3qv2_A           78 NTWFMSP   84 (327)
T ss_dssp             CEEEECC
T ss_pred             CEEEecC
Confidence            9999743

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=89.74  E-value=0.29  Score=43.53  Aligned_cols=54  Identities=17%  Similarity=0.178  Sum_probs=39.7

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC------------CceEEEEccccccCCC----CceeEE
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY------------LILEVIQNKIENVELP----EKVDII  112 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~------------~~i~~~~~d~~~~~~~----~~fDlI  112 (252)
                      .+++|+.||.|+  +        +..+...|.  ..+.++|+            +...++.+|+.++...    ..+|+|
T Consensus         4 ~~~idLFaG~GG--~--------~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l   73 (333)
T 4h0n_A            4 HKILELYSGIGG--M--------HCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTI   73 (333)
T ss_dssp             EEEEEETCTTTH--H--------HHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEE
T ss_pred             CEEEEECcCccH--H--------HHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEE
Confidence            479999999994  4        444555564  56889999            3456788999888543    369999


Q ss_pred             Ee
Q psy9773         113 VS  114 (252)
Q Consensus       113 v~  114 (252)
                      +.
T Consensus        74 ~g   75 (333)
T 4h0n_A           74 LM   75 (333)
T ss_dssp             EE
T ss_pred             Ee
Confidence            97

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=89.43  E-value=0.17  Score=44.67  Aligned_cols=60  Identities=15%  Similarity=0.002  Sum_probs=42.9

Q ss_pred             CceEEEEcccccc-C-CC-CceeEEEecccccccC-----------ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          91 LILEVIQNKIENV-E-LP-EKVDIIVSEWMGFYLL-----------HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        91 ~~i~~~~~d~~~~-~-~~-~~fDlIv~~~~~~~l~-----------~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ....++++|.... . ++ ++||+|++++-.....           +...+..+|..+.++|+|||.+++....
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d   86 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG   86 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence            5678899998763 2 33 7899999976422110           0124678888999999999999997654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=87.78  E-value=0.49  Score=45.86  Aligned_cols=56  Identities=13%  Similarity=0.199  Sum_probs=34.8

Q ss_pred             ceEEEEccccccCC------CCceeEEEecccccccCChhh-HHHHHHHHhccccCCeEEEeec
Q psy9773          92 ILEVIQNKIENVEL------PEKVDIIVSEWMGFYLLHESM-IDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        92 ~i~~~~~d~~~~~~------~~~fDlIv~~~~~~~l~~~~~-~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .++++.+|+.+.-.      ...+|.++........ +... -..++..+.++++|||.+....
T Consensus       149 ~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~-np~~w~~~~~~~l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          149 TLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAK-NPDMWNEQLFNAMARMTRPGGTFSTFT  211 (689)
T ss_dssp             EEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEESC
T ss_pred             EEEEEccCHHHHHhhcccccCCceeEEEECCCCCCC-ChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence            35567777754421      2579999885532211 1111 2467888899999999987543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=87.72  E-value=1.3  Score=39.61  Aligned_cols=94  Identities=14%  Similarity=0.080  Sum_probs=54.2

Q ss_pred             CCCCCCCEEEEEcCCc-CchhhhhccCccchHHHhh-cCCCcEEEeeC----------CceEEEEccccc-cC------C
Q psy9773          45 PNIFAGKTVLDVGTGT-GKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------LILEVIQNKIEN-VE------L  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGt-G~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------~~i~~~~~d~~~-~~------~  105 (252)
                      ....+|.+||-+|||. |  .+        +..+++ .|+.+|+++|.          ....++...-.+ +.      .
T Consensus       181 ~~~~~g~~VlV~GaG~vG--~~--------aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t  250 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVG--LA--------AAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALL  250 (398)
T ss_dssp             TTCCTTCEEEEECCSHHH--HH--------HHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCcHHH--HH--------HHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHh
Confidence            5678899999999864 4  44        444444 67667999987          223333211111 10      0


Q ss_pred             C-CceeEEEeccccccc------CChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         106 P-EKVDIIVSEWMGFYL------LHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       106 ~-~~fDlIv~~~~~~~l------~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      . ..+|+|+-.......      .+..+....+..+.++|++||++++..
T Consensus       251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            1 369999873321100      011123345677778999999998654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=86.26  E-value=3.5  Score=36.02  Aligned_cols=82  Identities=15%  Similarity=0.084  Sum_probs=50.2

Q ss_pred             CCCCCCCEEEEEcCCc-CchhhhhccCccchHHHhh-cCCCcEEEeeC----------Cce-EEEEccccccCCCCceeE
Q psy9773          45 PNIFAGKTVLDVGTGT-GKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------LIL-EVIQNKIENVELPEKVDI  111 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGt-G~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------~~i-~~~~~d~~~~~~~~~fDl  111 (252)
                      ....+|.+||-+|+|. |  .+        +..+++ .|+ +|++++.          ... .++ .+...+  ...+|+
T Consensus       172 ~~~~~g~~VlV~GaG~vG--~~--------a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~~--~~~~D~  237 (348)
T 3two_A          172 SKVTKGTKVGVAGFGGLG--SM--------AVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY-TDPKQC--KEELDF  237 (348)
T ss_dssp             TTCCTTCEEEEESCSHHH--HH--------HHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE-SSGGGC--CSCEEE
T ss_pred             cCCCCCCEEEEECCcHHH--HH--------HHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec-CCHHHH--hcCCCE
Confidence            4678899999999864 4  33        344444 665 7999887          111 222 332222  237999


Q ss_pred             EEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |+-...     ...    .+..+.++|+|+|+++....
T Consensus       238 vid~~g-----~~~----~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          238 IISTIP-----THY----DLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             EEECCC-----SCC----CHHHHHTTEEEEEEEEECCC
T ss_pred             EEECCC-----cHH----HHHHHHHHHhcCCEEEEECC
Confidence            976221     111    24556689999999997653

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=85.47  E-value=1.2  Score=41.58  Aligned_cols=56  Identities=11%  Similarity=0.211  Sum_probs=40.0

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCC---------
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVEL---------  105 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~---------  105 (252)
                      ..+++||.||.|+  +        +..+...|...|.++|+               +...++.+|+.++..         
T Consensus        88 ~~~viDLFaG~GG--l--------slG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~  157 (482)
T 3me5_A           88 AFRFIDLFAGIGG--I--------RRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDE  157 (482)
T ss_dssp             SEEEEEESCTTSH--H--------HHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHH
T ss_pred             cceEEEecCCccH--H--------HHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchh
Confidence            3589999999994  4        44555567667889998               134577889887642         


Q ss_pred             ---------CCceeEEEec
Q psy9773         106 ---------PEKVDIIVSE  115 (252)
Q Consensus       106 ---------~~~fDlIv~~  115 (252)
                               ...+|+|+..
T Consensus       158 ~~~~~i~~~~~~~Dvl~gG  176 (482)
T 3me5_A          158 AAAEHIRQHIPEHDVLLAG  176 (482)
T ss_dssp             HHHHHHHHHSCCCSEEEEE
T ss_pred             hHHhhhhhcCCCCCEEEec
Confidence                     1468999873

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=85.44  E-value=0.99  Score=43.49  Aligned_cols=54  Identities=15%  Similarity=0.242  Sum_probs=33.4

Q ss_pred             EEEEccccccCC------CCceeEEEecccccccCChhh-HHHHHHHHhccccCCeEEEeec
Q psy9773          94 EVIQNKIENVEL------PEKVDIIVSEWMGFYLLHESM-IDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        94 ~~~~~d~~~~~~------~~~fDlIv~~~~~~~l~~~~~-~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ++..+|+.+.-.      ...||+|+........ +... -..+|..+.++++|||.+....
T Consensus       159 ~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~-np~~w~~~~~~~l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          159 DLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK-NPDMWTQNLFNAMARLARPGGTLATFT  219 (676)
T ss_dssp             EEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGG-CGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred             EEecCCHHHHHHhcccccCCcccEEEECCCCCcC-ChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence            355666654311      2579999886543221 1111 2367888999999999997554

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=84.68  E-value=0.69  Score=40.77  Aligned_cols=59  Identities=14%  Similarity=0.163  Sum_probs=40.2

Q ss_pred             ceEEE-Ecccccc--CCC-CceeEEEeccccccc--------CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          92 ILEVI-QNKIENV--ELP-EKVDIIVSEWMGFYL--------LHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        92 ~i~~~-~~d~~~~--~~~-~~fDlIv~~~~~~~l--------~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ...++ ++|....  .++ ++||+|++++-....        .+...+...|..+.++|+|||.+++....
T Consensus        38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~  108 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL  108 (319)
T ss_dssp             EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCc
Confidence            35667 8888654  233 689999997642211        01124567778889999999999987654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=83.88  E-value=0.89  Score=39.95  Aligned_cols=33  Identities=9%  Similarity=0.019  Sum_probs=27.0

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      ..+|..|||..||+|  +.        +..+...| .+.+|+|+
T Consensus       250 ~~~~~~VlDpF~GsG--tt--------~~aa~~~g-r~~ig~e~  282 (323)
T 1boo_A          250 TEPDDLVVDIFGGSN--TT--------GLVAERES-RKWISFEM  282 (323)
T ss_dssp             CCTTCEEEETTCTTC--HH--------HHHHHHTT-CEEEEEES
T ss_pred             CCCCCEEEECCCCCC--HH--------HHHHHHcC-CCEEEEeC
Confidence            478899999999999  66        55666666 67999998

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=82.89  E-value=0.72  Score=39.09  Aligned_cols=56  Identities=13%  Similarity=0.041  Sum_probs=37.2

Q ss_pred             eEEEEcccccc--CCC-CceeEEEecccccccCC-------h----hhHHHHHHHHhccccCCeEEEeec
Q psy9773          93 LEVIQNKIENV--ELP-EKVDIIVSEWMGFYLLH-------E----SMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        93 i~~~~~d~~~~--~~~-~~fDlIv~~~~~~~l~~-------~----~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ..++++|....  .++ ++||+|++++-......       .    ..+..+|..+.++|+|||.+++..
T Consensus         5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (260)
T ss_dssp             SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            35677887544  123 68999999764221100       0    135677788899999999999874

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=82.25  E-value=2.1  Score=37.25  Aligned_cols=88  Identities=15%  Similarity=0.003  Sum_probs=51.7

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEcccccc-------CCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENV-------ELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~-------~~~  106 (252)
                      ....+|.+||=+|+|.++...        ...++..+..+|+++|.           ..-.++...-.++       ...
T Consensus       159 ~~~~~g~~VlV~GaG~~g~~a--------~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g  230 (348)
T 4eez_A          159 SGVKPGDWQVIFGAGGLGNLA--------IQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGG  230 (348)
T ss_dssp             HTCCTTCEEEEECCSHHHHHH--------HHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTS
T ss_pred             cCCCCCCEEEEEcCCCccHHH--------HHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCC
Confidence            456889999999998764444        44455565678999997           1111221111111       111


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ..+|+++....     .    ...+....++|+++|++++...
T Consensus       231 ~g~d~~~~~~~-----~----~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          231 LGVQSAIVCAV-----A----RIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             SCEEEEEECCS-----C----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCceEEEEecc-----C----cchhheeheeecCCceEEEEec
Confidence            34666654221     1    2345566688999999987653

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=80.82  E-value=4.3  Score=35.16  Aligned_cols=88  Identities=9%  Similarity=-0.003  Sum_probs=52.2

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEcccccc-------CCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENV-------ELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~-------~~~  106 (252)
                      ....++.+||=.|+|..+...        ..++...|+..+++++.           ....++...-.+.       ...
T Consensus       156 ~~~~~g~~VlV~GaG~vG~~a--------iq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~  227 (346)
T 4a2c_A          156 AQGCENKNVIIIGAGTIGLLA--------IQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLREL  227 (346)
T ss_dssp             TTCCTTSEEEEECCSHHHHHH--------HHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGG
T ss_pred             hccCCCCEEEEECCCCcchHH--------HHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhccc
Confidence            567889999999997654443        44455577777788887           1122222111111       011


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ..+|+|+....         ....+..+.++|++||++++...
T Consensus       228 ~g~d~v~d~~G---------~~~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          228 RFNQLILETAG---------VPQTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             CSSEEEEECSC---------SHHHHHHHHHHCCTTCEEEECCC
T ss_pred             CCccccccccc---------ccchhhhhhheecCCeEEEEEec
Confidence            45788865221         12345566688999999987653

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=80.30  E-value=1.3  Score=38.87  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=27.6

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLI   92 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~   92 (252)
                      ..+|..|||..||+|  +.        +..+...| .+.+|+|+..
T Consensus       240 ~~~~~~vlDpF~GsG--tt--------~~aa~~~~-r~~ig~e~~~  274 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSG--VT--------ARVAIQEG-RNSICTDAAP  274 (319)
T ss_dssp             SCTTCEEEETTCTTC--HH--------HHHHHHHT-CEEEEEESST
T ss_pred             CCCCCEEEecCCCCC--HH--------HHHHHHcC-CcEEEEECCc
Confidence            478899999999999  65        55666666 6788998843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	4e-28
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	3e-26
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	3e-26
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	2e-05
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	2e-04
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	0.001
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	0.003

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  107 bits (267), Expect = 4e-28
 Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 17  SYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILL------QGH 69
           SY    +H+ ML D VR   YR ++  N ++F  K VLDVG+GTG   +        +  
Sbjct: 1   SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVI 60

Query: 70  GVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVE-LPEKVDIIVSEWMGFYLLHESMID 128
           G++  S       +        ++ +I+ K+E VE   EKVDII+SEWMG+ L +ESM++
Sbjct: 61  GIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLN 120

Query: 129 SVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK----FWENIAG 170
           +V+ ARDK+L P+G+++P +  L+       +       +WEN+ G
Sbjct: 121 TVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYG 166

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (254), Expect = 3e-26
 Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 12/171 (7%)

Query: 12  EEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQGHG 70
           + YF+SY    +H+ ML DTVR  +YR AI  N ++F  K VLDVG GTG  S+    HG
Sbjct: 1   DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60

Query: 71  ------VDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPE-KVDIIVSEWMGFYLLH 123
                 VD  S       L         + +++ K+E+V LP  KVDII+SEWMG++LL+
Sbjct: 61  AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLY 120

Query: 124 ESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK----FWENIAG 170
           ESM+D+V++ARD +L   G+++P KC +H A     +       +W+++ G
Sbjct: 121 ESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYG 171

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 3e-26
 Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 12/181 (6%)

Query: 15  FESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQGHG--- 70
           F SY    +H+ ML D +R E+YR  I  NP+IF  K VLDVG GTG  S+     G   
Sbjct: 1   FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 60

Query: 71  ---VDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEK-VDIIVSEWMGFYLLHESM 126
              VD      +   +         + +I+ KIE V LP + VD+I+SEWMG++LL ESM
Sbjct: 61  VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESM 120

Query: 127 IDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI----FKFWENIAGEEEKKEEDEIEE 182
           +DSV++A++K+L   G +YP  C +                FW+++ G +    +  +  
Sbjct: 121 LDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIP 180

Query: 183 E 183
           E
Sbjct: 181 E 181

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 32/222 (14%), Positives = 60/222 (27%), Gaps = 10/222 (4%)

Query: 13  EYFESYTDL--EVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHG 70
           E +    +    +++  ++       +   I         + VLD+  GTG   L     
Sbjct: 3   ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER 62

Query: 71  VD-----HHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHES 125
                                  + L +E +Q  +  +    + D +   +       E 
Sbjct: 63  GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEE 122

Query: 126 MIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEEN 185
            +  +     + LKP GV               P +   W    GEE+    D  E E  
Sbjct: 123 DLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVV---WNEQKGEEKLVIMDWREVEPA 179

Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
            ++   K+         E +    D+        E     E 
Sbjct: 180 VQKLRFKRLVQILRPNGEVKAFLVDDELNIYTPREVRLLAEK 221

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 21/230 (9%)

Query: 3   MEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK 62
           + V  +   ++Y +          + D   R   Y+A +           VLDV  GTG 
Sbjct: 10  LGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGV 69

Query: 63  -SILLQGHGVD---------HHSFCTKVHPLDHYAPQYLILEVIQNKIENVE----LPEK 108
            SI+L   G              +  K        P +    + +     ++      + 
Sbjct: 70  DSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDG 129

Query: 109 VDIIVSEWMGFYLLHESMIDSVIFAR-----DKFLKPEGVMYPYKCILHSAPSYSPEIFK 163
            D ++     F  L +S  D              ++P G++       +     S     
Sbjct: 130 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI--DHRNYDYILSTGCAP 187

Query: 164 FWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
             +NI  + +  ++          +  +       +             +
Sbjct: 188 PGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSK 237

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 12/139 (8%)

Query: 35  EAYRAAICDNPNIFAGKTVLDVGTGTGKSILL-------QGHGVD-HHSFCTKVHPLDHY 86
           E   A +     +  G  +LD+G+G+G+ +          G G+D    F  +       
Sbjct: 19  EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEE 78

Query: 87  APQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYP 146
                 +  I N        EK D+                        + LKP G+M  
Sbjct: 79  LGVSERVHFIHNDAAGYVANEKCDVAACVGA---TWIAGGFAGAEELLAQSLKPGGIMLI 135

Query: 147 YKCILHSAPSYSPEIFKFW 165
            +      P+ + EI +  
Sbjct: 136 GEPYWRQLPA-TEEIAQAC 153

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 30/205 (14%), Positives = 58/205 (28%), Gaps = 14/205 (6%)

Query: 22  EVHKLMLDDTVRNEAYRAAICD--NPNIFAGKTVLDVGTGTGKSILL------QGHGVDH 73
            ++  ++   V  + +   I +    N       LD+  GTG               VD 
Sbjct: 8   HIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDL 67

Query: 74  HSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFA 133
                        +         Q+        +   I        Y++    +     A
Sbjct: 68  SQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKA 127

Query: 134 RDKFLKPEGV----MYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEE 189
               LK  GV    +  Y  +     +         + +    E + ED++         
Sbjct: 128 VSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDD--DEVFYYWENQFEDDLVSMYISFFV 185

Query: 190 EVKQKKNKEEEEEEEEKKEEDEIEK 214
              +   + +EE EE   +E++IEK
Sbjct: 186 RDGEFYKRFDEEHEERAYKEEDIEK 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.91
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.9
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.89
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.7
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.69
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.68
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.67
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.67
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.65
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.64
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.64
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.59
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.57
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.57
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.56
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.55
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.54
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.51
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.5
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.46
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.46
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.45
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.44
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.43
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.42
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.4
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.39
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.39
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.36
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.35
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.33
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.33
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.33
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.28
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.27
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.27
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.26
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.25
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.25
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.23
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.22
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.19
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.15
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.15
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.14
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.11
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.1
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.09
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.09
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.04
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.03
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.01
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.99
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.97
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.97
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.94
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.94
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.93
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.91
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.9
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.9
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.87
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.81
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.77
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.76
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.73
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.68
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.65
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.61
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.5
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.5
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.5
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.49
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.44
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.43
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.33
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.29
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.25
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.2
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.19
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.18
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.14
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.13
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.12
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.08
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.06
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.05
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.01
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.96
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.93
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.93
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.68
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.49
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.39
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.39
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.28
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.23
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.2
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.13
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	97.13
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.11
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.89
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.47
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.78
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.71
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	94.68
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.37
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.28
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	94.28
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.86
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	93.53
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.32
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.01
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.76
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.45
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.28
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.9
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	91.39
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.31
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	90.71
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.86
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.62
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	89.37
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	89.02
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.88
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	88.73
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.46
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	87.22
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.06
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	86.53
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	86.52
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	86.15
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	85.89
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	85.2
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	85.14
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	84.39
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	84.32
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	83.0
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	81.91
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	80.99

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.9e-25  Score=198.14  Aligned_cols=164  Identities=40%  Similarity=0.706  Sum_probs=148.2

Q ss_pred             hhHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-
Q psy9773          12 EEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-   90 (252)
Q Consensus        12 ~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-   90 (252)
                      +.||++|+.+..|..|++|..|+..|.++|.++....+|++|||||||+|  .+        ++.+++.|+++|+|+|. 
T Consensus         1 d~yf~~y~~~~~h~~ml~D~~r~~~y~~aI~~~~~~~~~~~VLDlGcGtG--~l--------s~~aa~~Ga~~V~avd~s   70 (328)
T d1g6q1_           1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTG--IL--------SMFAAKHGAKHVIGVDMS   70 (328)
T ss_dssp             CCCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTS--HH--------HHHHHHTCCSEEEEEESS
T ss_pred             CCcchhhcCchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEeCCCCC--HH--------HHHHHHhCCCEEEEEeCC
Confidence            35999999999999999999999999999987666678999999999999  88        99999999989999999 


Q ss_pred             ----------------CceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773          91 ----------------LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus        91 ----------------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                                      .++.++++++.+++++ ++||+|++.++.+++.+...+..++..+.++|+|||++++...+.+.
T Consensus        71 ~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~  150 (328)
T d1g6q1_          71 SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHL  150 (328)
T ss_dssp             THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEE
T ss_pred             HHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceee
Confidence                            6799999999999887 78999999999999999889999999999999999999999999999


Q ss_pred             CCCCChhH----HHHhhhhhCCccccchhHHhhhhh
Q psy9773         154 APSYSPEI----FKFWENIAGEEEKKEEDEIEEEEN  185 (252)
Q Consensus       154 ~~~~~~~~----~~~w~~~~g~~~~~~~~~~~~~~~  185 (252)
                      .+.....+    ..+|...+||+++++......+|.
T Consensus       151 ~~v~~~~l~~~~~~~~~~~~G~d~~~~~~~~~~~~~  186 (328)
T d1g6q1_         151 AGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPI  186 (328)
T ss_dssp             EEECCHHHHHHHHHHTTCBTTBCCTTHHHHHTTSCE
T ss_pred             ecccCHHHHHHhccccccccccccchhhhhhccCcE
Confidence            88888765    457899999999999887765543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.3e-24  Score=187.13  Aligned_cols=160  Identities=41%  Similarity=0.727  Sum_probs=144.0

Q ss_pred             hhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----
Q psy9773          15 FESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----   90 (252)
Q Consensus        15 f~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----   90 (252)
                      |++|+.+..|..|++|..|+..|.++|.++....++++|||||||+|  .+        ++.+++.|+++|+|+|.    
T Consensus         1 ~~~y~~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G--~l--------sl~aa~~Ga~~V~aid~s~~~   70 (311)
T d2fyta1           1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTG--IL--------SMFAAKAGAKKVLGVDQSEIL   70 (311)
T ss_dssp             CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTS--HH--------HHHHHHTTCSEEEEEESSTHH
T ss_pred             CCCcccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEECCCCC--HH--------HHHHHHcCCCEEEEEeCHHHH
Confidence            67899999999999999999999999998878889999999999999  88        99999999989999999    


Q ss_pred             -------------CceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCC
Q psy9773          91 -------------LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPS  156 (252)
Q Consensus        91 -------------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~  156 (252)
                                   .++.++++|+.++..+ .+||+|++.++.+++.+...+..++..+.++|+|||++++...+.+..+.
T Consensus        71 ~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~~~~~~v  150 (311)
T d2fyta1          71 YQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAV  150 (311)
T ss_dssp             HHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccccceEEEEe
Confidence                         6799999999999877 89999999999888888888999999999999999999999999888888


Q ss_pred             CChhH----HHHhhhhhCCccccchhHHhhhh
Q psy9773         157 YSPEI----FKFWENIAGEEEKKEEDEIEEEE  184 (252)
Q Consensus       157 ~~~~~----~~~w~~~~g~~~~~~~~~~~~~~  184 (252)
                      ....+    ..+|.+.+|++++++......++
T Consensus       151 ~~~~~~~~~~~~~~~~~G~d~~~~~~~~~~~~  182 (311)
T d2fyta1         151 SDVNKHADRIAFWDDVYGFKMSCMKKAVIPEA  182 (311)
T ss_dssp             CCHHHHHHHTGGGGCBTTBCCGGGHHHHTTBC
T ss_pred             cCHHHHHhhhccccccccccccchhhcccccc
Confidence            77654    45789999999999887655543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=5.4e-24  Score=189.03  Aligned_cols=158  Identities=40%  Similarity=0.706  Sum_probs=141.8

