Psyllid ID: psy9845

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MISLSSRTGLFIFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAAAPVADDWTTPVGADDWGQDWSNSTSQW
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHccccEEEEEccccccccHHHHHHccccEEEEEcccccccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccHHHHHHHccccEEEEEEccccccccHHHHHEccccEEEEEcccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccEcccEEEEccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHccccccccHHcccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccHHHccccccc
Coil and Loop (DISEMBL)
mislssrtglfifpnlqfqaafreprllvvtdphtdhqpiteaayvnipviafcntesplrfvdiaipcnnksphsIGLMWWLLAREVLRfrgtiprepkwdVVVDLFfyrdpeeaeKEEQAGKESAAAiadkpadefaahapteswndtpilsvscggcwlvKFCVSEAEKEEQAGKESAaaiadkpvdefaahapteswndtvvpsadlapqswaeesasipqyapapqaaaapvaddwttpvgaddwgqdwsnstsqw
Flexible Loop (DISEMBL)
mislssrtglfiFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRgtiprepkwdvVVDLFFYRDPEEAEKEEQAGKESAAAIADKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEFAAHApteswndtvvPSADLAPQSWAEESASIPQYAPAPQAAAAPVADDWTTPVGADDWGQDWSNSTSQW
Low Complexity Region (SEG)
MISLSSRTGLFIFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPeeaekeeqagkesaaaIADKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIpqyapapqaaaapvaDDWTTPVGADDWGQDWSNSTSQW
Disordered region (IsUnstruct)
*******TGLFIFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYR**********************************SWNDTPILSVSCGGCWLVKFCVS************************************************************************WT*******************
Disordered Region (DISOPRED)
*ISLSSRTGLFIFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRD****************AIADKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAAAPVADDWTTPVGADDWGQDWSN*****
Disordered Region (DISEMBL)
MISLSSRTGLFIFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPE***************IADKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSE*************AIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQ************ADDWTTPVGADDWGQDWSNSTSQW
Disordered Region (DISPRO)
MISLSSRTGLFIFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKE****************************************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISLSSRTGLFIFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAAAPVADDWTTPVGADDWGQDWSNSTSQW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q0PXX8	301	40S ribosomal protein SA	N/A	N/A	0.731	0.634	0.746	2e-84
Q5UAP4	306	40S ribosomal protein SA	N/A	N/A	0.509	0.434	0.717	1e-50
A3RLT6	301	40S ribosomal protein SA	N/A	N/A	0.471	0.408	0.739	5e-50
A2I3Z2	308	40S ribosomal protein SA	N/A	N/A	0.402	0.340	0.857	1e-49
Q3ZM03	306	40S ribosomal protein SA	N/A	N/A	0.712	0.607	0.464	1e-48
Q90YS4	317	40S ribosomal protein SA	N/A	N/A	0.432	0.356	0.761	1e-48
Q803F6	308	40S ribosomal protein SA	yes	N/A	0.432	0.366	0.761	1e-48
Q6P8D1	306	40S ribosomal protein SA	yes	N/A	0.747	0.637	0.448	2e-48
Q4GWZ2	295	40S ribosomal protein SA	yes	N/A	0.486	0.430	0.684	2e-48
Q2L9X0	295	40S ribosomal protein SA	N/A	N/A	0.486	0.430	0.684	2e-48

>sp|Q0PXX8|RSSA_DIACI 40S ribosomal protein SA OS=Diaphorina citri PE=2 SV=1

 Score =  312 bits (799), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 183/245 (74%), Positives = 185/245 (75%), Gaps = 54/245 (22%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS
Sbjct: 111 QIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD 136
           IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD
Sbjct: 171 IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD 230

Query: 137 EFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEFAAHA 196
           EFAAHAPTESWNDT + S                                         A
Sbjct: 231 EFAAHAPTESWNDTVVPSADL--------------------------------------A 252

Query: 197 PTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAAAPVADDWTTPVGADDWGQDWSN 256
           P +SW               AEESASIPQYAPAPQAAAAPVADDWTTPVGADDWGQDWSN
Sbjct: 253 P-QSW---------------AEESASIPQYAPAPQAAAAPVADDWTTPVGADDWGQDWSN 296

Query: 257 STSQW 261
           STSQW
Sbjct: 297 STSQW 301

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
Diaphorina citri (taxid: 121845)

>sp|Q5UAP4|RSSA_BOMMO 40S ribosomal protein SA OS=Bombyx mori PE=2 SV=1

 Score =  199 bits (507), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/138 (71%), Positives = 109/138 (78%), Gaps = 5/138 (3%)

Query: 13  FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
           F N Q QAAFREPRLL+V DP  DHQPITEA+YVNIPVIA CNT+SPLRFVDIAIPCN K
Sbjct: 108 FTN-QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 166

Query: 73  SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIAD 132
           S HSIGLMWWLLAREVLR RG +PR+ +WDVVV+LFFYRDPEE+EK+EQ  KE A   A 
Sbjct: 167 SSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVELFFYRDPEESEKDEQQAKEQAVVPA- 225

Query: 133 KPADEFAAHAPTESWNDT 150
           KP      H   E WN+T
Sbjct: 226 KPEVVAPVH---EDWNET 240

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.

Bombyx mori (taxid: 7091)

>sp|A3RLT6|RSSA_PINFU 40S ribosomal protein SA OS=Pinctada fucata PE=2 SV=1

 Score =  197 bits (502), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 91/123 (73%), Positives = 105/123 (85%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLLVVTDP  DHQP+TEA+YVNIPVIA CNT+SPLR+VD+AIPCNNKS HS
Sbjct: 111 QIQAAFREPRLLVVTDPRIDHQPVTEASYVNIPVIALCNTDSPLRYVDVAIPCNNKSVHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD 136
           +GLMWWLLAREVLR RGTI R+  W+V+VDL+FYRDPEEAEKEEQ   E  A  +D+  D
Sbjct: 171 VGLMWWLLAREVLRLRGTISRDHPWEVMVDLYFYRDPEEAEKEEQTVVEKPAVKSDEVQD 230

Query: 137 EFA 139
           ++A
Sbjct: 231 QWA 233

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.

Pinctada fucata (taxid: 50426)

>sp|A2I3Z2|RSSA_MACHI 40S ribosomal protein SA OS=Maconellicoccus hirsutus PE=2 SV=1

 Score =  196 bits (498), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/105 (85%), Positives = 96/105 (91%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLLVVTDP  D QPITEA+YVNIPVIAFCNT+SPLR+VDIAIPCN KS HS
Sbjct: 111 QIQAAFREPRLLVVTDPAEDKQPITEASYVNIPVIAFCNTDSPLRYVDIAIPCNTKSAHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQ 121
           IGLMWWLLAREVLR RG+IPR+ KWDVVVDLFFYRDPEE EKE+Q
Sbjct: 171 IGLMWWLLAREVLRLRGSIPRDGKWDVVVDLFFYRDPEEVEKEDQ 215

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.

Maconellicoccus hirsutus (taxid: 177089)

>sp|Q3ZM03|RSSA_XENLA 40S ribosomal protein SA OS=Xenopus laevis GN=rpsa PE=1 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/254 (46%), Positives = 141/254 (55%), Gaps = 68/254 (26%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLLVVTDP  DHQPITEA+YVNIP IA CNT+SPLR+VDIAIPCNNK  HS
Sbjct: 111 QIQAAFREPRLLVVTDPRADHQPITEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD 136
           +GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDPEE EKEEQA  E A         
Sbjct: 171 VGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKATT------- 223

Query: 137 EFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEFAAHA 196
                                              KEE  G+ +A      PV EF   A
Sbjct: 224 -----------------------------------KEEFQGEWTA------PVAEF-PQA 241

Query: 197 PTESWNDTV-VPSADLAPQSWAEESASIPQYAPAPQAAAAPVADDWTT-PVGADDW---- 250
               W++ V VPS  +  Q +  E   +P   PAP+       +DW+T P   DDW    
Sbjct: 242 EVADWSEGVQVPSVPI--QQFTAERTDVP---PAPKP-----TEDWSTQPASTDDWSAAP 291

Query: 251 ---GQDWSNSTSQW 261
                +W+ +T++W
Sbjct: 292 TAQASEWTGTTTEW 305

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis.

Xenopus laevis (taxid: 8355)

>sp|Q90YS4|RSSA_ICTPU 40S ribosomal protein SA OS=Ictalurus punctatus GN=rpsa PE=2 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 86/113 (76%), Positives = 96/113 (84%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLL+VTDP  DHQP+TEA+YVNIP IA CNT+SPLR+VDIAIPCNNK PHS
Sbjct: 111 QIQAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGPHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAA 129
           +GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDPEE EKEEQA  E A  
Sbjct: 171 VGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVG 223

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis.

Ictalurus punctatus (taxid: 7998)

>sp|Q803F6|RSSA_DANRE 40S ribosomal protein SA OS=Danio rerio GN=rpsa PE=2 SV=1

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 86/113 (76%), Positives = 96/113 (84%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLL+VTDP  DHQP+TEA+YVNIP IA CNT+SPLR+VDIAIPCNNK PHS
Sbjct: 111 QIQAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGPHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAA 129
           +GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDPEE EKEEQA  E A  
Sbjct: 171 VGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVG 223

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis.

Danio rerio (taxid: 7955)

>sp|Q6P8D1|RSSA_XENTR 40S ribosomal protein SA OS=Xenopus tropicalis GN=rpsa PE=2 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/245 (44%), Positives = 139/245 (56%), Gaps = 50/245 (20%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLLVVTDP  DHQP+TEA+YVNIP IA CNT+SPLR+VDIAIPCNNK  HS
Sbjct: 111 QIQAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD 136
           +GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDPEE EKEEQA  E A        +
Sbjct: 171 VGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKATT-----KE 225

Query: 137 EFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEFAAHA 196
           E+                    G W     V+E  + E A       +   P+ +F A  
Sbjct: 226 EYQ-------------------GEWTAP--VAEFPQAEVADWSEGVQVPSVPIQQFPAER 264

Query: 197 PTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAAAPVADDWTTPVGADDWGQDWSN 256
           P        +P+A  A + W+ + AS   ++ AP A A+                 +W+ 
Sbjct: 265 PE-------IPAAKPAAEDWSSQPASTDDWSAAPTAQAS-----------------EWTG 300

Query: 257 STSQW 261
           +T++W
Sbjct: 301 TTTEW 305

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis.

