Psyllid ID: psy9852

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALLIELAATKTHLSQ
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEEEEEccccccccccccccccccEEEEEccccEEEccccEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEccccccccEEEccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccEcccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEEEEEEccHHHHHHHHccccccccEEccccccEEEccccEEEEEccHHHHHHHccccccEEEEEcccccccEEEEEEEEcccccccccHHHHHccccccccHHcHccccHHHHHccHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mfafdaifsdepqseiCTSALSDVIQAVIsgsdgclfcfgharlgksytmvgspqssatlgviPSAISWLFRCISEqkhktgarfsvRASAIEISSSSQHVKDLLStysngkffRLCFLKRfhaeedeempcpvppplhsnlltlsrdslisnkrndnsslysnsnerlhdpggtgsiksfrnfgfgsgiQYCKNDLETLEQYCKndfnqstwRNDRLEQLKREKRALLIELAATKTHLSQ
Flexible Loop (DISEMBL)
mfafdaifsdepqSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLLTLSRDSLISNkrndnsslysnsnerlhdpgGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNdfnqstwrnDRLEQLKREKRALLIELaatkthlsq
Low Complexity Region (SEG)
MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALLIELAATKTHLSQ
Disordered region (IsUnstruct)
**************EICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEI*****HVKDLLSTYSNGKFFRLCFLKRFHA*****************************************************IKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQL****RALLIEL*********
Disordered Region (DISOPRED)
MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST*************RFHAEEDEEMPCPVPPPLHSNLLTLSRD*******************RLHDPGGTGSIK*************CKNDLETLEQYCKNDF***********QLKREKRALLIELA********
Disordered Region (DISEMBL)
MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALLIELAATKTHLSQ
Disordered Region (DISPRO)
MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALLIELAATK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRxxxxxxxxxxxxxxxxxxxxxLSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q2KJY2	2108	Kinesin-like protein KIF2	yes	N/A	0.468	0.053	0.561	1e-34
Q7TNC6	2112	Kinesin-like protein KIF2	yes	N/A	0.468	0.053	0.561	2e-34
Q9ULI4	1882	Kinesin-like protein KIF2	no	N/A	0.468	0.060	0.526	1e-31
Q52KG5	1881	Kinesin-like protein KIF2	no	N/A	0.468	0.060	0.526	4e-31
Q9VLW2	1131	Kinesin-like protein CG14	yes	N/A	0.493	0.105	0.4	2e-20
Q29MB2	1171	Kinesin-like protein GA13	yes	N/A	0.493	0.101	0.380	1e-19
Q6RZZ9	1265	Kinesin-related protein 1	yes	N/A	0.369	0.070	0.351	4e-12
Q9HAQ2	790	Kinesin-like protein KIF9	no	N/A	0.419	0.127	0.320	5e-11
Q07970	793	Kinesin-1 OS=Arabidopsis	yes	N/A	0.427	0.129	0.311	7e-11
F4JGP4	790	Kinesin-5 OS=Arabidopsis	no	N/A	0.427	0.130	0.311	1e-10

>sp|Q2KJY2|KI26B_HUMAN Kinesin-like protein KIF26B OS=Homo sapiens GN=KIF26B PE=2 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 88/114 (77%), Gaps = 1/114 (0%)

Query: 1   MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDA+F  D  Q+E+C   +++VIQ+V++G+DGC+FCFGHA+LGKSYTM+G   S   
Sbjct: 506 MFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGKDDSMQN 565

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF 113
           LG+IP AISWLF+ I+E+K KTGARFSVR SA+E+    ++++DLLS  + G  
Sbjct: 566 LGIIPCAISWLFKLINERKEKTGARFSVRVSAVEVWGKEENLRDLLSEVATGSL 619

Essential for embryonic kidney development. Plays an important role in the compact adhesion between mesenchymal cells adjacent to the ureteric buds, possibly by interacting with MYH10. This could lead to the establishment of the basolateral integrity of the mesenchyme and the polarized expression of ITGA8, which maintains the GDNF expression required for further ureteric bud attraction.
Homo sapiens (taxid: 9606)

>sp|Q7TNC6|KI26B_MOUSE Kinesin-like protein KIF26B OS=Mus musculus GN=Kif26b PE=1 SV=3

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 88/114 (77%), Gaps = 1/114 (0%)

Query: 1   MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDA+F  D  Q+E+C   +++VIQ+V++G+DGC+FCFGHA+LGKSYTM+G   S   
Sbjct: 506 MFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGRDDSMQN 565

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF 113
           LG+IP AISWLF+ I+E+K KTGARFSVR SA+E+    ++++DLLS  + G  
Sbjct: 566 LGIIPCAISWLFKLINERKEKTGARFSVRISAVEVWGKEENLRDLLSEVATGSL 619

Essential for embryonic kidney development. Plays an important role in the compact adhesion between mesenchymal cells adjacent to the ureteric buds, possibly by interacting with MYH10. This could lead to the establishment of the basolateral integrity of the mesenchyme and the polarized expression of ITGA8, which maintains the GDNF expression required for further ureteric bud attraction.

Mus musculus (taxid: 10090)

>sp|Q9ULI4|KI26A_HUMAN Kinesin-like protein KIF26A OS=Homo sapiens GN=KIF26A PE=2 SV=3

 Score =  136 bits (343), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/114 (52%), Positives = 84/114 (73%), Gaps = 1/114 (0%)

Query: 1   MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDA+F  D  Q+E+C+  ++DV+Q+V+SG+DGC+F FGH  LGKSYTM+G   S  +
Sbjct: 429 MFAFDAVFPQDSEQAEVCSGTVADVLQSVVSGADGCIFSFGHMSLGKSYTMIGKDSSPQS 488

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF 113
           LG++P AISWLFR I E++ +TG RFSVR SA+E+    Q ++DLL+  + G  
Sbjct: 489 LGIVPCAISWLFRLIEERRERTGTRFSVRVSAVEVCGRDQSLRDLLAEVAPGSL 542

Atypical kinesin that plays a key role in enteric neuron development. Acts by repressing a cell growth signaling pathway in the enteric nervous system development, possibly via its interaction with GRB2 that prevents GRB2-binding to SHC, thereby attenating the GDNF-Ret signaling. Binds to microtubules but lacks microtubule-based motility due to the absence of ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q52KG5|KI26A_MOUSE Kinesin-like protein KIF26A OS=Mus musculus GN=Kif26a PE=1 SV=2

 Score =  135 bits (339), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/114 (52%), Positives = 84/114 (73%), Gaps = 1/114 (0%)

Query: 1   MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDAIF  D  Q+E+C+  ++DV+Q+V+SG+DGC+F FGH  LGKSYTM+G   S  +
Sbjct: 422 MFAFDAIFPQDSEQAEVCSGTVADVLQSVVSGADGCIFSFGHMSLGKSYTMIGKDSSPQS 481

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF 113
           LG++P AISWLFR I E+K + G RFS+R SA+E+    Q ++DLL+  ++G  
Sbjct: 482 LGIVPCAISWLFRLIDERKERLGTRFSIRVSAVEVCGHDQSLRDLLAEVASGSL 535

Atypical kinesin that plays a key role in enteric neuron development. Acts by repressing a cell growth signaling pathway in the enteric nervous system development, possibly via its interaction with GRB2 that prevents GRB2-binding to SHC, thereby attenating the GDNF-Ret signaling. Binds to microtubules but lacks microtubule-based motility due to the absence of ATPase activity.

