Psyllid ID: psy9775

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MRIATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSESTDMSSLSSNQMSFR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEEcccccEEEcccccEEEEEccEEEEEEEEEEcccccEEEEEEEEccccccEEEEEEccccHHHHHHHcccccccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccEEEEccHHHccccccccccEEEEEcccccEEEEcccccEEEEcccEEEEEEEEEEEccccEEEEEEEEccccccEEEEEccHHHHHHHHHHHccccccccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mriatgasMVEHVTKQeiefdtpfrelgfpgapyrstvllqptsgclvnltewppfvislEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVkewlkphshgssestdmsslssnqmsfr
Flexible Loop (DISEMBL)
mriatgasmvehvtkqeiefdtpFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHshgssestdmsslssnqmsfr
Low Complexity Region (SEG)
MRIATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGssestdmsslssNQMSFR
Disordered region (IsUnstruct)
***************QEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL************************
Disordered Region (DISOPRED)
MRIATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSESTDMSSLSSNQMSF*
Disordered Region (DISEMBL)
MRIATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKP**********************
Disordered Region (DISPRO)
*RIATGASMV**VTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSESTDMSSLSSN*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRIATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSESTDMSSLSSNQMSFR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q8IRG6	1083	FACT complex subunit spt1	yes	N/A	0.751	0.092	0.82	6e-47
Q9Y5B9	1047	FACT complex subunit SPT1	yes	N/A	0.751	0.095	0.72	3e-40
Q920B9	1047	FACT complex subunit SPT1	yes	N/A	0.751	0.095	0.72	3e-40
Q9W603	1035	FACT complex subunit SPT1	N/A	N/A	0.751	0.096	0.72	8e-40
Q61E63	1034	FACT complex subunit spt-	N/A	N/A	0.751	0.096	0.61	3e-34
Q9N5R9	1030	FACT complex subunit spt-	yes	N/A	0.751	0.097	0.61	2e-33
Q6C931	1003	FACT complex subunit SPT1	yes	N/A	0.796	0.105	0.536	2e-30
O94267	1019	FACT complex subunit spt1	yes	N/A	0.774	0.101	0.563	3e-30
Q6BXE5	1033	FACT complex subunit SPT1	yes	N/A	0.774	0.099	0.524	3e-29
Q5A1D5	1060	FACT complex subunit SPT1	N/A	N/A	0.774	0.097	0.524	4e-28

>sp|Q8IRG6|SPT16_DROME FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1 SV=2

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 82/100 (82%), Positives = 93/100 (93%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           VE +TK  +EFDTPFRELGFPGAP+RSTV LQPTSG LVNLTEWPPFVI+L+DVELVHFE
Sbjct: 793 VETMTKSVVEFDTPFRELGFPGAPFRSTVTLQPTSGSLVNLTEWPPFVITLDDVELVHFE 852

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RVQF L+NFDM+FVFK+Y++KV M+NAIPMNMLDHVKEWL
Sbjct: 853 RVQFHLRNFDMIFVFKEYNKKVAMVNAIPMNMLDHVKEWL 892

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. The FACT complex is required for expression of Hox genes.
Drosophila melanogaster (taxid: 7227)

>sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1

 Score =  163 bits (412), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/100 (72%), Positives = 86/100 (86%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           VE +TK+E+EF+ PFR+LGF GAPYRST LLQPTS  LVN TEWPPFV++L++VEL+HFE
Sbjct: 787 VEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFE 846

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RVQF LKNFDMV V+KDY +KV MINAIP+  LD +KEWL
Sbjct: 847 RVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWL 886

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. The FACT complex is probably also involved in phosphorylation of 'Ser-392' of p53/TP53 via its association with CK2 (casein kinase II). Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene.

Homo sapiens (taxid: 9606)

>sp|Q920B9|SP16H_MOUSE FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2

 Score =  163 bits (412), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/100 (72%), Positives = 86/100 (86%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           VE +TK+E+EF+ PFR+LGF GAPYRST LLQPTS  LVN TEWPPFV++L++VEL+HFE
Sbjct: 787 VEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFE 846

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RVQF LKNFDMV V+KDY +KV MINAIP+  LD +KEWL
Sbjct: 847 RVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWL 886

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. The FACT complex is probably also involved in phosphorylation of 'Ser-392' of p53/TP53 via its association with CK2 (casein kinase II). Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene.

Mus musculus (taxid: 10090)

>sp|Q9W603|SP16H_XENLA FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2

 Score =  162 bits (409), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 72/100 (72%), Positives = 86/100 (86%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           VE +TK+++EF+ PFR+LGF GAPYRST LLQPTS  LVN TEWPPFV++L++VELVHFE
Sbjct: 789 VESLTKEDLEFEIPFRDLGFNGAPYRSTCLLQPTSSSLVNTTEWPPFVVTLDEVELVHFE 848

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RVQF LKNFDMV V+K+Y +KV MINAIPM  LD +KEWL
Sbjct: 849 RVQFHLKNFDMVIVYKEYGKKVTMINAIPMASLDPIKEWL 888

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR).

Xenopus laevis (taxid: 8355)

>sp|Q61E63|SPT16_CAEBR FACT complex subunit spt-16 OS=Caenorhabditis briggsae GN=spt-16 PE=3 SV=1

 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 76/100 (76%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           V  +T  + EFD+PF  LGF G P+RS   L+PT+ CLVNLTEWPPF+++L +VELVHFE
Sbjct: 786 VSRLTNDQFEFDSPFAGLGFFGVPFRSATTLKPTASCLVNLTEWPPFIVTLSEVELVHFE 845

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RV  QLKNFDMVF+FKDY  K  M+  IPM+ +D +KEWL
Sbjct: 846 RVSLQLKNFDMVFIFKDYKMKTQMVAQIPMSSIDKIKEWL 885

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9N5R9|SPT16_CAEEL FACT complex subunit spt-16 OS=Caenorhabditis elegans GN=spt-16 PE=3 SV=1

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 75/100 (75%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           V  +T  + EFD+PF  LGF G PYRS   L+PT+ CLVNLTEWP F+++L +VELVHFE
Sbjct: 787 VSRLTNDQFEFDSPFAGLGFFGVPYRSATTLKPTASCLVNLTEWPTFIVTLSEVELVHFE 846

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RV  QLKNFDMVF+FKDY  K  M+  IPM+ +D +KEWL
Sbjct: 847 RVSLQLKNFDMVFIFKDYKIKPQMVAQIPMSSIDKIKEWL 886

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.