Xenopus tropicalis (taxid: 8364)

>sp|Q4GWZ2|RSSA_PIG 40S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=1 SV=3

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/133 (68%), Positives = 102/133 (76%), Gaps = 6/133 (4%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK  HS
Sbjct: 111 QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIAD---- 132
           +GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDPEE EKEEQA  E A    +    
Sbjct: 171 VGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGE 230

Query: 133 --KPADEFAAHAP 143
              PA EF A  P
Sbjct: 231 WTAPAPEFTATQP 243

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteria. Acts as a PPP1R16B-dependent substrate of PPP1CA.

Sus scrofa (taxid: 9823)

>sp|Q2L9X0|RSSA_CHLAE 40S ribosomal protein SA OS=Chlorocebus aethiops GN=RPSA PE=2 SV=3

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/133 (68%), Positives = 102/133 (76%), Gaps = 6/133 (4%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK  HS
Sbjct: 111 QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIAD---- 132
           +GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDPEE EKEEQA  E A    +    
Sbjct: 171 VGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGE 230

Query: 133 --KPADEFAAHAP 143
              PA EF A  P
Sbjct: 231 WTAPAPEFTATQP 243

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteria. Acts as a PPP1R16B-dependent substrate of PPP1CA.

Chlorocebus aethiops (taxid: 9534)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
122066029	301	RecName: Full=40S ribosomal protein SA g	0.731	0.634	0.746	1e-82
242013672	288	40S ribosomal protein SA, putative [Pedi	0.432	0.392	0.867	5e-54
315115409	306	ribosomal protein SA [Euphydryas aurinia	0.505	0.431	0.714	2e-50
342356397	303	ribosomal protein SA [Heliconius melpome	0.505	0.435	0.707	2e-50
307199481	314	40S ribosomal protein SA [Harpegnathos s	0.463	0.385	0.773	3e-50
389611625	242	stubarista [Papilio xuthus]	0.505	0.545	0.727	3e-50
389610689	308	stubarista [Papilio polytes]	0.513	0.435	0.728	5e-50
318087148	304	putative ribosomal protein SA [Latrodect	0.482	0.414	0.734	2e-49
17298117	312	ribosome-associated protein P40 [Bombyx	0.509	0.426	0.724	2e-49
162952033	306	40S ribosomal protein SA [Bombyx mori] g	0.509	0.434	0.717	7e-49

>gi|122066029|sp|Q0PXX8.1|RSSA_DIACI RecName: Full=40S ribosomal protein SA gi|110671460|gb|ABG81981.1| putative 40S ribosomal protein SA [Diaphorina citri]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 183/245 (74%), Positives = 185/245 (75%), Gaps = 54/245 (22%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS
Sbjct: 111 QIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD 136
           IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD
Sbjct: 171 IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD 230

Query: 137 EFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEFAAHA 196
           EFAAHAPTESWNDT + S                                         A
Sbjct: 231 EFAAHAPTESWNDTVVPSADL--------------------------------------A 252

Query: 197 PTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAAAPVADDWTTPVGADDWGQDWSN 256
           P +SW               AEESASIPQYAPAPQAAAAPVADDWTTPVGADDWGQDWSN
Sbjct: 253 P-QSW---------------AEESASIPQYAPAPQAAAAPVADDWTTPVGADDWGQDWSN 296

Query: 257 STSQW 261
           STSQW
Sbjct: 297 STSQW 301

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013672|ref|XP_002427526.1| 40S ribosomal protein SA, putative [Pediculus humanus corporis] gi|212511928|gb|EEB14788.1| 40S ribosomal protein SA, putative [Pediculus humanus corporis]

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 98/113 (86%), Positives = 106/113 (93%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLL+VTDP TDHQPITEA+YVNIPVIAFCNT+SPLRFVDIAIPCNNK+PHS
Sbjct: 111 QIQAAFREPRLLIVTDPQTDHQPITEASYVNIPVIAFCNTDSPLRFVDIAIPCNNKAPHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAA 129
           IGLMWWLLAREVLR RG+IPRE KWDVVVDLFFYRDPEEAEK++QA KE A +
Sbjct: 171 IGLMWWLLAREVLRLRGSIPRETKWDVVVDLFFYRDPEEAEKDDQATKELAGS 223

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|315115409|gb|ADT80677.1| ribosomal protein SA [Euphydryas aurinia]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/140 (71%), Positives = 108/140 (77%), Gaps = 8/140 (5%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLL+V DP  DHQPITEA+YVNIPVIAFCNT+SPLRFVDIAIPCN KS HS
Sbjct: 111 QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIAFCNTDSPLRFVDIAIPCNTKSSHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD 136
           IGLMWWLLAREVLR RG +PR+ +WDVVVDLFFYRDPEE+EKEEQ  KE  A +A KP  
Sbjct: 171 IGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKEEQQAKEQ-AVVAAKPEV 229

Query: 137 EFAAH-------APTESWND 149
               H        P  SW D
Sbjct: 230 AAPVHEDYIEPVEPVTSWTD 249

Source: Euphydryas aurinia

Species: Euphydryas aurinia

Genus: Euphydryas

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|342356397|gb|AEL28857.1| ribosomal protein SA [Heliconius melpomene cythera]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 112/140 (80%), Gaps = 8/140 (5%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLL+V DP  DHQPITEA+YVNIPVIAFCNT+SPLRFVDIAIPCN KS HS
Sbjct: 111 QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIAFCNTDSPLRFVDIAIPCNTKSSHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPA- 135
           IGLMWWLLAREVLR RGT+PR+ +WDVVVDLFF+RDPEE+EKEEQ  KE  A +A KP  
Sbjct: 171 IGLMWWLLAREVLRLRGTLPRDQRWDVVVDLFFFRDPEESEKEEQQAKEQ-AVVAAKPEV 229

Query: 136 ------DEFAAHAPTESWND 149
                 +++    P  SWN+
Sbjct: 230 PAPTVHEDYEPPEPVASWNE 249

Source: Heliconius melpomene cythera

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199481|gb|EFN80094.1| 40S ribosomal protein SA [Harpegnathos saltator]

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/128 (77%), Positives = 107/128 (83%), Gaps = 7/128 (5%)

Query: 13  FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
           F N Q QAAFREPRLLVVTDP TDHQPITEA+YVNIPVIAFCNT+SPLRFVDIAIPCN K
Sbjct: 110 FTN-QIQAAFREPRLLVVTDPSTDHQPITEASYVNIPVIAFCNTDSPLRFVDIAIPCNTK 168

Query: 73  SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIAD 132
           S  ++GLMWWLL REVLR RG+IPRE KWDV+VDLFFYRDPEE +KEEQA KE A     
Sbjct: 169 SVLTVGLMWWLLTREVLRLRGSIPRETKWDVMVDLFFYRDPEEVQKEEQAAKEIA----- 223

Query: 133 KPADEFAA 140
            PA EF +
Sbjct: 224 -PAKEFTS 230

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611625|dbj|BAM19404.1| stubarista [Papilio xuthus]

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 109/136 (80%), Gaps = 4/136 (2%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLL+V DP  DHQPITEA+YVNIPVIAFCNT+SPLRFVDIAIPCN KS HS
Sbjct: 111 QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIAFCNTDSPLRFVDIAIPCNTKSSHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD 136
           IGLMWWLLAREVLR RG +PR+ +WDVVVDLFFYRDPEE+EKEEQ  KE  A +A KP  
Sbjct: 171 IGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKEEQQAKEQ-AVVAAKPDV 229

Query: 137 EFAAHAPTESWNDTPI 152
               H   E WN+  +
Sbjct: 230 PPPVH---EDWNERKL 242

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389610689|dbj|BAM18956.1| stubarista [Papilio polytes]

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 112/140 (80%), Gaps = 6/140 (4%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLL+V DP  DHQPITEA+YVNIPVIAFCNT+SPLRFVDIAIPCN KS HS
Sbjct: 111 QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIAFCNTDSPLRFVDIAIPCNTKSSHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD 136
           IGLMWWLLAREVLR RG +PR+ +WDVVVDLFFYRDPEE+EKEEQ  KE A   A KP  
Sbjct: 171 IGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKEEQQAKEQAVVPA-KPDV 229

Query: 137 EFAAHAPTESWNDT--PILS 154
               H   E WN+T  P++S
Sbjct: 230 PPPVH---EDWNETVEPVVS 246

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|318087148|gb|ADV40166.1| putative ribosomal protein SA [Latrodectus hesperus]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/132 (73%), Positives = 109/132 (82%), Gaps = 6/132 (4%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLLVVTDP  DHQP+TEA+YVNIPVIAFCNT+SPLR+VDIAIPCNNK  HS
Sbjct: 111 QIQAAFREPRLLVVTDPRIDHQPLTEASYVNIPVIAFCNTDSPLRYVDIAIPCNNKGAHS 170

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD 136
           IGLMWW+LAREVLR RGTI RE KWDV+VDL+FYRDPE+AEKEEQA  +S     ++P  
Sbjct: 171 IGLMWWMLAREVLRMRGTISRELKWDVMVDLYFYRDPEDAEKEEQAAVQS-----ERPVK 225

Query: 137 EFAAHAPTESWN 148
           E AA   +E W 
Sbjct: 226 E-AADIQSEPWG 236

Source: Latrodectus hesperus

Species: Latrodectus hesperus

Genus: Latrodectus

Family: Theridiidae

Order: Araneae

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17298117|dbj|BAB78527.1| ribosome-associated protein P40 [Bombyx mori]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/138 (72%), Positives = 109/138 (78%), Gaps = 5/138 (3%)

Query: 13  FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
           F N Q QAAFREPRLL+V DP  DHQPITEA+YVNIPVIA CNT+SPLRFVDIAIPCN K
Sbjct: 108 FTN-QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 166

Query: 73  SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIAD 132
           S HSIGLMWWLLAREVLR RG +PR+ +WDVVVDLFFYRDPEE+EK+EQ  KE A   A 
Sbjct: 167 SSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQAVVPA- 225

Query: 133 KPADEFAAHAPTESWNDT 150
           KP      H   E WN+T
Sbjct: 226 KPEVVAPVH---EDWNET 240

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|162952033|ref|NP_001106143.1| 40S ribosomal protein SA [Bombyx mori] gi|74904851|sp|Q5UAP4.1|RSSA_BOMMO RecName: Full=40S ribosomal protein SA gi|54609281|gb|AAV34856.1| ribosomal protein SA [Bombyx mori]

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 99/138 (71%), Positives = 109/138 (78%), Gaps = 5/138 (3%)