Mus musculus (taxid: 10090)

>sp|Q9VLW2|KI26L_DROME Kinesin-like protein CG14535 OS=Drosophila melanogaster GN=CG14535 PE=2 SV=2

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 83/140 (59%), Gaps = 21/140 (15%)

Query: 1   MFAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG------- 52
           MFAFD +F+ E  QS++C SALS+VI AV+ GSDGCL   G+   G++ T++G       
Sbjct: 102 MFAFDNLFTGEDKQSDVCASALSEVIPAVLEGSDGCLLAMGYPATGQAQTVLGELGGGSG 161

Query: 53  -----SPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHV--KDLL 105
                    + +LG  P AI+WL++ I E++ K+GARFSVR SA+ +S++      +DLL
Sbjct: 162 SGSASGSGVACSLGAAPCAIAWLYKGIQERRQKSGARFSVRVSAVGVSATKPDALSQDLL 221

Query: 106 STY------SNGKFFRLCFL 119
            ++      S G + R  FL
Sbjct: 222 ISHAAESDDSPGIYLRDDFL 241

Drosophila melanogaster (taxid: 7227)

>sp|Q29MB2|KI26L_DROPS Kinesin-like protein GA13060 OS=Drosophila pseudoobscura pseudoobscura GN=GA13060 PE=3 SV=3

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 28/147 (19%)

Query: 1   MFAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGS------ 53
           MFAFD +F+ E  QS++C SALS+VI AV+ GSDGCL   G+   G+ +T++G       
Sbjct: 99  MFAFDNLFTAEDKQSDVCASALSEVIPAVLEGSDGCLLAMGYPSTGQPHTVLGGDVATGA 158

Query: 54  -------------PQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQH 100
                          ++ +LG  P AI+WL++ I E++ K+GARFSVR SA+ +S++   
Sbjct: 159 GAGAATGTGTGTGSVAACSLGAAPCAIAWLYKGIQERRQKSGARFSVRVSAVGVSATKPD 218

Query: 101 V--KDLLSTY------SNGKFFRLCFL 119
               DLL ++      S G + R  FL
Sbjct: 219 ALSTDLLISHAAESDDSPGIYLRDDFL 245

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q6RZZ9|KIF13_DICDI Kinesin-related protein 13 OS=Dictyostelium discoideum GN=kif13 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 5/94 (5%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           + FD +F  D  QSE+   A+  +   V+ G +G +F +G    GK++TM G   S+  +
Sbjct: 67  YKFDHVFDQDSIQSEVFNIAVKPICDEVLLGFNGTIFVYGQTGTGKTHTMEGKHGSNEDM 126

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEI 94
           G+IP  I++LF+C+ +    +GA +++RAS +EI
Sbjct: 127 GIIPRTINYLFQCLEQ----SGADYNIRASHLEI 156

Microtubule-associated force-producing protein that plays a role in organelle transport. Its motor activity is directed toward the microtubule's plus end (By similarity). Cooperates with dynein to control the spindle elongation rate, but is dispensable for mitosis.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9HAQ2|KIF9_HUMAN Kinesin-like protein KIF9 OS=Homo sapiens GN=KIF9 PE=1 SV=4

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 5/106 (4%)

Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F  D +  D  Q  +  +   DV+   + G +G + C+G    GK+YTM+G+ ++    G
Sbjct: 55  FKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRG 114

Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
           ++P A+  +FR I E+        +VR S +EI + S  + DLLST
Sbjct: 115 ILPRALQQVFRMIEERPTHA---ITVRVSYLEIYNES--LFDLLST 155

Homo sapiens (taxid: 9606)

>sp|Q07970|ATK1_ARATH Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F FD +F+ E   E     +S ++Q+ + G   C+F +G    GK+YTM+G P++    G
Sbjct: 478 FTFDKVFNHEASQEEVFFEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPEAPDQKG 537

Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
           +IP ++  +F+  S+     G ++ ++ S +EI + +  ++DLLST
Sbjct: 538 LIPRSLEQIFQA-SQSLGAQGWKYKMQVSMLEIYNET--IRDLLST 580

Kinesin that supports microtubule movement in an ATP-dependent manner and has a minus-end directed polarity. Plays a crucial role in spindle morphogenesis in male Arabidopsis meiosis.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JGP4|ATK5_ARATH Kinesin-5 OS=Arabidopsis thaliana GN=ATK5 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 3/106 (2%)

Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F FD +F      E     +S ++Q+ + G   C+F +G    GK+YTM+G P++    G
Sbjct: 475 FTFDKVFDHGASQEEVFFEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPETPEQKG 534

Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
           +IP ++  +F+  S+     G ++ ++ S +EI + S  ++DLLST
Sbjct: 535 LIPRSLEQIFKT-SQSLSTQGWKYKMQVSMLEIYNES--IRDLLST 577

Kinesin that supports microtubule movement in an ATP-dependent manner and that functions as a minus-end directed motor as well as a plus-end tracking protein. During mitosis, is involved in early spindle assembly. Participates in the capture of antiparallel interpolar microtubules and helps in generating force to coalign microtubules.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
357616829	1126	hypothetical protein KGM_08563 [Danaus p	0.456	0.097	0.702	2e-40
189236427	1267	PREDICTED: similar to CG14535 CG14535-PA	0.456	0.086	0.666	1e-38
270005919	1041	hypothetical protein TcasGA2_TC008042 [T	0.460	0.106	0.660	2e-38
242025241	1267	conserved hypothetical protein [Pediculu	0.456	0.086	0.666	2e-38
350409135	2004	PREDICTED: hypothetical protein LOC10074	0.456	0.054	0.639	3e-37
340712748	2010	PREDICTED: hypothetical protein LOC10065	0.456	0.054	0.639	3e-37
328787856	1260	PREDICTED: kinesin 11 [Apis mellifera]	0.456	0.087	0.639	4e-37
307207471	1260	Kinesin-like protein CG14535 [Harpegnath	0.456	0.087	0.639	4e-37
383847567	1254	PREDICTED: kinesin-like protein KIF26A-l	0.456	0.087	0.639	4e-37
345485236	1276	PREDICTED: kinesin-like protein CG14535-	0.456	0.086	0.639	2e-36

>gi|357616829|gb|EHJ70430.1| hypothetical protein KGM_08563 [Danaus plexippus]

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 95/111 (85%), Gaps = 1/111 (0%)