Caenorhabditis elegans (taxid: 6239)

>sp|Q6C931|SPT16_YARLI FACT complex subunit SPT16 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SPT16 PE=3 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/110 (53%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           +   + ++++ DTPFRELGF G P+RS VLLQP++ CLV L + P  VI+L ++EL H E
Sbjct: 793 ISEASDRKVDVDTPFRELGFHGVPFRSNVLLQPSADCLVQLIDTPFSVITLGEIELAHLE 852

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLK----PHSHG 115
           RVQF LKNFD+VFV+KD++R V  IN+IP++ LD VK+WL     P+S G
Sbjct: 853 RVQFGLKNFDLVFVYKDFNRPVTHINSIPVDQLDAVKDWLNEVEIPYSEG 902

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|O94267|SPT16_SCHPO FACT complex subunit spt16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt16 PE=1 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 74/103 (71%)

Query: 7   ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELV 66
           A  +   ++  IE D PFREL F G P+RS VLLQPT+ CLV LT+ P  VI+L ++E+ 
Sbjct: 791 AEKIAEASEGRIELDIPFRELAFNGVPFRSNVLLQPTTDCLVQLTDTPFTVITLNEIEIA 850

Query: 67  HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           H ERVQF LKNFD+VF+F+D+ R  + IN IPM  LD+VKEWL
Sbjct: 851 HLERVQFGLKNFDLVFIFQDFRRPPIHINTIPMEQLDNVKEWL 893

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6BXE5|SPT16_DEBHA FACT complex subunit SPT16 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SPT16 PE=3 SV=2

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 74/103 (71%)

Query: 7   ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELV 66
           A ++   +   ++ D PFRELGF G P+RS+VL  PT  CL+ L + P  V++LE++E+ 
Sbjct: 812 AELISDSSSGMVDLDIPFRELGFSGVPFRSSVLCMPTRDCLIQLIDPPYLVVTLEEIEIA 871

Query: 67  HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           H ERVQF LKNFD+VFVFKD+++ VV IN IPM +L+ VK WL
Sbjct: 872 HLERVQFGLKNFDLVFVFKDFNKSVVHINTIPMELLEDVKSWL 914

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q5A1D5|SPT16_CANAL FACT complex subunit SPT16 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SPT16 PE=3 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 74/103 (71%)

Query: 7   ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELV 66
           A ++   +   ++ D PFRELGF G P+RS+VL  PT  CLV L + P  V++LE++E+ 
Sbjct: 833 AELIADSSHGMVDLDIPFRELGFQGVPFRSSVLCVPTRDCLVQLIDPPYLVVTLEEIEIA 892

Query: 67  HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           H ERVQF LKNFD+VFVFKD+++ VV IN IP+ +L+ VK WL
Sbjct: 893 HLERVQFGLKNFDLVFVFKDFNKPVVHINTIPVELLEDVKSWL 935

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
332025790	1162	FACT complex subunit spt16 [Acromyrmex e	0.751	0.086	0.91	2e-51
328790396	1134	PREDICTED: FACT complex subunit spt16 [A	0.751	0.088	0.92	3e-51
383855266	1138	PREDICTED: FACT complex subunit spt16-li	0.751	0.087	0.92	3e-51
380019514	1141	PREDICTED: LOW QUALITY PROTEIN: FACT com	0.751	0.087	0.92	3e-51
307199152	1067	FACT complex subunit spt16 [Harpegnathos	0.751	0.093	0.91	4e-51
350417944	1131	PREDICTED: FACT complex subunit spt16-li	0.751	0.088	0.91	5e-51
340715630	1134	PREDICTED: FACT complex subunit spt16-li	0.751	0.088	0.91	6e-51
91082911	1112	PREDICTED: similar to dre4 CG1828-PA [Tr	0.751	0.089	0.91	7e-51
322795552	1035	hypothetical protein SINV_12622 [Solenop	0.736	0.094	0.918	8e-51
328712960	1101	PREDICTED: FACT complex subunit spt16 is	0.751	0.090	0.9	3e-50

>gi|332025790|gb|EGI65947.1| FACT complex subunit spt16 [Acromyrmex echinatior]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 97/100 (97%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           VE +TKQEIEFDTPFR+LGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVI+LEDVELVHFE
Sbjct: 793 VEGMTKQEIEFDTPFRDLGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVITLEDVELVHFE 852

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RVQF LKNFDM+FVFKDYHRKV M+NA+PMNMLDHVKEWL
Sbjct: 853 RVQFHLKNFDMIFVFKDYHRKVAMVNAVPMNMLDHVKEWL 892

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790396|ref|XP_624006.3| PREDICTED: FACT complex subunit spt16 [Apis mellifera]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/100 (92%), Positives = 97/100 (97%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           VE +TKQEIEFDTPFRELGFPGAP+RSTVLLQPTSGCLVNLTEWPPFVI+LEDVELVHFE
Sbjct: 793 VESMTKQEIEFDTPFRELGFPGAPFRSTVLLQPTSGCLVNLTEWPPFVITLEDVELVHFE 852

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RVQF LKNFDM+FVFKDYHRKV M+NAIPMNMLDHVKEWL
Sbjct: 853 RVQFHLKNFDMIFVFKDYHRKVAMLNAIPMNMLDHVKEWL 892

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855266|ref|XP_003703136.1| PREDICTED: FACT complex subunit spt16-like [Megachile rotundata]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/100 (92%), Positives = 97/100 (97%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           VE +TKQEIEFDTPFRELGFPGAP+RSTVLLQPTSGCLVNLTEWPPFVI+LEDVELVHFE
Sbjct: 793 VESMTKQEIEFDTPFRELGFPGAPFRSTVLLQPTSGCLVNLTEWPPFVITLEDVELVHFE 852