Query: 13  FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
           F N Q QAAFREPRLL+V DP  DHQPITEA+YVNIPVIA CNT+SPLRFVDIAIPCN K
Sbjct: 108 FTN-QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 166

Query: 73  SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIAD 132
           S HSIGLMWWLLAREVLR RG +PR+ +WDVVV+LFFYRDPEE+EK+EQ  KE A   A 
Sbjct: 167 SSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVELFFYRDPEESEKDEQQAKEQAVVPA- 225

Query: 133 KPADEFAAHAPTESWNDT 150
           KP      H   E WN+T
Sbjct: 226 KPEVVAPVH---EDWNET 240

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
UNIPROTKB|Q6P8D1	306	rpsa "40S ribosomal protein SA	0.383	0.326	0.772	2.6e-47
UNIPROTKB|E2RJ06	314	RPSA "Uncharacterized protein"	0.383	0.318	0.762	3.3e-47
FB|FBgn0003517	313	sta "stubarista" [Drosophila m	0.383	0.319	0.821	6e-46
UNIPROTKB|P50890	296	RPSA "40S ribosomal protein SA	0.383	0.337	0.772	2.6e-45
UNIPROTKB|F1SJR1	211	F1SJR1 "Uncharacterized protei	0.383	0.473	0.762	4.1e-45
UNIPROTKB|Q4GWZ2	295	RPSA "40S ribosomal protein SA	0.383	0.338	0.762	4.1e-45
UNIPROTKB|A6YRY8	295	RPSA "40S ribosomal protein SA	0.383	0.338	0.762	1.4e-44
UNIPROTKB|C9J9K3	264	RPSA "40S ribosomal protein SA	0.383	0.378	0.762	1.4e-44
UNIPROTKB|J9JHJ2	295	RPSA "Uncharacterized protein"	0.383	0.338	0.762	3.7e-44
UNIPROTKB|Q2L9X0	295	RPSA "40S ribosomal protein SA	0.383	0.338	0.762	3.7e-44

UNIPROTKB|Q6P8D1 rpsa "40S ribosomal protein SA" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 431 (156.8 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
 Identities = 78/101 (77%), Positives = 87/101 (86%)

Query:    13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
             F N Q QAAFREPRLLVVTDP  DHQP+TEA+YVNIP IA CNT+SPLR+VDIAIPCNNK
Sbjct:   108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNK 166

Query:    73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
               HS+GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDP
Sbjct:   167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006407 "rRNA export from nucleus" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

UNIPROTKB|E2RJ06 RPSA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 429 (156.1 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 77/101 (76%), Positives = 87/101 (86%)

Query:    13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
             F N Q QAAFREPRLLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct:   108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166

Query:    73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
               HS+GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDP
Sbjct:   167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

FB|FBgn0003517 sta "stubarista" [Drosophila melanogaster (taxid:7227)]

 Score = 440 (159.9 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 83/101 (82%), Positives = 89/101 (88%)

Query:    13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
             F N Q Q AFREPRLLVVTDP+TDHQPI EA+YVNIPVIAF NT+SPLR++DIAIPCNNK
Sbjct:   151 FTN-QIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNK 209

Query:    73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
             S HSIGLMWWLLAREVLR RGTI R  +W VVVDLFFYRDP
Sbjct:   210 SAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYRDP 250

GO:0003735 "structural constituent of ribosome" evidence=ISS;IBA;IDA;NAS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IBA;NAS

GO:0006412 "translation" evidence=ISS;IBA;NAS

GO:0043022 "ribosome binding" evidence=IPI

GO:0005840 "ribosome" evidence=NAS;IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0006407 "rRNA export from nucleus" evidence=IBA

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0030686 "90S preribosome" evidence=IBA

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

UNIPROTKB|P50890 RPSA "40S ribosomal protein SA" [Gallus gallus (taxid:9031)]

 Score = 431 (156.8 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
 Identities = 78/101 (77%), Positives = 87/101 (86%)

Query:    13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
             F N Q QAAFREPRLLVVTDP  DHQP+TEA+YVNIP IA CNT+SPLR+VDIAIPCNNK
Sbjct:   108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNK 166

Query:    73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
               HS+GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDP
Sbjct:   167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IBA

GO:0006407 "rRNA export from nucleus" evidence=IBA

GO:0006412 "translation" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0030686 "90S preribosome" evidence=IBA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0043236 "laminin binding" evidence=ISS

UNIPROTKB|F1SJR1 F1SJR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 429 (156.1 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 77/101 (76%), Positives = 87/101 (86%)

Query:    13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
             F N Q QAAFREPRLLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct:    24 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 82

Query:    73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
               HS+GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDP
Sbjct:    83 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 123

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q4GWZ2 RPSA "40S ribosomal protein SA" [Sus scrofa (taxid:9823)]

 Score = 429 (156.1 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 77/101 (76%), Positives = 87/101 (86%)

Query:    13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
             F N Q QAAFREPRLLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct:   108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166

Query:    73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
               HS+GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDP
Sbjct:   167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207

GO:0005886 "plasma membrane" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|A6YRY8 RPSA "40S ribosomal protein SA" [Ovis aries (taxid:9940)]

 Score = 429 (156.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 77/101 (76%), Positives = 87/101 (86%)

Query:    13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
             F N Q QAAFREPRLLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct:   108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166

Query:    73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
               HS+GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDP
Sbjct:   167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

UNIPROTKB|C9J9K3 RPSA "40S ribosomal protein SA" [Homo sapiens (taxid:9606)]

 Score = 429 (156.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 77/101 (76%), Positives = 87/101 (86%)

Query:    13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
             F N Q QAAFREPRLLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct:   108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166

Query:    73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
               HS+GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDP
Sbjct:   167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

UNIPROTKB|J9JHJ2 RPSA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 429 (156.1 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
 Identities = 77/101 (76%), Positives = 87/101 (86%)

Query:    13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
             F N Q QAAFREPRLLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct:   108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166

Query:    73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
               HS+GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDP
Sbjct:   167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q2L9X0 RPSA "40S ribosomal protein SA" [Chlorocebus aethiops (taxid:9534)]

 Score = 429 (156.1 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
 Identities = 77/101 (76%), Positives = 87/101 (86%)

Query:    13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
             F N Q QAAFREPRLLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct:   108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166

Query:    73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
               HS+GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDP
Sbjct:   167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207

GO:0005886 "plasma membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P50890	RSSA_CHICK	No assigned EC number	0.7	0.4750	0.4189	yes	N/A
B5FXT6	RSSA_TAEGU	No assigned EC number	0.7	0.4750	0.4189	yes	N/A
P38982	RSSA_CRIGR	No assigned EC number	0.6766	0.4865	0.4305	yes	N/A
P38983	RSSA_RAT	No assigned EC number	0.6842	0.4865	0.4305	yes	N/A
P14206	RSSA_MOUSE	No assigned EC number	0.6842	0.4865	0.4305	yes	N/A
Q08682	RSSA1_ARATH	No assigned EC number	0.5934	0.4712	0.4127	yes	N/A
Q6P8D1	RSSA_XENTR	No assigned EC number	0.4489	0.7471	0.6372	yes	N/A
P26452	RSSA_BOVIN	No assigned EC number	0.6842	0.4865	0.4305	yes	N/A
Q7PZ81	RSSA_ANOGA	No assigned EC number	0.6616	0.5019	0.4596	yes	N/A
Q0PXX8	RSSA_DIACI	No assigned EC number	0.7469	0.7318	0.6345	N/A	N/A
Q4GWZ2	RSSA_PIG	No assigned EC number	0.6842	0.4865	0.4305	yes	N/A
P08865	RSSA_HUMAN	No assigned EC number	0.6842	0.4865	0.4305	yes	N/A
Q803F6	RSSA_DANRE	No assigned EC number	0.7610	0.4329	0.3668	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	261
PTZ00254	249	PTZ00254, PTZ00254, 40S ribosomal protein SA; Prov	3e-69
TIGR01012	196	TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosol	4e-53
cd01425	193	cd01425, RPS2, Ribosomal protein S2 (RPS2), involv	5e-35
PRK04020	204	PRK04020, rps2P, 30S ribosomal protein S2; Provisi	5e-32
pfam00318	205	pfam00318, Ribosomal_S2, Ribosomal protein S2	6e-32
COG0052	252	COG0052, RpsB, Ribosomal protein S2 [Translation,	8e-31
TIGR01011	225	TIGR01011, rpsB_bact, ribosomal protein S2, bacter	4e-10
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	3e-09

>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional

 Score =  213 bits (544), Expect = 3e-69
 Identities = 86/150 (57%), Positives = 103/150 (68%), Gaps = 6/150 (4%)

Query: 5   SSRTGLFI---FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLR 61
           S+  G F    F N Q Q  F EPRLL+VTDP TDHQ I EA+YVNIPVIA C+T+SPL 
Sbjct: 97  SAIAGRFTPGTFTN-QIQKKFMEPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDSPLE 155

Query: 62  FVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQ 121
           +VDIAIPCNN+   SI LM+WLLAREVLR RGT+PR+ +WDV+VDLFF+RDPEEAE++E+
Sbjct: 156 YVDIAIPCNNRGKESIALMYWLLAREVLRLRGTLPRDEEWDVMVDLFFWRDPEEAEEKEE 215

Query: 122 AGKESAAAIADKPADEFAAHAPTESWNDTP 151
           A  E+A       A         E W    
Sbjct: 216 AAAETAGVEDAAAAAA--EAEEGEEWVAAA 243

Length = 249

>gnl|CDD|188101 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosolic)/S2(archaeal)

 Score =  170 bits (433), Expect = 4e-53
 Identities = 60/108 (55%), Positives = 79/108 (73%), Gaps = 4/108 (3%)

Query: 8   TGLFI---FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVD 64
            G F    F N   Q +FREP ++VVTDP  DHQ + EA+ V IP++A C+T++PLR+VD
Sbjct: 90  AGRFTPGTFTN-PMQKSFREPEVVVVTDPRADHQAVKEASEVGIPIVALCDTDNPLRYVD 148

Query: 65  IAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRD 112
           + IP NNK   S+ L++WLLARE+LR RGTI  + KWDV+V+LFFYRD
Sbjct: 149 LVIPTNNKGRRSLALIYWLLAREILRMRGTISPDQKWDVMVELFFYRD 196

This model describes the ribosomal protein of the cytosol and of Archaea, homologous to S2 of bacteria. It is designated typically as Sa in eukaryotes and Sa or S2 in the archaea. TIGR01011 describes the related protein of organelles and bacteria [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 196