Query: 1   MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDAIFS D+PQ+EIC+SAL+DVI AVI+G+DGCLFCFGHA LGKSYTM+G P SS+T
Sbjct: 52  MFAFDAIFSQDDPQTEICSSALTDVIHAVINGTDGCLFCFGHAGLGKSYTMLGRPDSSST 111

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           LG IP AISWLFR I+EQKHK G RFSVR SA+E+ +++  ++DLL+ Y N
Sbjct: 112 LGAIPCAISWLFRGIAEQKHKCGTRFSVRVSAVELCTNTNQIRDLLAPYHN 162

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236427|ref|XP_972268.2| PREDICTED: similar to CG14535 CG14535-PA [Tribolium castaneum]

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 96/111 (86%), Gaps = 1/111 (0%)

Query: 1   MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDAIFS D+ Q+E+C+SAL+DVI AVI+G+DGCLFCFGHA LGKSYTM+G+P+++ T
Sbjct: 290 MFAFDAIFSQDDSQTEVCSSALTDVIHAVINGNDGCLFCFGHAGLGKSYTMLGTPENANT 349

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           LG+IP AISWLF+ I+EQK KTGARFSVR SA+E+   +  ++DLL+ Y+N
Sbjct: 350 LGIIPCAISWLFKGINEQKQKTGARFSVRVSALEVCGPTNQMRDLLAGYAN 400

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005919|gb|EFA02367.1| hypothetical protein TcasGA2_TC008042 [Tribolium castaneum]

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/112 (66%), Positives = 96/112 (85%), Gaps = 1/112 (0%)

Query: 1   MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDAIFS D+ Q+E+C+SAL+DVI AVI+G+DGCLFCFGHA LGKSYTM+G+P+++ T
Sbjct: 63  MFAFDAIFSQDDSQTEVCSSALTDVIHAVINGNDGCLFCFGHAGLGKSYTMLGTPENANT 122

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG 111
           LG+IP AISWLF+ I+EQK KTGARFSVR SA+E+   +  ++DLL+ Y+N 
Sbjct: 123 LGIIPCAISWLFKGINEQKQKTGARFSVRVSALEVCGPTNQMRDLLAGYANA 174

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242025241|ref|XP_002433034.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518550|gb|EEB20296.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 95/111 (85%), Gaps = 1/111 (0%)

Query: 1   MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDAIF+ D+ Q+EIC++AL+D+I AVI+G+DGCLFCFGHA+LGK+ TM+GSP+S  T
Sbjct: 54  MFAFDAIFTQDDSQAEICSTALTDIIHAVINGTDGCLFCFGHAKLGKTGTMLGSPESVNT 113

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           LG+IP AISWLFR I EQK KTGARFSVR SA+E+   +Q +KDLL+ ++N
Sbjct: 114 LGIIPCAISWLFRGIHEQKQKTGARFSVRVSAVEVCQPTQQLKDLLAGHAN 164

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409135|ref|XP_003488623.1| PREDICTED: hypothetical protein LOC100745168 [Bombus impatiens]

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 95/111 (85%), Gaps = 1/111 (0%)

Query: 1   MFAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDAIF++E  Q+EIC+SAL+DVI AVI+G+DGCLFCFGHA LGKS+TM+G+P++  T
Sbjct: 800 MFAFDAIFTEEDSQTEICSSALTDVIHAVINGTDGCLFCFGHAGLGKSHTMLGTPEAGHT 859

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           LG IP AI+WLFR ISEQ+ +TGARFSVR S +E+++  Q ++DLL+ ++N
Sbjct: 860 LGAIPCAIAWLFRGISEQRQRTGARFSVRVSCVELTTGQQQLRDLLAAHAN 910

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712748|ref|XP_003394917.1| PREDICTED: hypothetical protein LOC100651674 [Bombus terrestris]

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 95/111 (85%), Gaps = 1/111 (0%)

Query: 1   MFAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDAIF++E  Q+EIC+SAL+DVI AVI+G+DGCLFCFGHA LGKS+TM+G+P++  T
Sbjct: 806 MFAFDAIFTEEDSQTEICSSALTDVIHAVINGTDGCLFCFGHAGLGKSHTMLGTPEAGHT 865

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           LG IP AI+WLFR ISEQ+ +TGARFSVR S +E+++  Q ++DLL+ ++N
Sbjct: 866 LGAIPCAIAWLFRGISEQRQRTGARFSVRVSCVELTTGQQQLRDLLAAHAN 916

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787856|ref|XP_394491.4| PREDICTED: kinesin 11 [Apis mellifera]

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 95/111 (85%), Gaps = 1/111 (0%)

Query: 1   MFAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDAIF++E  Q+EIC+SAL+DVI AVI+G+DGCLFCFGHA LGKS+TM+G+P++  T
Sbjct: 47  MFAFDAIFTEEDSQTEICSSALTDVIHAVINGTDGCLFCFGHAGLGKSHTMLGTPEAGHT 106

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           LG IP AI+WLFR ISEQ+ +TGARFSVR S +E+++  Q ++DLL+ ++N
Sbjct: 107 LGAIPCAIAWLFRGISEQRQRTGARFSVRVSCVELTTGQQQLRDLLAAHAN 157

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207471|gb|EFN85182.1| Kinesin-like protein CG14535 [Harpegnathos saltator]

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 95/111 (85%), Gaps = 1/111 (0%)

Query: 1   MFAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDAIF++E  Q+EIC+SAL+DVI AVI+G+DGCLFCFGHA LGKS+TM+G+P++  T
Sbjct: 50  MFAFDAIFTEEDSQTEICSSALTDVIHAVINGTDGCLFCFGHAGLGKSHTMLGTPEAGHT 109

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           LG IP AI+WLFR ISEQ+ +TGARFSVR S +E+++  Q ++DLL+ ++N
Sbjct: 110 LGAIPCAIAWLFRGISEQRQRTGARFSVRVSCVELTTGQQQLRDLLAAHAN 160

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847567|ref|XP_003699424.1| PREDICTED: kinesin-like protein KIF26A-like [Megachile rotundata]

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 95/111 (85%), Gaps = 1/111 (0%)

Query: 1   MFAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDAIF++E  Q+EIC+SAL+DVI AVI+G+DGCLFCFGHA LGKS+TM+G+P++  T
Sbjct: 47  MFAFDAIFTEEDSQTEICSSALTDVIHAVINGTDGCLFCFGHAGLGKSHTMLGTPEAGHT 106

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           LG IP AI+WLFR ISEQ+ +TGARFSVR S +E+++  Q ++DLL+ ++N
Sbjct: 107 LGAIPCAIAWLFRGISEQRQRTGARFSVRVSCVELTTGQQQLRDLLAAHAN 157

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485236|ref|XP_001599402.2| PREDICTED: kinesin-like protein CG14535-like [Nasonia vitripennis]

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 93/111 (83%), Gaps = 1/111 (0%)