Q ss_pred             hhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------
Q psy9773          17 SYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------   90 (252)
Q Consensus        17 ~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------   90 (252)
                      +|+.+..|..|++|..|+.+|.++|.++....+|++|||||||+|  .+        ++.+++.|+++|+|+|.      
T Consensus         1 ~y~~~~~h~~Ml~D~~R~~~y~~ai~~~~~~~~~~~VLDiGcG~G--~l--------s~~aa~~Ga~~V~avd~s~~~~~   70 (316)
T d1oria_           1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTG--IL--------CMFAAKAGARKVIGIECSSISDY   70 (316)
T ss_dssp             CHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTS--HH--------HHHHHHTTCSEEEEEECSTTHHH
T ss_pred             CCccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEEecCCc--HH--------HHHHHHhCCCEEEEEcCcHHHhh
Confidence            588888999999999999999999987666778999999999999  88        99999999889999998      


Q ss_pred             -----------CceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCCCC
Q psy9773          91 -----------LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYS  158 (252)
Q Consensus        91 -----------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~  158 (252)
                                 .++.++++|+.+++.+ ++||+|++.++.+++.+...+..++..+.++|+|||++++...+.+.+++..
T Consensus        71 a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~~  150 (316)
T d1oria_          71 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIED  150 (316)
T ss_dssp             HHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred             hhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEEecC
Confidence                       6799999999999887 8999999999988888888899999999999999999999999999888877


Q ss_pred             hhH----HHHhhhhhCCccccchhHHhhhh
Q psy9773         159 PEI----FKFWENIAGEEEKKEEDEIEEEE  184 (252)
Q Consensus       159 ~~~----~~~w~~~~g~~~~~~~~~~~~~~  184 (252)
                      ..+    ..+|.+++|++++++.......|
T Consensus       151 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~  180 (316)
T d1oria_         151 RQYKDYKIHWWENVYGFDMSCIKDVAIKEP  180 (316)
T ss_dssp             HHHHHHHTTTTTCBTTBCCHHHHHHHHTSC
T ss_pred             HHHHhhhcccccccccccchhhhhhhcccc
Confidence            655    45689999999999987765544

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.70  E-value=7.6e-17  Score=136.21  Aligned_cols=99  Identities=18%  Similarity=0.197  Sum_probs=81.5

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccC
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVE  104 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~  104 (252)
                      +.......++++|||+|||||  .+        +..+++.|+ +|+|+|+                .++.++++|+.+++
T Consensus        33 ~~~~~~~~~~~~iLDiGcGtG--~~--------~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~  101 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGTG--IP--------TLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA  101 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTTC--HH--------HHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC
T ss_pred             HHHHhcCCCCCEEEEeCCCCC--cc--------chhhcccce-EEEEEeeccccccccccccccccccchheehhhhhcc
Confidence            333345667789999999999  66        677888875 7999999                36899999999999


Q ss_pred             CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++++||+|+|.....+..+..++..+|..+.++|+|||+|++..+.
T Consensus       102 ~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         102 FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            8899999999654444456678899999999999999999997654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=3.3e-17  Score=137.96  Aligned_cols=95  Identities=18%  Similarity=0.244  Sum_probs=82.1

Q ss_pred             HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccc
Q psy9773          40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIEN  102 (252)
Q Consensus        40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~  102 (252)
                      ++.....+.+|.+|||||||+|  .+        +..+++.+ .+|+|+|+                 .++.++++|+.+
T Consensus         7 ~l~~~~~~~~~~rILDiGcGtG--~~--------~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~   75 (234)
T d1xxla_           7 LMIKTAECRAEHRVLDIGAGAG--HT--------ALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES   75 (234)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTS--HH--------HHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB
T ss_pred             HHHHHhCCCCCCEEEEeCCcCc--HH--------HHHHHHhC-CeEEEEeCChhhhhhhhhhhccccccccccccccccc
Confidence            3444467899999999999999  77        77788876 57999999                 579999999999


Q ss_pred             cCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         103 VELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       103 ~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ++++ ++||+|+|..+++++   +++..+|+++.++|+|||++++..
T Consensus        76 ~~~~~~~fD~v~~~~~l~~~---~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          76 LPFPDDSFDIITCRYAAHHF---SDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             CCSCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccceeeeeceeecc---cCHHHHHHHHHHeeCCCcEEEEEE
Confidence            9887 899999998887766   678899999999999999998864

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.68  E-value=4.2e-17  Score=136.17  Aligned_cols=92  Identities=18%  Similarity=0.192  Sum_probs=79.7

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC-
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP-  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~-  106 (252)
                      ..+.++.+|||||||+|  .+        +..+++.+ .+|+|+|+                 .++.++++|+.+++++ 
T Consensus        11 ~~l~~~~rVLDiGcG~G--~~--------~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~   79 (231)
T d1vl5a_          11 AALKGNEEVLDVATGGG--HV--------ANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD   79 (231)
T ss_dssp             HTCCSCCEEEEETCTTC--HH--------HHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred             cCCCCcCEEEEecccCc--HH--------HHHHHHhC-CEEEEEECCHHHHhhhhhcccccccccccccccccccccccc
Confidence            56889999999999999  66        67778887 57999999                 5789999999999877 


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++||+|+|..+++++   +++..+|.++.++|+|||+|++....
T Consensus        80 ~~fD~v~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~~~  120 (231)
T d1vl5a_          80 ERFHIVTCRIAAHHF---PNPASFVSEAYRVLKKGGQLLLVDNS  120 (231)
T ss_dssp             TCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccccccccccccccc---CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            899999998887777   77889999999999999999987543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.67  E-value=2.5e-16  Score=136.22  Aligned_cols=103  Identities=17%  Similarity=0.082  Sum_probs=85.2

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEE
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVI   96 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~   96 (252)
                      ..+...+.....+.++.+|||||||+|  .+        +..+++....+|+|+|+                  .+++++
T Consensus        53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G--~~--------~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~  122 (282)
T d2o57a1          53 EWLASELAMTGVLQRQAKGLDLGAGYG--GA--------ARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVK  122 (282)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTS--HH--------HHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCc--HH--------HhhhhccCCcEEEEEeccchhhhhhhccccccccccccccc
Confidence            344555666678899999999999999  55        66666642357999999                  479999


Q ss_pred             EccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          97 QNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        97 ~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++|+.+++++ ++||+|++..+++|+   +++..+|.++.++|+|||+|++....
T Consensus       123 ~~d~~~l~~~~~sfD~V~~~~~l~h~---~d~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         123 YGSFLEIPCEDNSYDFIWSQDAFLHS---PDKLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             ECCTTSCSSCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccccccccccccccchhhccchhhhc---cCHHHHHHHHHHhcCCCcEEEEEEee
Confidence            9999999887 899999998887777   67789999999999999999998654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=5.5e-17  Score=134.34  Aligned_cols=93  Identities=15%  Similarity=0.131  Sum_probs=78.8

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCC-Cc
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELP-EK  108 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~-~~  108 (252)
                      .+.++.+|||||||+|  .+        +..+++.+ .+|+|+|+                ..+.++.+|+.+++++ ++
T Consensus        34 ~l~~~~~ILDiGcG~G--~~--------~~~la~~~-~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~  102 (226)
T d1ve3a1          34 YMKKRGKVLDLACGVG--GF--------SFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKT  102 (226)
T ss_dssp             SCCSCCEEEEETCTTS--HH--------HHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTC
T ss_pred             hcCCCCEEEEECCCcc--hh--------hhhHhhhh-cccccccccccchhhhhhhhccccccccccccccccccccCcC
Confidence            3467789999999999  66        67777776 47999999                4678899999999887 89


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ||+|+|..++++++. .++..+|+++.++|+|||+|++...+
T Consensus       103 fD~I~~~~~l~~~~~-~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         103 FDYVIFIDSIVHFEP-LELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEEEESCGGGCCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ceEEEEecchhhCCh-hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            999999988887743 47889999999999999999987653

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=3.3e-16  Score=132.70  Aligned_cols=99  Identities=18%  Similarity=0.184  Sum_probs=81.6

Q ss_pred             HHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccc
Q psy9773          39 AAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKI  100 (252)
Q Consensus        39 ~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~  100 (252)
                      ..+.....+.+|.+|||||||+|  .+        +..+++....+|+|+|+                  ++++|+.+|+
T Consensus        23 ~~l~~~~~l~pg~~VLDiGCG~G--~~--------~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~   92 (245)
T d1nkva_          23 ATLGRVLRMKPGTRILDLGSGSG--EM--------LCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA   92 (245)
T ss_dssp             HHHHHHTCCCTTCEEEEETCTTC--HH--------HHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred             HHHHHHcCCCCCCEEEEEcCCCC--HH--------HHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHH
Confidence            34445567899999999999999  55        55666643357999999                  4689999999


Q ss_pred             cccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         101 ENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       101 ~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .++..+++||+|+|..+++++   .++..++.+++++|||||++++..+.
T Consensus        93 ~~~~~~~~fD~v~~~~~~~~~---~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_          93 AGYVANEKCDVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             TTCCCSSCEEEEEEESCGGGT---SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             hhccccCceeEEEEEehhhcc---CCHHHHHHHHHHHcCcCcEEEEEecc
Confidence            998656899999998887776   57789999999999999999998764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=2.3e-16  Score=132.16  Aligned_cols=91  Identities=19%  Similarity=0.212  Sum_probs=75.6

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCCC-CceeEEE
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVELP-EKVDIIV  113 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~-~~fDlIv  113 (252)
                      ...++.+|||+|||+|  .+        +..+++.|. +|+|+|+           ....++.+|+.+++++ ++||+|+
T Consensus        39 ~~~~~~~vLDiGcG~G--~~--------~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii  107 (246)
T d2avna1          39 YLKNPCRVLDLGGGTG--KW--------SLFLQERGF-EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVL  107 (246)
T ss_dssp             HCCSCCEEEEETCTTC--HH--------HHHHHTTTC-EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEE
T ss_pred             hcCCCCEEEEECCCCc--hh--------cccccccce-EEEEeeccccccccccccccccccccccccccccccccccee
Confidence            3457789999999999  66        777788774 7999999           3345788999999887 8999999


Q ss_pred             ec-ccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         114 SE-WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       114 ~~-~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |. .+.+++   +++..+|.++.++|+|||+++++.++
T Consensus       108 ~~~~~~~~~---~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         108 ALGDVLSYV---ENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             ECSSHHHHC---SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             eecchhhhh---hhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            84 466666   67788999999999999999998754

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.64  E-value=4.5e-16  Score=131.72  Aligned_cols=94  Identities=21%  Similarity=0.199  Sum_probs=79.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCce
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      ...++++|||||||+|  .+        +..+++.|. +|+|+|+                .++.++++|+.+++++++|
T Consensus        34 ~~~~~~~vLDiGCG~G--~~--------~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~f  102 (246)
T d1y8ca_          34 NNLVFDDYLDLACGTG--NL--------TENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKF  102 (246)
T ss_dssp             TTCCTTEEEEETCTTS--TT--------HHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCE
T ss_pred             hCCCCCeEEEEeCcCC--HH--------HHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhcccccc
Confidence            3455689999999999  66        778888874 7999999                4789999999999888899


Q ss_pred             eEEEec-ccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSE-WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~-~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|+|. .+.+++.+..++..+|..++++|+|||+|++...+
T Consensus       103 D~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  144 (246)
T d1y8ca_         103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             cccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence            999984 45577778889999999999999999999986543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.59  E-value=1.7e-15  Score=129.00  Aligned_cols=94  Identities=17%  Similarity=0.195  Sum_probs=77.6

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC-
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP-  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~-  106 (252)
                      ...++.+|||||||+|+.          +..++..+..+|+|+|+                  .++.++++|+...++. 
T Consensus        21 ~~~~~~~VLDlGCG~G~~----------~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~   90 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGD----------LLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL   90 (252)
T ss_dssp             HCCTTCEEEEETCTTTTT----------HHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC
T ss_pred             hCCCcCEEEEecccCcHH----------HHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc
Confidence            467889999999999944          44566667678999999                  3688999999777653 


Q ss_pred             -CceeEEEecccccccC-ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 -EKVDIIVSEWMGFYLL-HESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 -~~fDlIv~~~~~~~l~-~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                       ++||+|+|..+++++. +..++..+|..+.++|+|||+|++..+
T Consensus        91 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_          91 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence             6899999988887764 455788999999999999999998764

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-15  Score=125.93  Aligned_cols=94  Identities=15%  Similarity=0.163  Sum_probs=76.9

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC-
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP-  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~-  106 (252)
                      ....++.+|||||||+|  .+        +..++..++.+|+|+|+                 .+++|+++|+.+++++ 
T Consensus        56 ~~~~~~~~vLDiGcG~G--~~--------~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~  125 (222)
T d2ex4a1          56 PNKTGTSCALDCGAGIG--RI--------TKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP  125 (222)
T ss_dssp             --CCCCSEEEEETCTTT--HH--------HHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS
T ss_pred             cCCCCCCEEEEeccCCC--Hh--------hHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccc
Confidence            34566789999999999  65        55555555578999999                 4578999999999876 


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++||+|++..++++++.. ++..+|..++++|+|||.+++...
T Consensus       126 ~~fD~I~~~~~l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~  167 (222)
T d2ex4a1         126 DSYDVIWIQWVIGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDN  167 (222)
T ss_dssp             SCEEEEEEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccccccchhh-hhhhHHHHHHHhcCCcceEEEEEc
Confidence            899999999988887443 577899999999999999998764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=3.4e-15  Score=122.85  Aligned_cols=85  Identities=15%  Similarity=0.100  Sum_probs=71.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCCC-CceeEEEecc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVELP-EKVDIIVSEW  116 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~~-~~fDlIv~~~  116 (252)
                      .++.+|||||||+|  .+        +..+     .+++|+|+          .++.++++|+.+++++ ++||+|+|..
T Consensus        35 ~~~~~vLDiGcG~G--~~--------~~~~-----~~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~   99 (208)
T d1vlma_          35 LPEGRGVEIGVGTG--RF--------AVPL-----KIKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVT   99 (208)
T ss_dssp             CCSSCEEEETCTTS--TT--------HHHH-----TCCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEES
T ss_pred             CCCCeEEEECCCCc--cc--------cccc-----ceEEEEeCChhhccccccccccccccccccccccccccccccccc
Confidence            45678999999999  44        3333     24689999          6799999999999887 8999999988


Q ss_pred             cccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         117 MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       117 ~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +++++   +++..+|.++.++|+|||.+++..+.
T Consensus       100 ~l~h~---~d~~~~l~~~~~~L~pgG~l~i~~~~  130 (208)
T d1vlma_         100 TICFV---DDPERALKEAYRILKKGGYLIVGIVD  130 (208)
T ss_dssp             CGGGS---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccccc---cccccchhhhhhcCCCCceEEEEecC
Confidence            87777   67889999999999999999998764

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.56  E-value=6.4e-15  Score=123.29  Aligned_cols=90  Identities=17%  Similarity=0.150  Sum_probs=77.3

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCCCCceeEEE
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVELPEKVDIIV  113 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~~~~fDlIv  113 (252)
                      ...+.+|||||||+|  .+        +..++..| .+|+|+|+             .++.++.+++.+++++++||+|+
T Consensus        18 ~~~~~~VLDiGcG~G--~~--------~~~l~~~g-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~   86 (225)
T d2p7ia1          18 FFRPGNLLELGSFKG--DF--------TSRLQEHF-NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIV   86 (225)
T ss_dssp             GCCSSCEEEESCTTS--HH--------HHHHTTTC-SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEE
T ss_pred             hCCCCcEEEEeCCCc--HH--------HHHHHHcC-CeEEEEeCcHHHhhhhhccccccccccccccccccccccccccc
Confidence            356778999999999  66        67777776 46999999             56899999999988889999999


Q ss_pred             ecccccccCChhhHHHHHHHHh-ccccCCeEEEeeccc
Q psy9773         114 SEWMGFYLLHESMIDSVIFARD-KFLKPEGVMYPYKCI  150 (252)
Q Consensus       114 ~~~~~~~l~~~~~~~~~l~~l~-~~LkpgG~lv~~~~~  150 (252)
                      |..+++|+   .++..+|.+++ ++|+|||.+++..+.
T Consensus        87 ~~~vleh~---~d~~~~l~~i~~~~Lk~gG~l~i~~pn  121 (225)
T d2p7ia1          87 LTHVLEHI---DDPVALLKRINDDWLAEGGRLFLVCPN  121 (225)
T ss_dssp             EESCGGGC---SSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             ccceeEec---CCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence            98887777   67788999987 899999999998764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.55  E-value=9.3e-15  Score=119.87  Aligned_cols=90  Identities=20%  Similarity=0.175  Sum_probs=76.6

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCCCcee
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELPEKVD  110 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~fD  110 (252)
                      ..+.+|||||||+|  ..        +..+++.|+ +|+|+|+                 .++.+...|+..++++++||
T Consensus        29 ~~~grvLDiGcG~G--~~--------~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD   97 (198)
T d2i6ga1          29 VAPGRTLDLGCGNG--RN--------SLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYD   97 (198)
T ss_dssp             SCSCEEEEETCTTS--HH--------HHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEE
T ss_pred             CCCCcEEEECCCCC--HH--------HHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheeccccccccccc
Confidence            34569999999999  66        677788874 7999999                 56889999999998889999


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +|+|..++++++. .....++.++.++|+|||++++...
T Consensus        98 ~I~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          98 FILSTVVMMFLEA-QTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             EEEEESCGGGSCT-THHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEeeeeecCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999888887744 4688999999999999999998754

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.54  E-value=7.6e-15  Score=125.67  Aligned_cols=98  Identities=18%  Similarity=0.230  Sum_probs=79.4

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCC
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVEL  105 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~  105 (252)
                      ++.......+.+|||+|||+|  .+        +..++..++..|+++|+               .+++++++|+.++++
T Consensus        85 fl~~l~~~~~~~vLD~GcG~G--~~--------t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~  154 (254)
T d1xtpa_          85 FIASLPGHGTSRALDCGAGIG--RI--------TKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL  154 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTT--HH--------HHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCC
T ss_pred             HHhhCCCCCCCeEEEecccCC--hh--------hHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEcccccccc
Confidence            333345567789999999999  55        55555444568999999               568899999999987


Q ss_pred             C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 ~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      + ++||+|++.++++|+... ++..+|.+++++|+|||+|++..+
T Consensus       155 ~~~~fD~I~~~~vl~hl~d~-d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         155 PPNTYDLIVIQWTAIYLTDA-DFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             CSSCEEEEEEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCccceEEeeccccccchh-hhHHHHHHHHHhcCCCcEEEEEec
Confidence            6 889999999998887443 578999999999999999998764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.51  E-value=2.2e-14  Score=115.53  Aligned_cols=93  Identities=10%  Similarity=-0.028  Sum_probs=75.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------------------CceEEE
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------------------LILEVI   96 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------------------~~i~~~   96 (252)
                      ...+|.+|||+|||+|  ..        +..+++.|. +|+|+|+                             ..++++
T Consensus        17 ~~~~~~rvLd~GCG~G--~~--------a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (201)
T d1pjza_          17 NVVPGARVLVPLCGKS--QD--------MSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW   85 (201)
T ss_dssp             CCCTTCEEEETTTCCS--HH--------HHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             CCCCCCEEEEecCcCC--HH--------HHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence            4678999999999999  66        778888884 7999998                             235788


Q ss_pred             EccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          97 QNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        97 ~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++|+..++..  ..||+|++..+++++. ..+...++..+.++|||||++++....
T Consensus        86 ~~d~~~l~~~~~~~~D~i~~~~~l~~l~-~~~~~~~~~~i~~~LkpgG~l~l~~~~  140 (201)
T d1pjza_          86 CGDFFALTARDIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLE  140 (201)
T ss_dssp             EECCSSSTHHHHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred             cccccccccccccceeEEEEEeeeEecc-hhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence            8888887654  6899999988877663 346789999999999999998876544

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.50  E-value=5.6e-14  Score=121.66  Aligned_cols=93  Identities=15%  Similarity=0.138  Sum_probs=77.1

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC----------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~----------------~~i~~~~~d~~~~~~~  106 (252)
                      ....++.+|||+|||+|  .+        +..++.. +. .+|+|+|+                .+++|+++|+..++++
T Consensus        23 ~~~~~~~~ILDiGcG~G--~~--------~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~   92 (281)
T d2gh1a1          23 WKITKPVHIVDYGCGYG--YL--------GLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN   92 (281)
T ss_dssp             SCCCSCCEEEEETCTTT--HH--------HHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS
T ss_pred             hccCCcCEEEEecCcCC--HH--------HHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc
Confidence            35667899999999999  65        5566653 22 47999999                3688999999998877


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++||+|+|..+++++   +++..+|.++.++|||||.+++..+.
T Consensus        93 ~~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          93 DKYDIAICHAFLLHM---TTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             SCEEEEEEESCGGGC---SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCceEEEEehhhhcC---CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            889999998887777   67789999999999999999987753

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.3e-14  Score=116.78  Aligned_cols=93  Identities=9%  Similarity=-0.125  Sum_probs=77.2

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------------------------C
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------------------------L   91 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------------------------~   91 (252)
                      ...++.+|||+|||+|  ..        +..+++.|. +|+|+|+                                  .
T Consensus        42 ~~~~~~rvLd~GCG~G--~~--------a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (229)
T d2bzga1          42 KGKSGLRVFFPLCGKA--VE--------MKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSG  110 (229)
T ss_dssp             TTCCSCEEEETTCTTC--TH--------HHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred             CCCCCCEEEEeCCCCc--HH--------HHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCC
Confidence            4678899999999999  55        678888885 7999998                                  2


Q ss_pred             ceEEEEccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          92 ILEVIQNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        92 ~i~~~~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +++++++|+..++..  +.||+|+...+++++. ......++..+.++|+|||++++....
T Consensus       111 ~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~-~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         111 NISLYCCSIFDLPRTNIGKFDMIWDRGALVAIN-PGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             SEEEEESCGGGGGGSCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             cEEEEEcchhhccccccCceeEEEEEEEEEecc-chhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            578999999888544  7899999988777764 457889999999999999998877654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.46  E-value=1.8e-13  Score=118.75  Aligned_cols=97  Identities=21%  Similarity=0.140  Sum_probs=77.7

Q ss_pred             HHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------------CceEEEEcc
Q psy9773          39 AAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------------LILEVIQNK   99 (252)
Q Consensus        39 ~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------------~~i~~~~~d   99 (252)
                      +.+.....+.+|.+|||||||+|  .+        +..+++. | .+|+|+++                  .++.+...|
T Consensus        42 ~~~~~~l~l~~g~~VLDiGCG~G--~~--------a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d  110 (280)
T d2fk8a1          42 DLNLDKLDLKPGMTLLDIGCGWG--TT--------MRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG  110 (280)
T ss_dssp             HHHHTTSCCCTTCEEEEESCTTS--HH--------HHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC
T ss_pred             HHHHHHcCCCCCCEEEEecCCch--HH--------HHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhh
Confidence            34555678899999999999999  55        6666654 5 58999999                  456677777


Q ss_pred             ccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         100 IENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       100 ~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ...+  +++||.|++..++.++.. .++..+|+++.++|||||++++...
T Consensus       111 ~~~~--~~~fD~i~si~~~eh~~~-~~~~~~f~~i~~~LkpgG~~~i~~i  157 (280)
T d2fk8a1         111 WEDF--AEPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSS  157 (280)
T ss_dssp             GGGC--CCCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             hhhh--ccchhhhhHhhHHHHhhh-hhHHHHHHHHHhccCCCceEEEEEe
Confidence            6655  478999999888877643 4688999999999999999998753

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.45  E-value=9.9e-14  Score=115.70  Aligned_cols=93  Identities=16%  Similarity=0.215  Sum_probs=73.0

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc---CCCcEEEeeC------------------CceEEEEccccccC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV---HPLDHYAPQY------------------LILEVIQNKIENVE  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~---g~~~v~gvD~------------------~~i~~~~~d~~~~~  104 (252)
                      ...++.+|||||||+|  .+        +..+++.   +..+|+|+|+                  .++.+..+|+.+++
T Consensus        36 ~~~~~~~vLDlGCGtG--~~--------~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~  105 (225)
T d1im8a_          36 FVTADSNVYDLGCSRG--AA--------TLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE  105 (225)
T ss_dssp             HCCTTCEEEEESCTTC--HH--------HHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC
T ss_pred             hcCCCCEEEEeccchh--hH--------HHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc
Confidence            3578899999999999  55        5555542   2357999999                  45677777777664