>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome

 Score =  123 bits (312), Expect = 5e-35
 Identities = 32/69 (46%), Positives = 42/69 (60%)

Query: 22  FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
           FR P L++V DP  +HQ I EA+ + IPVIA  +T      +D  IP N+ S  SI L+ 
Sbjct: 125 FRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDSIRSIALIL 184

Query: 82  WLLAREVLR 90
           WLLAR +L 
Sbjct: 185 WLLARAILE 193

It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane and subsequent signalling events, and has been linked to several diseases. Some evidence also suggests that the precursor of 67LR, 37LRP is also present in the nucleus in animals, where it appears associated with histones. Length = 193

>gnl|CDD|235201 PRK04020, rps2P, 30S ribosomal protein S2; Provisional

 Score =  116 bits (293), Expect = 5e-32
 Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 8/108 (7%)

Query: 6   SRTGLFI-----FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPL 60
           + TG FI      P+L+    + EP ++VVTDP  D Q + EA  V IPV+A C+T++  
Sbjct: 94  AITGRFIPGTLTNPSLKG---YIEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLT 150

Query: 61  RFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLF 108
             VD+ IP NNK   ++ L++WLLARE+LR RG I  +    V V+ F
Sbjct: 151 SNVDLVIPTNNKGRKALALVYWLLAREILRERGEIKPDEDLPVPVEDF 198

Length = 204

>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2

 Score =  116 bits (292), Expect = 6e-32
 Identities = 30/70 (42%), Positives = 42/70 (60%)

Query: 23  REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWW 82
           + P L++V DP+ +H  I EA+ + IPVIA  +T      +D  IP N+ S  SI L+ W
Sbjct: 136 KLPDLVIVVDPNKEHIAIKEASKLGIPVIAIVDTNCDPDLIDYPIPGNDDSIRSIALILW 195

Query: 83  LLAREVLRFR 92
           LLAR +L  R
Sbjct: 196 LLARAILEGR 205

Length = 205

>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]

 Score =  114 bits (288), Expect = 8e-31
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 23  REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWW 82
             P +L V DP  +   + EA  + IPV+A  +T      VD  IP N+ +  SI L++W
Sbjct: 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYW 214

Query: 83  LLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAG 123
           LLAR +L  RG    E +  +  D       E   KEE A 
Sbjct: 215 LLARAILEGRGGALDEEEAAIEEDEEV---EEFEAKEEAAE 252

Length = 252

>gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 25/69 (36%), Positives = 35/69 (50%)

Query: 25  PRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 84
           P LL V DP  +   + EA  + IPV+A  +T      VD  IP N+ +  SI L+  L+
Sbjct: 156 PDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLI 215

Query: 85  AREVLRFRG 93
           A  VL  + 
Sbjct: 216 ADAVLEGKQ 224

This model describes the bacterial, ribosomal, and chloroplast forms of ribosomal protein S2. TIGR01012 describes the archaeal and cytosolic forms [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 225

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 4/105 (3%)

Query: 25  PRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 84
           P  L V DP+ +H  + EA  + IPV+A  +T      VD  IP N+ +  SI L    +
Sbjct: 158 PDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKI 217

Query: 85  AREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAA 129
           A  +L  R         +   +     + EE E+EE+  +E+ A 
Sbjct: 218 ADAILEGRQ----GRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG0830|consensus	254		100.0
PTZ00254	249	40S ribosomal protein SA; Provisional	100.0
TIGR01012	196	Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archa	100.0
PRK04020	204	rps2P 30S ribosomal protein S2; Provisional	100.0
COG0052	252	RpsB Ribosomal protein S2 [Translation, ribosomal	99.95
PRK12311	326	rpsB 30S ribosomal protein S2/unknown domain fusio	99.93
PRK05299	258	rpsB 30S ribosomal protein S2; Provisional	99.92
TIGR01011	225	rpsB_bact ribosomal protein S2, bacterial type. TI	99.92
cd01425	193	RPS2 Ribosomal protein S2 (RPS2), involved in form	99.92
CHL00067	230	rps2 ribosomal protein S2	99.91
PF00318	211	Ribosomal_S2: Ribosomal protein S2; InterPro: IPR0	99.87
KOG0832|consensus	251		99.73

>KOG0830|consensus

Probab=100.00  E-value=1e-53  Score=384.84  Aligned_cols=146  Identities=62%  Similarity=1.088  Sum_probs=135.2

Q ss_pred             cccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHH
Q psy9845           4 LSSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW   81 (261)
Q Consensus         4 ~~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~   81 (261)
                      -.||.|||.|  ||||||++|+|||||||||||.|||+|+|+||+|+|||+||||||+|+||||+|||||||.|||++||
T Consensus        67 atpiag~ftpg~ftn~iq~~f~epr~lvvtdpr~d~q~~~E~s~~n~p~ialcnTDSpL~~VDIAIPcNNKG~hSVgl~w  146 (254)
T KOG0830|consen   67 ATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLCYVDIAIPCNNKGAHSVGVMW  146 (254)
T ss_pred             CCcccccccccccchHHHHhhcCCceeeecCcccccchhhhhhhcCCceEEEecCCCccceeeeeeecCCCCcccchhhh
Confidence            3589999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCC-CCCcccccccccccCchhhhhhhHhhhhhhhhhhc------CCccccccCCCC-CCCCC
Q psy9845          82 WLLAREVLRFRGTIPR-EPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIAD------KPADEFAAHAPT-ESWND  149 (261)
Q Consensus        82 wlLAreVLr~rGtIs~-e~pWEVmPDLyFYRDPEEiEKEeqaaae~a~~~~~------~~~~e~~~~~~~-~~w~~  149 (261)
                      |||+|+||+|||+|++ .|+|++||||||||||||+|||||+++++++++++      +++++|+++++. .+|..
T Consensus       147 w~LareVLrmrgtis~~~~~~~~m~dl~FyrDpeE~e~eeqAa~~ka~t~eefqge~ta~a~eftatq~~vadw~e  222 (254)
T KOG0830|consen  147 WMLAREVLRMRGTISRLQHPWEVMPDLYFYRDPEETEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSE  222 (254)
T ss_pred             hhhhHHHHHHHhhhhhhccchhhcCCcccccCccccchhhhcccchhhcccccccccccCCccccccCcccccccc
Confidence            9999999999999997 99999999999999999999999999999887653      667788766554 45543

>PTZ00254 40S ribosomal protein SA; Provisional

Probab=100.00  E-value=5.3e-50  Score=361.69  Aligned_cols=125  Identities=65%  Similarity=1.093  Sum_probs=120.9

Q ss_pred             cccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHH
Q psy9845           4 LSSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW   81 (261)
Q Consensus         4 ~~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~   81 (261)
                      -.||.|||+|  |||+++..|++||||||+||+.|||||+||+|+||||||||||||+|++|||+|||||||.+||+|||
T Consensus        96 ~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP~Ndds~~SI~li~  175 (249)
T PTZ00254         96 ASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIALMY  175 (249)
T ss_pred             CeEECCcccCCCCCCccccccCCCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCCCcccCceeeCCCCchHHHHHHHH
Confidence            4689999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCCcccccccccccCchhhhhhhHhhhhhhh
Q psy9845          82 WLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAA  128 (261)
Q Consensus        82 wlLAreVLr~rGtIs~e~pWEVmPDLyFYRDPEEiEKEeqaaae~a~  128 (261)
                      |+|+|+||++||+|+++++|+|||||||||||||+||||+++++++.
T Consensus       176 ~lLar~Vl~~rG~~~r~~~~~v~~d~f~~r~~~~~~~~~~~~~~~~~  222 (249)
T PTZ00254        176 WLLAREVLRLRGTLPRDEEWDVMVDLFFWRDPEEAEEKEEAAAETAG  222 (249)
T ss_pred             HHHHHHHHHhhCccccCCCCCcCceeccccChhhhhhHHHHHHhhcc
Confidence            99999999999999999999999999999999999999998877543

>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal)

Probab=100.00  E-value=3.2e-40  Score=289.01  Aligned_cols=109  Identities=53%  Similarity=0.988  Sum_probs=107.0

Q ss_pred             cccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHH
Q psy9845           4 LSSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW   81 (261)
Q Consensus         4 ~~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~   81 (261)
                      -.|++|||+|  |||+.+..|++|++|||+||+.|+|||+||+++||||||||||||+|++|||+|||||||.+||+|++
T Consensus        86 ~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~~Si~li~  165 (196)
T TIGR01012        86 ARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRHSLALIY  165 (196)
T ss_pred             CceECCeeCCCCCCCccccccCCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchHHHHHHHH
Confidence            4689999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCCcccccccccccC
Q psy9845          82 WLLAREVLRFRGTIPREPKWDVVVDLFFYRD  112 (261)
Q Consensus        82 wlLAreVLr~rGtIs~e~pWEVmPDLyFYRD  112 (261)
                      |+|+++||++||+++++++|+||||+|||||
T Consensus       166 ~lla~ail~~~g~~~~~~~~~~~~d~f~~~~  196 (196)
T TIGR01012       166 WLLAREILRMRGTISRDQDWDVMYEEFFYRD  196 (196)
T ss_pred             HHHHHHHHHhhCccCCCCCCccChhhhcccC
Confidence            9999999999999999999999999999997

TIGR01011 describes the related protein of organelles and bacteria.