Query: 1   MFAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           MFAFDAIF++E  Q+EIC+SAL+DVI AVI+G+DGCLFCFGHA LGK+YTM+G+ ++  T
Sbjct: 47  MFAFDAIFTEEDSQTEICSSALTDVIHAVINGTDGCLFCFGHAGLGKTYTMLGTAEAGHT 106

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           LG IP AI+WLFR ISEQ+ KTGARFSVR S +E+++  Q ++DLL  ++N
Sbjct: 107 LGAIPCAIAWLFRGISEQRQKTGARFSVRVSCVELTTGQQQLRDLLVAHAN 157

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
UNIPROTKB|F1NW72	1629	Gga.54622 "Uncharacterized pro	0.460	0.068	0.553	2.1e-34
UNIPROTKB|F1MNK8	1525	KIF26B "Uncharacterized protei	0.460	0.072	0.571	2.2e-34
UNIPROTKB|G3MZ58	1595	KIF26B "Uncharacterized protei	0.460	0.069	0.571	2.7e-34
UNIPROTKB|F1S8L6	1612	KIF26B "Uncharacterized protei	0.460	0.068	0.571	2.8e-34
RGD|1560022	2111	Kif26b "kinesin family member	0.460	0.052	0.571	5.2e-34
UNIPROTKB|I3LQA2	1771	KIF26B "Uncharacterized protei	0.460	0.062	0.571	5.3e-34
UNIPROTKB|B7WPD9	1727	KIF26B "Kinesin-like protein K	0.460	0.064	0.571	9.2e-33
UNIPROTKB|Q2KJY2	2108	KIF26B "Kinesin-like protein K	0.460	0.052	0.571	1.6e-32
MGI|MGI:2447076	2112	Kif26b "kinesin family member	0.460	0.052	0.571	2.6e-32
UNIPROTKB|E1C4G2	2072	E1C4G2 "Uncharacterized protei	0.460	0.053	0.571	1.9e-31

UNIPROTKB|F1NW72 Gga.54622 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 362 (132.5 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
 Identities = 62/112 (55%), Positives = 90/112 (80%)

Query:     1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
             MFAFDA+F  D  Q+E+C+  +++VIQ+V++G+DGC+FCFGH +LGKS+TM+G   S+ +
Sbjct:   117 MFAFDAVFPQDASQAEVCSGTVAEVIQSVVNGADGCIFCFGHVKLGKSFTMIGKDSSTQS 176

Query:    60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG 111
             LG+IP AISWLF+ I+E+K KTG RFS+R SA+EIS   +++KDLL+  + G
Sbjct:   177 LGIIPCAISWLFKLINERKEKTGTRFSIRVSAVEISGKDENLKDLLAEVATG 228

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0001560 "regulation of cell growth by extracellular stimulus" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0009968 "negative regulation of signal transduction" evidence=IEA

GO:0048484 "enteric nervous system development" evidence=IEA

UNIPROTKB|F1MNK8 KIF26B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 361 (132.1 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
 Identities = 64/112 (57%), Positives = 88/112 (78%)

Query:     1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
             MFAFDA+F  D  Q+E+C   +++VIQ+V++G+DGC+FCFGHA+LGKSYTM+G   S   
Sbjct:    57 MFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGKDDSMQN 116

Query:    60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG 111
             LG+IP AISWLF+ I+E+K KTGARFSVR SA+E+    ++++DLLS  + G
Sbjct:   117 LGIIPCAISWLFKLINERKEKTGARFSVRISAVEVWGKEENLRDLLSEVATG 168

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|G3MZ58 KIF26B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 361 (132.1 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
 Identities = 64/112 (57%), Positives = 88/112 (78%)

Query:     1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
             MFAFDA+F  D  Q+E+C   +++VIQ+V++G+DGC+FCFGHA+LGKSYTM+G   S   
Sbjct:    57 MFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGKDDSMQN 116

Query:    60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG 111
             LG+IP AISWLF+ I+E+K KTGARFSVR SA+E+    ++++DLLS  + G
Sbjct:   117 LGIIPCAISWLFKLINERKEKTGARFSVRISAVEVWGKEENLRDLLSEVATG 168

GO:0072092 "ureteric bud invasion" evidence=IEA

GO:0030010 "establishment of cell polarity" evidence=IEA

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1S8L6 KIF26B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 361 (132.1 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
 Identities = 64/112 (57%), Positives = 88/112 (78%)

Query:     1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
             MFAFDA+F  D  Q+E+C   +++VIQ+V++G+DGC+FCFGHA+LGKSYTM+G   S   
Sbjct:   169 MFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGKDDSMQN 228

Query:    60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG 111
             LG+IP AISWLF+ I+E+K KTGARFSVR SA+E+    ++++DLLS  + G
Sbjct:   229 LGIIPCAISWLFKLINERKEKTGARFSVRISAVEVWGKEENLRDLLSEVATG 280

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

RGD|1560022 Kif26b "kinesin family member 26B" [Rattus norvegicus (taxid:10116)]

 Score = 360 (131.8 bits), Expect = 5.2e-34, Sum P(3) = 5.2e-34
 Identities = 64/112 (57%), Positives = 88/112 (78%)

Query:     1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
             MFAFDA+F  D  Q+E+C   +++VIQ+V++G+DGC+FCFGHA+LGKSYTM+G   S   
Sbjct:   506 MFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGRDDSMQN 565

Query:    60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG 111
             LG+IP AISWLF+ I+E+K KTGARFSVR SA+E+    ++++DLLS  + G
Sbjct:   566 LGIIPCAISWLFKLINERKEKTGARFSVRISAVEVWGKEENLRDLLSEVATG 617

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IEA;ISO

GO:0030010 "establishment of cell polarity" evidence=IEA;ISO

GO:0072092 "ureteric bud invasion" evidence=IEA;ISO

UNIPROTKB|I3LQA2 KIF26B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 361 (132.1 bits), Expect = 5.3e-34, Sum P(3) = 5.3e-34
 Identities = 64/112 (57%), Positives = 88/112 (78%)

Query:     1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
             MFAFDA+F  D  Q+E+C   +++VIQ+V++G+DGC+FCFGHA+LGKSYTM+G   S   
Sbjct:   169 MFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGKDDSMQN 228

Query:    60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG 111
             LG+IP AISWLF+ I+E+K KTGARFSVR SA+E+    ++++DLLS  + G
Sbjct:   229 LGIIPCAISWLFKLINERKEKTGARFSVRISAVEVWGKEENLRDLLSEVATG 280

GO:0072092 "ureteric bud invasion" evidence=IEA

GO:0030010 "establishment of cell polarity" evidence=IEA

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|B7WPD9 KIF26B "Kinesin-like protein KIF26B" [Homo sapiens (taxid:9606)]

 Score = 362 (132.5 bits), Expect = 9.2e-33, Sum P(2) = 9.2e-33
 Identities = 64/112 (57%), Positives = 88/112 (78%)

Query:     1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
             MFAFDA+F  D  Q+E+C   +++VIQ+V++G+DGC+FCFGHA+LGKSYTM+G   S   
Sbjct:   125 MFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGKDDSMQN 184