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RVQF LKNFDM+FVFKDYHRKV M+NAIPMNMLDHVKEWL
Sbjct: 853 RVQFHLKNFDMIFVFKDYHRKVAMLNAIPMNMLDHVKEWL 892

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019514|ref|XP_003693649.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit spt16-like [Apis florea]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/100 (92%), Positives = 97/100 (97%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           VE +TKQEIEFDTPFRELGFPGAP+RSTVLLQPTSGCLVNLTEWPPFVI+LEDVELVHFE
Sbjct: 793 VESMTKQEIEFDTPFRELGFPGAPFRSTVLLQPTSGCLVNLTEWPPFVITLEDVELVHFE 852

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RVQF LKNFDM+FVFKDYHRKV M+NAIPMNMLDHVKEWL
Sbjct: 853 RVQFHLKNFDMIFVFKDYHRKVAMLNAIPMNMLDHVKEWL 892

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199152|gb|EFN79862.1| FACT complex subunit spt16 [Harpegnathos saltator]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 97/100 (97%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           VE +TKQ+IEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVI+LEDVELVHFE
Sbjct: 758 VEGMTKQDIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVITLEDVELVHFE 817

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RVQF LKNFDM+FVFKDYH+KV M+NAIPMNMLDHVKEWL
Sbjct: 818 RVQFHLKNFDMIFVFKDYHKKVAMVNAIPMNMLDHVKEWL 857

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417944|ref|XP_003491657.1| PREDICTED: FACT complex subunit spt16-like [Bombus impatiens]

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 97/100 (97%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           VE +TKQEIEFDTPFR+LGFPGAP+RSTVLLQPTSGCLVNLTEWPPFVI+LEDVELVHFE
Sbjct: 793 VESMTKQEIEFDTPFRDLGFPGAPFRSTVLLQPTSGCLVNLTEWPPFVITLEDVELVHFE 852

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RVQF LKNFDM+FVFKDYHRKV M+NAIPMNMLDHVKEWL
Sbjct: 853 RVQFHLKNFDMIFVFKDYHRKVAMLNAIPMNMLDHVKEWL 892

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715630|ref|XP_003396313.1| PREDICTED: FACT complex subunit spt16-like [Bombus terrestris]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 97/100 (97%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           VE +TKQEIEFDTPFR+LGFPGAP+RSTVLLQPTSGCLVNLTEWPPFVI+LEDVELVHFE
Sbjct: 793 VESMTKQEIEFDTPFRDLGFPGAPFRSTVLLQPTSGCLVNLTEWPPFVITLEDVELVHFE 852

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RVQF LKNFDM+FVFKDYHRKV M+NAIPMNMLDHVKEWL
Sbjct: 853 RVQFHLKNFDMIFVFKDYHRKVAMLNAIPMNMLDHVKEWL 892

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082911|ref|XP_972477.1| PREDICTED: similar to dre4 CG1828-PA [Tribolium castaneum] gi|270007613|gb|EFA04061.1| hypothetical protein TcasGA2_TC014294 [Tribolium castaneum]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 95/100 (95%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           VE +TKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVI+LEDVELVHFE
Sbjct: 787 VEAMTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVITLEDVELVHFE 846

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RVQF LKNFDM+FVFKDY RK  M+NAIPMNMLDHVKEWL
Sbjct: 847 RVQFHLKNFDMIFVFKDYQRKTAMVNAIPMNMLDHVKEWL 886

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795552|gb|EFZ18248.1| hypothetical protein SINV_12622 [Solenopsis invicta]

 Score =  204 bits (520), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 90/98 (91%), Positives = 95/98 (96%)

Query: 12  HVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERV 71
            +TKQEIEFDTPFR+LGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVI+LEDVELVHFERV
Sbjct: 794 RMTKQEIEFDTPFRDLGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVITLEDVELVHFERV 853

Query: 72  QFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           QF LKNFDM+FVFKDYHRKV M+NAIPMNMLDHVKEWL
Sbjct: 854 QFHLKNFDMIFVFKDYHRKVAMLNAIPMNMLDHVKEWL 891

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712960|ref|XP_001943501.2| PREDICTED: FACT complex subunit spt16 isoform 1 [Acyrthosiphon pisum]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 90/100 (90%), Positives = 96/100 (96%)

Query: 10  VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
           VE VTKQEIEFDTPFR+LGFPGAP+RSTVLLQPTSGCLVN TEWPPFVI+LEDVELVHFE
Sbjct: 792 VETVTKQEIEFDTPFRDLGFPGAPFRSTVLLQPTSGCLVNFTEWPPFVITLEDVELVHFE 851

Query: 70  RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           RVQF LKNFDM+FVFKDY +KVVM+NAIPMNMLDHVKEWL
Sbjct: 852 RVQFHLKNFDMIFVFKDYQKKVVMVNAIPMNMLDHVKEWL 891

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
FB|FBgn0002183	1083	dre4 "dre4" [Drosophila melano	0.751	0.092	0.82	4.9e-42
ZFIN|ZDB-GENE-031118-96	1077	supt16h "suppressor of Ty 16 h	0.751	0.092	0.71	1.8e-36
UNIPROTKB|E1BNP8	1047	SUPT16H "Uncharacterized prote	0.751	0.095	0.72	4.6e-36
UNIPROTKB|E2REU7	1047	SUPT16H "Uncharacterized prote	0.751	0.095	0.72	4.6e-36
UNIPROTKB|Q9Y5B9	1047	SUPT16H "FACT complex subunit	0.751	0.095	0.72	4.6e-36
MGI|MGI:1890948	1047	Supt16 "suppressor of Ty 16" [	0.751	0.095	0.72	4.6e-36
RGD|1310032	1047	Supt16h "suppressor of Ty 16 h	0.751	0.095	0.72	4.6e-36
UNIPROTKB|F1S8K5	1048	SUPT16H "Uncharacterized prote	0.751	0.095	0.72	4.6e-36
UNIPROTKB|Q9W603	1035	supt16h "FACT complex subunit	0.751	0.096	0.72	1.2e-35
WB|WBGene00018849	1030	F55A3.3 [Caenorhabditis elegan	0.751	0.097	0.61	5.6e-30