>PRK04020 rps2P 30S ribosomal protein S2; Provisional

Probab=100.00  E-value=1.3e-36  Score=267.76  Aligned_cols=109  Identities=40%  Similarity=0.609  Sum_probs=106.4

Q ss_pred             cccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHH
Q psy9845           4 LSSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW   81 (261)
Q Consensus         4 ~~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~   81 (261)
                      -.|++|||+|  |||+....|.+|++|||+||+.||+||+||+++||||||||||||+|++|||+|||||||.+||+|++
T Consensus        92 ~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp~~VdypIP~Ndds~~SI~li~  171 (204)
T PRK04020         92 AKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALALVY  171 (204)
T ss_pred             CeeecCccCCCcCcCcchhccCCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCCcccCceeECCCCchHHHHHHHH
Confidence            4689999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCCcccccccccccC
Q psy9845          82 WLLAREVLRFRGTIPREPKWDVVVDLFFYRD  112 (261)
Q Consensus        82 wlLAreVLr~rGtIs~e~pWEVmPDLyFYRD  112 (261)
                      |+|+++|+++||+++++++|+||+|+|++|.
T Consensus       172 ~ll~~aIl~~kg~~~~~~~~~v~~~~f~~~~  202 (204)
T PRK04020        172 WLLAREILRERGEIKPDEDLPVPVEDFETKL  202 (204)
T ss_pred             HHHHHHHHHhhCccCCCCCCCcCHHHHhhhh
Confidence            9999999999999999999999999999875

>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=5e-29  Score=225.99  Aligned_cols=77  Identities=36%  Similarity=0.580  Sum_probs=72.7

Q ss_pred             hcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhhCCC
Q psy9845          19 QAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTI   95 (261)
Q Consensus        19 QaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~rGtI   95 (261)
                      +.|.+.|++|||+||+.|+|||.||.++||||||||||||+|++|||+||||||+.+||.|++|+|+++|++++|..
T Consensus       151 k~m~~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~Ndda~rsi~Li~~~lA~ai~e~r~~~  227 (252)
T COG0052         151 KDMKGLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRGGA  227 (252)
T ss_pred             hhccCCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCCccCceeecCCChHHHHHHHHHHHHHHHHHHHhccc
Confidence            33455699999999999999999999999999999999999999999999999999999999999999999999854

>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional

Probab=99.93  E-value=5.3e-26  Score=212.11  Aligned_cols=73  Identities=27%  Similarity=0.328  Sum_probs=70.6

Q ss_pred             ccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhhC
Q psy9845          21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRG   93 (261)
Q Consensus        21 aFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~rG   93 (261)
                      |.++|++|||+||+.|++||+||.++||||||||||||+|++|||||||||||.+||.|++|+|+++|+.++.
T Consensus       149 m~~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~dp~~IdypIP~NDds~~si~li~~~la~ai~~g~~  221 (326)
T PRK12311        149 MGGLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAIDGIS  221 (326)
T ss_pred             cccCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCCccccceeecCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            4469999999999999999999999999999999999999999999999999999999999999999999985

>PRK05299 rpsB 30S ribosomal protein S2; Provisional

Probab=99.92  E-value=9.5e-26  Score=203.82  Aligned_cols=74  Identities=32%  Similarity=0.383  Sum_probs=71.7

Q ss_pred             ccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhhCC
Q psy9845          21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGT   94 (261)
Q Consensus        21 aFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~rGt   94 (261)
                      |.++|++|||+||..|++||+||.++||||||||||||+|++|||||||||||.+||.|++|+|+++|++++|.
T Consensus       154 m~~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp~~IdypIP~Ndds~~si~li~~~l~~ai~~g~~~  227 (258)
T PRK05299        154 MGGLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGRQG  227 (258)
T ss_pred             cccCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhhc
Confidence            44799999999999999999999999999999999999999999999999999999999999999999999984

>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type

Probab=99.92  E-value=1.3e-25  Score=198.98  Aligned_cols=73  Identities=34%  Similarity=0.468  Sum_probs=70.7

Q ss_pred             ccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhhC
Q psy9845          21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRG   93 (261)
Q Consensus        21 aFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~rG   93 (261)
                      |.++|++|||+||..|++||+||.++||||||||||||+|++|||||||||||.+||.|++|+|+++|+++++
T Consensus       152 m~~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~g~~  224 (225)
T TIGR01011       152 MKKLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGKQ  224 (225)
T ss_pred             cccCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhc
Confidence            4479999999999999999999999999999999999999999999999999999999999999999999975

TIGR01012 describes the archaeal and cytosolic forms.

>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome

Probab=99.92  E-value=1.8e-25  Score=192.35  Aligned_cols=87  Identities=38%  Similarity=0.576  Sum_probs=82.1

Q ss_pred             cccccccccc--Cchhhhc------------------------ccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCC
Q psy9845           4 LSSRTGLFIF--PNLQFQA------------------------AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTE   57 (261)
Q Consensus         4 ~~~i~Grfip--lTNQIQa------------------------aFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTD   57 (261)
                      -.++.+||++  |||..+.                        ++++|++|||+||..|+++|+||+++|||||||||||
T Consensus        81 ~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn  160 (193)
T cd01425          81 SFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN  160 (193)
T ss_pred             CeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence            3578999998  9997643                        8999999999999999999999999999999999999


Q ss_pred             CCCCcceeeccCCCCCcchHHHHHHHHHHHHHH
Q psy9845          58 SPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLR   90 (261)
Q Consensus        58 SpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr   90 (261)
                      +++++|||||||||||.+|+.|++|+|+++|++
T Consensus       161 ~~~~~i~ypIP~Nd~s~~si~li~~~l~~ai~~  193 (193)
T cd01425         161 CDPDLIDYPIPANDDSIRSIALILWLLARAILE  193 (193)
T ss_pred             CCCccceEEeecCCchHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999974

It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an

>CHL00067 rps2 ribosomal protein S2

Probab=99.91  E-value=1.3e-24  Score=193.01  Aligned_cols=72  Identities=24%  Similarity=0.391  Sum_probs=69.6

Q ss_pred             ccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhh
Q psy9845          21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFR   92 (261)
Q Consensus        21 aFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~r   92 (261)
                      |.++|++|||+||..|++||+||.++|||||||||||++|++|||+|||||||.+||.|++++|+++|++++
T Consensus       158 m~~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~G~  229 (230)
T CHL00067        158 MTKLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIPIPANDDAIASIKLILNKLTTAICEGR  229 (230)
T ss_pred             cccCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCccccceeeecCCchHHHHHHHHHHHHHHHHHhc
Confidence            447999999999999999999999999999999999999999999999999999999999999999999875

>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.87  E-value=1.4e-22  Score=176.77  Aligned_cols=73  Identities=34%  Similarity=0.528  Sum_probs=66.7

Q ss_pred             cccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhh
Q psy9845          20 AAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFR   92 (261)
Q Consensus        20 aaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~r   92 (261)
                      .+.+.|++|||+||..|+++|+||.++|||||||||||+++++|||||||||||..||.|++++|+++|+++|
T Consensus       139 ~l~~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~~~~~i~ypIp~N~~s~~si~~i~~~l~~ai~~g~  211 (211)
T PF00318_consen  139 NLKKLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNCNPSLIDYPIPANDDSIKSIYLILNLLAKAILEGK  211 (211)
T ss_dssp             TCSSSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS-GTTSSEEEES-SSSHHHHHHHHHHHHHHHHHTC
T ss_pred             cccccCcEEEEecccccchhHHHHHhcCceEEEeecCCCCccccceEeecCCccHHHHHHHHHHHHHHHHhcC
Confidence            3456799999999999999999999999999999999999999999999999999999999999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....

>KOG0832|consensus

Probab=99.73  E-value=6.4e-18  Score=153.15  Aligned_cols=70  Identities=33%  Similarity=0.568  Sum_probs=67.4

Q ss_pred             CCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhhC
Q psy9845          24 EPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRG   93 (261)
Q Consensus        24 EPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~rG   93 (261)
                      .||+|||.|+..+|.||+||++++||||||+||||+|++|+||||+|||+..|+.|++.+|.++|.+++.
T Consensus       173 ~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~~P~liTYpVPaNDDs~~sv~f~~~l~k~ai~~g~~  242 (251)
T KOG0832|consen  173 TPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNCNPELITYPVPANDDSPASVEFILNLLKRAIARGKQ  242 (251)
T ss_pred             CcceeEecCcccccHHHHHHHHhCCCeEEEecCCCCccceeeccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999999999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	261
3bch_A	253	Crystal Structure Of The Human Laminin Receptor Pre		4e-44
2zkq_b	295	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-43
3zey_C	277	High-resolution Cryo-electron Microscopy Structure		2e-39
3iz6_A	305	Localization Of The Small Subunit Ribosomal Protein		4e-35
3izb_A	252	Localization Of The Small Subunit Ribosomal Protein		1e-30
2xzm_B	241	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-28
3jyv_B	193	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-26
1s1h_B	185	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		9e-26
3j20_B	202	Promiscuous Behavior Of Proteins In Archaeal Riboso		3e-18
1vi5_A	208	Crystal Structure Of Ribosomal Protein S2p Length =		2e-14
1vi6_A	208	Crystal Structure Of Ribosomal Protein S2p Length =		2e-14

>pdb|3BCH|A Chain A, Crystal Structure Of The Human Laminin Receptor Precursor Length = 253

Iteration: 1
 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 75/97 (77%), Positives = 85/97 (87%)
Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK  HS
Sbjct: 144 QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHS 203
Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
           +GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDP
Sbjct: 204 VGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 240

>pdb|2ZKQ|BB Chain b, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 295

Iteration: 1
 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 75/97 (77%), Positives = 85/97 (87%)
Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q QAAFREPRLLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK  HS
Sbjct: 111 QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHS 170
Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
           +GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDP
Sbjct: 171 VGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207

>pdb|3ZEY|C Chain C, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 277

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 88/116 (75%), Gaps = 4/116 (3%)
Query: 1   MISLSSRTGLFI---FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTE 57
           ++  S   G FI   F N Q Q  F +PR+LVVTDP TDHQ + EA+ VNIPVIAFC+T+
Sbjct: 129 LVGTSFLGGRFIPGTFTN-QIQKKFMQPRVLVVTDPRTDHQALREASLVNIPVIAFCDTD 187
Query: 58  SPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
           +PL FVDIAIPCNN+  HSI +M+WLLAREVLR RGTIPR   W+V VDLFFYRDP
Sbjct: 188 APLEFVDIAIPCNNRGRHSISMMYWLLAREVLRLRGTIPRSVPWEVKVDLFFYRDP 243

>pdb|3IZ6|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 305

Iteration: 1
 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 77/97 (79%)
Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
           Q Q +F EPRLL++TDP TDHQPI E+A  NIP IAFC+T+SP+R+VDI IP NNK   S
Sbjct: 115 QLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQS 174
Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
           IG ++WLLAR VL+ RGTI    KWDV+VDLFFYRDP
Sbjct: 175 IGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211

>pdb|3IZB|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 252

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/94 (61%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 21  AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLM 80
           +F+EPRL++VTDP +D Q I EA+YVNIPVIA  + +SP  FVD+AIPCNN+  HSIGL+
Sbjct: 114 SFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLI 173
Query: 81  WWLLAREVLRFRGT-IPREPKWDVVVDLFFYRDP 113
           W+LLAREVLR RG  + R   W ++ DL+FYRDP
Sbjct: 174 WYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDP 207