Query:    60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG 111
             LG+IP AISWLF+ I+E+K KTGARFSVR SA+E+    ++++DLLS  + G
Sbjct:   185 LGIIPCAISWLFKLINERKEKTGARFSVRVSAVEVWGKEENLRDLLSEVATG 236

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|Q2KJY2 KIF26B "Kinesin-like protein KIF26B" [Homo sapiens (taxid:9606)]

 Score = 362 (132.5 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 64/112 (57%), Positives = 88/112 (78%)

Query:     1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
             MFAFDA+F  D  Q+E+C   +++VIQ+V++G+DGC+FCFGHA+LGKSYTM+G   S   
Sbjct:   506 MFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGKDDSMQN 565

Query:    60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG 111
             LG+IP AISWLF+ I+E+K KTGARFSVR SA+E+    ++++DLLS  + G
Sbjct:   566 LGIIPCAISWLFKLINERKEKTGARFSVRVSAVEVWGKEENLRDLLSEVATG 617

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IEA

GO:0030010 "establishment of cell polarity" evidence=IEA

GO:0072092 "ureteric bud invasion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2447076 Kif26b "kinesin family member 26B" [Mus musculus (taxid:10090)]

 Score = 360 (131.8 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
 Identities = 64/112 (57%), Positives = 88/112 (78%)

Query:     1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
             MFAFDA+F  D  Q+E+C   +++VIQ+V++G+DGC+FCFGHA+LGKSYTM+G   S   
Sbjct:   506 MFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGRDDSMQN 565

Query:    60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG 111
             LG+IP AISWLF+ I+E+K KTGARFSVR SA+E+    ++++DLLS  + G
Sbjct:   566 LGIIPCAISWLFKLINERKEKTGARFSVRISAVEVWGKEENLRDLLSEVATG 617

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IGI;IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0072092 "ureteric bud invasion" evidence=IMP

UNIPROTKB|E1C4G2 E1C4G2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 361 (132.1 bits), Expect = 1.9e-31, P = 1.9e-31
 Identities = 64/112 (57%), Positives = 88/112 (78%)

Query:     1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
             MFAFDA+F  D  Q+E+C   +++VIQ+V++G+DGC+FCFGHA+LGKSYTM+G   S   
Sbjct:   506 MFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGKDDSMQN 565

Query:    60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG 111
             LG+IP AISWLF+ I+E+K KTGARFSVR SA+E+    ++++DLLS  + G
Sbjct:   566 LGIIPCAISWLFKLINERKEKTGARFSVRISAVEVWGKEENLRDLLSEVATG 617

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IEA

GO:0030010 "establishment of cell polarity" evidence=IEA

GO:0072092 "ureteric bud invasion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7TNC6	KI26B_MOUSE	No assigned EC number	0.5614	0.4688	0.0535	yes	N/A
Q2KJY2	KI26B_HUMAN	No assigned EC number	0.5614	0.4688	0.0536	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	241
cd00106	328	cd00106, KISc, Kinesin motor domain	3e-20
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	6e-20
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	8e-16
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	4e-13
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	1e-12
cd01375	334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	3e-12
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	6e-12
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	2e-11
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	6e-11
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	9e-11
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	2e-10
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	3e-09
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	6e-09
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	2e-08
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	6e-07
cd01367	322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	2e-05
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	0.001
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	0.003

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score = 87.3 bits (217), Expect = 3e-20
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 7/113 (6%)

Query: 1   MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
            F FD +F  +  Q ++  +    ++++V+ G +G +F +G    GK+YTM GSP+    
Sbjct: 46  SFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKD--- 102

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
            G+IP A+  LF  I E+K +    FSV  S +EI   ++ V DLLS     K
Sbjct: 103 PGIIPRALEDLFNLIDERK-EKNKSFSVSVSYLEI--YNEKVYDLLSPEPPSK 152

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score = 86.5 bits (215), Expect = 6e-20
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FD +F  +  Q  +       ++++V+ G +  +F +G    GK+YTM G P      
Sbjct: 42  FTFDRVFDPEATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGDPPEEEP- 100

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
           G+IP A+  LF  I E+K +    FSVR S +EI   ++ + DLLS  S  K  R+ 
Sbjct: 101 GIIPRALEDLFERIEERKER-KWSFSVRVSYLEI--YNEKIYDLLSPSSKKKKLRIR 154

Length = 326

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score = 74.9 bits (185), Expect = 8e-16
 Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 8/110 (7%)

Query: 2   FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FD +F     Q ++     + ++ +V+ G +  +F +G    GK+YTM+G+P S    
Sbjct: 48  FTFDKVFDATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMIGTPDS---P 104

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           G+IP A+  LF  I   K + G +FSV+ S +EI   ++ ++DLL+  S 
Sbjct: 105 GIIPRALKDLFEKI--DKREEGWQFSVKVSYLEI--YNEKIRDLLNPSSK 150

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score = 67.4 bits (165), Expect = 4e-13
 Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FDA++  +  Q ++       ++ +V+ G +G +F +G    GK++TM G  +     
Sbjct: 50  FTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELR 109

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
           G+IP++ + +F  I++ ++    +F VR S +EI   ++ V+DLL 
Sbjct: 110 GIIPNSFAHIFGHIAKAENV---QFLVRVSYLEI--YNEEVRDLLG 150

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 9/106 (8%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FD +F  +    E+       V+++ + G +G +F +G    GK++TM G  Q     
Sbjct: 42  FTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQE---P 98

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
           G+IP A+  +F+ I +   +    F +R S +EI   ++ +KDLLS
Sbjct: 99  GIIPLAVRDIFQRIQDTPDRE---FLLRVSYLEI--YNEKIKDLLS 139

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F FD +F +  Q E+  +    V+ + + G +G +F +G    GK++TM G  +S    G
Sbjct: 50  FKFDGVFHNASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRG 109

Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
           +IP A+  +FR ++ +  KT   ++V  S +EI   ++ + DLL  
Sbjct: 110 LIPRALEQVFREVAMRATKT---YTVHVSYLEI--YNEQLYDLLGD 150

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 334

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score = 63.7 bits (156), Expect = 6e-12
 Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 8/112 (7%)

Query: 2   FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F+FD +F  D  Q ++    +S ++Q+ + G + C+F +G    GK+YTM G P++    
Sbjct: 47  FSFDRVFDPDASQEDV-FEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPEN---P 102

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
           G+IP A+  LF    E K K G  +++ AS +EI + +  ++DLL+T    K
Sbjct: 103 GIIPRALEQLFNTAEELKEK-GWSYTITASMLEIYNET--IRDLLATKPAPK 151

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 15/118 (12%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG-------- 52
           + FD +F  +  Q E+ +  +S ++  V+ G +  +F +G    GK+YTM G        
Sbjct: 50  YTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGS 109