FB|FBgn0002183 dre4 "dre4" [Drosophila melanogaster (taxid:7227)]

 Score = 456 (165.6 bits), Expect = 4.9e-42, P = 4.9e-42
 Identities = 82/100 (82%), Positives = 93/100 (93%)

Query:    10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
             VE +TK  +EFDTPFRELGFPGAP+RSTV LQPTSG LVNLTEWPPFVI+L+DVELVHFE
Sbjct:   793 VETMTKSVVEFDTPFRELGFPGAPFRSTVTLQPTSGSLVNLTEWPPFVITLDDVELVHFE 852

Query:    70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
             RVQF L+NFDM+FVFK+Y++KV M+NAIPMNMLDHVKEWL
Sbjct:   853 RVQFHLRNFDMIFVFKEYNKKVAMVNAIPMNMLDHVKEWL 892

GO:0006268 "DNA unwinding involved in replication" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0001672 "regulation of chromatin assembly or disassembly" evidence=IMP

GO:0035101 "FACT complex" evidence=IDA;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-031118-96 supt16h "suppressor of Ty 16 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 404 (147.3 bits), Expect = 1.8e-36, P = 1.8e-36
 Identities = 71/100 (71%), Positives = 88/100 (88%)

Query:    10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
             VE +TK+E+EF+ PFR+LGF GAPYRST LLQPTS  L N+TEWPPFV++L++VELVHFE
Sbjct:   832 VESLTKEELEFEVPFRDLGFQGAPYRSTCLLQPTSSSLCNVTEWPPFVVTLDEVELVHFE 891

Query:    70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
             RVQF LKNFD+V V+KDY++KV MINA+P+N LD +KEWL
Sbjct:   892 RVQFHLKNFDVVIVYKDYNKKVTMINAVPVNSLDPIKEWL 931

GO:0009987 "cellular process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E1BNP8 SUPT16H "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 400 (145.9 bits), Expect = 4.6e-36, P = 4.6e-36
 Identities = 72/100 (72%), Positives = 86/100 (86%)

Query:    10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
             VE +TK+E+EF+ PFR+LGF GAPYRST LLQPTS  LVN TEWPPFV++L++VEL+HFE
Sbjct:   787 VEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFE 846

Query:    70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
             RVQF LKNFDMV V+KDY +KV MINAIP+  LD +KEWL
Sbjct:   847 RVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWL 886

GO:0009987 "cellular process" evidence=IEA

UNIPROTKB|E2REU7 SUPT16H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 400 (145.9 bits), Expect = 4.6e-36, P = 4.6e-36
 Identities = 72/100 (72%), Positives = 86/100 (86%)

Query:    10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
             VE +TK+E+EF+ PFR+LGF GAPYRST LLQPTS  LVN TEWPPFV++L++VEL+HFE
Sbjct:   787 VEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFE 846

Query:    70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
             RVQF LKNFDMV V+KDY +KV MINAIP+  LD +KEWL
Sbjct:   847 RVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWL 886

GO:0009987 "cellular process" evidence=IEA

UNIPROTKB|Q9Y5B9 SUPT16H "FACT complex subunit SPT16" [Homo sapiens (taxid:9606)]

 Score = 400 (145.9 bits), Expect = 4.6e-36, P = 4.6e-36
 Identities = 72/100 (72%), Positives = 86/100 (86%)

Query:    10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
             VE +TK+E+EF+ PFR+LGF GAPYRST LLQPTS  LVN TEWPPFV++L++VEL+HFE
Sbjct:   787 VEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFE 846

Query:    70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
             RVQF LKNFDMV V+KDY +KV MINAIP+  LD +KEWL
Sbjct:   847 RVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWL 886

GO:0006260 "DNA replication" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0006337 "nucleosome disassembly" evidence=TAS

GO:0032786 "positive regulation of DNA-dependent transcription, elongation" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

MGI|MGI:1890948 Supt16 "suppressor of Ty 16" [Mus musculus (taxid:10090)]

 Score = 400 (145.9 bits), Expect = 4.6e-36, P = 4.6e-36
 Identities = 72/100 (72%), Positives = 86/100 (86%)

Query:    10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
             VE +TK+E+EF+ PFR+LGF GAPYRST LLQPTS  LVN TEWPPFV++L++VEL+HFE
Sbjct:   787 VEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFE 846

Query:    70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
             RVQF LKNFDMV V+KDY +KV MINAIP+  LD +KEWL
Sbjct:   847 RVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWL 886

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0009987 "cellular process" evidence=IEA

RGD|1310032 Supt16h "suppressor of Ty 16 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 400 (145.9 bits), Expect = 4.6e-36, P = 4.6e-36
 Identities = 72/100 (72%), Positives = 86/100 (86%)

Query:    10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
             VE +TK+E+EF+ PFR+LGF GAPYRST LLQPTS  LVN TEWPPFV++L++VEL+HFE
Sbjct:   787 VEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFE 846

Query:    70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
             RVQF LKNFDMV V+KDY +KV MINAIP+  LD +KEWL
Sbjct:   847 RVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWL 886

GO:0009987 "cellular process" evidence=IEA

UNIPROTKB|F1S8K5 SUPT16H "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 400 (145.9 bits), Expect = 4.6e-36, P = 4.6e-36
 Identities = 72/100 (72%), Positives = 86/100 (86%)

Query:    10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
             VE +TK+E+EF+ PFR+LGF GAPYRST LLQPTS  LVN TEWPPFV++L++VEL+HFE
Sbjct:   788 VEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFE 847

Query:    70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
             RVQF LKNFDMV V+KDY +KV MINAIP+  LD +KEWL
Sbjct:   848 RVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWL 887

GO:0009987 "cellular process" evidence=IEA

UNIPROTKB|Q9W603 supt16h "FACT complex subunit SPT16" [Xenopus laevis (taxid:8355)]

 Score = 396 (144.5 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 72/100 (72%), Positives = 86/100 (86%)