Q ss_pred             CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      . ..+|+|+|..+++++ +..++..+|++++++|+|||.|++....
T Consensus       106 ~-~~~d~i~~~~~l~~~-~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         106 I-KNASMVILNFTLQFL-PPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             C-CSEEEEEEESCGGGS-CGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             c-ccceeeEEeeecccc-ChhhHHHHHHHHHHhCCCCceeeccccc
Confidence            3 578999998887775 5558899999999999999999997654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=3.4e-13  Score=117.67  Aligned_cols=101  Identities=22%  Similarity=0.107  Sum_probs=78.8

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC------------------CceEEEE
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY------------------LILEVIQ   97 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~------------------~~i~~~~   97 (252)
                      -.+.+.....+.+|.+|||||||.|  .+        +..++. .| .+|+|+++                  .++.+..
T Consensus        49 k~~~~~~~l~l~~G~~VLDiGCG~G--~~--------~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~  117 (291)
T d1kpia_          49 KRKLALDKLNLEPGMTLLDIGCGWG--ST--------MRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI  117 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTS--HH--------HHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE
T ss_pred             HHHHHHHhcCCCCCCEEEEecCcch--HH--------HHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhh
Confidence            3445666678999999999999999  55        555554 66 57999999                  5677777


Q ss_pred             ccccccCCCCceeEEEecccccccCC------hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          98 NKIENVELPEKVDIIVSEWMGFYLLH------ESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        98 ~d~~~~~~~~~fDlIv~~~~~~~l~~------~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .|....  +++||.|+|..++.|+.+      ...+..+|+++.++|+|||++++....
T Consensus       118 ~d~~~~--~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         118 QGWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             CCGGGC--CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             hccccc--ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence            776432  378999999888777653      246889999999999999999987643

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.43  E-value=3.4e-13  Score=110.38  Aligned_cols=96  Identities=14%  Similarity=0.153  Sum_probs=74.9

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEcccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIE  101 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~  101 (252)
                      +.......++.+|||+|||+|  .+        +..++..+ .+|+++|+                   .++.++.+|+.
T Consensus        44 Li~~l~~~~~~~VLDiGcG~G--~~--------~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~  112 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGYG--VI--------GIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLY  112 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTTS--HH--------HHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTT
T ss_pred             HHHhCCcCCCCeEEEEeecCC--hh--------HHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchh
Confidence            333346778899999999999  77        77777765 57999999                   35889999998


Q ss_pred             ccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         102 NVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       102 ~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +...+++||+|+++.+.++.  ......++..+.++|+|||++++...
T Consensus       113 ~~~~~~~fD~Ii~~~p~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~  158 (194)
T d1dusa_         113 ENVKDRKYNKIITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             TTCTTSCEEEEEECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhccCCceEEEEcccEEec--chhhhhHHHHHHHhcCcCcEEEEEEe
Confidence            75444899999998764432  23357889999999999999987643

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=6.7e-13  Score=115.46  Aligned_cols=100  Identities=23%  Similarity=0.167  Sum_probs=81.1

Q ss_pred             HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC------------------CceEEE
Q psy9773          36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY------------------LILEVI   96 (252)
Q Consensus        36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~------------------~~i~~~   96 (252)
                      ...+.+.....+.+|.+|||||||.|  .+        ++.+++ .| .+|+|+++                  .++++.
T Consensus        49 ~k~~~~~~~l~l~~G~~VLDiGCG~G--~~--------a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~  117 (285)
T d1kpga_          49 AKIDLALGKLGLQPGMTLLDVGCGWG--AT--------MMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVL  117 (285)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEETCTTS--HH--------HHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEE
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCcch--HH--------HHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhhhhhhhHHH
Confidence            33455666778999999999999999  55        555444 66 57999999                  688999


Q ss_pred             EccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          97 QNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        97 ~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .+|...++  ++||.|++..+..++.+ .....+++++.++|+|||++++...
T Consensus       118 ~~d~~~~~--~~fD~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         118 LAGWEQFD--EPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             ESCGGGCC--CCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             Hhhhhccc--ccccceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEEEE
Confidence            99988775  78999999888777644 3578999999999999999998654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=1.3e-13  Score=119.53  Aligned_cols=92  Identities=13%  Similarity=0.033  Sum_probs=68.1

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------------CceEEEEcccccc--
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------------LILEVIQNKIENV--  103 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------------~~i~~~~~d~~~~--  103 (252)
                      ..++.+|||+|||+|  .+        +..+++.|. +|+|+|+                     ....+..+++..+  
T Consensus        54 ~~~~~~vLD~GcG~G--~~--------~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T d1xvaa_          54 QHGCHRVLDVACGTG--VD--------SIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  122 (292)
T ss_dssp             HTTCCEEEESSCTTS--HH--------HHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             hcCCCEEEEecCCCc--HH--------HHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence            346789999999999  66        677788874 7999999                     1233445555433  


Q ss_pred             --CCCCceeEEEecc-cccccCC----hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         104 --ELPEKVDIIVSEW-MGFYLLH----ESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       104 --~~~~~fDlIv~~~-~~~~l~~----~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                        +...+||+|+|.. +++|+++    ..++..+|++++++|+|||+|++...
T Consensus       123 ~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         123 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             HSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence              3337899999843 4556543    24688899999999999999999754

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.39  E-value=7.7e-13  Score=112.51  Aligned_cols=93  Identities=18%  Similarity=0.221  Sum_probs=73.6

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEccccccCCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQNKIENVELPE  107 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~d~~~~~~~~  107 (252)
                      .....++|||||||+|  .+        +..+++..+ .+++++|+                 .+++++.+|+.+. .+.
T Consensus        77 d~~~~~~VLDvGcG~G--~~--------~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~~  145 (253)
T d1tw3a2          77 DWTNVRHVLDVGGGKG--GF--------AAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LPR  145 (253)
T ss_dssp             CCTTCSEEEEETCTTS--HH--------HHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSS
T ss_pred             CCccCCEEEEeCCCCC--HH--------HHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-ccc
Confidence            4456689999999999  55        566666433 57889997                 6799999998763 346


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +||+|++..++|++.. .+...+|++++++|+|||+|++....
T Consensus       146 ~~D~v~~~~vlh~~~d-~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         146 KADAIILSFVLLNWPD-HDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             CEEEEEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             chhheeeccccccCCc-hhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            7999999988887633 35678999999999999999987654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.39  E-value=4.1e-13  Score=109.22  Aligned_cols=93  Identities=18%  Similarity=0.137  Sum_probs=75.0

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIEN  102 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~  102 (252)
                      +.......++.+|||+|||+|  .+        ++.+++.+ .+|+|+|+                  .++.++++|+.+
T Consensus        25 il~~l~~~~g~~VLDiGcGsG--~~--------s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~   93 (186)
T d1l3ia_          25 IMCLAEPGKNDVAVDVGCGTG--GV--------TLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE   93 (186)
T ss_dssp             HHHHHCCCTTCEEEEESCTTS--HH--------HHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred             HHHhcCCCCCCEEEEEECCeE--cc--------cccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh
Confidence            333346789999999999999  66        77777764 58999999                  589999999988


Q ss_pred             cCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         103 VELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       103 ~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ...+ ..||+|++....      ..+..++..+.+.|+|||++++....
T Consensus        94 ~~~~~~~~D~v~~~~~~------~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          94 ALCKIPDIDIAVVGGSG------GELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             HHTTSCCEEEEEESCCT------TCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             cccccCCcCEEEEeCcc------ccchHHHHHHHHHhCcCCEEEEEeec
Confidence            8766 889999985532      24567899999999999999887643

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=9.1e-13  Score=113.18  Aligned_cols=84  Identities=14%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------CceEEEEccccccCCC-CceeEE
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------LILEVIQNKIENVELP-EKVDII  112 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------~~i~~~~~d~~~~~~~-~~fDlI  112 (252)
                      ..++.+|||+|||+|  .+        +..++..++ ..++|+|+            .++.++++|+.+++++ ++||+|
T Consensus        82 ~~~~~~iLDiGcG~G--~~--------~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v  151 (268)
T d1p91a_          82 DDKATAVLDIGCGEG--YY--------THAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAI  151 (268)
T ss_dssp             CTTCCEEEEETCTTS--TT--------HHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEE
T ss_pred             CCCCCEEEEeCCCCc--HH--------HHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEE
Confidence            456789999999999  55        556666543 57999999            7899999999999987 899999


Q ss_pred             EecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++..+.++          +.++.|+|||||+|++..+.
T Consensus       152 ~~~~~~~~----------~~e~~rvLkpgG~l~~~~p~  179 (268)
T d1p91a_         152 IRIYAPCK----------AEELARVVKPGGWVITATPG  179 (268)
T ss_dssp             EEESCCCC----------HHHHHHHEEEEEEEEEEEEC
T ss_pred             eecCCHHH----------HHHHHHHhCCCcEEEEEeeC
Confidence            98554322          35678999999999998764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.35  E-value=6.8e-13  Score=113.61  Aligned_cols=95  Identities=18%  Similarity=0.232  Sum_probs=73.3

Q ss_pred             HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEc
Q psy9773          35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQN   98 (252)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~   98 (252)
                      ....+.+..  ...+|++|||+|||+|  .+        ++.+++.|+ +|+|+|+                -++.++++
T Consensus       108 ~l~l~~l~~--~~~~g~~VLDiGcGsG--~l--------~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~  174 (254)
T d2nxca1         108 RLALKALAR--HLRPGDKVLDLGTGSG--VL--------AIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEG  174 (254)
T ss_dssp             HHHHHHHHH--HCCTTCEEEEETCTTS--HH--------HHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEES
T ss_pred             hHHHHHHHh--hcCccCEEEEcccchh--HH--------HHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEec
Confidence            334444442  4578999999999999  77        888888874 6999999                35678888


Q ss_pred             cccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773          99 KIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        99 d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      |+......++||+|+++...      ..+..++..+.++|||||+|+++.
T Consensus       175 d~~~~~~~~~fD~V~ani~~------~~l~~l~~~~~~~LkpGG~lilSg  218 (254)
T d2nxca1         175 SLEAALPFGPFDLLVANLYA------ELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             CHHHHGGGCCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccchhhhcccc------ccHHHHHHHHHHhcCCCcEEEEEe
Confidence            88765434899999985432      346678889999999999999864

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6e-13  Score=112.16  Aligned_cols=94  Identities=14%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC--------------ce------------------
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL--------------IL------------------   93 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~--------------~i------------------   93 (252)
                      ...+|.+|||||||+|  .+        +..++..++.+|+|+|+.              ..                  
T Consensus        48 ~~~~g~~vLDlGcG~G--~~--------~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (257)
T d2a14a1          48 GGLQGDTLIDIGSGPT--IY--------QVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNS  117 (257)
T ss_dssp             TSCCEEEEEESSCTTC--CG--------GGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCG
T ss_pred             cCCCCCEEEEECCCCC--Hh--------HHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhcccc
Confidence            4567889999999999  55        556666666789999990              00                  


Q ss_pred             ---------------EEEEccccc----cCCC-CceeEEEecccccccCC-hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          94 ---------------EVIQNKIEN----VELP-EKVDIIVSEWMGFYLLH-ESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        94 ---------------~~~~~d~~~----~~~~-~~fDlIv~~~~~~~l~~-~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                                     .....+...    .+.+ ++||+|++..+++++.. ..++..++.++.++|||||+|++...
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~  194 (257)
T d2a14a1         118 GRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  194 (257)
T ss_dssp             GGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             chHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence                           011111111    1222 78999999888887753 34788999999999999999998764

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.1e-12  Score=112.27  Aligned_cols=95  Identities=16%  Similarity=0.240  Sum_probs=70.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------C-----------------
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------L-----------------   91 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~-----------------   91 (252)
                      .....|.+|||+|||+|  .+        +.+.+..+..+|+|+|+                .                 
T Consensus        50 ~g~~~g~~vLDiGcG~g--~~--------~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  119 (263)
T d2g72a1          50 TGEVSGRTLIDIGSGPT--VY--------QLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGK  119 (263)
T ss_dssp             TSCSCCSEEEEETCTTC--CG--------GGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCS
T ss_pred             CCCCCCcEEEEeccCCC--HH--------HHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccc
Confidence            45678899999999999  55        55545444568999999                0                 


Q ss_pred             --------------ceEEEEccccccCC-------CCceeEEEecccccccC-ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          92 --------------ILEVIQNKIENVEL-------PEKVDIIVSEWMGFYLL-HESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        92 --------------~i~~~~~d~~~~~~-------~~~fDlIv~~~~~~~l~-~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                                    ...++.+|+.....       +++||+|++..+++++. +..++..+|+++.++|||||+|++...
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~  199 (263)
T d2g72a1         120 GECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  199 (263)
T ss_dssp             CCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence                          01234456644321       15799999988888775 445789999999999999999998764

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.5e-12  Score=109.22  Aligned_cols=92  Identities=23%  Similarity=0.231  Sum_probs=71.2

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEcccccc--CCC-C
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENV--ELP-E  107 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~--~~~-~  107 (252)
                      ..+|.+|||||||+|  ..        +..+++.++.++++||+                .++.++..++...  .++ +
T Consensus        51 ~~~g~~VLdIGcG~G--~~--------a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMA--IA--------ASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDG  120 (229)
T ss_dssp             TTTCEEEEEECCTTS--HH--------HHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTT
T ss_pred             ccCCCeEEEeeccch--HH--------HHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccc
Confidence            367889999999999  66        66777766578999999                4567777776655  333 7


Q ss_pred             ceeEEEeccc--ccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         108 KVDIIVSEWM--GFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       108 ~fDlIv~~~~--~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +||+|+...+  .+.+.+..+...++..+.|+|||||+|++..
T Consensus       121 ~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         121 HFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             CEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             cccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            8999986332  2445566788999999999999999998754

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.28  E-value=8e-12  Score=106.58  Aligned_cols=94  Identities=18%  Similarity=0.195  Sum_probs=74.2

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~d~~~~~~~  106 (252)
                      ......++|||||||+|  .+        +..+++..+ .+++++|+                 .++.++.+|+.. +.+
T Consensus        77 ~d~~~~~~vlDvG~G~G--~~--------~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p  145 (256)
T d1qzza2          77 YDWSAVRHVLDVGGGNG--GM--------LAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP  145 (256)
T ss_dssp             SCCTTCCEEEEETCTTS--HH--------HHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS
T ss_pred             CCCccCCEEEEECCCCC--HH--------HHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc
Confidence            34456689999999999  55        566666543 57999998                 679999999876 345


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..||+|++.+++|++. ..+...+|+++++.|+|||+|++....
T Consensus       146 ~~~D~v~~~~vLh~~~-d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         146 VTADVVLLSFVLLNWS-DEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             CCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccchhhhccccccccC-cHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            6799999999888763 346778999999999999999987643

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.27  E-value=7.2e-12  Score=105.54  Aligned_cols=102  Identities=18%  Similarity=0.041  Sum_probs=74.2

Q ss_pred             HHHHHHHh---CCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------CceEEE
Q psy9773          36 AYRAAICD---NPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------LILEVI   96 (252)
Q Consensus        36 ~~~~~l~~---~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------~~i~~~   96 (252)
                      .+.++|..   ..++.+|.+|||||||+|  ..        +..++..+ ...|+|+|+               +++.++
T Consensus        58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG--~~--------~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i  127 (230)
T d1g8sa_          58 KLAAAIIKGLKVMPIKRDSKILYLGASAG--TT--------PSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPI  127 (230)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEESCCSS--HH--------HHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEE
T ss_pred             HHHHHHHhhHHhCCCCCCCEEEEeCEEcC--HH--------HHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceE
Confidence            34445544   356889999999999999  55        55666653 358999999               677888


Q ss_pred             EccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          97 QNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        97 ~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+|.......  ..+|++++...   +.+..+...++.++.+.|||||++++....
T Consensus       128 ~~d~~~~~~~~~~~~~v~~i~~~---~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~  180 (230)
T d1g8sa_         128 LGDANKPQEYANIVEKVDVIYED---VAQPNQAEILIKNAKWFLKKGGYGMIAIKA  180 (230)
T ss_dssp             ECCTTCGGGGTTTCCCEEEEEEC---CCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             EEeeccCcccccccceeEEeecc---ccchHHHHHHHHHHHHhcccCceEEEEeec
Confidence            8888776433  45666555333   334467889999999999999999987644

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.27  E-value=3.3e-12  Score=108.96  Aligned_cols=92  Identities=15%  Similarity=0.130  Sum_probs=72.4

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC------------------CceEEEEccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY------------------LILEVIQNKI  100 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~------------------~~i~~~~~d~  100 (252)
                      |.....+.+|.+|||+|||+|  .+        +..+++. ++ .+|+++|.                  .++++..+|+
T Consensus        77 Ii~~l~i~pG~rVLEiG~GsG--~l--------t~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di  146 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGSG--NM--------SSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI  146 (250)
T ss_dssp             ----CCCCTTCEEEEECCTTS--HH--------HHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT
T ss_pred             HHHHcCCCCcCEEEEeeeeCc--HH--------HHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence            444578899999999999999  66        6666653 33 58999999                  6899999999


Q ss_pred             cccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         101 ENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       101 ~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+.....+||.|+++.        +++..+|..+.++|||||+|++..++
T Consensus       147 ~~~~~~~~fD~V~ld~--------p~p~~~l~~~~~~LKpGG~lv~~~P~  188 (250)
T d1yb2a1         147 ADFISDQMYDAVIADI--------PDPWNHVQKIASMMKPGSVATFYLPN  188 (250)
T ss_dssp             TTCCCSCCEEEEEECC--------SCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             ecccccceeeeeeecC--------CchHHHHHHHHHhcCCCceEEEEeCC
Confidence            8875558899998732        35567899999999999999988775

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.26  E-value=7.6e-12  Score=103.89  Aligned_cols=98  Identities=21%  Similarity=0.192  Sum_probs=72.8

Q ss_pred             HHHHHHh--CCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC---------------CceEEEEc
Q psy9773          37 YRAAICD--NPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY---------------LILEVIQN   98 (252)
Q Consensus        37 ~~~~l~~--~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~---------------~~i~~~~~   98 (252)
                      +..++..  ...+.+|.+|||+|||+|  ..        +..++. .+..+|+|+|+               +++.++.+
T Consensus        42 laa~i~~g~~l~lkpg~~VLDlGcG~G--~~--------~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~  111 (209)
T d1nt2a_          42 LAAMILKGHRLKLRGDERVLYLGAASG--TT--------VSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLF  111 (209)
T ss_dssp             HHHHHHTSCCCCCCSSCEEEEETCTTS--HH--------HHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECS
T ss_pred             HHHHHhccccCCCCCCCEEEEeCCcCC--HH--------HHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEe
Confidence            3444543  356789999999999999  55        455555 34458999999               78999999


Q ss_pred             cccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          99 KIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        99 d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      |+......    ..+|+|++.     +.+..+...++.++.++|||||++++...
T Consensus       112 d~~~~~~~~~~~~~vd~v~~~-----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  161 (209)
T d1nt2a_         112 DASKPWKYSGIVEKVDLIYQD-----IAQKNQIEILKANAEFFLKEKGEVVIMVK  161 (209)
T ss_dssp             CTTCGGGTTTTCCCEEEEEEC-----CCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eccCccccccccceEEEEEec-----ccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence            99887544    345555442     34445788899999999999999988754

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.25  E-value=4.8e-12  Score=108.74  Aligned_cols=94  Identities=24%  Similarity=0.343  Sum_probs=76.2

Q ss_pred             HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC--------------------CceEEEE
Q psy9773          40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY--------------------LILEVIQ   97 (252)
Q Consensus        40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~--------------------~~i~~~~   97 (252)
                      .|.....+.+|.+|||+|||+|  .+        +..+++. |+ .+|+++|+                    .++.+.+
T Consensus        87 ~Ii~~l~i~PG~~VLE~G~GsG--~l--------t~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~  156 (264)
T d1i9ga_          87 QIVHEGDIFPGARVLEAGAGSG--AL--------TLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV  156 (264)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTS--HH--------HHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC
T ss_pred             HHHHHhCCCCCCEEEecCcCCc--HH--------HHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEe
Confidence            3444467899999999999999  55        5566653 43 58999999                    5889999


Q ss_pred             ccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773          98 NKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus        98 ~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                      +|+.+.+++ ++||.|+++     +   +++..++..+.++|||||+|++..++.
T Consensus       157 ~d~~~~~~~~~~fDaV~ld-----l---p~P~~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         157 SDLADSELPDGSVDRAVLD-----M---LAPWEVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             SCGGGCCCCTTCEEEEEEE-----S---SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             cccccccccCCCcceEEEe-----c---CCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence            999988776 899999763     2   566788999999999999999988763

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.25  E-value=2.2e-12  Score=101.77  Aligned_cols=93  Identities=15%  Similarity=0.044  Sum_probs=71.9

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC-C
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE-L  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~-~  105 (252)
                      .....|.+|||+|||||  .+        ++.++.+|+++|+++|.                  .+++++++|+..+. .
T Consensus        10 ~~~~~g~~vlDl~~GtG--~~--------~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~   79 (152)
T d2esra1          10 GPYFNGGRVLDLFAGSG--GL--------AIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC   79 (152)
T ss_dssp             CSCCCSCEEEEETCTTC--HH--------HHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH
T ss_pred             HhhCCCCeEEEcCCccC--HH--------HHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc
Confidence            34567999999999999  88        88888899999999999                  66999999987752 2


Q ss_pred             -CCceeEEEecccccccCChhhHHHHHHHH--hccccCCeEEEeecccc
Q psy9773         106 -PEKVDIIVSEWMGFYLLHESMIDSVIFAR--DKFLKPEGVMYPYKCIL  151 (252)
Q Consensus       106 -~~~fDlIv~~~~~~~l~~~~~~~~~l~~l--~~~LkpgG~lv~~~~~~  151 (252)
                       .++||+|++++...    ......++..+  .++|+|||++++.+...
T Consensus        80 ~~~~fDiIf~DPPy~----~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~  124 (152)
T d2esra1          80 LTGRFDLVFLDPPYA----KETIVATIEALAAKNLLSEQVMVVCETDKT  124 (152)
T ss_dssp             BCSCEEEEEECCSSH----HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             cccccceeEechhhc----cchHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence             27899999976421    13344555544  46899999999987653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5.4e-12  Score=108.17  Aligned_cols=92  Identities=13%  Similarity=0.100  Sum_probs=62.1

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-----cCC--CcEEEeeC------------------CceE--EEE
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-----VHP--LDHYAPQY------------------LILE--VIQ   97 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-----~g~--~~v~gvD~------------------~~i~--~~~   97 (252)
                      ....++.+|||||||+|.  +        +..++.     .+.  ..++|+|+                  .++.  +..
T Consensus        36 ~~~~~~~~VLDiGcG~G~--~--------~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~  105 (280)
T d1jqea_          36 GDTKSEIKILSIGGGAGE--I--------DLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHK  105 (280)
T ss_dssp             TTTCSEEEEEEETCTTSH--H--------HHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEEC
T ss_pred             ccCCCCCeEEEEcCCCCH--H--------HHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchh
Confidence            334455689999999994  3        333222     111  25789998                  2222  333


Q ss_pred             cccccc------CC-CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          98 NKIENV------EL-PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        98 ~d~~~~------~~-~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .++..+      +. +++||+|+|..+++++   +++..+|..++++|+|||.|++...
T Consensus       106 ~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~---~d~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         106 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             SCHHHHHHHHTTSSSCCCEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhhhhhcchhcccCCCCceeEEEEccceecC---CCHHHHHHHHHhhCCCCCEEEEEEe
Confidence            333221      22 2789999998887776   6788999999999999999988764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=1.8e-11  Score=101.77  Aligned_cols=89  Identities=16%  Similarity=0.002  Sum_probs=66.8

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC-----------------CceEEEEcccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY-----------------LILEVIQNKIE  101 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~-----------------~~i~~~~~d~~  101 (252)
                      +.....+.+|.+|||+|||+|  .+        +..+++ .+. ..|+++|+                 .++.++++|..
T Consensus        67 ~l~~l~l~~g~~VLdiG~GtG--~~--------s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~  136 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGTG--YN--------AAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGY  136 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTTS--HH--------HHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             HHHhhhccccceEEEecCccc--hh--------HHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchH
Confidence            334457899999999999999  55        556655 332 47999998                 68889999988