Query: 53  SPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           + + S   G+IP A+  LF  +  Q       +SV+ S +E+   ++ + DLLS+ S+
Sbjct: 110 TWELSPHAGIIPRALYQLFEKLESQ----NTEYSVKVSYLEL--YNEELFDLLSSESD 161

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F+FD +F  +  Q ++       ++  V++G +G +F +G    GK+YTM G P      
Sbjct: 45  FSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELK 104

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
           G+IP  +  +F  IS         F V+ S +EI    + ++DLL  
Sbjct: 105 GIIPRIVHDIFEHISSMDEN--LEFHVKVSYLEI--YMEKIRDLLDV 147

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score = 60.4 bits (147), Expect = 9e-11
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 8/110 (7%)

Query: 1   MFAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
            ++FD +F +   Q E+  +    ++  V++G +  +F +G    GK++TM+G+      
Sbjct: 55  KYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDP-- 112

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS 109
            G++   +  LF  I E+K      F V  S +EI   ++ ++DLLS  S
Sbjct: 113 -GLMVLTMKDLFDKIEERKDDK--EFEVSLSYLEI--YNETIRDLLSPSS 157

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 10/123 (8%)

Query: 1   MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS--- 56
           MF FD +  S+  Q ++  S    +++  +SG +G +F +G    GK+YTM+G   S   
Sbjct: 42  MFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDE 101

Query: 57  --SATLGVIPSAISWLFRCISEQKHKTGAR--FSVRASAIEISSSSQHVKDLLSTYSNGK 112
                 GVIP    +LF  I  ++ K G    F  + S +EI   ++ + DLL   S   
Sbjct: 102 SPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEI--YNEQITDLLDPTSRNL 159

Query: 113 FFR 115
             R
Sbjct: 160 KIR 162

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 8/115 (6%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG---SPQSS 57
           F FD +F     Q E+  + ++ ++  +  G +  +  +G    GK+YTM     + +  
Sbjct: 42  FTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDE 101

Query: 58  ATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
             +G+IP AI  +F+ I E+K +    F ++ S +E+   ++ V+DLLS  ++ K
Sbjct: 102 EEVGIIPRAIQHIFKKIDEKKDEP--DFQLKVSFLEL--YNEEVRDLLSPSTSEK 152

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 24  VIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTGA 83
           ++     G + CLF +G    GKSYTM+G  +     G+IP     LF+ I E K +   
Sbjct: 80  LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEK---GIIPRLCEELFQRI-ESKKEQNL 135

Query: 84  RFSVRASAIEISSSSQHVKDLLS 106
            + V  S +EI   ++ V+DLL+
Sbjct: 136 SYEVEVSYMEI--YNEKVRDLLN 156

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 10/117 (8%)

Query: 2   FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           + FDA +  E  Q +I +  +  ++  ++SG +  +F +G    GK++TM+G P      
Sbjct: 49  YQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNE---P 105

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
           G+IP  +S L R       K     +   S  EI   ++ V DLL         R  
Sbjct: 106 GLIPRTLSDLLR----MGRKQAWTGAFSMSYYEI--YNEKVYDLLEPAKKELPIRED 156

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 14/105 (13%)

Query: 2   FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F+F  +F     Q E        ++Q ++ G +  LF +G    GK+YTM GSP      
Sbjct: 57  FSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDG--- 113

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
           G++P ++  +F  I          +SV  S +EI   + ++ DLL
Sbjct: 114 GILPRSLDVIFNSIGG--------YSVFVSYVEI--YNNYIYDLL 148

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 2   FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FD +F +     E+  S +  +I  V  G     F +G    GK+YTM+G        
Sbjct: 53  FRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQ---E 109

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
           G+   A   +FR       +      V  S  EI      + DLL+
Sbjct: 110 GLYALAARDIFR----LLAQPNDDLGVTVSFFEIYGGK--LFDLLN 149

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 2   FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           +AFD +F     Q ++    +  +I +++ G +  +F +G    GK+YTM G+ +     
Sbjct: 58  YAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEE---P 114

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFR 115
           G+IP ++  LF  + +        F+V  S +EI   ++ + DLLS        R
Sbjct: 115 GIIPLSLKELFSKLEDL--SMTKDFAVSISYLEI--YNEKIYDLLSPNEESLNIR 165

Length = 568

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 18/110 (16%)

Query: 22  SDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKT 81
             ++Q+ + G + C+F +G    GK+YTM G  + +   G+IP  ++             
Sbjct: 13  GPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGA---GIIPRTVT-----DVIDLMDK 64

Query: 82  GARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMP 131
           G      A+      SS+          +   FR+ F  +       E P
Sbjct: 65  GNANRTTAATAMNEHSSR----------SHSVFRIHFGGKNALASATEQP 104

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
KOG4280|consensus	574		100.0
cd01373	337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	100.0
cd01370	338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	100.0
KOG0243|consensus	1041		100.0
KOG0245|consensus	1221		100.0
KOG0242|consensus	675		100.0
cd01368	345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	100.0
PLN03188	1320	kinesin-12 family protein; Provisional	100.0
cd01367	322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	100.0
cd01371	333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	100.0
cd01365	356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	100.0
cd01369	325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	100.0
KOG0240|consensus	607		100.0
cd01375	334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	100.0
cd01376	319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	100.0
cd01374	321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	100.0
cd01372	341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	100.0
cd01364	352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	100.0
KOG0239|consensus	670		100.0
cd01366	329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	100.0
PF00225	335	Kinesin: Kinesin motor domain; InterPro: IPR001752	100.0
smart00129	335	KISc Kinesin motor, catalytic domain. ATPase. Micr	100.0
cd00106	328	KISc Kinesin motor domain. This catalytic (head) d	100.0
KOG0241|consensus	1714		100.0
KOG0247|consensus	809		100.0
KOG0246|consensus	676		100.0
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	100.0
KOG0244|consensus	913		99.98
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	99.89
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	94.9
PRK06620	214	hypothetical protein; Validated	92.99
PRK06893	229	DNA replication initiation factor; Validated	92.98
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	91.94
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	91.19
PRK09087	226	hypothetical protein; Validated	91.15
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	91.04
PRK14086	617	dnaA chromosomal replication initiation protein; P	90.83
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	90.33
PRK14088	440	dnaA chromosomal replication initiation protein; P	90.18
PRK12377	248	putative replication protein; Provisional	90.02
PRK05642	234	DNA replication initiation factor; Validated	89.94
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	89.81
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	89.44
PRK08116	268	hypothetical protein; Validated	89.31
PRK00149	450	dnaA chromosomal replication initiation protein; R	89.24
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	89.21
PRK08084	235	DNA replication initiation factor; Provisional	89.15
cd01382	717	MYSc_type_VI Myosin motor domain, type VI myosins.	89.05
PRK00411	394	cdc6 cell division control protein 6; Reviewed	89.05
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	88.98
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	88.95
cd01380	691	MYSc_type_V Myosin motor domain, type V myosins. M	88.67
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	88.65
cd01386	767	MYSc_type_XVIII Myosin motor domain, type XVIII my	88.53
PRK07952	244	DNA replication protein DnaC; Validated	86.71
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	86.53
PRK06526	254	transposase; Provisional	85.98
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	85.84
PRK14087	450	dnaA chromosomal replication initiation protein; P	85.73
COG0593	408	DnaA ATPase involved in DNA replication initiation	85.54
PRK08903	227	DnaA regulatory inactivator Hda; Validated	83.81
PRK08181	269	transposase; Validated	82.48
PF13245	76	AAA_19: Part of AAA domain	82.47
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	82.44
PRK06835	329	DNA replication protein DnaC; Validated	82.34
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	82.29
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	81.8
PRK08939	306	primosomal protein DnaI; Reviewed	81.66
smart00382	148	AAA ATPases associated with a variety of cellular	81.36
PRK12422	445	chromosomal replication initiation protein; Provis	81.2
COG1484	254	DnaC DNA replication protein [DNA replication, rec	80.75
PRK10436	462	hypothetical protein; Provisional	80.35
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	80.29