Query:    10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
             VE +TK+++EF+ PFR+LGF GAPYRST LLQPTS  LVN TEWPPFV++L++VELVHFE
Sbjct:   789 VESLTKEDLEFEIPFRDLGFNGAPYRSTCLLQPTSSSLVNTTEWPPFVVTLDEVELVHFE 848

Query:    70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
             RVQF LKNFDMV V+K+Y +KV MINAIPM  LD +KEWL
Sbjct:   849 RVQFHLKNFDMVIVYKEYGKKVTMINAIPMASLDPIKEWL 888

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00018849 F55A3.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 343 (125.8 bits), Expect = 5.6e-30, P = 5.6e-30
 Identities = 61/100 (61%), Positives = 75/100 (75%)

Query:    10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
             V  +T  + EFD+PF  LGF G PYRS   L+PT+ CLVNLTEWP F+++L +VELVHFE
Sbjct:   787 VSRLTNDQFEFDSPFAGLGFFGVPYRSATTLKPTASCLVNLTEWPTFIVTLSEVELVHFE 846

Query:    70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
             RV  QLKNFDMVF+FKDY  K  M+  IPM+ +D +KEWL
Sbjct:   847 RVSLQLKNFDMVFIFKDYKIKPQMVAQIPMSSIDKIKEWL 886

GO:0009987 "cellular process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006997 "nucleus organization" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6BXE5	SPT16_DEBHA	No assigned EC number	0.5242	0.7744	0.0997	yes	N/A
Q6C931	SPT16_YARLI	No assigned EC number	0.5363	0.7969	0.1056	yes	N/A
Q920B9	SP16H_MOUSE	No assigned EC number	0.72	0.7518	0.0955	yes	N/A
Q54S43	SPT16_DICDI	No assigned EC number	0.5434	0.6917	0.0858	yes	N/A
Q7X923	SPT16_ORYSJ	No assigned EC number	0.5161	0.6992	0.0880	yes	N/A
Q4HYB8	SPT16_GIBZE	No assigned EC number	0.5760	0.6917	0.0889	yes	N/A
Q4WJ02	SPT16_ASPFU	No assigned EC number	0.5978	0.6917	0.0902	yes	N/A
Q9Y5B9	SP16H_HUMAN	No assigned EC number	0.72	0.7518	0.0955	yes	N/A
P0CQ22	SPT16_CRYNJ	No assigned EC number	0.5462	0.7819	0.1004	yes	N/A
Q5B2X8	SPT16_EMENI	No assigned EC number	0.6086	0.6917	0.0902	yes	N/A
Q2UBF1	SPT16_ASPOR	No assigned EC number	0.5480	0.7744	0.0988	yes	N/A
Q9N5R9	SPT16_CAEEL	No assigned EC number	0.61	0.7518	0.0970	yes	N/A
O94267	SPT16_SCHPO	No assigned EC number	0.5631	0.7744	0.1010	yes	N/A
Q8IRG6	SPT16_DROME	No assigned EC number	0.82	0.7518	0.0923	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	133
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	4e-39
pfam08512	93	pfam08512, Rtt106, Histone chaperone Rttp106-like	5e-29

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score =  138 bits (349), Expect = 4e-39
 Identities = 55/103 (53%), Positives = 78/103 (75%)

Query: 7   ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELV 66
           AS +   ++  IEF   FR+LGF G P+RS+V+++PT+ CLV L E P FVI+LE+VE+V
Sbjct: 782 ASSIAEASEGRIEFKVQFRKLGFYGVPFRSSVMIKPTTDCLVQLDEAPFFVITLEEVEIV 841

Query: 67  HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
           + ERVQF LKNFD+VF+ +D++R +V IN +P+  LD +KEWL
Sbjct: 842 NLERVQFGLKNFDVVFILRDFYRPLVHINTVPVESLDKLKEWL 884

Length = 1001

>gnl|CDD|219876 pfam08512, Rtt106, Histone chaperone Rttp106-like

 Score =  100 bits (252), Expect = 5e-29
 Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 29  FPGAPYR---STVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMVFVFK 85
           FPG P     S  LL P    L+ L E PP VI+L+D+E V FERV   L+ FD+V VFK
Sbjct: 1   FPGVPCSYKASEGLLYPLEKGLLFLFEKPPLVITLDDIESVSFERVSGGLRTFDLVVVFK 60

Query: 86  DYHRKVVMINAIPMNMLDHVKEWLK 110
            Y   V   ++I    LD +K++LK
Sbjct: 61  -YSGPVHEFSSIDREELDVLKDFLK 84

This family includes Rttp106, a histone chaperone involved in heterochromatin-mediated silencing. This domain belongs to the Pleckstrin homology domain superfamily. Length = 93

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
KOG1189|consensus	960		100.0
COG5406	1001	Nucleosome binding factor SPN, SPT16 subunit [Tran	100.0
PF08512	95	Rtt106: Histone chaperone Rttp106-like; InterPro:	99.95
KOG0526|consensus	615		96.09
PF13104	45	DUF3956: Protein of unknown function (DUF3956)	94.77
COG5165	508	POB3 Nucleosome-binding factor SPN, POB3 subunit [	93.4
PF09186	56	DUF1949: Domain of unknown function (DUF1949); Int	80.26

>KOG1189|consensus

Probab=100.00  E-value=4.3e-58  Score=420.87  Aligned_cols=121  Identities=58%  Similarity=1.020  Sum_probs=119.6