Q ss_pred             ccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         102 NVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       102 ~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ...+. ++||+|++..+.+++   +      ..+.+.|+|||+|++..
T Consensus       137 ~~~~~~~~fD~I~~~~~~~~~---p------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         137 YGVPEFSPYDVIFVTVGVDEV---P------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             GCCGGGCCEEEEEECSBBSCC---C------HHHHHHEEEEEEEEEEB
T ss_pred             HccccccchhhhhhhccHHHh---H------HHHHHhcCCCcEEEEEE
Confidence            76555 789999997764443   2      23457799999998754

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.7e-11  Score=108.24  Aligned_cols=94  Identities=15%  Similarity=0.180  Sum_probs=72.9

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC--------------------------Cce
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY--------------------------LIL   93 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~--------------------------~~i   93 (252)
                      ++....+.++.+|||||||+|  .+        +..++. .++.+++|||+                          .++
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~G--~~--------~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i  212 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGVG--QV--------VLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY  212 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTTS--HH--------HHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             HHHHcCCCCCCEEEEcCCCCC--HH--------HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence            334467889999999999999  55        555554 56678999999                          368


Q ss_pred             EEEEccccccCCC---CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773          94 EVIQNKIENVELP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        94 ~~~~~d~~~~~~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .|+++|+.+.++.   ..+|+|+++..    .+.+++...|.++.+.|||||++++..
T Consensus       213 ~~~~gd~~~~~~~~~~~~advi~~~~~----~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         213 TLERGDFLSEEWRERIANTSVIFVNNF----AFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             EEEECCTTSHHHHHHHHHCSEEEECCT----TTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             EEEECcccccccccccCcceEEEEcce----ecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            9999999988765   23578887543    233678899999999999999999764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6.2e-11  Score=99.27  Aligned_cols=84  Identities=20%  Similarity=0.143  Sum_probs=64.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC----------------------CceEEEEcccc
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY----------------------LILEVIQNKIE  101 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~----------------------~~i~~~~~d~~  101 (252)
                      ...+|.+|||+|||+|  ..        +..+++ .+ ..+|+++|+                      .++.++.+|..
T Consensus        73 ~l~~g~~VLdiG~GsG--y~--------ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~  142 (224)
T d1i1na_          73 QLHEGAKALDVGSGSG--IL--------TACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  142 (224)
T ss_dssp             TSCTTCEEEEETCTTS--HH--------HHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             ccCCCCeEEEecCCCC--HH--------HHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence            6789999999999999  54        555554 33 348999998                      46888999998


Q ss_pred             ccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         102 NVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       102 ~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ....+ ++||+|++..+...+   +      ..+.+.|+|||+|++..
T Consensus       143 ~~~~~~~~fD~I~~~~~~~~i---p------~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         143 MGYAEEAPYDAIHVGAAAPVV---P------QALIDQLKPGGRLILPV  181 (224)
T ss_dssp             GCCGGGCCEEEEEECSBBSSC---C------HHHHHTEEEEEEEEEEE
T ss_pred             cccchhhhhhhhhhhcchhhc---C------HHHHhhcCCCcEEEEEE
Confidence            77665 789999997664433   2      23568899999999854

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.15  E-value=6.1e-11  Score=99.43  Aligned_cols=85  Identities=19%  Similarity=0.151  Sum_probs=66.1

Q ss_pred             hCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCCC-
Q psy9773          43 DNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVELP-  106 (252)
Q Consensus        43 ~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~~-  106 (252)
                      ....+.++.+|||+|||+|  .+        +..+++.+ .+|+++|+               .++.++.+|....... 
T Consensus        64 ~~L~l~~g~~VLdIG~GsG--y~--------ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~  132 (224)
T d1vbfa_          64 DELDLHKGQKVLEIGTGIG--YY--------TALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEE  132 (224)
T ss_dssp             HHTTCCTTCEEEEECCTTS--HH--------HHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGG
T ss_pred             HHhhhcccceEEEecCCCC--HH--------HHHHHHHh-cccccccccHHHHHHHHHHHhcccccccccCchhhcchhh
Confidence            3356889999999999999  66        77777775 67999998               7899999998765444 


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                      ++||+|++......+   +      ..+.+.|+|||+|++-
T Consensus       133 ~pfD~Iiv~~a~~~i---p------~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         133 KPYDRVVVWATAPTL---L------CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             CCEEEEEESSBBSSC---C------HHHHHTEEEEEEEEEE
T ss_pred             hhHHHHHhhcchhhh---h------HHHHHhcCCCCEEEEE
Confidence            789999986553333   2      2345789999999874

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.14  E-value=5.5e-11  Score=98.29  Aligned_cols=86  Identities=12%  Similarity=0.150  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccC--CC-Cc
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVE--LP-EK  108 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~--~~-~~  108 (252)
                      +..|||||||+|..+          ..++.. +...++|+|+                 .|+.++++|+..+.  ++ ++
T Consensus        30 ~PlvLeIGcG~G~~~----------~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~   99 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFI----------SGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGE   99 (204)
T ss_dssp             CCEEEEECCTTSHHH----------HHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTS
T ss_pred             CceEEEEEecCcHHH----------HHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchh
Confidence            458999999999444          444443 3468999998                 68999999998774  34 88


Q ss_pred             eeEEEecccccccCChhh--------HHHHHHHHhccccCCeEEEeec
Q psy9773         109 VDIIVSEWMGFYLLHESM--------IDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~--------~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +|.|++....   ++...        -..+|..+.++|||||+|++.+
T Consensus       100 ~d~v~i~fp~---P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         100 VKRVYLNFSD---PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCEEEEESCC---CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             hhcccccccc---ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            9999874432   22221        1478999999999999998865

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=5.4e-11  Score=104.82  Aligned_cols=95  Identities=25%  Similarity=0.215  Sum_probs=74.8

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCC---
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVEL---  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~---  105 (252)
                      ..+|.+|||+|||+|  .+        ++.++..|+++|+++|+                  .++.++++|+.+...   
T Consensus       143 ~~~g~~VLDl~~g~G--~~--------si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~  212 (324)
T d2as0a2         143 VQPGDRVLDVFTYTG--GF--------AIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ  212 (324)
T ss_dssp             CCTTCEEEETTCTTT--HH--------HHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred             cCCCCeeecccCccc--ch--------hhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHH
Confidence            567999999999999  77        77888888889999999                  578899999876521   


Q ss_pred             --CCceeEEEecccccccCCh-------hhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         106 --PEKVDIIVSEWMGFYLLHE-------SMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       106 --~~~fDlIv~~~~~~~l~~~-------~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                        ..+||+|++++..+. .+.       .+...++..+.++|+|||+|+.++++.+
T Consensus       213 ~~~~~fD~Vi~DpP~~~-~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~  267 (324)
T d2as0a2         213 KKGEKFDIVVLDPPAFV-QHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  267 (324)
T ss_dssp             HTTCCEEEEEECCCCSC-SSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             hccCCCCchhcCCcccc-CCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence              268999999664322 222       2456688888999999999999887643

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.10  E-value=2e-10  Score=96.35  Aligned_cols=100  Identities=23%  Similarity=0.189  Sum_probs=73.2

Q ss_pred             HHHHHHHh---CCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC---------------CceEE
Q psy9773          36 AYRAAICD---NPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY---------------LILEV   95 (252)
Q Consensus        36 ~~~~~l~~---~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~---------------~~i~~   95 (252)
                      .+..+|..   ...+.+|.+|||+|||+|  ..        +..+++ .|. .+|+|+|+               .++..
T Consensus        57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG--~~--------t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~  126 (227)
T d1g8aa_          57 KLGAAIMNGLKNFPIKPGKSVLYLGIASG--TT--------ASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVP  126 (227)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEETTTST--TH--------HHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEE
T ss_pred             HHHHHHHccccccccCCCCEEEEeccCCC--HH--------HHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceE
Confidence            34445543   356889999999999999  55        455555 343 58999999               56778


Q ss_pred             EEccccccCC---C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          96 IQNKIENVEL---P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        96 ~~~d~~~~~~---~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +..|......   . ..+|+|++..     .+..+...++.++.+.|+|||++++....
T Consensus       127 i~~d~~~~~~~~~~~~~vD~i~~d~-----~~~~~~~~~l~~~~~~LkpgG~lvi~~ka  180 (227)
T d1g8aa_         127 ILGDATKPEEYRALVPKVDVIFEDV-----AQPTQAKILIDNAEVYLKRGGYGMIAVKS  180 (227)
T ss_dssp             EECCTTCGGGGTTTCCCEEEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             EEEECCCcccccccccceEEEEEEc-----cccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence            8888865532   2 6789887632     34457788999999999999999987543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=6.9e-11  Score=104.25  Aligned_cols=90  Identities=21%  Similarity=0.192  Sum_probs=68.6

Q ss_pred             CCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC----------------------------Cce
Q psy9773          44 NPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY----------------------------LIL   93 (252)
Q Consensus        44 ~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~----------------------------~~i   93 (252)
                      ...+.+|.+|||+|||+|  .+        +..+++ .|+ .+|+++|+                            .++
T Consensus        93 ~l~i~pG~rVLE~GtGsG--~l--------t~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv  162 (324)
T d2b25a1          93 MMDINPGDTVLEAGSGSG--GM--------SLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV  162 (324)
T ss_dssp             HHTCCTTCEEEEECCTTS--HH--------HHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred             HhCCCCCCEEEEeccccc--HH--------HHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccce
Confidence            357899999999999999  55        566665 343 48999998                            368


Q ss_pred             EEEEccccccCCC---CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773          94 EVIQNKIENVELP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus        94 ~~~~~d~~~~~~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                      .+..+|+......   ..||.|+++.        +++..+|..+.++|||||+|++..+++
T Consensus       163 ~~~~~di~~~~~~~~~~~fD~V~LD~--------p~P~~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         163 DFIHKDISGATEDIKSLTFDAVALDM--------LNPHVTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             EEEESCTTCCC-------EEEEEECS--------SSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             eEEecchhhcccccCCCCcceEeecC--------cCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence            9999999877443   6899998632        345568899999999999999887764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=8.4e-11  Score=100.97  Aligned_cols=93  Identities=15%  Similarity=0.082  Sum_probs=71.8

Q ss_pred             HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC------------------CceEEEEcc
Q psy9773          40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY------------------LILEVIQNK   99 (252)
Q Consensus        40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~------------------~~i~~~~~d   99 (252)
                      .|.....+.+|.+|||+|||+|  .+        +..+++. ++ .+|+++|+                  .++.+...|
T Consensus        94 ~Ii~~l~i~pG~~VLDiG~GsG--~l--------t~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d  163 (266)
T d1o54a_          94 FIAMMLDVKEGDRIIDTGVGSG--AM--------CAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD  163 (266)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTS--HH--------HHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC
T ss_pred             HHHHhhCCCCCCEEEECCCCCC--HH--------HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc
Confidence            3444478899999999999999  66        6666653 32 48999999                  567788888


Q ss_pred             ccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         100 IENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +........||.|+..     +   +++..+|..+.++|||||+|++..++
T Consensus       164 ~~~~~~~~~~D~V~~d-----~---p~p~~~l~~~~~~LKpGG~lv~~~P~  206 (266)
T d1o54a_         164 ISEGFDEKDVDALFLD-----V---PDPWNYIDKCWEALKGGGRFATVCPT  206 (266)
T ss_dssp             GGGCCSCCSEEEEEEC-----C---SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             ccccccccceeeeEec-----C---CCHHHHHHHHHhhcCCCCEEEEEeCc
Confidence            7555444789998652     2   46678899999999999999988765

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.04  E-value=4.5e-10  Score=92.64  Aligned_cols=86  Identities=10%  Similarity=0.108  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccC--CC-Cc
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVE--LP-EK  108 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~--~~-~~  108 (252)
                      +..|||||||+|..+          ..+|+. +...++|+|+                 .++.++.+|+..+.  ++ .+
T Consensus        32 ~plvLdIGcG~G~~~----------~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~  101 (204)
T d1yzha1          32 NPIHVEVGSGKGAFV----------SGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGE  101 (204)
T ss_dssp             CCEEEEESCTTSHHH----------HHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTC
T ss_pred             CCeEEEEeccCCHHH----------HHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCc
Confidence            458999999999444          455554 3468999999                 78999999998874  33 78


Q ss_pred             eeEEEecccccccCChhh--------HHHHHHHHhccccCCeEEEeec
Q psy9773         109 VDIIVSEWMGFYLLHESM--------IDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~--------~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +|.|++...   .++...        -..+|..+.++|+|||.|++.+
T Consensus       102 ~~~i~i~fP---dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         102 IDRLYLNFS---DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CSEEEEESC---CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eehhccccc---ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            999977433   222221        2578999999999999998865

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=5.6e-10  Score=96.08  Aligned_cols=107  Identities=18%  Similarity=0.070  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceE
Q psy9773          33 RNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILE   94 (252)
Q Consensus        33 ~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~   94 (252)
                      .+..+...... .....+.+|||+|||+|+..+          .++. .+..+|+|+|+                 .++.
T Consensus        93 eTE~lv~~~l~-~~~~~~~~vlDlGtGSG~I~i----------~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~  161 (274)
T d2b3ta1          93 DTECLVEQALA-RLPEQPCRILDLGTGTGAIAL----------ALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIH  161 (274)
T ss_dssp             THHHHHHHHHH-HSCSSCCEEEEETCTTSHHHH----------HHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEE
T ss_pred             chhhhhhhHhh-hhcccccceeeeehhhhHHHH----------HHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccce
Confidence            34444443333 223456789999999995444          4433 44468999999                 5799


Q ss_pred             EEEccccccCCCCceeEEEecccccc----------cCCh------------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          95 VIQNKIENVELPEKVDIIVSEWMGFY----------LLHE------------SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        95 ~~~~d~~~~~~~~~fDlIv~~~~~~~----------l~~~------------~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++++|+.......+||+|+|++-.--          ..++            ..+..++..+.++|+|||.+++....
T Consensus       162 ~~~~d~~~~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~  239 (274)
T d2b3ta1         162 ILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW  239 (274)
T ss_dssp             EECCSTTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred             eeecccccccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            99999987544478999999653100          0011            13567888999999999999997643

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=3.6e-10  Score=102.29  Aligned_cols=92  Identities=13%  Similarity=0.140  Sum_probs=64.1

Q ss_pred             hCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHh-hcCCCcEEEeeC--------------------------CceEE
Q psy9773          43 DNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCT-KVHPLDHYAPQY--------------------------LILEV   95 (252)
Q Consensus        43 ~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a-~~g~~~v~gvD~--------------------------~~i~~   95 (252)
                      ....+.++.+|||||||+|  .+        ++.++ ..|+++++|||+                          ..+.+
T Consensus       210 ~~l~Lkpgd~fLDLGCG~G--~~--------vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~  279 (406)
T d1u2za_         210 QQCQLKKGDTFMDLGSGVG--NC--------VVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF  279 (406)
T ss_dssp             HHTTCCTTCEEEEESCTTS--HH--------HHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred             HHhCCCCCCEEEeCCCCCc--HH--------HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence            3367899999999999999  44        44554 456678999999                          11122


Q ss_pred             -EEccccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773          96 -IQNKIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        96 -~~~d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                       ..++....+..    ..+|+|+++..    .+.+++...|.++.+.|||||+|+...
T Consensus       280 ~~~~~f~~~~~~d~~~~~adVV~inn~----~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         280 SLKKSFVDNNRVAELIPQCDVILVNNF----LFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             EESSCSTTCHHHHHHGGGCSEEEECCT----TCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             eeeechhhccccccccccceEEEEecc----cCchHHHHHHHHHHHhcCCCcEEEEec
Confidence             23333322211    46788887542    334688999999999999999998764

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.99  E-value=2.6e-10  Score=100.15  Aligned_cols=97  Identities=14%  Similarity=0.049  Sum_probs=74.9

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccCC-
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVEL-  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~~-  105 (252)
                      ...+|++|||++||+|  .+        ++.++..|+..|+++|+                   .++.++++|+.++.. 
T Consensus       141 ~~~~g~~VLdlf~~~G--~~--------sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~  210 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTA--AF--------SVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKY  210 (317)
T ss_dssp             TTTBTCEEEEETCTTT--HH--------HHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHH
T ss_pred             HhhCCCceeecCCCCc--HH--------HHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHH
Confidence            3567899999999999  77        77788888889999999                   468899999976521 


Q ss_pred             ----CCceeEEEeccccccc------CChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         106 ----PEKVDIIVSEWMGFYL------LHESMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       106 ----~~~fDlIv~~~~~~~l------~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                          ..+||+||+++-.+.-      ....+...++..+.++|+|||+|++++++..
T Consensus       211 ~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~  267 (317)
T d2b78a2         211 ARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  267 (317)
T ss_dssp             HHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             HHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence                2689999997642211      1112567789999999999999999887633

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.97  E-value=3e-10  Score=97.10  Aligned_cols=85  Identities=12%  Similarity=-0.023  Sum_probs=68.4

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~  108 (252)
                      ..+|.+|||+|||+|  .+        ++.+++.|+.+|+|+|+                  +++.++++|+..+...+.
T Consensus       105 ~~~g~~VlD~~aG~G--~~--------~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~  174 (260)
T d2frna1         105 AKPDELVVDMFAGIG--HL--------SLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENI  174 (260)
T ss_dssp             CCTTCEEEETTCTTT--TT--------HHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSC
T ss_pred             cCCccEEEECcceEc--HH--------HHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCC
Confidence            478999999999999  77        77888888778999999                  579999999999877788


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ||.|++....       ....++..+.++|+|||++.+..
T Consensus       175 ~D~Ii~~~p~-------~~~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         175 ADRILMGYVV-------RTHEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             EEEEEECCCS-------SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEECCCC-------chHHHHHHHHhhcCCCCEEEEEe
Confidence            9999885431       11245666778899999986543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=6.1e-10  Score=90.12  Aligned_cols=89  Identities=12%  Similarity=0.073  Sum_probs=69.7

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC--Cc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP--EK  108 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~--~~  108 (252)
                      ..+.+|||++||||  .+        ++.++++|+.+|++||.                 .++.++++|+..+...  .+
T Consensus        42 ~~~~~vLDlfaGsG--~~--------giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~  111 (183)
T d2fpoa1          42 IVDAQCLDCFAGSG--AL--------GLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTP  111 (183)
T ss_dssp             HTTCEEEETTCTTC--HH--------HHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCC
T ss_pred             cchhhhhhhhcccc--ce--------eeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccc
Confidence            57789999999999  88        88899999999999999                 6788999998776322  78


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHh--ccccCCeEEEeeccc
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARD--KFLKPEGVMYPYKCI  150 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~--~~LkpgG~lv~~~~~  150 (252)
                      ||+|++++-..    ......++..+.  .+|+|+|++++.+..
T Consensus       112 fDlIf~DPPY~----~~~~~~~l~~l~~~~~L~~~~iIiiE~~~  151 (183)
T d2fpoa1         112 HNIVFVDPPFR----RGLLEETINLLEDNGWLADEALIYVESEV  151 (183)
T ss_dssp             EEEEEECCSSS----TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             cCEEEEcCccc----cchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            99999977422    123445555553  579999999998654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.94  E-value=7.7e-10  Score=92.01  Aligned_cols=84  Identities=21%  Similarity=0.228  Sum_probs=64.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~  106 (252)
                      ....++.+|||||||||  ..        +..++.. | .+|+++|.                 .++.++++|.......
T Consensus        74 L~l~~g~~VLeIGsGsG--Y~--------taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~  142 (215)
T d1jg1a_          74 ANLKPGMNILEVGTGSG--WN--------AALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP  142 (215)
T ss_dssp             HTCCTTCCEEEECCTTS--HH--------HHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred             hccCccceEEEecCCCC--hh--------HHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcc
Confidence            46889999999999999  55        6666654 4 46999999                 7899999999876544


Q ss_pred             -CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         107 -EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       107 -~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                       ++||.|++......+   +  ..    +.+.|+|||+|++-.
T Consensus       143 ~~pfD~Iiv~~a~~~i---p--~~----l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         143 KAPYDVIIVTAGAPKI---P--EP----LIEQLKIGGKLIIPV  176 (215)
T ss_dssp             GCCEEEEEECSBBSSC---C--HH----HHHTEEEEEEEEEEE
T ss_pred             cCcceeEEeecccccC---C--HH----HHHhcCCCCEEEEEE
Confidence             899999996553332   3  22    346789999998754

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=2.6e-10  Score=100.17  Aligned_cols=93  Identities=19%  Similarity=0.147  Sum_probs=70.2

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccC----CC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVE----LP  106 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~----~~  106 (252)
                      ..|++|||+|||+|  .+        ++.++. |+.+|+++|+                 .++.++++|+.++.    ..
T Consensus       144 ~~g~rVLDl~~gtG--~~--------s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~  212 (318)
T d1wxxa2         144 FRGERALDVFSYAG--GF--------ALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKE  212 (318)
T ss_dssp             CCEEEEEEETCTTT--HH--------HHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHT
T ss_pred             hCCCeeeccCCCCc--HH--------HHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhh
Confidence            46899999999999  66        666665 4578999999                 57899999987752    22


Q ss_pred             -CceeEEEecccccccCC------hhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773         107 -EKVDIIVSEWMGFYLLH------ESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus       107 -~~fDlIv~~~~~~~l~~------~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                       .+||+|++++-.+....      ......++..+.++|+|||+|+..+++.
T Consensus       213 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         213 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence             68999999664322211      1245578888899999999999987763

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.93  E-value=1e-09  Score=88.81  Aligned_cols=92  Identities=16%  Similarity=0.054  Sum_probs=71.8

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC--
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE--  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~--  104 (252)
                      .....|.+|||++||||  .+        ++.++++|+++|+++|.                  .++.++++|+..+-  
T Consensus        37 ~~~~~~~~vLDlfaGsG--~~--------g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~  106 (182)
T d2fhpa1          37 GPYFDGGMALDLYSGSG--GL--------AIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ  106 (182)
T ss_dssp             CSCCSSCEEEETTCTTC--HH--------HHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH
T ss_pred             HHhcCCCEEEEcccccc--cc--------cceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhh
Confidence            34568999999999999  88        88999999999999999                  57899999987652  


Q ss_pred             ---CCCceeEEEecccccccCChhhHHHHHHHH--hccccCCeEEEeeccc
Q psy9773         105 ---LPEKVDIIVSEWMGFYLLHESMIDSVIFAR--DKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ---~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l--~~~LkpgG~lv~~~~~  150 (252)
                         ...+||+|++++- +..   .....++..+  ..+|+|+|++++.+..
T Consensus       107 ~~~~~~~fDlIflDPP-Y~~---~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         107 FYEEKLQFDLVLLDPP-YAK---QEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHTTCCEEEEEECCC-GGG---CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hcccCCCcceEEechh-hhh---hHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence               1257999999774 222   3455566665  3589999999987654

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.91  E-value=4.5e-09  Score=88.77  Aligned_cols=91  Identities=16%  Similarity=0.168  Sum_probs=72.0

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------CceEEEEccccccCCCCceeEEEec
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------LILEVIQNKIENVELPEKVDIIVSE  115 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------~~i~~~~~d~~~~~~~~~fDlIv~~  115 (252)
                      .....+|||||||+|  .+        +..++++.+ .+++..|.          .++.++.+|+.+. .| ..|++++.
T Consensus        79 f~~~~~vlDiGGG~G--~~--------~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~-~p-~~D~~~l~  146 (244)
T d1fp1d2          79 FEGISTLVDVGGGSG--RN--------LELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFAS-VP-QGDAMILK  146 (244)
T ss_dssp             TTTCSEEEEETCTTS--HH--------HHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTC-CC-CEEEEEEE
T ss_pred             ccCCcEEEEecCCCc--HH--------HHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccc-cc-cceEEEEe
Confidence            345589999999999  55        555555433 57889998          7899999998753 33 46999999


Q ss_pred             ccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       116 ~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +++|.. ...+...+|+++++.|+|||++++....
T Consensus       147 ~vLh~~-~de~~~~iL~~~~~aL~pgg~llI~e~v  180 (244)
T d1fp1d2         147 AVCHNW-SDEKCIEFLSNCHKALSPNGKVIIVEFI  180 (244)
T ss_dssp             SSGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hhhhhC-CHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence            988876 4446889999999999999999988754