>KOG4280|consensus

Probab=100.00  E-value=9.4e-52  Score=396.47  Aligned_cols=214  Identities=30%  Similarity=0.429  Sum_probs=185.2

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|+||.||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|++  +...|||||++++||..|+..++
T Consensus        53 ~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~--~~~~GiiPraf~~LF~~I~~~~~  130 (574)
T KOG4280|consen   53 SFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPD--PELRGLIPRAFEHLFRHIDERKE  130 (574)
T ss_pred             CceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCC--hhhCCchhHHHHHHHHHHHhccc
Confidence            599999999 999999999999999999999999999999999999999999994  56899999999999999999875


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYS-NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRND  157 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~  157 (241)
                      .  .+|.|+|||+|||  ||+|+|||++.. +.+.++++|+.|+||+|++++.|.+++++..+|. |..+|++++|.||.
T Consensus       131 ~--~~f~vrvS~lEiY--nE~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~  206 (574)
T KOG4280|consen  131 K--TRFLVRVSYLEIY--NESIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNE  206 (574)
T ss_pred             c--ceEEEEeehHHHH--hHHHHHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCc
Confidence            4  3899999999999  999999999987 5889999999999999999999999999999999 99999999999999


Q ss_pred             CCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHHH
Q psy9852         158 NSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       158 ~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      .|||    ||+..+..  ..+.+...+++    .|.|+  =+||||||||.|++     ..+++.+|.+|+.|+..=.+|
T Consensus       207 ~SsRSH~ift~~i~~~--~~~~~~~~~~~----~~rln--lvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aL  278 (574)
T KOG4280|consen  207 ESSRSHAIFTIHIESS--EKSDGGLMSGR----SSKLN--LVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISAL  278 (574)
T ss_pred             ccccceEEEEEEEEee--cccCCCccccc----cceee--eeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHH
Confidence            9999    77776661  22222333333    11233  37999999999997     677777777777777654443

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup

Probab=100.00  E-value=3.5e-48  Score=355.90  Aligned_cols=215  Identities=26%  Similarity=0.348  Sum_probs=172.6

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCC-----CCCCCchHHHHHHHHHHH
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS-----SATLGVIPSAISWLFRCI   74 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~-----~~~~GIipr~~~~LF~~i   74 (241)
                      .|.||+||+ +++|++||+.++.|+|+.+++|||+||||||||||||||||+|+...     ..++|||||++++||+.+
T Consensus        42 ~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i  121 (337)
T cd01373          42 MFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLI  121 (337)
T ss_pred             EEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHH
Confidence            499999999 99999999999999999999999999999999999999999998753     247899999999999998


Q ss_pred             Hhccc--CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCcc
Q psy9852          75 SEQKH--KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLI  151 (241)
Q Consensus        75 ~~~~~--~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~  151 (241)
                      +....  ..+..|.|.|||+|||  ||+|+|||++....+.+++++.++++++|++++.|.|++|+.++|+ |.++|+++
T Consensus       122 ~~~~~~~~~~~~~~v~~S~~EIy--ne~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~  199 (337)
T cd01373         122 QREEEKRGDGLKFLCKCSFLEIY--NEQITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVA  199 (337)
T ss_pred             HhhhhhcccCceEEEEEEEEeec--CCEeeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcc
Confidence            76532  1346899999999999  9999999999888899999999999999999999999999999999 99999999


Q ss_pred             ccCCCCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHH
Q psy9852         152 SNKRNDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       152 ~T~~N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      +|.+|+.||| +.++...+............+    -|.|.  -+||||||+..+++     ..+.|+.|.+.||+||
T Consensus       200 ~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~----~s~l~--~VDLAGSEr~~~~~-----~~g~~~~E~~~IN~SL  266 (337)
T cd01373         200 ATSMNSESSRSHAVFTCTIESWEKKASSTNIR----TSRLN--LVDLAGSERQKDDG-----AEGVRLKEAKNINKSL  266 (337)
T ss_pred             cCcCCCCCCCccEEEEEEEEEeecCCCCCcEE----EEEEE--EEECCCCCcccccC-----CccHhhhhhccccHHH
Confidence            9999999999 444444443211111100011    01122  26999999877653     3344555555555554

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup

Probab=100.00  E-value=9.6e-48  Score=353.13  Aligned_cols=209  Identities=22%  Similarity=0.268  Sum_probs=172.6

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|++.   ++|||||++++||+.++....
T Consensus        55 ~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~---~~Giipr~~~~LF~~i~~~~~  131 (338)
T cd01370          55 KYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDS---DPGLMVLTMKDLFDKIEERKD  131 (338)
T ss_pred             EEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCC---CCchHHHHHHHHHHhhhhccc
Confidence            499999999 9999999999999999999999999999999999999999999985   589999999999999998763


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                        ++.+.|.|||+|||  ||+|+|||++..+.+.+++++.++++++|++++.|.+++|+.++|+ |.++|++++|.+|+.
T Consensus       132 --~~~~~v~vS~~EIy--ne~v~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~  207 (338)
T cd01370         132 --DKEFEVSLSYLEIY--NETIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANAT  207 (338)
T ss_pred             --CceEEEEEEEEEEE--CCEEEECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCc
Confidence              47999999999999  9999999999888899999999999999999999999999999999 999999999999999


Q ss_pred             Cch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         159 SSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       159 SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      |||    |++..++.......+....      -|.|.  -+||||||+..+.+     ..+.|+.|...||+||+
T Consensus       208 SSRSH~i~~i~i~~~~~~~~~~~~~~------~s~l~--~VDLAGsEr~~~~~-----~~g~~~~E~~~IN~SL~  269 (338)
T cd01370         208 SSRSHAVLQITVRQKDRTASINQQVR------IGKLS--LIDLAGSERASATN-----NRGQRLKEGANINRSLL  269 (338)
T ss_pred             cCcceEEEEEEEEEEecCCCCCCcEE------EEEEE--EEECCCCccccccC-----CCCccccccchhhHHHH
Confidence            999    4433333321111111111      11222  26999999876643     33455555555555553