Q ss_pred             ChhHHHHHHHHhhcCCceEEeeccccCCccCccccceEEEeeCcccceeeeccCcEEEEeCceeEEEEeeeeccccceeE
Q psy9775           1 MRIATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDM   80 (133)
Q Consensus         1 ~~Fk~F~~kve~~~~~~~efdiP~reLgF~GVP~rs~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~f~lKnFDm   80 (133)
                      |+|++||++|+++++..++||+|||+|||+||||||+|+||||++|||+|||||||||||+|||||||||||||+|||||
T Consensus       724 ~~FksF~~kv~~~~~~~~efd~pfr~lGF~GvP~rssv~i~pTs~cLV~LtE~P~~VvtL~eVEiv~~ERV~f~lKnfDm  803 (960)
T KOG1189|consen  724 MAFKSFAEKVAEATESELEFDVPFRELGFNGVPFRSSVFIQPTSSCLVNLTEWPFFVVTLEEVEIVNLERVQFGLKNFDM  803 (960)
T ss_pred             HHHHHHHHHHHhhhccceeeccchhhcCcCCCCccceeeeecchhhhhccccCCceEEeecceeeeeeeeeeeccccceE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCceEEeeeeCCChHHHHhhhccCCceeeeccc
Q psy9775          81 VFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSESTD  121 (133)
Q Consensus        81 vfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~dI~y~E~~~  121 (133)
                      |||||||+|+|+||++|||++||+||||||+|||+||||++
T Consensus       804 vfIfKd~~k~v~~i~svp~~sLd~iKEWLdscDI~y~Eg~~  844 (960)
T KOG1189|consen  804 VFIFKDFKKKVTMINSVPMESLDKLKEWLDSCDIKYTEGVQ  844 (960)
T ss_pred             EEEeccccccceeeeccchhhhhHHHHhhhcccceeecccc
Confidence            99999999999999999999999999999999999999987

>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

Probab=100.00  E-value=2.6e-51  Score=373.31  Aligned_cols=120  Identities=47%  Similarity=0.837  Sum_probs=118.5

Q ss_pred             hhHHHHHHHHhhcCCceEEeeccccCCccCccccceEEEeeCcccceeeeccCcEEEEeCceeEEEEeeeeccccceeEE
Q psy9775           2 RIATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMV   81 (133)
Q Consensus         2 ~Fk~F~~kve~~~~~~~efdiP~reLgF~GVP~rs~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~f~lKnFDmv   81 (133)
                      +||.||++|++++++.++|++|||+|||+|||+||+|+|+||++|||+|+|+|||||||+||||||||||||||||||||
T Consensus       777 eFksFa~~Iaeas~gri~~~~~fr~lgF~GVPfRs~V~~~pTtdCLVqL~e~Pf~VitLeevEi~~lERVqfglKnfD~v  856 (1001)
T COG5406         777 EFKSFASSIAEASEGRIEFKVQFRKLGFYGVPFRSSVMIKPTTDCLVQLDEAPFFVITLEEVEIVNLERVQFGLKNFDVV  856 (1001)
T ss_pred             HHHHHHHHHHHhhcCceEEeeechhccccCCccccceeeecchhheeeccCCceEEEEecceeEEeeeeEEeecccceEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCceEEeeeeCCChHHHHhhhccCCceeeeccc
Q psy9775          82 FVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSESTD  121 (133)
Q Consensus        82 fIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~dI~y~E~~~  121 (133)
                      ||||||.||++|||+||+++||++|+||+||||+||||+.
T Consensus       857 Fi~~df~rp~vhIntvpvesld~lKewLds~di~f~e~~~  896 (1001)
T COG5406         857 FILRDFYRPLVHINTVPVESLDKLKEWLDSNDILFMETSA  896 (1001)
T ss_pred             EEeccccCCcceeccccHHHHHHHHHHhhhcCceeEeccc
Confidence            9999999999999999999999999999999999999975

>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families

Probab=99.95  E-value=8.3e-29  Score=175.85  Aligned_cols=90  Identities=37%  Similarity=0.593  Sum_probs=82.5

Q ss_pred             ccCcccc---ceEEEeeCcccceeeeccCcEEEEeCceeEEEEeee-eccccceeEEEEeecCCCCceEEeeeeCCChHH
Q psy9775          29 FPGAPYR---STVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERV-QFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDH  104 (133)
Q Consensus        29 F~GVP~r---s~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV-~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~  104 (133)
                      |+|||.+   +.++|+|+.+||+.+.+.|+++++++|||.|+|||| +.+.|||||++++|||++++.++++||.++++.
T Consensus         1 f~~V~c~~ka~~g~L~pl~~~l~f~~~kP~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~~~~~~~~fs~I~~~e~~~   80 (95)
T PF08512_consen    1 FYGVKCSYKANEGFLYPLEKCLLFGLEKPPFVIPLDDIESVEFERVSSFSSKTFDLVVILKDYEGPPHEFSSIDREEYDN   80 (95)
T ss_dssp             -EEEEEEETTEEEEEEEESSEEEEECSSS-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT-TS-EEEEEEEEGGGHHH
T ss_pred             CCceeEeccccCEEEEEccceEEEecCCCeEEEEhhHeeEEEEEecccCcceEEEEEEEEecCCCCcEEEeeECHHHHHH
Confidence            7899999   999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             HHhhhccCCceeee
Q psy9775         105 VKEWLKPHSHGSSE  118 (133)
Q Consensus       105 IKeWL~s~dI~y~E  118 (133)
                      |++||++++|+|++
T Consensus        81 l~~~l~~~~i~~~~   94 (95)
T PF08512_consen   81 LKDFLKSKNIKIKN   94 (95)
T ss_dssp             HHHHHHHCCHHCCC
T ss_pred             HHHHHHHCCCEeec
Confidence            99999999999975

It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.

>KOG0526|consensus

Probab=96.09  E-value=0.017  Score=53.57  Aligned_cols=99  Identities=19%  Similarity=0.309  Sum_probs=82.9

Q ss_pred             eEEeeccccCCccCccc-----cc-eEEEeeCcccceeeeccCcEEEEeCceeEEEEeee---eccccceeEEEEeecCC
Q psy9775          18 IEFDTPFRELGFPGAPY-----RS-TVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERV---QFQLKNFDMVFVFKDYH   88 (133)
Q Consensus        18 ~efdiP~reLgF~GVP~-----rs-~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV---~f~lKnFDmvfIfKDy~   88 (133)
                      .+.-+|=+=+|=.|.|.     |. .-.|+|--.|..=|.- |++-|.++||-.|||+|.   +-..++|||-+..|-= 
T Consensus       326 rKit~Pg~F~s~~g~~av~CS~KAneG~LYPLekgFlFl~K-P~l~I~f~EIS~V~fsR~~~s~t~trtFD~ei~lk~g-  403 (615)
T KOG0526|consen  326 RKITVPGEFLSHSGTAAVKCSFKANEGLLYPLEKGFLFLPK-PPLYIRFEEISSVNFSRSGLSGTSTRTFDFEITLKSG-  403 (615)
T ss_pred             ceeeccccccccCCCceeeeeecccCceEeecccceEeecC-CceEeeccceeeEEEEeccCCccceeeEEEEEEEcCC-
Confidence            55677877777777664     32 4579999999998885 667789999999999999   5778999999999964 