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.90  E-value=2.8e-09  Score=86.88  Aligned_cols=57  Identities=14%  Similarity=0.261  Sum_probs=43.1

Q ss_pred             eEEEEccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          93 LEVIQNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        93 i~~~~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.+...+......+  +.||+|+|.+++.++ +.+....++..+.+.|+|||+|++....
T Consensus       115 v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-~~~~~~~vl~~l~~~L~pGG~L~lG~sE  173 (193)
T d1af7a2         115 VEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAGHSE  173 (193)
T ss_dssp             EEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred             HHHhhhhccccccCCCCCccEEEeehhHHhc-CHHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence            34444555444322  789999999998876 4456789999999999999999987653

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.90  E-value=1.4e-09  Score=89.26  Aligned_cols=60  Identities=20%  Similarity=0.205  Sum_probs=52.5

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCCCceeEEE
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELPEKVDIIV  113 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~~~fDlIv  113 (252)
                      ....|++|||+|||||  .+        ++.++..|+.+|+|+|+            .++.++++|+..++  ++||+|+
T Consensus        45 ~dl~Gk~VLDlGcGtG--~l--------~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~--~~fD~Vi  112 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNG--IL--------ACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS--GKYDTWI  112 (197)
T ss_dssp             TSSBTSEEEEETCTTC--HH--------HHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC--CCEEEEE
T ss_pred             CCCCCCEEEEeCCCCc--HH--------HHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcC--CcceEEE
Confidence            5568999999999999  77        88888888889999999            67899999998764  7899999


Q ss_pred             eccc
Q psy9773         114 SEWM  117 (252)
Q Consensus       114 ~~~~  117 (252)
                      +++-
T Consensus       113 ~NPP  116 (197)
T d1ne2a_         113 MNPP  116 (197)
T ss_dssp             ECCC
T ss_pred             eCcc
Confidence            9765

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.87  E-value=3.6e-09  Score=88.26  Aligned_cols=84  Identities=15%  Similarity=0.074  Sum_probs=62.2

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc----CC---CcEEEeeC----------------------CceEEE
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV----HP---LDHYAPQY----------------------LILEVI   96 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~----g~---~~v~gvD~----------------------~~i~~~   96 (252)
                      .+.++.+|||+|||||  .+        +..+++.    |.   .+|+++|+                      .++.++
T Consensus        77 ~l~~g~~VLeIGtGsG--Y~--------ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~  146 (223)
T d1r18a_          77 HLKPGARILDVGSGSG--YL--------TACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  146 (223)
T ss_dssp             TCCTTCEEEEESCTTS--HH--------HHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             ccCCCCeEEEecCCCC--HH--------HHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence            5788999999999999  44        4444432    21   36999998                      478999


Q ss_pred             EccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773          97 QNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        97 ~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .+|......+ ++||+|++......+   +      ..+.+.|+|||+|++-.
T Consensus       147 ~~d~~~~~~~~~~fD~Iiv~~a~~~~---p------~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         147 EGDGRKGYPPNAPYNAIHVGAAAPDT---P------TELINQLASGGRLIVPV  190 (223)
T ss_dssp             ESCGGGCCGGGCSEEEEEECSCBSSC---C------HHHHHTEEEEEEEEEEE
T ss_pred             ecccccccccccceeeEEEEeechhc---h------HHHHHhcCCCcEEEEEE
Confidence            9999877555 789999996653333   3      23467899999998754

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.81  E-value=3.9e-09  Score=92.12  Aligned_cols=92  Identities=12%  Similarity=-0.008  Sum_probs=69.0

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccCC--
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVEL--  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~~--  105 (252)
                      ..++.+|||++||||  .+        ++.++..|+ +|++||.                   .+++|+++|+..+..  
T Consensus       130 ~~~~~rVLdlf~~tG--~~--------sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~  198 (309)
T d2igta1         130 ADRPLKVLNLFGYTG--VA--------SLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQRE  198 (309)
T ss_dssp             SSSCCEEEEETCTTC--HH--------HHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHH
T ss_pred             ccCCCeEEEecCCCc--HH--------HHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHH
Confidence            467889999999999  77        778888886 7999999                   368999999987632  


Q ss_pred             ---CCceeEEEecccccccCC-------hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 ---PEKVDIIVSEWMGFYLLH-------ESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 ---~~~fDlIv~~~~~~~l~~-------~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                         ...||+||+++-.+....       ..+...++..+.++|+|||.+++.++
T Consensus       199 ~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         199 ERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             HHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             hhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence               268999999664332111       12456677788899999997665543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.77  E-value=3.6e-09  Score=84.60  Aligned_cols=91  Identities=10%  Similarity=0.026  Sum_probs=60.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEcccccc-----C
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENV-----E  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~-----~  104 (252)
                      ....|.+|||+|||+|  .+        ++.++.+|+ +++++|.                ....+...+...+     .
T Consensus        38 ~~~~g~~vLDl~~G~G--~~--------~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~  106 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGSG--AV--------GLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKA  106 (171)
T ss_dssp             HCTTCCEEEEETCSSC--HH--------HHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHH
T ss_pred             cccCCCeEEEeccccc--hh--------hhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccc
Confidence            4578899999999999  77        778888886 6889999                1223444443322     1


Q ss_pred             CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ...+||+|++++- +.......+..++.  ..+|+|||++++.+..
T Consensus       107 ~~~~fD~If~DPP-Y~~~~~~~l~~l~~--~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         107 QGERFTVAFMAPP-YAMDLAALFGELLA--SGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             TTCCEEEEEECCC-TTSCTTHHHHHHHH--HTCEEEEEEEEEEEET
T ss_pred             cCCccceeEEccc-cccCHHHHHHHHHH--cCCcCCCeEEEEEecC
Confidence            1268999999774 22222222333332  3689999999987654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.76  E-value=2.3e-08  Score=81.85  Aligned_cols=62  Identities=21%  Similarity=0.243  Sum_probs=51.7

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCc
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~  108 (252)
                      .....|++|||+|||+|  .+        ++.++..|+.+|+|+|+                .+..++.+|+..++  .+
T Consensus        42 ~~dl~g~~vLDlg~GtG--~l--------~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~--~~  109 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTG--VL--------SYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN--SR  109 (201)
T ss_dssp             TTSSTTCEEEEETCTTC--HH--------HHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC--CC
T ss_pred             cCCCCCCEEEECcCcch--HH--------HHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhC--Cc
Confidence            55678899999999999  77        77778888888999999                56788888887764  67


Q ss_pred             eeEEEecccc
Q psy9773         109 VDIIVSEWMG  118 (252)
Q Consensus       109 fDlIv~~~~~  118 (252)
                      ||+|++++-.
T Consensus       110 fD~Vi~nPP~  119 (201)
T d1wy7a1         110 VDIVIMNPPF  119 (201)
T ss_dssp             CSEEEECCCC
T ss_pred             CcEEEEcCcc
Confidence            9999997753

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.73  E-value=5.5e-08  Score=79.20  Aligned_cols=111  Identities=14%  Similarity=-0.008  Sum_probs=73.1

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------CceEEEEccccccCCCCc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------LILEVIQNKIENVELPEK  108 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------~~i~~~~~d~~~~~~~~~  108 (252)
                      +.+.|.......++.+|||.|||+|..+.        +..-.......++|+|+        ....++++|.........
T Consensus         7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~--------~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (223)
T d2ih2a1           7 VVDFMVSLAEAPRGGRVLEPACAHGPFLR--------AFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEA   78 (223)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTCHHHH--------HHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSC
T ss_pred             HHHHHHHhcCCCCcCEEEECCCchHHHHH--------HHHHhccccceEEeeecCHHHHhhcccceeeeeehhccccccc
Confidence            34445555567788999999999994333        22212222356999999        345778888877766688


Q ss_pred             eeEEEecccccccCChh--------------------------hHHHHHHHHhccccCCeEEEeeccccccCC
Q psy9773         109 VDIIVSEWMGFYLLHES--------------------------MIDSVIFARDKFLKPEGVMYPYKCILHSAP  155 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~--------------------------~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~  155 (252)
                      ||+|++++.........                          -...++..+.++|+|||++.+..+..+...
T Consensus        79 fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~  151 (223)
T d2ih2a1          79 FDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVL  151 (223)
T ss_dssp             EEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTC
T ss_pred             cceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccC
Confidence            99999976532211000                          123556777899999999988877655433

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.68  E-value=1.4e-07  Score=79.21  Aligned_cols=90  Identities=19%  Similarity=0.248  Sum_probs=69.3

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------CceEEEEccccccCCCCceeEEEecc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------LILEVIQNKIENVELPEKVDIIVSEW  116 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------~~i~~~~~d~~~~~~~~~fDlIv~~~  116 (252)
                      ....+|||||||+|  .+        +..+++..+ .+++..|.          .++.++.+|+.+. .| ..|+++..+
T Consensus        80 ~~~~~vvDvGGG~G--~~--------~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~-~P-~ad~~~l~~  147 (243)
T d1kyza2          80 EGLKSLVDVGGGTG--AV--------INTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVS-IP-KADAVFMKW  147 (243)
T ss_dssp             SSCSEEEEETCTTS--HH--------HHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTC-CC-CCSCEECSS
T ss_pred             cCCcEEEEecCCCc--HH--------HHHHHHHCCCCeEEEcccHHhhhhcccCCceEEeccccccc-CC-CcceEEEEE
Confidence            33578999999999  66        566666433 58999999          7899999998663 33 356777767


Q ss_pred             cccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         117 MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       117 ~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ++|.. ...+...+|+++++.|+|||++++....
T Consensus       148 vlh~~-~d~~~~~iL~~~~~al~pgg~~li~d~~  180 (243)
T d1kyza2         148 ICHDW-SDEHCLKFLKNCYEALPDNGKVIVAECI  180 (243)
T ss_dssp             SSTTS-CHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred             EeecC-CHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence            76654 4457889999999999999999887654

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.65  E-value=2.5e-08  Score=80.36  Aligned_cols=89  Identities=17%  Similarity=0.147  Sum_probs=66.4

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccCC---
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVEL---  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~~---  105 (252)
                      ..+.+|||+.||||  .+        ++.++++|+.+|+.||.                   ....++..|+..+..   
T Consensus        42 ~~~~~vLDlFaGsG--~~--------glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~  111 (183)
T d2ifta1          42 IHQSECLDGFAGSG--SL--------GFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ  111 (183)
T ss_dssp             HTTCEEEETTCTTC--HH--------HHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC
T ss_pred             cccceEeecccCcc--ce--------eeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccc
Confidence            47789999999999  88        89999999999999999                   235566666544321   


Q ss_pred             -CCceeEEEecccccccCChhhHHHHHHHH--hccccCCeEEEeeccc
Q psy9773         106 -PEKVDIIVSEWMGFYLLHESMIDSVIFAR--DKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 -~~~fDlIv~~~~~~~l~~~~~~~~~l~~l--~~~LkpgG~lv~~~~~  150 (252)
                       ..+||+|++++- +..   .....++..+  ..+|+++|++++.+..
T Consensus       112 ~~~~fDlIFlDPP-Y~~---~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         112 NQPHFDVVFLDPP-FHF---NLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             SSCCEEEEEECCC-SSS---CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             cCCcccEEEechh-Hhh---hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence             157999999774 222   3355566655  3589999999998764

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.61  E-value=5.8e-08  Score=81.74  Aligned_cols=89  Identities=12%  Similarity=0.157  Sum_probs=69.8

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------CceEEEEccccccCCCCceeEEEeccc
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------LILEVIQNKIENVELPEKVDIIVSEWM  117 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------~~i~~~~~d~~~~~~~~~fDlIv~~~~  117 (252)
                      ...+|||||||+|  .+        +..+++..+ .+++..|.          .+++++.+|+.+..  ..+|++++.++
T Consensus        80 ~~~~vvDvGGG~G--~~--------~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~--p~aD~~~l~~v  147 (244)
T d1fp2a2          80 GLESIVDVGGGTG--TT--------AKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSI--PNADAVLLKYI  147 (244)
T ss_dssp             TCSEEEEETCTTS--HH--------HHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCC--CCCSEEEEESC
T ss_pred             CceEEEEecCCcc--HH--------HHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCC--CCCcEEEEEee
Confidence            3478999999999  65        555555433 57999998          89999999997642  35899999998


Q ss_pred             ccccCChhhHHHHHHHHhccccCC---eEEEeeccc
Q psy9773         118 GFYLLHESMIDSVIFARDKFLKPE---GVMYPYKCI  150 (252)
Q Consensus       118 ~~~l~~~~~~~~~l~~l~~~Lkpg---G~lv~~~~~  150 (252)
                      +|.. ...+...+|+++++.|+||   |++++....
T Consensus       148 LHdw-~d~~~~~iL~~~~~al~pgg~~~~lli~e~~  182 (244)
T d1fp2a2         148 LHNW-TDKDCLRILKKCKEAVTNDGKRGKVTIIDMV  182 (244)
T ss_dssp             GGGS-CHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             cccC-ChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence            8876 4446889999999999998   777776643

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1.6e-07  Score=77.14  Aligned_cols=86  Identities=20%  Similarity=0.285  Sum_probs=69.0

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEccccccCCCCce
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQNKIENVELPEKV  109 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~f  109 (252)
                      .++.+|||+|||.|  .-        ++.++-..+ .+++.+|.                 .++.+++..+.......+|
T Consensus        64 ~~~~~ilDiGsGaG--~P--------Gi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~f  133 (207)
T d1jsxa_          64 LQGERFIDVGTGPG--LP--------GIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPF  133 (207)
T ss_dssp             CCSSEEEEETCTTT--TT--------HHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCE
T ss_pred             hcCCceeeeeccCC--ce--------eeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcccccc
Confidence            45679999999999  55        555554333 68999999                 6899999999988666789


Q ss_pred             eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      |+|+|..+       ..+..++.-+.++++++|.+++.-+.
T Consensus       134 D~V~sRA~-------~~~~~ll~~~~~~l~~~g~~~~~KG~  167 (207)
T d1jsxa_         134 DGVISRAF-------ASLNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             EEEECSCS-------SSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             ceehhhhh-------cCHHHHHHHHHHhcCCCcEEEEECCC
Confidence            99988554       45678888889999999999987654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=7.4e-08  Score=78.34  Aligned_cols=96  Identities=16%  Similarity=0.095  Sum_probs=69.2

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccC-----
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVE-----  104 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~-----  104 (252)
                      ...++.++||++||+|+.+.        .+ +...+..+|+|+|.                .++.++++++.++.     
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~--------~i-l~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~   90 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSR--------AI-LEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   90 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHH--------HH-HHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             CCCCCCEEEEecCCCcHHHH--------HH-HhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence            46788999999999996654        22 22333468999999                57899999987763     


Q ss_pred             CC-CceeEEEecccccc--c----CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LP-EKVDIIVSEWMGFY--L----LHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~-~~fDlIv~~~~~~~--l----~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .. ++||.|+.......  +    .........|..+.++|+|||++++.+.+
T Consensus        91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~  143 (192)
T d1m6ya2          91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH  143 (192)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred             cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence            22 78999987532211  1    12235678889999999999999887654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.50  E-value=1.2e-07  Score=78.32  Aligned_cols=89  Identities=10%  Similarity=0.184  Sum_probs=61.5

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEccccccCC-
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENVEL-  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~~~-  105 (252)
                      ...+++||++|||+|..++          .+++. + ..+++++|+                  .+|+++.+|..++.. 
T Consensus        54 ~~kpk~ILEiGt~~G~Sti----------~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~  123 (214)
T d2cl5a1          54 EYSPSLVLELGAYCGYSAV----------RMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQ  123 (214)
T ss_dssp             HHCCSEEEEECCTTSHHHH----------HHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG
T ss_pred             hhCCCEEEEEccCchhHHH----------HHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccc
Confidence            3456899999999995554          44432 2 257999999                  579999999977521 


Q ss_pred             -----C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 -----P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 -----~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                           . ++||+|+.... +.   .......+....++|+|||++++...
T Consensus       124 l~~~~~~~~~D~ifiD~~-~~---~~~~~~~l~~~~~lLkpGGvIv~Ddv  169 (214)
T d2cl5a1         124 LKKKYDVDTLDMVFLDHW-KD---RYLPDTLLLEKCGLLRKGTVLLADNV  169 (214)
T ss_dssp             HHHHSCCCCEEEEEECSC-GG---GHHHHHHHHHHTTCEEEEEEEEESCC
T ss_pred             hhhcccccccceeeeccc-cc---ccccHHHHHHHhCccCCCcEEEEeCc
Confidence                 2 67999988532 11   11122345566799999999888764

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.49  E-value=1.1e-07  Score=81.31  Aligned_cols=108  Identities=16%  Similarity=0.042  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceE
Q psy9773          33 RNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILE   94 (252)
Q Consensus        33 ~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~   94 (252)
                      .+..+...+..........+|||+|||+|  .+        +..++..+..+|+++|+                  .++.
T Consensus        94 eTE~lv~~~~~~~~~~~~~~vld~g~GsG--~i--------~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~  163 (271)
T d1nv8a_          94 ETEELVELALELIRKYGIKTVADIGTGSG--AI--------GVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFF  163 (271)
T ss_dssp             THHHHHHHHHHHHHHHTCCEEEEESCTTS--HH--------HHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEE
T ss_pred             hhhhhhhhhhhhhccccccEEEEeeeeee--hh--------hhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeE
Confidence            34444444433222234568999999999  44        44555555568999999                  4677


Q ss_pred             EEEccccccCCC--CceeEEEecccc----ccc----CChhh--------HHHHHHH-HhccccCCeEEEeeccc
Q psy9773          95 VIQNKIENVELP--EKVDIIVSEWMG----FYL----LHESM--------IDSVIFA-RDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        95 ~~~~d~~~~~~~--~~fDlIv~~~~~----~~l----~~~~~--------~~~~l~~-l~~~LkpgG~lv~~~~~  150 (252)
                      +..+|+......  ++||+|||++-.    ..+    .+++.        ...++++ +.++|+|||++++....
T Consensus       164 i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~  238 (271)
T d1nv8a_         164 VRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  238 (271)
T ss_dssp             EEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             EeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH
Confidence            888888775433  789999996521    000    11111        0112222 46789999999998764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.4e-07  Score=78.26  Aligned_cols=98  Identities=15%  Similarity=0.125  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------Cce
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LIL   93 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i   93 (252)
                      ...+...+.   .....++||++|||+|..++          .++.. + ..+++++|.                  .++
T Consensus        47 ~g~lL~~L~---~~~~~k~vLEiGt~~GyStl----------~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i  113 (219)
T d2avda1          47 QAQLLANLA---RLIQAKKALDLGTFTGYSAL----------ALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKI  113 (219)
T ss_dssp             HHHHHHHHH---HHTTCCEEEEECCTTSHHHH----------HHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTE
T ss_pred             HHHHHHHHH---HccCCCeEEEEechhhHHHH----------HHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceE
Confidence            344444443   34667899999999996655          33331 1 247999998                  679


Q ss_pred             EEEEccccccC-------CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          94 EVIQNKIENVE-------LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        94 ~~~~~d~~~~~-------~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .++.+|+.+..       ..++||+|+...-      .......+..+.++|+|||++++...-
T Consensus       114 ~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~d------k~~y~~~~~~~~~lL~~GGvii~Dn~l  171 (219)
T d2avda1         114 DLRLKPALETLDELLAAGEAGTFDVAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVL  171 (219)
T ss_dssp             EEEESCHHHHHHHHHHTTCTTCEEEEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             EEEEeehhhcchhhhhhcccCCccEEEEeCC------HHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence            99999986542       1368999988431      234566778888999999999998754

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=4.7e-07  Score=72.65  Aligned_cols=95  Identities=15%  Similarity=0.177  Sum_probs=67.5

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC------CceEEEEccccccCC---------CC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY------LILEVIQNKIENVEL---------PE  107 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~------~~i~~~~~d~~~~~~---------~~  107 (252)
                      ....++.+||||||+.|  .+        +..+.. .+. ..++++|+      .++.++++|+.....         ..
T Consensus        18 ~l~k~~~~vlDLg~aPG--gw--------~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          18 KLFKPGMTVVDLGAAPG--GW--------SQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCCCTTCEEEEESCTTC--HH--------HHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CccCCCCeEEEEeccCC--cc--------eEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhhhccCc
Confidence            45678899999999999  65        555554 332 57999999      678899999976532         16


Q ss_pred             ceeEEEecccccccCChh--------hHHHHHHHHhccccCCeEEEeecc
Q psy9773         108 KVDIIVSEWMGFYLLHES--------MIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~--------~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ++|+|+|..+....-+..        -....+.-+.++|++||.|++-..
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F  137 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence            799999976543221111        133455556799999999998653

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.33  E-value=5.3e-07  Score=78.22  Aligned_cols=102  Identities=13%  Similarity=0.063  Sum_probs=67.0

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHH--HhhcC--CCcEEEeeC----------------CceEEEEccccccCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSF--CTKVH--PLDHYAPQY----------------LILEVIQNKIENVEL  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~--~a~~g--~~~v~gvD~----------------~~i~~~~~d~~~~~~  105 (252)
                      ....+.+|||.|||+|+..+        +..  +...+  ..+++|+|+                ....+.++|......
T Consensus       114 ~~~~~~~vlDp~~GsG~~l~--------~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~  185 (328)
T d2f8la1         114 QKKKNVSILDPACGTANLLT--------TVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLL  185 (328)
T ss_dssp             TTCSEEEEEETTCTTSHHHH--------HHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCC
T ss_pred             CCCCCCEEEeCCCCcchhHH--------HHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            45667899999999994433        211  11111  136899999                456677777766555


Q ss_pred             CCceeEEEecccccccCCh---------------hhHHHHHHHHhccccCCeEEEeeccccccCC
Q psy9773         106 PEKVDIIVSEWMGFYLLHE---------------SMIDSVIFARDKFLKPEGVMYPYKCILHSAP  155 (252)
Q Consensus       106 ~~~fDlIv~~~~~~~l~~~---------------~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~  155 (252)
                      ..+||+|++++-.......               .....++..+.++|+|||++++..+..+...
T Consensus       186 ~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~  250 (328)
T d2f8la1         186 VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGT  250 (328)
T ss_dssp             CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGS
T ss_pred             cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccC
Confidence            5889999997753221111               1233468888899999999988777654443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.29  E-value=2.7e-07  Score=78.97  Aligned_cols=94  Identities=11%  Similarity=-0.079  Sum_probs=67.4

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------------------CceEEEEcc
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------------------LILEVIQNK   99 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------------------~~i~~~~~d   99 (252)
                      ...+++||-+|+|.|  ..        +..+.+.+..+|+.+|+                           ++++++.+|
T Consensus        70 ~~~p~~vLiiG~G~G--~~--------~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~D  139 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDG--GT--------VREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGD  139 (276)
T ss_dssp             SSCCCEEEEEECTTS--HH--------HHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESC
T ss_pred             CCCCceEEEecCCch--HH--------HHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEECh
Confidence            356689999999999  54        44555666678999999                           367899999


Q ss_pred             ccccCC-CCceeEEEecccccccCC-hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         100 IENVEL-PEKVDIIVSEWMGFYLLH-ESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       100 ~~~~~~-~~~fDlIv~~~~~~~l~~-~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ...+-. .++||+|++......-.. .-.-..++..+++.|+|||++++...+
T Consensus       140 a~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         140 GFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             HHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence            876632 278999998554221110 001257899999999999999987654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.25  E-value=3.3e-06  Score=70.23  Aligned_cols=109  Identities=14%  Similarity=0.118  Sum_probs=72.6

Q ss_pred             HhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------Cce
Q psy9773          27 MLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------LIL   93 (252)
Q Consensus        27 ~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------~~i   93 (252)
                      +++.+.....|..++..    .++++||++|++.|++++      +++.++...+ ..+++++|+            .++
T Consensus        62 ~~k~p~d~~~~~eli~~----~KPk~ILEIGv~~GgS~~------~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I  131 (232)
T d2bm8a1          62 MLKDPDTQAVYHDMLWE----LRPRTIVELGVYNGGSLA------WFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENI  131 (232)
T ss_dssp             CCSCHHHHHHHHHHHHH----HCCSEEEEECCTTSHHHH------HHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTE
T ss_pred             cccCHHHHHHHHHHHHH----hCCCEEEEECCCCchHHH------HHHHHHHhcCCCceEEecCcChhhhhhhhccccce
Confidence            55666667777777753    456799999999997665      2223333333 357999998            789