>pdb|2XZM|B Chain B, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 241

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 73/90 (81%)
Query: 22  FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
           + EPR+L+VTDP +D Q I EA+YVNIPVIA C+++SPL +VD+ IPCNN+S  SI +++
Sbjct: 112 YEEPRVLIVTDPRSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNNRSTESISMIY 171
Query: 82  WLLAREVLRFRGTIPREPKWDVVVDLFFYR 111
           W++AREV   RG + ++ +W+V+VDLF+++
Sbjct: 172 WMIAREVKILRGELSKDEEWEVMVDLFYHK 201

>pdb|3JYV|B Chain B, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 193

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
Query: 21  AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLM 80
           +F+EPRL++VTDP +D Q I EA+YVNIPVIA  + +SP  FVD+AIPCNN+  HSIGL+
Sbjct: 106 SFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLI 165
Query: 81  WWLLAREVLRFRGT-IPREPKWDVVVDL 107
           W+LLAREVLR RG  + R   W ++ DL
Sbjct: 166 WYLLAREVLRLRGALVDRTQPWSIMPDL 193

>pdb|1S1H|B Chain B, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 185

Iteration: 1
 Score =  113 bits (283), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Query: 21  AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLM 80
           +F+EPRL++VTDP +D Q I EA+YVNIPVIA  + +SP  FVD+AIPCNN+  HSIGL+
Sbjct: 101 SFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLI 160
Query: 81  WWLLAREVLRFRGT-IPREPKWDVV 104
           W+LLAREVLR RG  + R   W ++
Sbjct: 161 WYLLAREVLRLRGALVDRTQPWSIM 185

>pdb|3J20|B Chain B, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 202

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 58/87 (66%)
Query: 22  FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
           F EP +L+VTDP  DHQ + EA  + IP++A  +TE+ L +VD+AIP NNK   ++ L++
Sbjct: 109 FFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIY 168
Query: 82  WLLAREVLRFRGTIPREPKWDVVVDLF 108
           W+LARE+L  RG I     + + V+ F
Sbjct: 169 WILAREILYNRGEIQSREDFKIPVEEF 195

>pdb|1VI5|A Chain A, Crystal Structure Of Ribosomal Protein S2p Length = 208

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 48/72 (66%)
Query: 22  FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
           +REP ++ V DP  D Q ++EA  V IPV+A C++ +    VD+ IP NNK   ++ +++
Sbjct: 113 YREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVY 172
Query: 82  WLLAREVLRFRG 93
           WLLARE+ + RG
Sbjct: 173 WLLAREIAKIRG 184

>pdb|1VI6|A Chain A, Crystal Structure Of Ribosomal Protein S2p Length = 208

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 48/72 (66%)
Query: 22  FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
           +REP ++ V DP  D Q ++EA  V IPV+A C++ +    VD+ IP NNK   ++ +++
Sbjct: 113 YREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVY 172
Query: 82  WLLAREVLRFRG 93
           WLLARE+ + RG
Sbjct: 173 WLLAREIAKIRG 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
2xzm_B	241	RPS0E; ribosome, translation; 3.93A {Tetrahymena t	1e-54
3bch_A	253	40S ribosomal protein SA; laminin receptor, P40 ri	1e-52
3u5c_A	252	40S ribosomal protein S0-A; translation, ribosome,	2e-51
1vi6_A	208	30S ribosomal protein S2P; structural genomics, ri	4e-48
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	7e-48
2zkq_b	295	40S ribosomal protein SA; protein-RNA complex, 40S	3e-45
2vqe_B	256	30S ribosomal protein S2; tRNA-binding, rRNA-bindi	4e-07
3bbn_B	231	Ribosomal protein S2; small ribosomal subunit, spi	1e-05
3r8n_B	218	30S ribosomal protein S2; protein biosynthesis, RN	4e-05

>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B Length = 241

 Score =  175 bits (445), Expect = 1e-54
 Identities = 57/132 (43%), Positives = 88/132 (66%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
                + EPR+L+VTDP +D Q I EA+YVNIPVIA C+++SPL +VD+ IPCNN+S  S
Sbjct: 107 YQTLKYEEPRVLIVTDPRSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNNRSTES 166

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD 136
           I +++W++AREV   RG + ++ +W+V+VDLF+++    AE++E   +E A    +K A+
Sbjct: 167 ISMIYWMIAREVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAE 226

Query: 137 EFAAHAPTESWN 148
                A   + N
Sbjct: 227 VKEGEAEQNTDN 238

>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Length = 253

 Score =  170 bits (432), Expect = 1e-52
 Identities = 86/115 (74%), Positives = 96/115 (83%), Gaps = 1/115 (0%)

Query: 11  FIFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCN 70
             F N Q QAAFREPRLLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCN
Sbjct: 139 GTFTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN 197

Query: 71  NKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKE 125
           NK  HS+GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDPEE EKEEQA  E
Sbjct: 198 NKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAE 252

>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Length = 252

 Score =  167 bits (424), Expect = 2e-51
 Identities = 67/142 (47%), Positives = 90/142 (63%), Gaps = 3/142 (2%)

Query: 12  IFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNN 71
            F N     +F+EPRL++VTDP +D Q I EA+YVNIPVIA  + +SP  FVD+AIPCNN
Sbjct: 106 SFTN-YITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNN 164

Query: 72  KSPHSIGLMWWLLAREVLRFRGTI-PREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAI 130
           +  HSIGL+W+LLAREVLR RG +  R   W ++ DL+FYRDPEE E++      +  A 
Sbjct: 165 RGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAG 224

Query: 131 ADKPADEFA-AHAPTESWNDTP 151
            ++  +E     A    W +  
Sbjct: 225 EEEAKEEVTEEQAEATEWAEEN 246

>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Length = 208

 Score =  157 bits (399), Expect = 4e-48
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
              + +REP ++ V DP  D Q ++EA  V IPV+A C++ +    VD+ IP NNK   +
Sbjct: 108 PMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRA 167

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEE 120
           + +++WLLARE+ + RG        D   +L        +    
Sbjct: 168 LAIVYWLLAREIAKIRGQDFTYSIEDFEAEL-----EGGSHHHH 206

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score =  159 bits (404), Expect = 7e-48
 Identities = 94/208 (45%), Positives = 115/208 (55%), Gaps = 14/208 (6%)

Query: 12  IFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNN 71
            F N Q Q +F EPRLL++TDP TDHQPI E+A  NIP IAFC+T+SP+R+VDI IP NN
Sbjct: 111 TFTN-QLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANN 169

Query: 72  KSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIA 131
           K   SIG ++WLLAR VL+ RGTI    KWDV+VDLFFYRDPEEA+++E+   E+A    
Sbjct: 170 KGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE--EAALVAP 227

Query: 132 DKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDE 191
           D  A    A    ++W             W        A    QAG +  AA A      
Sbjct: 228 DYGAVAEYAAPAADTWGGE----------WGTDAAAQPAAIPAQAGADWTAAPAPAAGGW 277

Query: 192 FAAHAPTESWNDTVVPSADLAP-QSWAE 218
             A AP   W     P    AP  +W E
Sbjct: 278 DTAAAPAPGWEQGSAPVPAAAPTPNWGE 305

>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 295

 Score =  152 bits (386), Expect = 3e-45
 Identities = 98/210 (46%), Positives = 119/210 (56%), Gaps = 24/210 (11%)

Query: 12  IFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNN 71
            F N Q QAAFREPRLLVVTDP  DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNN
Sbjct: 107 TFTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNN 165

Query: 72  KSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIA 131
           K  HS+GLMWW+LAREVLR RGTI RE  W+V+ DL+FYRDPEE EKEEQA  E A    
Sbjct: 166 KGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKE 225

Query: 132 DKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDE 191
           +   +  A     E     P                 E     +  +  +  I   P ++
Sbjct: 226 EFQGEWTA--PAPEFTAAQP-----------------EVADWSEGVQVPSVPIQQFPTED 266

Query: 192 FAAHAPTESWNDTVVPSADLAPQSWAEESA 221
           ++A   TE W+             W   + 
Sbjct: 267 WSAQPSTEDWSAAPTA----QATEWVGTTT 292

>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Length = 256

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 28/98 (28%), Positives = 44/98 (44%)

Query: 25  PRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 84
           P  + V DP  +   + EA  + IPVIA  +T+S    VD  IP N+ +  SI L+    
Sbjct: 159 PDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRA 218

Query: 85  AREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQA 122
              +++ RG +        +V      +  E E E +A
Sbjct: 219 VDLIIQARGGVVEPSPSYALVQEAEATETPEGESEVEA 256

>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 231

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 16/65 (24%), Positives = 30/65 (46%)

Query: 25  PRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 84
           P ++++ D   ++  + E   + IP I   +T       DI+IP N+ +  SI L+   L
Sbjct: 158 PDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKL 217

Query: 85  AREVL 89
              + 
Sbjct: 218 VFAIC 222

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
3u5c_A	252	40S ribosomal protein S0-A; translation, ribosome,	100.0
2xzm_B	241	RPS0E; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	100.0
2zkq_b	295	40S ribosomal protein SA; protein-RNA complex, 40S	100.0
3bch_A	253	40S ribosomal protein SA; laminin receptor, P40 ri	100.0
3j20_B	202	30S ribosomal protein S2P; archaea, archaeal, KINK	100.0
1vi6_A	208	30S ribosomal protein S2P; structural genomics, ri	100.0
2vqe_B	256	30S ribosomal protein S2; tRNA-binding, rRNA-bindi	99.96
3r8n_B	218	30S ribosomal protein S2; protein biosynthesis, RN	99.96
3bbn_B	231	Ribosomal protein S2; small ribosomal subunit, spi	99.95
1m3s_A	186	Hypothetical protein YCKF; structural genomics, PS	86.98

>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B

Probab=100.00  E-value=2.7e-51  Score=369.23  Aligned_cols=121  Identities=52%  Similarity=0.947  Sum_probs=107.9