Q ss_pred             CCceEEeeeeCCChHHHHhhhccCCceeeec
Q psy9775          89 RKVVMINAIPMNMLDHVKEWLKPHSHGSSES  119 (133)
Q Consensus        89 k~v~~I~sIp~~~Ld~IKeWL~s~dI~y~E~  119 (133)
                       .....++|..+--.++-++|++-+|+-...
T Consensus       404 -~~~tFs~i~keE~~~L~~fl~sK~lki~N~  433 (615)
T KOG0526|consen  404 -TSYTFSNISKEEYGKLFDFLNSKGLKIRNE  433 (615)
T ss_pred             -CeeeecccCHHHHHHHHHHHhhcCceeecC
Confidence             568999999999999999999999987543

>PF13104 DUF3956: Protein of unknown function (DUF3956)

Probab=94.77  E-value=0.039  Score=35.67  Aligned_cols=27  Identities=26%  Similarity=0.529  Sum_probs=25.1

Q ss_pred             cccceeeeccCcEEEEeCceeEEEEee
Q psy9775          44 SGCLVNLTEWPPFVISLEDVELVHFER   70 (133)
Q Consensus        44 ~~CLV~LtE~PffVvtL~eVEiV~fER   70 (133)
                      .+|.++.+-+|++|+++.-|||+.+|=
T Consensus         2 ~sc~~fvngqp~lv~svagieiarlei   28 (45)
T PF13104_consen    2 ESCVVFVNGQPFLVVSVAGIEIARLEI   28 (45)
T ss_pred             ceEEEEecCCeeEEEEEeeeEEEEEee
Confidence            479999999999999999999999983

>COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

Probab=93.40  E-value=0.21  Score=45.25  Aligned_cols=77  Identities=22%  Similarity=0.437  Sum_probs=65.5

Q ss_pred             EEEeeCcccceeeeccCcEEEEeCceeEEEEeeee---ccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhccCCc
Q psy9775          38 VLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQ---FQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSH  114 (133)
Q Consensus        38 v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~---f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~dI  114 (133)
                      -.|+|--+|..-|+ -|-+-+.++||-+|.|-|+.   -..|+|||.++..-=  .-.+.+.|...---.+-++|.|.+|
T Consensus       361 GqLYpLD~~flFlp-Kptl~l~~sdis~V~~SRig~ss~~arTFDlt~~lrs~--~sytF~nisk~Eq~aLeqfl~sK~i  437 (508)
T COG5165         361 GQLYPLDDCFLFLP-KPTLRLDLSDISLVEFSRIGLSSMQARTFDLTLFLRSP--GSYTFNNISKDEQGALEQFLHSKGI  437 (508)
T ss_pred             ceEeeccceEEecc-CceEEeecccceEEEEeecccchhhhceeeEEEEEecC--CceeecCcCHHHHHHHHHHHhccCc
Confidence            46889999998887 47889999999999999998   457999999998753  3378888988888889999999999


Q ss_pred             eee
Q psy9775         115 GSS  117 (133)
Q Consensus       115 ~y~  117 (133)
                      +--
T Consensus       438 k~~  440 (508)
T COG5165         438 KAR  440 (508)
T ss_pred             eec
Confidence            854

>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins

Probab=80.26  E-value=0.22  Score=30.59  Aligned_cols=45  Identities=22%  Similarity=0.355  Sum_probs=39.9

Q ss_pred             EEeeeeccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhcc
Q psy9775          67 HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKP  111 (133)
Q Consensus        67 ~fERV~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s  111 (133)
                      ++.+|..-+.+++..++=++|+-.|...=.||.+..+.+++||.+
T Consensus         7 ~~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~   51 (56)
T PF09186_consen    7 QYGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTD   51 (56)
T ss_dssp             CHHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHH
Confidence            445667778889999999999999999999999999999999975

They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
4ioy_X	285	Structure Of The Spt16 Middle Domain Reveals Functi		6e-24

>pdb|4IOY|X Chain X, Structure Of The Spt16 Middle Domain Reveals Functional Features Of The Histone Chaperone Fact Length = 285

Iteration: 1
 Score =  105 bits (263), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 67/103 (65%)
Query: 7   ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELV 66
           A  +   +   +  +  FR+LGF G P RS V   PT+ CLV L E P  VI+LE+VE+ 
Sbjct: 139 ADAIAEASNGLLTVENTFRDLGFQGVPNRSAVFCMPTTDCLVQLIEPPFLVINLEEVEIC 198
Query: 67  HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
             ERVQF LKNFDMVFV+KD+++ V  IN +P+  LD +K+WL
Sbjct: 199 ILERVQFGLKNFDMVFVYKDFNKPVTHINTVPIESLDFLKQWL 241

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
2gcl_A	261	Hypothetical 63.0 kDa protein in DAK1-ORC1 interge	3e-08

>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A Length = 261

 Score = 49.7 bits (118), Expect = 3e-08
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 19  EFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQF---QL 75
           E+ + + +     +   +   L P       LT+ P   I   DV +V+  R        
Sbjct: 157 EYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTK-PTLYIPFSDVSMVNISRAGQTSTSS 215

Query: 76  KNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPH 112
           + FD+  V +  +R       I       ++++LK  
Sbjct: 216 RTFDLEVVLRS-NRGSTTFANISKEEQQLLEQFLKSK 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
2gcl_A	261	Hypothetical 63.0 kDa protein in DAK1-ORC1 interge	97.58
3fss_A	237	Histone chaperone RTT106; chromosomal protein, nuc	96.41