Q ss_pred             EEEEccccccCCC-----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          94 EVIQNKIENVELP-----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        94 ~~~~~d~~~~~~~-----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +++++|..+...-     ..+|+|+.... |.  +...+.. + .+.++|+|||++++....
T Consensus       132 ~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H~--~~~v~~~-~-~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         132 TLHQGDCSDLTTFEHLREMAHPLIFIDNA-HA--NTFNIMK-W-AVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             EEEECCSSCSGGGGGGSSSCSSEEEEESS-CS--SHHHHHH-H-HHHHTCCTTCEEEECSCH
T ss_pred             eeeecccccHHHHHHHHhcCCCEEEEcCC-cc--hHHHHHH-H-HHhcccCcCCEEEEEcCC
Confidence            9999998765321     46888887542 22  2222332 2 345899999999998753

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.20  E-value=1e-06  Score=76.60  Aligned_cols=95  Identities=16%  Similarity=0.042  Sum_probs=68.1

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC----------------------CceEEEEccccccC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY----------------------LILEVIQNKIENVE  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~----------------------~~i~~~~~d~~~~~  104 (252)
                      ..+++||.||+|.|  ..        +..+.+. +..+|+++|+                      ++++++.+|+..+-
T Consensus        76 ~~pk~VLiiG~G~G--~~--------~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l  145 (312)
T d1uira_          76 PEPKRVLIVGGGEG--AT--------LREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYL  145 (312)
T ss_dssp             SCCCEEEEEECTTS--HH--------HHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHH
T ss_pred             CCcceEEEeCCCch--HH--------HHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHh
Confidence            45689999999999  55        4555554 3468999999                      57899999998873


Q ss_pred             --CCCceeEEEecccccccCC-h---hhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773         105 --LPEKVDIIVSEWMGFYLLH-E---SMIDSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       105 --~~~~fDlIv~~~~~~~l~~-~---~~~~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                        ...+||+|++.....+... .   ---..++..+++.|+|||+++....+.+
T Consensus       146 ~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~  199 (312)
T d1uira_         146 ERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMIL  199 (312)
T ss_dssp             HHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEEC
T ss_pred             hhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcc
Confidence              2378999998543211111 0   0125688999999999999998765433

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.19  E-value=5.9e-06  Score=68.80  Aligned_cols=69  Identities=14%  Similarity=0.144  Sum_probs=53.1

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEcccc
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIE  101 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~  101 (252)
                      ..+.+.......++.+||++|||+|  .+        +..++..+ ++|+++|+               .++.++++|+.
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G--~L--------T~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l   77 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKG--HF--------TLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDIL   77 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTS--HH--------HHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGG
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCch--HH--------HHHHHhCc-CceEEEeeccchHHHHHHHhhcccchhhhhhhhh
Confidence            3445566667789999999999999  77        77777775 67999999               67999999999


Q ss_pred             ccCCC-CceeEEEecc
Q psy9773         102 NVELP-EKVDIIVSEW  116 (252)
Q Consensus       102 ~~~~~-~~fDlIv~~~  116 (252)
                      .++++ .....|+++.
T Consensus        78 ~~~~~~~~~~~vv~NL   93 (235)
T d1qama_          78 QFKFPKNQSYKIFGNI   93 (235)
T ss_dssp             GCCCCSSCCCEEEEEC
T ss_pred             hccccccccceeeeee
Confidence            98876 3333455533

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.18  E-value=7.5e-07  Score=74.04  Aligned_cols=88  Identities=15%  Similarity=0.055  Sum_probs=65.6

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC------------------CceEEEEccccccCC-
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY------------------LILEVIQNKIENVEL-  105 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~-  105 (252)
                      ....++||++|+++|.+++          .+++ .+ ..+++.+|.                  ++++++.+++.+.-. 
T Consensus        57 ~~~~k~iLEiGT~~GyStl----------~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~  126 (227)
T d1susa1          57 LINAKNTMEIGVYTGYSLL----------ATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDE  126 (227)
T ss_dssp             HHTCCEEEEECCGGGHHHH----------HHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH
T ss_pred             hcCCCcEEEecchhhhhHH----------HHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHH
Confidence            4567899999999996655          3332 21 257999998                  679999999966521 


Q ss_pred             -------CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 -------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 -------~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                             .++||+|+...-      .......+..+.++|+|||++++...-
T Consensus       127 l~~~~~~~~~fD~iFiDa~------k~~y~~~~e~~~~ll~~gGiii~DNvl  172 (227)
T d1susa1         127 MIKDEKNHGSYDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDNTL  172 (227)
T ss_dssp             HHHCGGGTTCBSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred             HHhccccCCceeEEEeccc------hhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence                   268999988431      134667788888999999999998753

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.14  E-value=1.3e-06  Score=75.28  Aligned_cols=94  Identities=16%  Similarity=-0.002  Sum_probs=67.4

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccCC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVEL  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~~  105 (252)
                      ...++||-||.|.|  ..        +..+.+.. ..+|+++|+                     ++++++.+|...+-.
T Consensus        88 ~~pk~VLiiGgG~G--~~--------~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~  157 (295)
T d1inla_          88 PNPKKVLIIGGGDG--GT--------LREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR  157 (295)
T ss_dssp             SSCCEEEEEECTTC--HH--------HHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG
T ss_pred             CCCceEEEecCCch--HH--------HHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHh
Confidence            45689999999999  55        55565543 468999999                     688999999987743


Q ss_pred             --CCceeEEEecccccc-cC-ChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773         106 --PEKVDIIVSEWMGFY-LL-HESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus       106 --~~~fDlIv~~~~~~~-l~-~~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                        +++||+|++...... .+ ..---..++..+++.|+|||+++....+.
T Consensus       158 ~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         158 KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             cCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence              278999998543221 11 00123578899999999999999887653

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4e-06  Score=70.40  Aligned_cols=60  Identities=12%  Similarity=0.077  Sum_probs=42.3

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC----
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP----  106 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~----  106 (252)
                      ...+|||+|||+|++.+        ++ +.+.+..+++|+|+                  .++.+...+.....+.    
T Consensus        61 ~~~~~LDiGtGsg~I~~--------~l-~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~  131 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYP--------LL-GATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE  131 (250)
T ss_dssp             CCCEEEEESCTTTTHHH--------HH-HHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT
T ss_pred             ccceEEEeCCCchHHHH--------HH-HHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh
Confidence            44699999999996655        33 33333368999999                  5677877665544221    


Q ss_pred             ---CceeEEEeccc
Q psy9773         107 ---EKVDIIVSEWM  117 (252)
Q Consensus       107 ---~~fDlIv~~~~  117 (252)
                         ++||+|+|++-
T Consensus       132 ~~~~~fD~ivsNPP  145 (250)
T d2h00a1         132 ESEIIYDFCMCNPP  145 (250)
T ss_dssp             CCSCCBSEEEECCC
T ss_pred             cccCceeEEEecCc
Confidence               57999999774

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.12  E-value=2e-06  Score=72.13  Aligned_cols=69  Identities=23%  Similarity=0.321  Sum_probs=53.4

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCC
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVEL  105 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~  105 (252)
                      +.......++.+|||||||+|  .+        +..++..+ ++|+|+|+               .++.++++|+.++++
T Consensus        21 Iv~~~~~~~~d~VLEIGpG~G--~L--------T~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~   89 (245)
T d1yuba_          21 IIKQLNLKETDTVYEIGTGKG--HL--------TTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQF   89 (245)
T ss_dssp             HHHHCCCCSSEEEEECSCCCS--SC--------SHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTC
T ss_pred             HHHhcCCCCCCeEEEECCCcc--HH--------HHHHHhhc-CceeEeeecccchhhhhhhhhhccchhhhhhhhhcccc
Confidence            334356778899999999999  66        67777775 68999999               579999999999988


Q ss_pred             C-CceeEEEeccccccc
Q psy9773         106 P-EKVDIIVSEWMGFYL  121 (252)
Q Consensus       106 ~-~~fDlIv~~~~~~~l  121 (252)
                      + ..++.|+++. .+++
T Consensus        90 ~~~~~~~vv~NL-PY~I  105 (245)
T d1yuba_          90 PNKQRYKIVGNI-PYHL  105 (245)
T ss_dssp             CCSSEEEEEEEC-CSSS
T ss_pred             ccceeeeEeeee-ehhh
Confidence            7 5666677644 3444

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=1e-05  Score=70.69  Aligned_cols=94  Identities=14%  Similarity=0.027  Sum_probs=68.5

Q ss_pred             HHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEcccc
Q psy9773          39 AAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIE  101 (252)
Q Consensus        39 ~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~  101 (252)
                      +.+.......++.+|||+.||+|  ++        ++.+++.+ ++|+|+|.                 .++.|+.++..
T Consensus       202 ~~v~~~~~~~~~~~vlDLycG~G--~f--------sl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~  270 (358)
T d1uwva2         202 ARALEWLDVQPEDRVLDLFCGMG--NF--------TLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE  270 (358)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTT--TT--------HHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred             HHHHHhhccCCCceEEEeccccc--cc--------chhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecchh
Confidence            33333335667889999999999  88        88888764 78999999                 68899999987


Q ss_pred             ccCCC-----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         102 NVELP-----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       102 ~~~~~-----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .....     ..+|+||.++--..+      ..++..+.+ ++|.-++|+++..
T Consensus       271 ~~~~~~~~~~~~~d~vilDPPR~G~------~~~~~~l~~-~~~~~ivYVSCnp  317 (358)
T d1uwva2         271 EDVTKQPWAKNGFDKVLLDPARAGA------AGVMQQIIK-LEPIRIVYVSCNP  317 (358)
T ss_dssp             SCCSSSGGGTTCCSEEEECCCTTCC------HHHHHHHHH-HCCSEEEEEESCH
T ss_pred             hhhhhhhhhhccCceEEeCCCCccH------HHHHHHHHH-cCCCEEEEEeCCH
Confidence            65321     679999997753333      235555543 4788899998764

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.06  E-value=4.4e-06  Score=69.77  Aligned_cols=85  Identities=16%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCCC----
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVELP----  106 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~----  106 (252)
                      .+.+|+|+|+|.|  .-        ++.++- .+..+++.+|.                 .++.++++.+..+...    
T Consensus        70 ~~~~ilDiGSGaG--fP--------Gi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~  139 (239)
T d1xdza_          70 QVNTICDVGAGAG--FP--------SLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVR  139 (239)
T ss_dssp             GCCEEEEECSSSC--TT--------HHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTT
T ss_pred             CCCeEEeecCCCc--hH--------HHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccccccc
Confidence            5679999999999  55        455544 33468999999                 7888999888776432    


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+||+|+|.-+       ..+..++.-+..++++||.+++.-+.
T Consensus       140 ~~~D~v~sRAv-------a~l~~ll~~~~~~l~~~g~~i~~KG~  176 (239)
T d1xdza_         140 ESYDIVTARAV-------ARLSVLSELCLPLVKKNGLFVALKAA  176 (239)
T ss_dssp             TCEEEEEEECC-------SCHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred             ccceEEEEhhh-------hCHHHHHHHHhhhcccCCEEEEECCC
Confidence            68999998554       46778888899999999999987654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.05  E-value=2.9e-06  Score=72.33  Aligned_cols=93  Identities=15%  Similarity=-0.021  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------------CceEEEEccccccCC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------------LILEVIQNKIENVEL  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------------~~i~~~~~d~~~~~~  105 (252)
                      ..+++||-+|.|.|  ..        +..+.+. +..+++.+|+                     ++++++.+|...+-.
T Consensus        74 ~~p~~vLiiGgG~G--~~--------~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~  143 (274)
T d1iy9a_          74 PNPEHVLVVGGGDG--GV--------IREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA  143 (274)
T ss_dssp             SSCCEEEEESCTTC--HH--------HHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH
T ss_pred             CCcceEEecCCCCc--HH--------HHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHh
Confidence            45689999999999  55        5566654 4578999999                     689999999887632


Q ss_pred             --CCceeEEEecccccccCCh-hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 --PEKVDIIVSEWMGFYLLHE-SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 --~~~fDlIv~~~~~~~l~~~-~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                        ..+||+|++......-... ---..++..+++.|+|||+++....+
T Consensus       144 ~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         144 KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             hcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence              3789999995432111111 12447888899999999999987654

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.7e-06  Score=72.91  Aligned_cols=94  Identities=15%  Similarity=0.009  Sum_probs=66.8

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------------CceEEEEccccccC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------------LILEVIQNKIENVE  104 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------------~~i~~~~~d~~~~~  104 (252)
                      ...+++||-||.|.|  ..        +..+.+. +..+++.+|+                     ++++++.+|...+-
T Consensus        76 ~~~pk~vLiiGgG~G--~~--------~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l  145 (285)
T d2o07a1          76 HPNPRKVLIIGGGDG--GV--------LREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFM  145 (285)
T ss_dssp             SSSCCEEEEEECTTS--HH--------HHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH
T ss_pred             CcCcCeEEEeCCCch--HH--------HHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHH
Confidence            456689999999999  55        5566664 4578999988                     68999999988773


Q ss_pred             C--CCceeEEEecccccccC-ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 L--PEKVDIIVSEWMGFYLL-HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~--~~~fDlIv~~~~~~~l~-~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .  .++||+|++........ ..-.-..++..+++.|+|||++++...+
T Consensus       146 ~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         146 KQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             HTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            2  37899999954321111 1112336788899999999999987654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.96  E-value=3.5e-05  Score=64.31  Aligned_cols=98  Identities=11%  Similarity=0.100  Sum_probs=60.5

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------------CceEEEEcccccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------------LILEVIQNKIENV  103 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------------~~i~~~~~d~~~~  103 (252)
                      +.......++.+|+|||||.|  -+        +..++.... ..|.|+++                +-+.+...+.-..
T Consensus        58 ~~~~~~~~~~~~vvDlG~~pG--gw--------s~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~  127 (257)
T d2p41a1          58 FVERNLVTPEGKVVDLGCGRG--GW--------SYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF  127 (257)
T ss_dssp             HHHTTSSCCCEEEEEETCTTS--HH--------HHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT
T ss_pred             HHHhcCccCCCeEEEecCCCC--hH--------HHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHh
Confidence            333356778889999999999  77        778776532 35667666                1122222222112


Q ss_pred             CCCCceeEEEecccccccCChh----hHHHHHHHHhccccCCeEEEeecc
Q psy9773         104 ELPEKVDIIVSEWMGFYLLHES----MIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       104 ~~~~~fDlIv~~~~~~~l~~~~----~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ..+..+|+|+|+..-+ -.+..    ....+|.-+.++|+|||-|++-..
T Consensus       128 l~~~~~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl  176 (257)
T d2p41a1         128 IPPERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL  176 (257)
T ss_dssp             SCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             cCCCcCCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEEC
Confidence            2237899999976422 11111    233566677899999999887544

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.93  E-value=5.4e-06  Score=71.83  Aligned_cols=94  Identities=15%  Similarity=0.007  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccCC
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVEL  105 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~~  105 (252)
                      ..+++||-||.|.|  ..        +..+.+.. ..+|+.+|+                     ++++++.+|...+-.
T Consensus       105 ~~pk~VLIiGgG~G--~~--------~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~  174 (312)
T d2b2ca1         105 PDPKRVLIIGGGDG--GI--------LREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK  174 (312)
T ss_dssp             SSCCEEEEESCTTS--HH--------HHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH
T ss_pred             CCCCeEEEeCCCch--HH--------HHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHH
Confidence            45689999999999  55        55666643 368999999                     678899999887632


Q ss_pred             --CCceeEEEecccccccCC-hhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773         106 --PEKVDIIVSEWMGFYLLH-ESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus       106 --~~~fDlIv~~~~~~~l~~-~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                        ..+||+|++......... .---..++..+++.|+|||+++....+.
T Consensus       175 ~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         175 NHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             HCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             hCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence              378999999553221111 1123567889999999999999986553

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.93  E-value=2.1e-05  Score=67.34  Aligned_cols=94  Identities=14%  Similarity=0.037  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------------CceEEEEccccccC-
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------------LILEVIQNKIENVE-  104 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------------~~i~~~~~d~~~~~-  104 (252)
                      ...++||-||.|.|  ..        +..+.+. +..+++.+|+                     ++++++.+|....- 
T Consensus        79 ~~pk~VLiiGgG~G--~~--------~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~  148 (290)
T d1xj5a_          79 PNPKKVLVIGGGDG--GV--------LREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK  148 (290)
T ss_dssp             SCCCEEEEETCSSS--HH--------HHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH
T ss_pred             CCCcceEEecCCch--HH--------HHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHh
Confidence            45689999999999  55        5556665 3368999999                     78899999987663 


Q ss_pred             -CC-CceeEEEecccccccCC-hhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773         105 -LP-EKVDIIVSEWMGFYLLH-ESMIDSVIFARDKFLKPEGVMYPYKCIL  151 (252)
Q Consensus       105 -~~-~~fDlIv~~~~~~~l~~-~~~~~~~l~~l~~~LkpgG~lv~~~~~~  151 (252)
                       .+ ++||+|++......... .---..++..+++.|+|||+++....+.
T Consensus       149 ~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         149 NAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             TSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             hccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence             23 58999998543211111 1123568899999999999999987653

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.68  E-value=5.4e-05  Score=67.75  Aligned_cols=106  Identities=17%  Similarity=-0.006  Sum_probs=67.4

Q ss_pred             HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHH--HhhcC----------CCcEEEeeC--------------
Q psy9773          37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSF--CTKVH----------PLDHYAPQY--------------   90 (252)
Q Consensus        37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~--~a~~g----------~~~v~gvD~--------------   90 (252)
                      +.+.|.......++.+|+|.+||+|+.++        +..  +...+          ...++|+|+              
T Consensus       150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~--------~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l  221 (425)
T d2okca1         150 LIQAMVDCINPQMGETVCDPACGTGGFLL--------TAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  221 (425)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTCHHHH--------HHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             hhHhhheeccCcccceeeccccccCccHH--------HHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence            44444444455678899999999994443        111  00000          125889998              


Q ss_pred             -----CceEEEEccccccCCCCceeEEEecccccccCC--------------hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          91 -----LILEVIQNKIENVELPEKVDIIVSEWMGFYLLH--------------ESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        91 -----~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~l~~--------------~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                           ....+...|.........||+|++++-......              ...-..++..+.++|+|||++.+..+.
T Consensus       222 ~g~~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~  300 (425)
T d2okca1         222 HGIGTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  300 (425)
T ss_dssp             TTCCSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cCCccccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence                 234567777766554578999999775422111              112345888889999999999887774

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.49  E-value=0.00017  Score=62.08  Aligned_cols=98  Identities=15%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh--cCCCcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK--VHPLDHYAPQY-----------------LILEVIQNKIENVELP  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~--~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~  106 (252)
                      ...+|.+|||++||.|+=+.          .++.  .+...+++.|.                 .++.+...|...++..
T Consensus       113 ~~~~g~~vlD~CAapGgKt~----------~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~  182 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGKTS----------YLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL  182 (313)
T ss_dssp             CCCTTCEEEECCSSCSHHHH----------HHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG
T ss_pred             cCCccceeeecccchhhhhH----------hhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence            46789999999999995333          3322  22346999999                 5667777777666443


Q ss_pred             -CceeEEEecccc---cccC---------Chh-------hHHHHHHHHhccccCCeEEEeecccccc
Q psy9773         107 -EKVDIIVSEWMG---FYLL---------HES-------MIDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus       107 -~~fDlIv~~~~~---~~l~---------~~~-------~~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                       ..||.|++..-.   ..+.         ...       --..+|..+.++|+|||+++-++++++.
T Consensus       183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~  249 (313)
T d1ixka_         183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP  249 (313)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred             cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence             789999982211   1110         111       1345677888999999999988887543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00032  Score=59.40  Aligned_cols=98  Identities=13%  Similarity=0.041  Sum_probs=61.3

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEcccccc--CC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIENV--EL  105 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~--~~  105 (252)
                      ...+|.+|||++||.|+=          +..++..+ ...++++|+                 .++.+...|....  ..
T Consensus        99 ~~~~g~~vLD~CAaPGgK----------t~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~  168 (284)
T d1sqga2          99 APQNGEHILDLCAAPGGK----------TTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCG  168 (284)
T ss_dssp             CCCTTCEEEEESCTTCHH----------HHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHT
T ss_pred             CccccceeEeccCccccc----------hhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcc
Confidence            467889999999999953          33444332 257999999                 2333333332222  12


Q ss_pred             CCceeEEEecccc---cccCChh----------------hHHHHHHHHhccccCCeEEEeecccccc
Q psy9773         106 PEKVDIIVSEWMG---FYLLHES----------------MIDSVIFARDKFLKPEGVMYPYKCILHS  153 (252)
Q Consensus       106 ~~~fDlIv~~~~~---~~l~~~~----------------~~~~~l~~l~~~LkpgG~lv~~~~~~~~  153 (252)
                      ++.||.|++..-.   ..+...+                --..+|..+.++|+|||+|+-+++++..
T Consensus       169 ~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~  235 (284)
T d1sqga2         169 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP  235 (284)
T ss_dssp             TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred             cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence            3679999982211   1111111                1346788888999999999998887543

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.39  E-value=7e-05  Score=66.21  Aligned_cols=84  Identities=12%  Similarity=0.017  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC--------------------------------CceEE
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY--------------------------------LILEV   95 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~--------------------------------~~i~~   95 (252)
                      .+.+|||..||||  ..        ++..+. .|+.+|++.|+                                ..+.+
T Consensus        45 ~~~~vLD~~sasG--~r--------siRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~  114 (375)
T d2dula1          45 NPKIVLDALSATG--IR--------GIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVI  114 (375)
T ss_dssp             CCSEEEESSCTTS--HH--------HHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEE
T ss_pred             CCCEEEEcCCCcc--HH--------HHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEe
Confidence            5689999999999  77        775444 67778999999                                12445


Q ss_pred             EEccccccCC--CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          96 IQNKIENVEL--PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        96 ~~~d~~~~~~--~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .+.|+..+..  ...||+|...+.       ..+..+|..+.+.++.||+|.++..
T Consensus       115 ~~~Da~~~~~~~~~~fDvIDiDPf-------Gs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         115 NHDDANRLMAERHRYFHFIDLDPF-------GSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             EESCHHHHHHHSTTCEEEEEECCS-------SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ehhhhhhhhHhhcCcCCcccCCCC-------CCcHHHHHHHHHHhccCCEEEEEec
Confidence            5666554432  257999998763       2345578888888999999999864

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00032  Score=59.39  Aligned_cols=64  Identities=25%  Similarity=0.302  Sum_probs=49.4

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccc
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIEN  102 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~  102 (252)
                      +.......++..||++|+|+|  .+        +..+++.+ ++|+++++                  .++.++.+|+..
T Consensus        13 Iv~~~~~~~~d~VlEIGPG~G--~L--------T~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~   81 (278)
T d1zq9a1          13 IIDKAALRPTDVVLEVGPGTG--NM--------TVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   81 (278)
T ss_dssp             HHHHTCCCTTCEEEEECCTTS--TT--------HHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             HHHHhCCCCCCEEEEECCCch--HH--------HHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhh
Confidence            333356778899999999999  66        77777776 58999999                  478999999988


Q ss_pred             cCCCCceeEEEecc
Q psy9773         103 VELPEKVDIIVSEW  116 (252)
Q Consensus       103 ~~~~~~fDlIv~~~  116 (252)
                      ...+. +..||++.
T Consensus        82 ~~~~~-~~~vV~NL   94 (278)
T d1zq9a1          82 TDLPF-FDTCVANL   94 (278)
T ss_dssp             SCCCC-CSEEEEEC
T ss_pred             hhhhh-hhhhhcch
Confidence            87664 45666644

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.23  E-value=0.00025  Score=56.32  Aligned_cols=94  Identities=15%  Similarity=0.075  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCC-----C-
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVEL-----P-  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~-----~-  106 (252)
                      ...+|..++|..||.|+.+.          .+...+ .+|+|+|.             .++.+++++...+..     . 
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~----------~iL~~~-~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~   83 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHAR----------GILERG-GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV   83 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHH----------HHHHTT-CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred             CCCCCCEEEEeCCCCcHHHH----------HHhccc-CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCC
Confidence            46788999999999997654          333444 47999999             688999988877631     1 