Q ss_pred             cccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHH
Q psy9845           4 LSSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW   81 (261)
Q Consensus         4 ~~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~   81 (261)
                      -.||+|||+|  |||+++..|++|++|||+||+.|||||+||+|+||||||||||||+|++|||+|||||||.+||+|||
T Consensus        95 ~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial~DTn~~p~~VD~~IP~Ndds~~SI~Li~  174 (252)
T 3u5c_A           95 ATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIW  174 (252)
T ss_dssp             CEEEESCCCTTSSSCTTSTTCCCCSEEEESCTTTTHHHHHHHHTTTCCEEEEECTTCCCTTCSSEEECCTTSTTHHHHHH
T ss_pred             CceecCcccCCcccChhhhhccCCceEEEeCCccchHHHHHHHHcCCCEEEEEcCCCCcccCCEEEeCCCCCcchHHHHH
Confidence            3589999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCC-CCCCCcccccccccccCchhhhhhhHhhh
Q psy9845          82 WLLAREVLRFRGTI-PREPKWDVVVDLFFYRDPEEAEKEEQAGK  124 (261)
Q Consensus        82 wlLAreVLr~rGtI-s~e~pWEVmPDLyFYRDPEEiEKEeqaaa  124 (261)
                      |+|+++||++||+| ||+|||+|||||||||||||+|||+++++
T Consensus       175 ~~La~aVl~~rg~i~s~~~~w~v~~dl~fyrdpee~e~~~~~~~  218 (252)
T 3u5c_A          175 YLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEA  218 (252)
T ss_dssp             HHHHHHHHSSSSSCCSSSCCCSSCGGGSSCCCC-----------
T ss_pred             HHHHHHHHHhcCCcCcCCCCCccCceeeeecCHHHHhhHHHhhh
Confidence            99999999999999 69999999999999999999999887544

>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B

Probab=100.00  E-value=3.3e-51  Score=366.15  Aligned_cols=146  Identities=38%  Similarity=0.730  Sum_probs=109.1

Q ss_pred             cccc-cccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHH
Q psy9845           4 LSSR-TGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLM   80 (261)
Q Consensus         4 ~~~i-~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi   80 (261)
                      -.|| +|||+|  |||+++.+|++|++|||+||+.|||||+||+++||||||||||||+|++|||+|||||||.+||+||
T Consensus        91 ~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn~~p~~VDy~IP~Ndds~~SI~Li  170 (241)
T 2xzm_B           91 CKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPRSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNNRSTESISMI  170 (241)
T ss_dssp             CBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTTTTHHHHHHHTTTTCCEEECCCSSSCCTTCCEECCSCCSSHHHHHHH
T ss_pred             CEEeccccccCCcccCccccccCCCCEEEEECCCcchHHHHHHHHhCCCEEEEecCCCCcccccEEEeCCCcccchHHHH
Confidence            3578 999999  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCCCcccccccccccCchhhhhhhHhhhhhhhhhhcCCccccccCCCCCCCCCC
Q psy9845          81 WWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPADEFAAHAPTESWNDT  150 (261)
Q Consensus        81 ~wlLAreVLr~rGtIs~e~pWEVmPDLyFYRDPEEiEKEeqaaae~a~~~~~~~~~e~~~~~~~~~w~~~  150 (261)
                      +|+|+++||++||+++|+|+|+|||||||||||||+|||||+++++++++++.. .|+++.+++.+|++.
T Consensus       171 ~~~la~ail~~rg~i~~~~~~~v~~dlf~~rdpee~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  239 (241)
T 2xzm_B          171 YWMIAREVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKV-AEVKEGEAEQNTDNK  239 (241)
T ss_dssp             HHHHHHHHHHHHTSSCSSSCCCSCTTTTSCCCCC------------------------------------
T ss_pred             HHHHHHHHHHhhCccCCCCCCCcCcceeeecCHHHhhhhhhhhhcccccchhcc-cccCCCCCCCccccc
Confidence            999999999999999999999999999999999999999999999998876543 367778888899764

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-50  Score=372.90  Aligned_cols=120  Identities=58%  Similarity=0.985  Sum_probs=117.5

Q ss_pred             ccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHH
Q psy9845           5 SSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWW   82 (261)
Q Consensus         5 ~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~w   82 (261)
                      .||+|||+|  |||+++..|++|++|||+||+.|||+|+||+|+||||||||||||+|++|||+|||||||.+||+||||
T Consensus       101 ~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~d~qAI~EA~~lnIPtIALvDTnsdp~~VDy~IP~NDds~rSI~Li~~  180 (305)
T 3iz6_A          101 HAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFW  180 (305)
T ss_dssp             EEECSCCCTTTTTTTTTSCSSCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTSCGGGCSEEEESCCSSTHHHHHHHH
T ss_pred             ccccCcccCCcccCcccccccCCceeEEeCcccchHHHHHHHHcCCCEEEEEcCCCCccccceEEeCCCCCccHHHHHHH
Confidence            589999999  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCCCcccccccccccCchhhhhhhHhhh
Q psy9845          83 LLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGK  124 (261)
Q Consensus        83 lLAreVLr~rGtIs~e~pWEVmPDLyFYRDPEEiEKEeqaaa  124 (261)
                      +|+++||++||+|||+|||||||||||||||||+|||||+.+
T Consensus       181 lLA~aVl~~rgtis~~~~w~v~pdl~fyrdpee~ek~~~~~~  222 (305)
T 3iz6_A          181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEA  222 (305)
T ss_dssp             HHHHHHHHTTSSCCSCCCCCCCCSSSCCCCCCCSCSHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCCCcccCceeeeeeChhhhhhhhhhhc
Confidence            999999999999999999999999999999999999998754

>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=1.6e-50  Score=370.86  Aligned_cols=128  Identities=68%  Similarity=1.135  Sum_probs=106.3

Q ss_pred             cccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHH
Q psy9845           4 LSSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW   81 (261)
Q Consensus         4 ~~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~   81 (261)
                      ..||+|||+|  |||+++..|++|++|||+||+.|||||+||+++||||||||||||+|++|||+|||||||.+||+||+
T Consensus        96 ~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~IP~Ndds~~SI~Li~  175 (295)
T 2zkq_b           96 ATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMW  175 (295)
T ss_dssp             CEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTCCCTTCSEEEESCSSCHHHHHHHH
T ss_pred             CceecceEecccccCcccccccCCCeEEEeCCCcchhHHHHHHHhCCCEEEEecCCCCcccCCEEEeCCCCccchHHHHH
Confidence            3589999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCCcccccccccccCchhhhhhhHhhhhhhhhhh
Q psy9845          82 WLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIA  131 (261)
Q Consensus        82 wlLAreVLr~rGtIs~e~pWEVmPDLyFYRDPEEiEKEeqaaae~a~~~~  131 (261)
                      |+|+++||++||+|+|+|||+|||||||||||||+||+||++++++++++
T Consensus       176 ~lla~aIl~~rg~i~~~~~w~v~~dlf~yrdpee~~~~~~~~~~~~~~~~  225 (295)
T 2zkq_b          176 WMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKE  225 (295)
T ss_dssp             HHHHHHHHHCCSSSSCCCCCCCCHHHHCCC--------------------
T ss_pred             HHHHHHHHHhcCcccCCCCCcccchheeecCHHHhhhhhhhhhhhhcchh
Confidence            99999999999999999999999999999999999999999888876544

>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.1e-48  Score=352.48  Aligned_cols=122  Identities=70%  Similarity=1.191  Sum_probs=105.9

Q ss_pred             ccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHH
Q psy9845           5 SSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWW   82 (261)
Q Consensus         5 ~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~w   82 (261)
                      .||+|||+|  |||+++..|++|++|||+||+.|||||+||+++||||||||||||||++|||+|||||||.+||+||+|
T Consensus       130 ~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~IP~Ndds~~SI~Li~~  209 (253)
T 3bch_A          130 TPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWW  209 (253)
T ss_dssp             EEEESCCCTTTTTCCSCSTTCSCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSSHHHHHHHHH
T ss_pred             eeecceecCCcccCccccccCCCCEEEEECCCccchHHHHHHHhCCCEEEEEcCCCCcccCceEeecCCcchhhHHHHHH
Confidence            589999999  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCCCcccccccccccCchhhhhhhHhhhhh
Q psy9845          83 LLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKES  126 (261)
Q Consensus        83 lLAreVLr~rGtIs~e~pWEVmPDLyFYRDPEEiEKEeqaaae~  126 (261)
                      +|+++||++||+|++++||+|||||||||||||+|||||++++|
T Consensus       210 lla~aIl~grg~i~~~~~w~v~~dlf~yrdpee~~~~~~~~~~~  253 (253)
T 3bch_A          210 MLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEK  253 (253)
T ss_dssp             HHHHHHHHHHTSSCSSSCCSSCGGGGCCC---------------
T ss_pred             HHHHHHHHhcCccCCCCCCccCceeeeecCHHHHhhhhhhhhcC
Confidence            99999999999999999999999999999999999999987764

>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=4.9e-39  Score=281.23  Aligned_cols=108  Identities=38%  Similarity=0.666  Sum_probs=104.3

Q ss_pred             cccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHH
Q psy9845           4 LSSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW   81 (261)
Q Consensus         4 ~~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~   81 (261)
                      -.|++|||+|  |||+++..|++|++|||+||+.|||||+||+++||||||||||||||++|||+|||||||.+||+|||
T Consensus        89 ~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~DTn~~p~~Vd~~IP~Ndds~~Si~Li~  168 (202)
T 3j20_B           89 ARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIY  168 (202)
T ss_dssp             CCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTTTSHHHHHHHHHHTCCEEEEECTTCCCTTCCEEEECCCSSHHHHHHHH
T ss_pred             CceeCceecCCCcccHhHHhccCCCeEEEeCCccchHHHHHHHHcCCCEEEEEcCCCCccccCEEEeCCCCcHHHHHHHH
Confidence            3589999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCCccccccccccc
Q psy9845          82 WLLAREVLRFRGTIPREPKWDVVVDLFFYR  111 (261)
Q Consensus        82 wlLAreVLr~rGtIs~e~pWEVmPDLyFYR  111 (261)
                      |+|+++||++||+||++.+|++++|.|.-+
T Consensus       169 ~~la~avl~~rg~i~~~~~~~~~~~~f~~~  198 (202)
T 3j20_B          169 WILAREILYNRGEIQSREDFKIPVEEFEMK  198 (202)
T ss_dssp             HHHHHHHHHHHTSSCSSSCCSSCTTTTSCC
T ss_pred             HHHHHHHHHhcCCcCCcCCCCCCHHHHhhh
Confidence            999999999999999999999999998643

>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A

Probab=100.00  E-value=8.9e-39  Score=280.78  Aligned_cols=106  Identities=33%  Similarity=0.569  Sum_probs=101.2

Q ss_pred             ccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHH
Q psy9845           5 SSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWW   82 (261)
Q Consensus         5 ~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~w   82 (261)
                      .|++|||+|  |||++++.|++|++|||+||+.|||||+||+++||||||||||||+|++|||+|||||||.+||+||+|
T Consensus        94 ~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn~~p~~Vd~~IP~Ndds~~SI~Li~~  173 (208)
T 1vi6_A           94 DYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYW  173 (208)
T ss_dssp             EEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHHHHHH
T ss_pred             eeecCEECCCcccChhhHhhCCCCEEEEECCCcchhHHHHHHHhCCCEEEEeCCCCCccccCEEEeCCCCchhHHHHHHH
Confidence            589999999  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCCCcccccccccccCchh
Q psy9845          83 LLAREVLRFRGTIPREPKWDVVVDLFFYRDPEE  115 (261)
Q Consensus        83 lLAreVLr~rGtIs~e~pWEVmPDLyFYRDPEE  115 (261)
                      +|+++|+++||+++     +||||+||||.++.
T Consensus       174 ~la~ail~grg~~~-----~~~~d~f~~~~~~~  201 (208)
T 1vi6_A          174 LLAREIAKIRGQDF-----TYSIEDFEAELEGG  201 (208)
T ss_dssp             HHHHHHHHHHTCCC-----CCCHHHHSCCC---
T ss_pred             HHHHHHHHHhCCCC-----CcChhheeeecCCC
Confidence            99999999999997     89999999999873

>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...