>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A

Probab=97.58  E-value=0.00023  Score=58.27  Aligned_cols=78  Identities=22%  Similarity=0.347  Sum_probs=66.6

Q ss_pred             eEEEeeCcccceeeeccCcEEEEeCceeEEEEeeeec---cccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhccCC
Q psy9775          37 TVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQF---QLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHS  113 (133)
Q Consensus        37 ~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~f---~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~d  113 (133)
                      .-.|.|...|++=+. -|+..+..+||+-|.|.||+-   +.++|||++..|+ .......++|+.+..+.|-++|.+.+
T Consensus       175 eG~LypL~~gflF~~-KP~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~-g~~~~~Fs~IdreE~~~L~~ylk~k~  252 (261)
T 2gcl_A          175 EGYLYPLDNAFFFLT-KPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRS-NRGSTTFANISKEEQQLLEQFLKSKN  252 (261)
T ss_dssp             EEEEEECSSEEEEES-SSCEEEEGGGEEEEEEEC--------CEEEEEEEEST-TCCEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred             ceEEEEecCceEEee-CCcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcC-CCccEEEcccCHHHHHHHHHHHHHcC
Confidence            478999999999985 599999999999999999943   5799999999997 33678999999999999999999998


Q ss_pred             cee
Q psy9775         114 HGS  116 (133)
Q Consensus       114 I~y  116 (133)
                      |+-
T Consensus       253 l~i  255 (261)
T 2gcl_A          253 LRV  255 (261)
T ss_dssp             CCE
T ss_pred             Cee
Confidence            864

>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A

Probab=96.41  E-value=0.012  Score=48.00  Aligned_cols=71  Identities=14%  Similarity=0.208  Sum_probs=63.6

Q ss_pred             eEEEeeCcccceeeeccCcEEEEeCceeEEEEeeeeccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhcc
Q psy9775          37 TVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKP  111 (133)
Q Consensus        37 ~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s  111 (133)
                      --.|.|..+|+.-..--|...+.++||+-|.+-||  +-++||+++..|+  -.-..-++|..+..+.|-+|+.+
T Consensus       166 eG~LyfL~~~ilFgf~KP~l~i~~~dI~svs~Srv--~~RTFdl~v~~k~--g~e~eFsmIDq~E~~~Id~fvk~  236 (237)
T 3fss_A          166 EGTLYFLPDHIIFGFKKPILLLDASDIESITYSSI--TRLTFNASLVTKD--GEKYEFSMIDQTEYAKIDDYVKR  236 (237)
T ss_dssp             EEEEEECSSEEEEESSSSCEEEEGGGEEEEEEESC--CSSEEEEEEEETT--SCEEEEEEEEGGGHHHHHHHHHC
T ss_pred             CeEEEEecCceEEecCCCeEEEEehhEEEEEEEec--cCcEEEEEEEECC--CCeEEEeecCHHHHHHHHHHHhc
Confidence            45788999999998888999999999999999999  5899999999996  34689999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d2gcla1	238	b.55.1.10 (A:237-474) FACT complex subunit POB3, m	1e-25

>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 238

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: SSRP1-like
domain: FACT complex subunit POB3, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.9 bits (236), Expect = 1e-25
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 19  EFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQ---FQL 75
           E+ + + +     +   +   L P       LT  P   I   DV +V+  R        
Sbjct: 138 EYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLT-KPTLYIPFSDVSMVNISRAGQTSTSS 196

Query: 76  KNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPH 112
           + FD+  V +   R       I       ++++LK  
Sbjct: 197 RTFDLEVVLRSN-RGSTTFANISKEEQQLLEQFLKSK 232

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d2gcla1	238	FACT complex subunit POB3, middle domain {Baker's	99.92

>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: SSRP1-like
domain: FACT complex subunit POB3, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=7.3e-26  Score=179.63  Aligned_cols=110  Identities=17%  Similarity=0.296  Sum_probs=93.2

Q ss_pred             HHHHHHHHhhcCCc----eEEeeccccCCccCccccceEEEeeCcccceeeeccCcEEEEeCceeEEEEeeeecc---cc
Q psy9775           4 ATGASMVEHVTKQE----IEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQ---LK   76 (133)
Q Consensus         4 k~F~~kve~~~~~~----~efdiP~reLgF~GVP~rs~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~f~---lK   76 (133)
                      +.+++-....++..    -+|+.|.+++|+.|++.++..+|+|+.+||+.+.+ |+++++++|||.|+||||+.|   +|
T Consensus       119 ~~~~~~~k~l~~~kv~~p~~f~~~~~~~~v~~~~~~~~G~L~pl~~~llf~~K-P~~~i~~~eI~~V~f~Rv~~~~~~~r  197 (238)
T d2gcla1         119 IVLSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTK-PTLYIPFSDVSMVNISRAGQTSTSSR  197 (238)
T ss_dssp             HHHHHHHHHHHCCCEECCCSCCCTTSCSCEEEEETTEEEEEEECSSEEEEESS-SCEEEEGGGEEEEEEEC--------C
T ss_pred             HHHHHHHHHHhCcEecCCccccCCCCcceEEEeeccccEEEEEccCeEEEecC-CcEEEEehhEeEEEEEeecCCccccc
Confidence            34444445555433    48999999999999999999999999999999986 778999999999999999765   89


Q ss_pred             ceeEEEEeecCCCCceEEeeeeCCChHHHHhhhccCCce
Q psy9775          77 NFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHG  115 (133)
Q Consensus        77 nFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~dI~  115 (133)
                      ||||++++|| .+++.++++||++.++.|++||++++|+
T Consensus       198 tFD~~v~~k~-~~~~~~fs~I~~~e~~~i~~~l~~~~ik  235 (238)
T d2gcla1         198 TFDLEVVLRS-NRGSTTFANISKEEQQLLEQFLKSKNLR  235 (238)
T ss_dssp             EEEEEEEEST-TCCEEEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred             eeeEEEEEeC-CCccEEEeccCHHHHHHHHHHHHHCCCc
Confidence            9999999999 6778999999999999999999999986