Q ss_pred             CceeEEEecccccc--cCCh----hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFY--LLHE----SMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~--l~~~----~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      +.+|.|+.......  +.+.    ......|....++|+|||++++...+
T Consensus        84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh  133 (182)
T d1wg8a2          84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH  133 (182)
T ss_dssp             SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence            67999998442211  1111    13455777788999999999987754

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00017  Score=60.19  Aligned_cols=51  Identities=14%  Similarity=0.124  Sum_probs=42.2

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~~  106 (252)
                      ....++..||+||||+|  .+        +..+++.+ ++|+++|+               .++.++.+|+..++.+
T Consensus        17 ~~~~~~d~vlEIGpG~G--~L--------T~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~   82 (252)
T d1qyra_          17 INPQKGQAMVEIGPGLA--AL--------TEPVGERL-DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HCCCTTCCEEEECCTTT--TT--------HHHHHTTC-SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred             cCCCCCCEEEEECCCch--HH--------HHHHHccC-CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhccc
Confidence            35677899999999999  66        77777775 68999999               6789999999887553

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.002  Score=54.47  Aligned_cols=98  Identities=13%  Similarity=0.040  Sum_probs=61.5

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC--
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP--  106 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~--  106 (252)
                      ...+|.+|||++||.|+-+.        .+.....+...++++|+                 .++.+...|...+...  
T Consensus        91 ~~~~g~~vLD~cAapGgKt~--------~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~  162 (293)
T d2b9ea1          91 DPPPGSHVIDACAAPGNKTS--------HLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP  162 (293)
T ss_dssp             CCCTTCEEEESSCTTCHHHH--------HHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG
T ss_pred             CCCccceEEecccchhhHHH--------HHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccc
Confidence            45789999999999995433        22212123357999999                 6788888888776433  


Q ss_pred             --CceeEEEecccccc---c---C--------Ch---h---hH-HHHHHHHhccccCCeEEEeeccccc
Q psy9773         107 --EKVDIIVSEWMGFY---L---L--------HE---S---MI-DSVIFARDKFLKPEGVMYPYKCILH  152 (252)
Q Consensus       107 --~~fDlIv~~~~~~~---l---~--------~~---~---~~-~~~l~~l~~~LkpgG~lv~~~~~~~  152 (252)
                        +.||.|++..-...   +   +        ..   .   .. ..++..+. .|+|||+|+-+++++.
T Consensus       163 ~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~  230 (293)
T d2b9ea1         163 RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC  230 (293)
T ss_dssp             GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred             ccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence              67999999322110   0   0        00   0   11 23444444 4799999988877644

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=97.13  E-value=0.0011  Score=57.93  Aligned_cols=56  Identities=14%  Similarity=0.089  Sum_probs=43.5

Q ss_pred             EEEccccccCCC-CceeEEEecccccccCCh------------------------------hhHHHHHHHHhccccCCeE
Q psy9773          95 VIQNKIENVELP-EKVDIIVSEWMGFYLLHE------------------------------SMIDSVIFARDKFLKPEGV  143 (252)
Q Consensus        95 ~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~------------------------------~~~~~~l~~l~~~LkpgG~  143 (252)
                      -+.+.+..--+| ++.++++|++.+|++...                              .|+..+|+...+=|+|||+
T Consensus       125 gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~  204 (359)
T d1m6ex_         125 GVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGR  204 (359)
T ss_dssp             EEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCE
T ss_pred             ecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence            345666555566 899999998888887531                              1678899999999999999


Q ss_pred             EEeeccc
Q psy9773         144 MYPYKCI  150 (252)
Q Consensus       144 lv~~~~~  150 (252)
                      |++....
T Consensus       205 mvl~~~g  211 (359)
T d1m6ex_         205 MVLTILG  211 (359)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9987654

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00028  Score=64.65  Aligned_cols=44  Identities=11%  Similarity=-0.164  Sum_probs=30.1

Q ss_pred             CceeEEEecccccccC-----------ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         107 EKVDIIVSEWMGFYLL-----------HESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~-----------~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .+||+|++++-...-.           ....-..++..+.+.|+|||++.+..+.
T Consensus       255 ~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~  309 (524)
T d2ar0a1         255 PKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  309 (524)
T ss_dssp             CCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence            5799999977432111           1112335788888999999999887764

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.89  E-value=0.0008  Score=55.97  Aligned_cols=72  Identities=15%  Similarity=-0.041  Sum_probs=53.2

Q ss_pred             HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------------
Q psy9773          34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------------   90 (252)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------------   90 (252)
                      ...+.+++..  ....+.+|||+-||.|  .-        ++.++..|+ +|++++.                       
T Consensus        75 ~~~l~kA~gl--~~~~~~~VlD~TaGlG--~D--------a~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~  141 (250)
T d2oyra1          75 GEAVAKAVGI--KGDYLPDVVDATAGLG--RD--------AFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGG  141 (250)
T ss_dssp             GSHHHHHTTC--BTTBCCCEEETTCTTC--HH--------HHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHH
T ss_pred             hhHHHHHhcC--CCCCCCEEEECCCccc--HH--------HHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHH
Confidence            4455565531  1222348999999999  66        678888884 6999997                       


Q ss_pred             ---CceEEEEccccccCCC--CceeEEEecccc
Q psy9773          91 ---LILEVIQNKIENVELP--EKVDIIVSEWMG  118 (252)
Q Consensus        91 ---~~i~~~~~d~~~~~~~--~~fDlIv~~~~~  118 (252)
                         .+++++++|..++...  ..||+|+..+|.
T Consensus       142 ~~~~ri~li~~Ds~~~L~~~~~~~DvIYlDPMF  174 (250)
T d2oyra1         142 WLQERLQLIHASSLTALTDITPRPQVVYLDPMF  174 (250)
T ss_dssp             HHHHHEEEEESCHHHHSTTCSSCCSEEEECCCC
T ss_pred             HHhhhheeecCcHHHHHhccCCCCCEEEECCCC
Confidence               3789999998776433  679999999985

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.47  E-value=0.0058  Score=48.32  Aligned_cols=96  Identities=11%  Similarity=-0.070  Sum_probs=57.4

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEcccccc---------CC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENV---------EL  105 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~---------~~  105 (252)
                      ....+|.+||-+|||..+...        ...+...|+.+|+++|.          -...... +....         ..
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a--------~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~-~~~~~~~~~~i~~~t~   91 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAA--------AASARLLGAAVVIVGDLNPARLAHAKAQGFEIAD-LSLDTPLHEQIAALLG   91 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHH--------HHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEE-TTSSSCHHHHHHHHHS
T ss_pred             hCCCCCCEEEEECcCHHHHHH--------HHHHHhhcccceeeecccchhhHhhhhccccEEE-eCCCcCHHHHHHHHhC
Confidence            678999999999999743332        33333467778999999          1122221 11111         11


Q ss_pred             CCceeEEEecccc------cccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         106 PEKVDIIVSEWMG------FYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       106 ~~~fDlIv~~~~~------~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ...+|+++-....      +...........|..+.++++|||++++...
T Consensus        92 g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          92 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence            2468998852210      1110111234578888899999999987653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.78  E-value=0.04  Score=42.08  Aligned_cols=92  Identities=10%  Similarity=-0.049  Sum_probs=57.1

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccC-----
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVE-----  104 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~-----  104 (252)
                      +.+.....+|.+||=+|||.-+...        ..++...|+..++.+|.           ....++..+-.++.     
T Consensus        20 ~~~~~~~~~g~~VlI~G~G~iG~~~--------~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~   91 (174)
T d1f8fa2          20 CINALKVTPASSFVTWGAGAVGLSA--------LLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKE   91 (174)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHH--------HHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEeCCCHHHhhh--------hhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHH
Confidence            3444678899999999998654444        44455577777888887           22234432222211     


Q ss_pred             -CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         105 -LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       105 -~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                       .++.||+|+-...         -...+..+.++++|+|++++...
T Consensus        92 ~t~gg~D~vid~~G---------~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          92 ITDGGVNFALESTG---------SPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             HTTSCEEEEEECSC---------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             HcCCCCcEEEEcCC---------cHHHHHHHHhcccCceEEEEEee
Confidence             1256999975221         12345666789999999987643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.052  Score=41.13  Aligned_cols=89  Identities=15%  Similarity=0.040  Sum_probs=56.7

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------Cce-EEEEccccccC---------
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LIL-EVIQNKIENVE---------  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i-~~~~~d~~~~~---------  104 (252)
                      ....++.+||=+|||..+...        ...+...|+.+|+++|.          ... .++..+-.+..         
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~--------~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~   93 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVT--------LLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQ   93 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHH--------HHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEECCCccHHHH--------HHHHHHcCCceEEeccCCHHHHHHHHHhCCccccccccccccccccccccc
Confidence            457889999999998775555        55555578778999998          111 22222111110         


Q ss_pred             CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ....+|+|+-..     .+    ...+..+.+++++||++++....
T Consensus        94 ~g~g~Dvvid~~-----G~----~~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2          94 LGCKPEVTIECT-----GA----EASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             HTSCCSEEEECS-----CC----HHHHHHHHHHSCTTCEEEECSCC
T ss_pred             CCCCceEEEecc-----CC----chhHHHHHHHhcCCCEEEEEecC
Confidence            114689987622     11    23566677889999999987654

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=94.68  E-value=0.065  Score=44.09  Aligned_cols=55  Identities=18%  Similarity=0.155  Sum_probs=41.7

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCCC--CceeEEEec
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVELP--EKVDIIVSE  115 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~--~~fDlIv~~  115 (252)
                      .+||||-||.|+.          +.-+...|...+.++|+           ..-.++.+|+.++...  ..+|++++.
T Consensus         1 mk~~~lF~G~Gg~----------~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g   68 (324)
T d1dcta_           1 MNLISLFSGAGGL----------DLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGG   68 (324)
T ss_dssp             CEEEEESCSSCHH----------HHHHHHHTCEEEEEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred             CeEEEeCcCcCHH----------HHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeec
Confidence            3799999999944          44455567777789999           4456788999988654  679999983

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.37  E-value=0.012  Score=45.36  Aligned_cols=91  Identities=16%  Similarity=0.183  Sum_probs=53.6

Q ss_pred             HHHHhCCCCCCCCEEEEEcCCc-CchhhhhccCccchHHH-hhcCCCcEEEeeC-----------CceEEEEccccc---
Q psy9773          39 AAICDNPNIFAGKTVLDVGTGT-GKSILLQGHGVDHHSFC-TKVHPLDHYAPQY-----------LILEVIQNKIEN---  102 (252)
Q Consensus        39 ~~l~~~~~~~~~~~VLDlGcGt-G~~~ll~~~~v~~s~~~-a~~g~~~v~gvD~-----------~~i~~~~~d~~~---  102 (252)
                      .++.+.....+|.+||-+|||. |  .+        ...+ ...|+.+|+++|.           ..-.++...-.+   
T Consensus        18 ~al~~~~~~~~G~~VlV~GaG~iG--~~--------~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~   87 (182)
T d1vj0a2          18 HAFDEYPESFAGKTVVIQGAGPLG--LF--------GVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEE   87 (182)
T ss_dssp             HHHHTCSSCCBTCEEEEECCSHHH--HH--------HHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHH
T ss_pred             HHHHHHhCCCCCCEEEEECCCccc--hh--------heecccccccccccccccccccccccccccceEEEeccccchHH
Confidence            3454545678899999999874 3  33        3344 4467778999998           111222111111   


Q ss_pred             -------cCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         103 -------VELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       103 -------~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                             ......+|+|+-..     ...    ..+....++|+|||++++..
T Consensus        88 ~~~~i~~~~~~~g~Dvvid~v-----G~~----~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          88 RRKAIMDITHGRGADFILEAT-----GDS----RALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             HHHHHHHHTTTSCEEEEEECS-----SCT----THHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHhhCCCCceEEeecC-----Cch----hHHHHHHHHhcCCCEEEEEe
Confidence                   11124699997522     111    23455668889999997664

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.28  E-value=0.055  Score=41.10  Aligned_cols=87  Identities=15%  Similarity=0.086  Sum_probs=54.9

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEcccccc------CCCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENV------ELPE  107 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~------~~~~  107 (252)
                      ....+|.+||-+|||..+...        ...+...|+..++++|.           ....++..+-...      ....
T Consensus        28 ~~~~~g~~vli~GaG~vG~~~--------~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~   99 (172)
T d1h2ba2          28 RTLYPGAYVAIVGVGGLGHIA--------VQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGR   99 (172)
T ss_dssp             TTCCTTCEEEEECCSHHHHHH--------HHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTC
T ss_pred             hccCCCCEEEEeCCChHHHHH--------HHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCC
Confidence            356889999999998765444        44455578888999988           2223332221111      1114


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .+|+|+-...         -...+....++|+++|++++..
T Consensus       100 g~d~vid~~g---------~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         100 GVNVAMDFVG---------SQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             CEEEEEESSC---------CHHHHHHGGGGEEEEEEEEECC
T ss_pred             CceEEEEecC---------cchHHHHHHHHHhCCCEEEEEe
Confidence            6999876221         1234667779999999999765

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.28  E-value=0.026  Score=47.94  Aligned_cols=46  Identities=17%  Similarity=0.131  Sum_probs=36.8

Q ss_pred             CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC--------------CceEEEEcccccc
Q psy9773          48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY--------------LILEVIQNKIENV  103 (252)
Q Consensus        48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~--------------~~i~~~~~d~~~~  103 (252)
                      ..+..|||+|+|.|  .+        +..+... ++++|+++++              .++.++.+|+..+
T Consensus        42 ~~~~~VlEIGPG~G--~L--------T~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          42 PEELKVLDLYPGVG--IQ--------SAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW  102 (322)
T ss_dssp             TTTCEEEEESCTTC--HH--------HHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred             cCCCeEEEECCCCC--HH--------HHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhhc
Confidence            45789999999999  66        6666554 4578999999              6799999998754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.86  E-value=0.13  Score=39.19  Aligned_cols=42  Identities=12%  Similarity=0.021  Sum_probs=31.7

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      +.+.....+|.+||=+|||..+...        ...+...|+.+|+++|.
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a--------~~~ak~~G~~~Vi~~d~   60 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSA--------IVGCKAAGASRIIGVGT   60 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHH--------HHHHHHHTCSEEEEECS
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHH--------HHHHHHcCCceeeccCC
Confidence            3344678999999999998765444        44455578888999998

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=93.53  E-value=0.06  Score=44.77  Aligned_cols=89  Identities=16%  Similarity=0.085  Sum_probs=54.9

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCCC--CceeEEEe
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVELP--EKVDIIVS  114 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~~--~~fDlIv~  114 (252)
                      ...+.+||||-||.|  -+        +..+.+.|...+.++|+          +.-....+|+.++...  ..+|+|++
T Consensus         8 ~~~~lrv~~lFsG~G--g~--------~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~~~~Di~~~~~~~~~~~Dll~g   77 (327)
T d2c7pa1           8 QLTGLRFIDLFAGLG--GF--------RLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCA   77 (327)
T ss_dssp             TTTTCEEEEETCTTT--HH--------HHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEE
T ss_pred             cCCCCeEEEECcccc--HH--------HHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCCCcCchhcCchhhcceeeeeec
Confidence            446789999999999  55        55566677767788998          1112346888887554  57999998


Q ss_pred             cccccccC---------Chh-hHHHHHHHHhccccCCeEEE
Q psy9773         115 EWMGFYLL---------HES-MIDSVIFARDKFLKPEGVMY  145 (252)
Q Consensus       115 ~~~~~~l~---------~~~-~~~~~l~~l~~~LkpgG~lv  145 (252)
                      .+-...+.         +.. .+...+-++.+.++|.-+++
T Consensus        78 gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~~~~l  118 (327)
T d2c7pa1          78 GFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFM  118 (327)
T ss_dssp             ECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEE
T ss_pred             ccccchhhhhhhhcCCcccchhHHHHHHHHHhccCCcEEec
Confidence            33211111         111 23333344457778875554

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.32  E-value=0.23  Score=37.77  Aligned_cols=91  Identities=11%  Similarity=-0.019  Sum_probs=55.4

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------CceEEEEccccccC----
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------LILEVIQNKIENVE----  104 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------~~i~~~~~d~~~~~----  104 (252)
                      +.+.....+|.+||=+|||.-+ .+        +..+++ .|+..|+++|.           ....++...-.+..    
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iG-l~--------a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~   90 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVG-LS--------AIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDV   90 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHH-HH--------HHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHH
T ss_pred             HHHhhCCCCCCEEEEECCChHH-HH--------HHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhh
Confidence            3345678999999999998733 33        444444 78778999998           12223321111110    


Q ss_pred             ----CCCceeEEEecccccccCChhhHHHHHHHHhccccCC-eEEEeecc
Q psy9773         105 ----LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPE-GVMYPYKC  149 (252)
Q Consensus       105 ----~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~Lkpg-G~lv~~~~  149 (252)
                          ..+.+|+++-..        . ....+....+.|+|| |++++...
T Consensus        91 ~~~~~~~G~d~vie~~--------G-~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          91 ITELTAGGVDYSLDCA--------G-TAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             HHHHHTSCBSEEEESS--------C-CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HhhhhcCCCcEEEEec--------c-cchHHHHHHHHhhcCCeEEEecCC
Confidence                125689986521        1 123566667888996 99987654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.01  E-value=0.22  Score=37.91  Aligned_cols=93  Identities=12%  Similarity=0.005  Sum_probs=54.7

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEc-ccccc-----
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQN-KIENV-----  103 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~-d~~~~-----  103 (252)
                      +.+.....+|.+||=+|||..+...        ...+...|+.+|+++|.           .-..++.. +....     
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~a--------i~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~   92 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSV--------IMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVL   92 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHH--------HHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHH--------HHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHH
Confidence            4444668899999999998765444        44555577789999998           22223321 11110     


Q ss_pred             --CCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         104 --ELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       104 --~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                        .....+|+++-..        .....+...+..+++++|++++...
T Consensus        93 ~~~~g~G~d~vi~~~--------g~~~~~~~a~~~~~~~~G~~v~vG~  132 (176)
T d1d1ta2          93 SEMTGNNVGYTFEVI--------GHLETMIDALASCHMNYGTSVVVGV  132 (176)
T ss_dssp             HHHHTSCCCEEEECS--------CCHHHHHHHHTTSCTTTCEEEECSC
T ss_pred             HHhccccceEEEEeC--------CchHHHHHHHHHhhcCCeEEEEEEc
Confidence              1125688886522        1223334445555567688887653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.76  E-value=0.19  Score=37.64  Aligned_cols=88  Identities=10%  Similarity=-0.018  Sum_probs=51.9

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccC---------
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVE---------  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~---------  104 (252)
                      ....++.+||-+|||.-+...        ..++...|+ +|+++|.           ..-..+..+.....         
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~--------~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~   92 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVS--------VLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIR   92 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHH--------HHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcccccchhh--------HhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhh
Confidence            457899999999998543333        334444664 7999998           11112222211110         


Q ss_pred             --CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         105 --LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       105 --~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                        ....+|+|+-..     ..    ...+..+.++|+|+|++++....
T Consensus        93 ~~~g~g~D~vid~~-----g~----~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          93 SAIGDLPNVTIDCS-----GN----EKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             HHSSSCCSEEEECS-----CC----HHHHHHHHHHSCTTCEEEECSCC
T ss_pred             cccccCCceeeecC-----CC----hHHHHHHHHHHhcCCceEEEecC
Confidence              124589886522     11    23456666889999999987643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.45  E-value=0.11  Score=39.20  Aligned_cols=88  Identities=17%  Similarity=0.054  Sum_probs=50.5

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEc-ccccc--CCCCcee
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQN-KIENV--ELPEKVD  110 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~-d~~~~--~~~~~fD  110 (252)
                      ....+|.+||-+|||.-+...        ..++...|+ +|+++|.           .--.++.. +...+  ...+.+|
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a--------~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d   93 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMG--------TLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFD   93 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHH--------HHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEE
T ss_pred             hCcCCCCEEEEECCCCcchhH--------HHHhhhccc-cccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccc
Confidence            568899999999998432222        333334675 6999998           11122221 11111  1126799


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +|+.......   ..    .+....++|+|+|++++..
T Consensus        94 ~vi~~~~~~~---~~----~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          94 LIVVCASSLT---DI----DFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             EEEECCSCST---TC----CTTTGGGGEEEEEEEEECC
T ss_pred             eEEEEecCCc---cc----hHHHHHHHhhccceEEEec
Confidence            8876321111   11    1344578999999998864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.28  E-value=0.084  Score=40.38  Aligned_cols=85  Identities=16%  Similarity=0.188  Sum_probs=52.2

Q ss_pred             CCCCCCCEEEEEcCCc-CchhhhhccCccchHHHhh-cCCCcEEEeeC-----------CceEEEEcccccc-------C
Q psy9773          45 PNIFAGKTVLDVGTGT-GKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------LILEVIQNKIENV-------E  104 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGt-G~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------~~i~~~~~d~~~~-------~  104 (252)
                      ....+|.+||=+|||. |  ++        +..+++ .|+.+|+++|.           .-..++.-.-.++       .
T Consensus        23 a~~~~g~~VlI~GaG~vG--l~--------~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t   92 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVG--LM--------GIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLT   92 (174)
T ss_dssp             TTCCTTCCEEEECCSHHH--HH--------HHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHT
T ss_pred             hCCCCCCEEEEEcCCcch--hh--------hhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHh
Confidence            5788999999999986 4  44        444444 67778999998           1122222111111       1


Q ss_pred             CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ....+|+|+-...     ..    ..+....++|+|+|++++..
T Consensus        93 ~g~G~D~vid~~g-----~~----~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          93 NGKGVDRVIMAGG-----GS----ETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TTSCEEEEEECSS-----CT----THHHHHHHHEEEEEEEEECC
T ss_pred             hccCcceEEEccC-----CH----HHHHHHHHHHhcCCEEEEEe
Confidence            1135999876221     11    23455568889999998864

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.90  E-value=0.15  Score=38.33  Aligned_cols=89  Identities=17%  Similarity=0.116  Sum_probs=53.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEcccccc-------CCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENV-------ELP  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~-------~~~  106 (252)
                      ....++.+||=+||+.|.-.+       ....+...|..+|++++.           .--.++..+-.+.       ..+
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~-------~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~   95 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTM-------AVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITES   95 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHH-------HHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTT
T ss_pred             hCCCCCCEEEEEeccccceee-------eeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhc
Confidence            568899999999974331133       023344467778999988           1112333222221       112


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      ..||+|+....         -...+..+.+.|+|||++++...
T Consensus        96 ~~~d~vid~~g---------~~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2          96 KGVDAVIDLNN---------SEKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             SCEEEEEESCC---------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred             ccchhhhcccc---------cchHHHhhhhhcccCCEEEEecc
Confidence            56999976221         12345666799999999987753

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=91.39  E-value=0.33  Score=40.37  Aligned_cols=89  Identities=7%  Similarity=-0.093  Sum_probs=61.1

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccCC------
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVEL------  105 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~~------  105 (252)
                      ..|+.||||-=  +.        ...+...+..+++-+|.                   .+..++..|+.+...      
T Consensus        91 ~qvV~LGaGlD--Tr--------~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~  160 (297)
T d2uyoa1          91 RQFVILASGLD--SR--------AYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSA  160 (297)
T ss_dssp             CEEEEETCTTC--CH--------HHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHT
T ss_pred             CeEEEeCcccC--Ch--------hhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhc
Confidence            45666999988  55        44443222246777777                   455777888764311      


Q ss_pred             --C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         106 --P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       106 --~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                        . ...-++++..++.++.. .....+|..+..+..||+.|++....
T Consensus       161 g~d~~~ptl~i~EGvl~YL~~-~~~~~ll~~i~~~~~~GS~l~~d~~~  207 (297)
T d2uyoa1         161 GFDPSARTAWLAEGLLMYLPA-TAQDGLFTEIGGLSAVGSRIAVETSP  207 (297)
T ss_dssp             TCCTTSCEEEEECSCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCCCCCCEEEEEccccccCCH-HHHHHHHHHHHHhCCCCCEEEEEecc
Confidence              1 34677888887777644 47999999999999999999987643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.54  Score=35.17  Aligned_cols=87  Identities=16%  Similarity=0.139  Sum_probs=51.8