Probab=99.96  E-value=1.2e-29  Score=228.64  Aligned_cols=79  Identities=30%  Similarity=0.378  Sum_probs=74.0

Q ss_pred             ccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhhCCCCCCCC
Q psy9845          21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPK  100 (261)
Q Consensus        21 aFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~rGtIs~e~p  100 (261)
                      |.++|++|||+||+.||+||+||+++||||||||||||||++|||+|||||||.+||+||+|+|+++|+++++.  +.++
T Consensus       155 m~~~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~dp~~VdypIP~NDds~~sI~Li~~~la~ai~~g~~~--r~~~  232 (256)
T 2vqe_B          155 LKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGG--VVEP  232 (256)
T ss_dssp             CSSCCSEEEESCTTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSCHHHHHHHHHHHHHHHHTTTSC--CCCS
T ss_pred             cccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCCCchhcceEeecCCchHHHHHHHHHHHHHHHHHHHhh--hhcc
Confidence            34899999999999999999999999999999999999999999999999999999999999999999998874  4555


Q ss_pred             c
Q psy9845         101 W  101 (261)
Q Consensus       101 W  101 (261)
                      |
T Consensus       233 ~  233 (256)
T 2vqe_B          233 S  233 (256)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.95  E-value=1.9e-28  Score=217.77  Aligned_cols=74  Identities=23%  Similarity=0.367  Sum_probs=70.8

Q ss_pred             ccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhhCC
Q psy9845          21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGT   94 (261)
Q Consensus        21 aFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~rGt   94 (261)
                      |.++|++|||+||+.||+||+||+++||||||||||||||++|||||||||||.+||+||+++|+.+|+++++.
T Consensus       154 m~~~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~IP~Ndds~~si~li~~~la~ai~~g~~~  227 (231)
T 3bbn_B          154 MTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSS  227 (231)
T ss_dssp             CCSCCSEEEESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEECCCCSSSHHHHHHHHHHHHHHHHHTSSC
T ss_pred             cccCCCEEEEeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEEeeCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999999999999999999999999999998863

>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A

Probab=86.98  E-value=2.9  Score=33.14  Aligned_cols=74  Identities=18%  Similarity=0.251  Sum_probs=48.5

Q ss_pred             ccCCCCEEEEeCCCCCch----hHHHHhhcCCCEEEEecC-CCCC-Ccceeec--cCCCCC-----------cc-----h
Q psy9845          21 AFREPRLLVVTDPHTDHQ----PITEAAYVNIPVIAFCNT-ESPL-RFVDIAI--PCNNKS-----------PH-----S   76 (261)
Q Consensus        21 aFrEPrLLVVTDPraDhQ----ALtEAS~VNIPtIALcDT-DSpL-~~VDiaI--PcNNds-----------~~-----S   76 (261)
                      ...+-+++|++.......    ++++|...|.+||+|++. +|++ .+.|+.|  |++...           ..     +
T Consensus        76 ~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~s~~~~~  155 (186)
T 1m3s_A           76 PLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQT  155 (186)
T ss_dssp             CCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCSCC-----CCCCSSTTHHHHHH
T ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCccccCCCCcccccccCccHHHHH
Confidence            345668888877655543    668889999999999986 4554 3345444  544332           11     2


Q ss_pred             HHHHHHHHHHHHHHhhCC
Q psy9845          77 IGLMWWLLAREVLRFRGT   94 (261)
Q Consensus        77 VgLi~wlLAreVLr~rGt   94 (261)
                      .-+++.+|...+...+|.
T Consensus       156 ~~~~~d~L~~~~~~~~~~  173 (186)
T 1m3s_A          156 LLLFYDAVILKLMEKKGL  173 (186)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCC
Confidence            356678888888776664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1vi6a_	193	c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Arch	1e-28
d2uubb1	234	c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus	3e-23
d2gy9b1	218	c.23.15.1 (B:8-225) Ribosomal protein S2 {Escheric	5e-20

>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  105 bits (263), Expect = 1e-28
 Identities = 33/91 (36%), Positives = 52/91 (57%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
              + +REP ++ V DP  D Q ++EA  V IPV+A C++ +    VD+ IP NNK   +
Sbjct: 103 PMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRA 162

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDL 107
           + +++WLLARE+ + RG        D   +L
Sbjct: 163 LAIVYWLLAREIAKIRGQDFTYSIEDFEAEL 193

>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]} Length = 234

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Thermus thermophilus [TaxId: 274]

 Score = 92.5 bits (229), Expect = 3e-23
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 22  FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
            R P  + V DP  +   + EA  + IPVIA  +T+S    VD  IP N+ +  SI L+ 
Sbjct: 150 KRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLIL 209

Query: 82  WLLAREVLRFRGTIPR-EPKWDVV 104
                 +++ RG +    P + +V
Sbjct: 210 SRAVDLIIQARGGVVEPSPSYALV 233

>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]} Length = 218

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Escherichia coli [TaxId: 562]

 Score = 83.6 bits (206), Expect = 5e-20
 Identities = 22/69 (31%), Positives = 30/69 (43%)

Query: 22  FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
              P  L V D   +H  I EA  + IPV A  +T S    VD  IP N+ +  ++ L  
Sbjct: 147 GGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYL 206

Query: 82  WLLAREVLR 90
             +A  V  
Sbjct: 207 GAVAATVRE 215

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1vi6a_	193	Ribosomal protein S2 {Archaeon Archaeoglobus fulgi	99.96
d2uubb1	234	Ribosomal protein S2 {Thermus thermophilus [TaxId:	99.94
d2gy9b1	218	Ribosomal protein S2 {Escherichia coli [TaxId: 562	99.92

>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=1.2e-30  Score=224.44  Aligned_cols=92  Identities=37%  Similarity=0.679  Sum_probs=89.2

Q ss_pred             cccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHH
Q psy9845           4 LSSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW   81 (261)
Q Consensus         4 ~~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~   81 (261)
                      ..|++|||+|  |||.++.++++|++|||+||..|++||+||+++||||||||||||+|++|||+|||||||.+||+|++
T Consensus        88 ~~~v~~RWlgG~LTN~~~~~~~~P~~liv~dp~~d~~ai~Ea~~l~IPvI~ivDTn~~p~~vdy~IP~Ndds~~Si~li~  167 (193)
T d1vi6a_          88 SDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVY  167 (193)
T ss_dssp             CEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHHHHH
T ss_pred             CCcccccccCCcccchHHhhcccceEEEEEcCcchHHHHHHHHHcCCCeeeEeccCCCCcccceEEeCCCChHHHHHHHH
Confidence            3589999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCC
Q psy9845          82 WLLAREVLRFRGTI   95 (261)
Q Consensus        82 wlLAreVLr~rGtI   95 (261)
                      |+|+++|+++||.-
T Consensus       168 ~~l~~ai~~~k~~~  181 (193)
T d1vi6a_         168 WLLAREIAKIRGQD  181 (193)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHcCCc
Confidence            99999999999853

>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2.4e-27  Score=208.00  Aligned_cols=83  Identities=30%  Similarity=0.427  Sum_probs=78.2

Q ss_pred             hhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhhCCCCC
Q psy9845          18 FQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPR   97 (261)
Q Consensus        18 IQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~rGtIs~   97 (261)
                      |+.|.+.|++|||+||..|++||+||.++||||||||||||||++|||+|||||||.+||.||+++|+++|+++||.++.
T Consensus       146 i~~m~~~Pd~viv~d~~~~~~Ai~Ea~~l~IPvIaivDTn~dp~~vdypIP~NDds~~sI~li~~~l~~ai~~gk~~~~~  225 (234)
T d2uubb1         146 FRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVE  225 (234)
T ss_dssp             GGGCSSCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTSCGGGCSEEEESCSSCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             chhhhhcceeEEEecCCccHHHHHHHHhhCCCEEEEeecCCCccCCcEEEECCCchHHHHHHHHHHHHHHHHHHhcccCc
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             CCC
Q psy9845          98 EPK  100 (261)
Q Consensus        98 e~p  100 (261)
                      ..|
T Consensus       226 ~~~  228 (234)
T d2uubb1         226 PSP  228 (234)
T ss_dssp             SCT
T ss_pred             cCC
Confidence            554

>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=5.3e-26  Score=196.79  Aligned_cols=76  Identities=30%  Similarity=0.335  Sum_probs=73.6

Q ss_pred             hhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhh
Q psy9845          17 QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFR   92 (261)
Q Consensus        17 QIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~r   92 (261)
                      ||+.|.++|++|||+||..|++||+||.++||||||||||||+|..|||||||||||.+||.|++++|+++|+++|
T Consensus       142 Gi~~m~~lPd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~dp~~idypIP~Ndds~~sI~li~~~l~~ai~~G~  217 (218)
T d2gy9b1         142 GIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR  217 (218)
T ss_dssp             SGGGCCCCCCEEEESCTTTTHHHHHHHHHTTCCEEECCCSSSCGGGCTEECCSCSSCHHHHHHHHHHHHHHHHTTT
T ss_pred             CccCCCCCCceeeeccccccHHHHHHHHHcCCCEEEEeeCCCCCccCceeeecCCcHHHHHHHHHHHHHHHHHhhc
Confidence            5778889999999999999999999999999999999999999999999999999999999999999999999886