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------CceEEEEccccccC----
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------LILEVIQNKIENVE----  104 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------~~i~~~~~d~~~~~----  104 (252)
                      +.+.....+|.+||-.|++.|--.+        ...+++ .|+ +|++++.           .--.++  |..+..    
T Consensus        20 l~~~~~~~~g~~VlV~Ga~G~vG~~--------aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi--~~~~~~~~~~   88 (174)
T d1yb5a2          20 LIHSACVKAGESVLVHGASGGVGLA--------ACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVF--NHREVNYIDK   88 (174)
T ss_dssp             HHTTSCCCTTCEEEEETCSSHHHHH--------HHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEE--ETTSTTHHHH
T ss_pred             HHHHhCCCCCCEEEEEecccccccc--------ccccccccCc-ccccccccccccccccccCccccc--ccccccHHHH
Confidence            4444667899999999973331144        444444 565 5887765           111222  222221    


Q ss_pred             -----CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         105 -----LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       105 -----~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                           .+..+|+|+...        .  ...+....++|+|+|+++...
T Consensus        89 i~~~t~~~g~d~v~d~~--------g--~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          89 IKKYVGEKGIDIIIEML--------A--NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             HHHHHCTTCEEEEEESC--------H--HHHHHHHHHHEEEEEEEEECC
T ss_pred             hhhhhccCCceEEeecc--------c--HHHHHHHHhccCCCCEEEEEe
Confidence                 125699997622        1  134666678999999999763

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.25  Score=40.72  Aligned_cols=57  Identities=19%  Similarity=0.149  Sum_probs=40.3

Q ss_pred             CCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC------------CceEEEEccccccCCC----CceeE
Q psy9773          50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY------------LILEVIQNKIENVELP----EKVDI  111 (252)
Q Consensus        50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~------------~~i~~~~~d~~~~~~~----~~fDl  111 (252)
                      +.+|+||.||.|+.          +..+...|.  .-+.++|+            +...++.+|+.++...    ..+|+
T Consensus         2 p~kv~~lF~G~Gg~----------~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dl   71 (343)
T d1g55a_           2 PLRVLELYSGVGGM----------HHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHH----------HHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSE
T ss_pred             CCEEEEcCcCccHH----------HHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccE
Confidence            46899999999944          444444564  33678898            4567888899877543    46899


Q ss_pred             EEecc
Q psy9773         112 IVSEW  116 (252)
Q Consensus       112 Iv~~~  116 (252)
                      +++.+
T Consensus        72 l~ggp   76 (343)
T d1g55a_          72 ILMSP   76 (343)
T ss_dssp             EEECC
T ss_pred             EEeec
Confidence            99833

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.86  E-value=0.54  Score=34.98  Aligned_cols=90  Identities=11%  Similarity=-0.107  Sum_probs=52.4

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEcccc-cc-----
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIE-NV-----  103 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~-~~-----  103 (252)
                      +.+.....+|.+||=.|||..+...        ..++...|++.|+++|.           ..-.++...-. +.     
T Consensus        20 l~~~~~~~~G~tVlI~GaGGvG~~a--------iq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~   91 (176)
T d2fzwa2          20 AVNTAKLEPGSVCAVFGLGGVGLAV--------IMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVL   91 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHH--------HHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHH
T ss_pred             HHHhhCCCCCCEEEEecchhHHHHH--------HHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHH
Confidence            4444678999999999998433332        33444478788999987           22223321111 11     


Q ss_pred             --CCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773         104 --ELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY  147 (252)
Q Consensus       104 --~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~  147 (252)
                        ..++.+|+|+-...         ...++..+..++++||.+++.
T Consensus        92 ~~~~~~g~D~vid~~G---------~~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          92 IEMTDGGVDYSFECIG---------NVKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             HHHTTSCBSEEEECSC---------CHHHHHHHHHTBCTTTCEEEE
T ss_pred             HHHcCCCCcEeeecCC---------CHHHHHHHHHhhcCCceeEEE
Confidence              11256999976221         113456667888888766543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.62  E-value=0.87  Score=33.80  Aligned_cols=42  Identities=14%  Similarity=0.078  Sum_probs=33.0

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      +.+....+++.+||=+|||.++...        ...++..++..|+++|.
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~--------~~~~~~~g~~~Vi~~~~   61 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAA--------VMGCHSAGAKRIIAVDL   61 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHH--------HHHHHHTTCSEEEEECS
T ss_pred             HHHhhCCCCCCEEEEEecCCccchH--------HHHHHHHhhchheeecc
Confidence            4444678999999999999875555        55666677788999998

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=89.37  E-value=0.78  Score=34.00  Aligned_cols=83  Identities=11%  Similarity=0.036  Sum_probs=54.1

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEE--------EEcccccc-CCC---Cc
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEV--------IQNKIENV-ELP---EK  108 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~--------~~~d~~~~-~~~---~~  108 (252)
                      ++|-=+|+|..+..+        +..+++.| ..|+.+|.          .....        ........ ...   ..
T Consensus         2 k~iaIiGaG~~G~~~--------A~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~   72 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAF--------AAYLALKG-QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD   72 (184)
T ss_dssp             CEEEEECCSHHHHHH--------HHHHHHTT-CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT
T ss_pred             CEEEEECccHHHHHH--------HHHHHHCC-CEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcC
Confidence            578889999988888        88888887 57988887          01111        11110000 001   56


Q ss_pred             eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      +|+|+...      .......++..+...|+++..++...
T Consensus        73 aD~iii~v------~~~~~~~~~~~i~~~l~~~~~iv~~~  106 (184)
T d1bg6a2          73 ADVILIVV------PAIHHASIAANIASYISEGQLIILNP  106 (184)
T ss_dssp             CSEEEECS------CGGGHHHHHHHHGGGCCTTCEEEESS
T ss_pred             CCEEEEEE------chhHHHHHHHHhhhccCCCCEEEEeC
Confidence            89998722      23457789999999999998776543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=89.02  E-value=0.53  Score=35.56  Aligned_cols=89  Identities=12%  Similarity=0.003  Sum_probs=55.1

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------CceEEEEcccccc-----
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------LILEVIQNKIENV-----  103 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------~~i~~~~~d~~~~-----  103 (252)
                      +.+.....+|++||=.|+|.|.-..        ...+++ .| .+|+++..           ..-.++.-+-.++     
T Consensus        21 l~~~~~v~~G~~VlV~ga~ggvG~~--------aiqlak~~G-a~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~   91 (182)
T d1v3va2          21 LLEVCGVKGGETVLVSAAAGAVGSV--------VGQIAKLKG-CKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEAL   91 (182)
T ss_dssp             HHTTTCCCSSCEEEESSTTSHHHHH--------HHHHHHHTT-CEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHH
T ss_pred             HHHHhCCCCCCEEEEEeCCCchhHH--------HHHHHHccC-CEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHH
Confidence            4445678899999998987764344        455555 55 47998876           2122222221111     


Q ss_pred             --CCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         104 --ELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       104 --~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                        ..+..+|+|+-..        .  ...+..+.++|+|+|.++...
T Consensus        92 ~~~~~~Gvd~v~D~v--------G--~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          92 KKASPDGYDCYFDNV--------G--GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             HHHCTTCEEEEEESS--------C--HHHHHHHGGGEEEEEEEEECC
T ss_pred             HHhhcCCCceeEEec--------C--chhhhhhhhhccCCCeEEeec
Confidence              1125699986511        1  235677789999999999764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.88  E-value=0.98  Score=33.64  Aligned_cols=42  Identities=12%  Similarity=0.040  Sum_probs=32.7

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      +.+.....+|.+||=+|||.++...        ...++..++.+|+++|.
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~--------~~~~~~~g~~~Vi~~~~   61 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSV--------IMGCKAAGAARIIGVDI   61 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHH--------HHHHHHTTCSEEEEECS
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHH--------HHHHHHcCCceEEeecC
Confidence            4444678999999999998765555        56666677788999998

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.73  E-value=0.31  Score=36.25  Aligned_cols=85  Identities=13%  Similarity=0.054  Sum_probs=49.1

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccC------CCC
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVE------LPE  107 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~------~~~  107 (252)
                      ....+|.+||=+|||.=+...        ..++...| .+|+++|.           ....++...-.+..      ..+
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~--------~~~ak~~G-~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g   93 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVA--------VQYARAMG-LHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGG   93 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHH--------HHHHHHTT-CEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSS
T ss_pred             hCCCCCCEEEEeeccccHHHH--------HHHHHHcC-CccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcC
Confidence            457889999999997644333        34444466 57999998           11223322211110      013


Q ss_pred             ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      .+++|++...          ...+....++|+|+|++++..
T Consensus        94 ~~~~i~~~~~----------~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          94 AHGVLVTAVS----------NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             EEEEEECCSC----------HHHHHHHHTTEEEEEEEEECC
T ss_pred             Cccccccccc----------chHHHHHHHHhcCCcEEEEEE
Confidence            3445543221          134566679999999998764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.46  E-value=0.37  Score=35.59  Aligned_cols=85  Identities=9%  Similarity=0.017  Sum_probs=49.5

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCC--------C
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVEL--------P  106 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~--------~  106 (252)
                      ....++.+||=.|||+-+...        ...+...|+ +|++++.          .....+. +..+...        +
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a--------~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~-~~~~~~~~~~~~~~~~   92 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVA--------VQYAKAMGL-NVVAVDIGDEKLELAKELGADLVV-NPLKEDAAKFMKEKVG   92 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHH--------HHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEE-CTTTSCHHHHHHHHHS
T ss_pred             hCCCCCCEEEEeecccchhhh--------hHHHhcCCC-eEeccCCCHHHhhhhhhcCcceec-ccccchhhhhcccccC
Confidence            457889999999998875544        444444554 6999987          1122221 1111111        1


Q ss_pred             CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +.+|+|++ ..     .    ...+....++|+|+|++++...
T Consensus        93 ~~~~~v~~-~~-----~----~~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2          93 GVHAAVVT-AV-----S----KPAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             SEEEEEES-SC-----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCceEEee-cC-----C----HHHHHHHHHHhccCCceEeccc
Confidence            34555543 21     1    2345666788999999998643

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=87.22  E-value=0.25  Score=39.47  Aligned_cols=57  Identities=12%  Similarity=0.127  Sum_probs=39.4

Q ss_pred             EEEEcccccc--CCC-CceeEEEecccccc--------cCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773          94 EVIQNKIENV--ELP-EKVDIIVSEWMGFY--------LLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus        94 ~~~~~d~~~~--~~~-~~fDlIv~~~~~~~--------l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      .|+.+|..++  .++ +++|+|+.++-...        ..+...+...+..+.|+|+|+|.+++....
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~   73 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL   73 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCc
Confidence            3677888766  344 89999999664211        011234677888999999999999986543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.06  E-value=2.1  Score=29.04  Aligned_cols=60  Identities=12%  Similarity=0.045  Sum_probs=42.7

Q ss_pred             CCCCCEEEEEc-CCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCCCCceeEEEe
Q psy9773          47 IFAGKTVLDVG-TGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVELPEKVDIIVS  114 (252)
Q Consensus        47 ~~~~~~VLDlG-cGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~~~fDlIv~  114 (252)
                      ....++|.=+| ||+|...+        +.++...|. .|+|.|.           ..+.+..+.....-  ...|+||.
T Consensus         5 ~~~~~~ihfiGigG~GMs~L--------A~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i--~~~d~vV~   73 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGI--------AEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHAEEHI--EGASVVVV   73 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHH--------HHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCCGGGG--TTCSEEEE
T ss_pred             chhCCEEEEEEECHHHHHHH--------HHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCccccC--CCCCEEEE
Confidence            45567899998 78997777        888888984 7999998           45665554443321  45788888


Q ss_pred             ccc
Q psy9773         115 EWM  117 (252)
Q Consensus       115 ~~~  117 (252)
                      +..
T Consensus        74 S~A   76 (96)
T d1p3da1          74 SSA   76 (96)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            554

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=86.53  E-value=0.1  Score=40.15  Aligned_cols=86  Identities=9%  Similarity=0.060  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCCC-CceeEEEe
Q psy9773          49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVELP-EKVDIIVS  114 (252)
Q Consensus        49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~~-~~fDlIv~  114 (252)
                      ++.+|+=||+|.-+..-        ...+.+.| ..|+++|.             .++.+...+-..+... ...|+||+
T Consensus        31 ~pa~V~ViGaGvaG~~A--------~~~A~~lG-A~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEA--------AKMAVGLG-AQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             CCCEEEEECCSHHHHHH--------HHHHHHTT-CEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCcEEEEECCChHHHHH--------HHHHhhCC-CEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEE
Confidence            56899999999753222        23344466 46999999             4455554443333222 56999998


Q ss_pred             cccccccCChhhHHHHHHHHhccccCCeEEEe
Q psy9773         115 EWMGFYLLHESMIDSVIFARDKFLKPEGVMYP  146 (252)
Q Consensus       115 ~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~  146 (252)
                      .-.   ++..+.+.-+-+.+.+.+|||..++=
T Consensus       102 aal---ipG~~aP~lIt~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1         102 AVL---VPGRRAPILVPASLVEQMRTGSVIVD  130 (168)
T ss_dssp             CCC---CTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred             eee---cCCcccCeeecHHHHhhcCCCcEEEE
Confidence            443   44444444555667899999999983

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=86.52  E-value=0.27  Score=39.95  Aligned_cols=34  Identities=9%  Similarity=-0.011  Sum_probs=27.4

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      ...+|..|||.-||+|  +.        +..+...| ++.+|+|+
T Consensus       247 ~s~~gdiVlDpF~GSG--TT--------~~AA~~lg-R~~Ig~El  280 (320)
T d1booa_         247 LTEPDDLVVDIFGGSN--TT--------GLVAERES-RKWISFEM  280 (320)
T ss_dssp             HCCTTCEEEETTCTTC--HH--------HHHHHHTT-CEEEEEES
T ss_pred             cccCCCEEEecCCCCc--HH--------HHHHHHcC-CcEEEEeC
Confidence            3578999999999999  65        55555566 67999999

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=86.15  E-value=0.63  Score=34.58  Aligned_cols=86  Identities=17%  Similarity=0.045  Sum_probs=49.3

Q ss_pred             CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------CceEEEEccccccCCC--Ccee
Q psy9773          45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------LILEVIQNKIENVELP--EKVD  110 (252)
Q Consensus        45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~--~~fD  110 (252)
                      ....+|.+||=+|||.=+ .+        +..+++ .|+ ++++++.           ..-.++...-......  ..+|
T Consensus        26 ~~~~~G~~VlI~GaG~vG-~~--------a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D   95 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLG-HM--------GIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFD   95 (168)
T ss_dssp             TTCCTTCEEEEECCSHHH-HH--------HHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEE
T ss_pred             hCCCCCCEEEEeccchHH-HH--------HHHHhhcccc-cchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCc
Confidence            578899999999987532 33        344444 665 4667777           1112222111111111  5799


Q ss_pred             EEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      +++-...     ...    .+....++|+|+|++++...
T Consensus        96 ~vid~~g-----~~~----~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          96 FILNTVA-----APH----NLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             EEEECCS-----SCC----CHHHHHTTEEEEEEEEECCC
T ss_pred             eeeeeee-----cch----hHHHHHHHHhcCCEEEEecc
Confidence            9876221     111    23445689999999998753

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=85.89  E-value=1.3  Score=32.85  Aligned_cols=90  Identities=13%  Similarity=0.093  Sum_probs=53.0

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------CceEEEEcccccc-----
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------LILEVIQNKIENV-----  103 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------~~i~~~~~d~~~~-----  103 (252)
                      +.+.....+|.+||=.|+|.|.-.+        ...+++ .|+ +|++++.           ..-.++...-.++     
T Consensus        20 l~~~~~l~~g~~Vlv~ga~g~vG~~--------~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~   90 (179)
T d1qora2          20 LRKTYEIKPDEQFLFHAAAGGVGLI--------ACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLK   90 (179)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHH--------HHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEccccccchH--------HHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHH
Confidence            4444567899999999887753344        444444 564 6999988           2122332111111     


Q ss_pred             --CCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         104 --ELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       104 --~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                        ..+..+|+|+....      ..    .+....+.|+|+|++++...
T Consensus        91 ~~t~g~g~d~v~d~~g------~~----~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2          91 EITGGKKVRVVYDSVG------RD----TWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             HHTTTCCEEEEEECSC------GG----GHHHHHHTEEEEEEEEECCC
T ss_pred             HHhCCCCeEEEEeCcc------HH----HHHHHHHHHhcCCeeeeccc
Confidence              11257999876221      11    24555688899999876543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=85.20  E-value=0.38  Score=37.83  Aligned_cols=33  Identities=18%  Similarity=0.134  Sum_probs=26.8

Q ss_pred             CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      ..+|..|||.-||+|  +.        +..+.+.| ++.+|+|+
T Consensus       210 s~~gd~VlDpF~GSG--TT--------~~aa~~~~-R~~ig~El  242 (256)
T d1g60a_         210 SNPNDLVLDCFMGSG--TT--------AIVAKKLG-RNFIGCDM  242 (256)
T ss_dssp             CCTTCEEEESSCTTC--HH--------HHHHHHTT-CEEEEEES
T ss_pred             CCCCCEEEECCCCch--HH--------HHHHHHcC-CeEEEEeC
Confidence            578999999999999  65        55555565 67999987

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=85.14  E-value=0.85  Score=33.21  Aligned_cols=84  Identities=6%  Similarity=-0.049  Sum_probs=52.2

Q ss_pred             CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--CceE---EEEcccccc------CC-C--CceeEEEecc
Q psy9773          51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--LILE---VIQNKIENV------EL-P--EKVDIIVSEW  116 (252)
Q Consensus        51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--~~i~---~~~~d~~~~------~~-~--~~fDlIv~~~  116 (252)
                      .+|+=+|+|.-+..+        +..+++.| ..|+.++.  ....   ....+....      .. .  ..+|+|+...
T Consensus         1 MkI~IiGaG~iG~~~--------a~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGCGALGQLW--------LTALCKQG-HEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTL   71 (167)
T ss_dssp             CEEEEECCSHHHHHH--------HHHHHHTT-CEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECS
T ss_pred             CEEEEECcCHHHHHH--------HHHHHHCC-CceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEee
Confidence            478889999855566        66677776 46888877  1111   111111100      00 1  5789998722


Q ss_pred             cccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773         117 MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus       117 ~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                            ...+...++..+.+.+.++..++...+
T Consensus        72 ------ka~~~~~~~~~l~~~~~~~~~Iv~~qN   98 (167)
T d1ks9a2          72 ------KAWQVSDAVKSLASTLPVTTPILLIHN   98 (167)
T ss_dssp             ------CGGGHHHHHHHHHTTSCTTSCEEEECS
T ss_pred             ------cccchHHHHHhhccccCcccEEeeccC
Confidence                  223677889999999999988876544

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.39  E-value=0.37  Score=38.40  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=27.6

Q ss_pred             CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773          46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY   90 (252)
Q Consensus        46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~   90 (252)
                      ...+|..|||.-||+|  +-        +..+...| ++.+|+|+
T Consensus       204 ~s~~gdiVLDpF~GSG--TT--------~~Aa~~lg-R~~ig~El  237 (279)
T d1eg2a_         204 LSHPGSTVLDFFAGSG--VT--------ARVAIQEG-RNSICTDA  237 (279)
T ss_dssp             HSCTTCEEEETTCTTC--HH--------HHHHHHHT-CEEEEEES
T ss_pred             hcCCCCEEEecCCCCc--HH--------HHHHHHhC-CeEEEEeC
Confidence            3578999999999999  65        55566666 68999999

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.32  E-value=1.3  Score=33.46  Aligned_cols=91  Identities=11%  Similarity=-0.088  Sum_probs=53.2

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------CceEEEE--cccccc---
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------LILEVIQ--NKIENV---  103 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------~~i~~~~--~d~~~~---  103 (252)
                      +.......+|.+||=-|++.|.-++        +..+++ .|+ +|+++--           ..-.++.  .+....   
T Consensus        23 L~~~g~~~~g~~VLI~gaaGGVG~~--------aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~   93 (176)
T d1xa0a2          23 LEEHGLTPERGPVLVTGATGGVGSL--------AVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRP   93 (176)
T ss_dssp             HHHTTCCGGGCCEEESSTTSHHHHH--------HHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSEEEECC---------
T ss_pred             HHHhCCCCCCCEEEEEeccchHHHH--------HHHHHHHcCC-ceEEecCchHHHHHHHhcccceeeecchhHHHHHHH
Confidence            4445667788999999987775566        666665 554 5777654           1111111  111111   


Q ss_pred             CCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773         104 ELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI  150 (252)
Q Consensus       104 ~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~  150 (252)
                      ..++.+|+|+-...     .     ..+....+.|+|||+++.....
T Consensus        94 ~~~~gvD~vid~vg-----g-----~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          94 LDKQRWAAAVDPVG-----G-----RTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             CCSCCEEEEEECST-----T-----TTHHHHHHTEEEEEEEEECSCC
T ss_pred             hhccCcCEEEEcCC-----c-----hhHHHHHHHhCCCceEEEeecc
Confidence            11267999865221     1     1255567899999999977654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.00  E-value=1.3  Score=32.87  Aligned_cols=89  Identities=16%  Similarity=0.168  Sum_probs=49.3

Q ss_pred             HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------CceEEEEcccccc-----
Q psy9773          41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------LILEVIQNKIENV-----  103 (252)
Q Consensus        41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------~~i~~~~~d~~~~-----  103 (252)
                      +.+.....+|.+||=.|+.+|--.+        ...+++ .|+ +++++..           ..-.++...-.++     
T Consensus        17 l~~~~~~~~g~~VlI~ga~g~vG~~--------~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~   87 (183)
T d1pqwa_          17 LCEVGRLSPGERVLIHSATGGVGMA--------AVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEIL   87 (183)
T ss_dssp             HHTTSCCCTTCEEEETTTTSHHHHH--------HHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCCCcccc--------cchhhccccc-cceeeecccccccccccccccccccCCccCHHHHHH
Confidence            4455678899999998853331133        334444 564 5666654           1112222111111     


Q ss_pred             --CCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773         104 --ELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus       104 --~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                        ..+..||+|+....     .     ..+..+.++|+|+|+++...
T Consensus        88 ~~t~~~g~d~v~d~~g-----~-----~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          88 ELTDGYGVDVVLNSLA-----G-----EAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             HHTTTCCEEEEEECCC-----T-----HHHHHHHHTEEEEEEEEECS
T ss_pred             HHhCCCCEEEEEeccc-----c-----hHHHHHHHHhcCCCEEEEEc
Confidence              11256999987221     1     23455668899999999764

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=81.91  E-value=4.9  Score=32.07  Aligned_cols=58  Identities=9%  Similarity=0.023  Sum_probs=36.7

Q ss_pred             CceEEEEccccccCC------CCceeEEEecccc-cccCCh-----hhHHHHHHHHhccccCCeEEEeec
Q psy9773          91 LILEVIQNKIENVEL------PEKVDIIVSEWMG-FYLLHE-----SMIDSVIFARDKFLKPEGVMYPYK  148 (252)
Q Consensus        91 ~~i~~~~~d~~~~~~------~~~fDlIv~~~~~-~~l~~~-----~~~~~~l~~l~~~LkpgG~lv~~~  148 (252)
                      ..|.+.+.|+.+...      +..+++||+++-. ..+...     ..+..++..+.+.|.....++++.
T Consensus       144 ~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~~it~  213 (249)
T d1o9ga_         144 LPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTD  213 (249)
T ss_dssp             CCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEEEEeC
Confidence            467888888866532      2567999996532 333211     246677777888886666666654

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.99  E-value=1.4  Score=36.97  Aligned_cols=57  Identities=14%  Similarity=0.162  Sum_probs=38.6

Q ss_pred             CceEEEEccccccCC---------C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773          91 LILEVIQNKIENVEL---------P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC  149 (252)
Q Consensus        91 ~~i~~~~~d~~~~~~---------~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~  149 (252)
                      .+..++.+|+.+...         . ...-++++..++.++... ....+|..+.+.. |+|.+++..+
T Consensus       166 ~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~-~~~~li~~~~~~f-~~~~~i~YE~  232 (328)
T d1rjda_         166 GRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNN-ESQLLINTIMSKF-SHGLWISYDP  232 (328)
T ss_dssp             SSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH-HHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred             CCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHH-HHHHHHHHHHHhC-CCceEEEecc
Confidence            356788888876521         1 446789998888887444 6778888887665 5566665443