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec

>KOG0243|consensus

Probab=100.00  E-value=9.2e-49  Score=391.13  Aligned_cols=209  Identities=24%  Similarity=0.332  Sum_probs=175.8

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC-----CCCCCCchHHHHHHHHHHH
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ-----SSATLGVIPSAISWLFRCI   74 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~-----~~~~~GIipr~~~~LF~~i   74 (241)
                      +|+||.||+ .+.|++||+..|.|+|+.|+.|||||||||||||+||||||.|...     .+..+|||||++.+||+.+
T Consensus        96 ~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~L  175 (1041)
T KOG0243|consen   96 TFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTL  175 (1041)
T ss_pred             eeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHH
Confidence            599999999 9999999999999999999999999999999999999999999543     3568999999999999999


Q ss_pred             HhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCC---ceEEE-----ccCCcEEecCcEEEeCCCHHHHHHHHH-Hh
Q psy9852          75 SEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG---KFFRL-----CFLKRFHAEEDEEMPCPVPPPLHSNLL-TL  145 (241)
Q Consensus        75 ~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~---~~l~~-----~~~~g~~v~glt~v~V~s~~d~~~ll~-g~  145 (241)
                      +...    ..|+|+|||+|+|  ||.++|||++....   ..++.     +..+|++|.|+.++.|.++.|++++|+ |.
T Consensus       176 e~~~----~EYsvKVSfLELY--NEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs  249 (1041)
T KOG0243|consen  176 EAQG----AEYSVKVSFLELY--NEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGS  249 (1041)
T ss_pred             HhcC----CeEEEEEEehhhh--hHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhh
Confidence            9874    5999999999999  99999999887653   23333     347899999999999999999999999 99


Q ss_pred             cCCCccccCCCCCCch-hhhhceeeeCCCCCCc-ccccccccccccccccc---ccchhhhhhhhccccccccchhhHHH
Q psy9852         146 SRDSLISNKRNDNSSL-YSNSNERLHDPGGTGS-IKSFRNFGFGSGIQYCK---NDLETLEQYCKNDFNQSTWRNDRLEQ  220 (241)
Q Consensus       146 ~~R~~~~T~~N~~SSr-f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~  220 (241)
                      .+|++++|.||++||| ++++.+-+|--..+.. -.-         ++-||   ||||||     +-.++||++|.|--|
T Consensus       250 ~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geel---------vK~GKLNLVDLAGS-----ENI~RSGA~~~RArE  315 (1041)
T KOG0243|consen  250 KKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEEL---------VKIGKLNLVDLAGS-----ENISRSGARNGRARE  315 (1041)
T ss_pred             hHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhh---------Hhhcccceeecccc-----ccccccccccchhHH
Confidence            9999999999999999 6555555532221111 000         12233   599999     677888888888888


Q ss_pred             HHHhhHHHH
Q psy9852         221 LKREKRALL  229 (241)
Q Consensus       221 ~~~~~~~~~  229 (241)
                      ++.||+|||
T Consensus       316 AG~INqSLL  324 (1041)
T KOG0243|consen  316 AGEINQSLL  324 (1041)
T ss_pred             hhhhhHHHH
Confidence            888888887

>KOG0245|consensus

Probab=100.00  E-value=2.3e-48  Score=384.19  Aligned_cols=216  Identities=23%  Similarity=0.315  Sum_probs=181.4

Q ss_pred             CeecceecC-C-------CChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHH
Q psy9852           1 MFAFDAIFS-D-------EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR   72 (241)
Q Consensus         1 tF~FD~VF~-~-------a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~   72 (241)
                      .|+||++|| .       |+|..||+++..|+++.+++|||+||||||||||||||||+|... +.++|||||.|++||.
T Consensus        48 ~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~-~~e~GIIPrlCEeLF~  126 (1221)
T KOG0245|consen   48 KFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQE-PDEPGIIPRLCEELFS  126 (1221)
T ss_pred             ceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCC-CCCCCchhHHHHHHHH
Confidence            399999998 3       689999999999999999999999999999999999999999984 4589999999999999


Q ss_pred             HHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCC-CC-CCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCC
Q psy9852          73 CISEQKHKTGARFSVRASAIEISSSSQHVKDLLS-TY-SNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDS  149 (241)
Q Consensus        73 ~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~-~~-~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~  149 (241)
                      ++...+.. +..|.|.|||+|||  ||+|+|||+ |. +.++.+|++|--|+||++|+...|.|+.|+..||. |++.|+
T Consensus       127 ri~~nq~~-~~sy~VevSymEIY--cErVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRT  203 (1221)
T KOG0245|consen  127 RIADNQSQ-QMSYSVEVSYMEIY--CERVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRT  203 (1221)
T ss_pred             HHhhcccc-cceEEEEEeehhHH--HHHHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhh
Confidence            99998775 68999999999999  999999998 54 46679999999999999999999999999999999 999999


Q ss_pred             ccccCCCCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHH
Q psy9852         150 LISNKRNDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQ  220 (241)
Q Consensus       150 ~~~T~~N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~  220 (241)
                      +++|+||+.|||    |+++.-+..++..+| ..+-+    =|-|.+  +|||||||+..+|     .++--.+|.+|++
T Consensus       204 tAATnMNdtSSRSHaVFtIvftQk~~~~~~~-l~sek----~SKIsL--VDLAGSERasstGa~G~RLKEGa~INKSLtT  276 (1221)
T KOG0245|consen  204 TAATNMNDTSSRSHAVFTIVFTQKKHDQDTG-LDSEK----VSKISL--VDLAGSERASSTGANGDRLKEGANINKSLTT  276 (1221)
T ss_pred             hhhhccccccccceeEEEEEEEeeeccccCC-Cccee----eeeeeE--EeccCcccccccCCCccchhcccccchHHHH
Confidence            999999999999    887776666666555 11111    123555  8999999987653     2233345555555


Q ss_pred             HHHhhHH
Q psy9852         221 LKREKRA  227 (241)
Q Consensus       221 ~~~~~~~  227 (241)
                      |++.-.+
T Consensus       277 LGkVISA  283 (1221)
T KOG0245|consen  277 LGKVISA  283 (1221)
T ss_pred             HHHHHHH
Confidence            5554433

>KOG0242|consensus

Probab=100.00  E-value=1.4e-46  Score=370.43  Aligned_cols=190  Identities=24%  Similarity=0.304  Sum_probs=169.6

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      .|.||+||+ +++|++||+..++|+|.++++|+|+||||||||||||||||.|...   +|||||+++.+||+.|.... 
T Consensus        54 ~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~---~PGii~la~~dif~~I~~~~-  129 (675)
T KOG0242|consen   54 KYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSED---DPGIIPLAMKDIFEKIDKSG-  129 (675)
T ss_pred             ceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCC---CCCeeehHHHHHHHHHHhcC-
Confidence            499999999 9999999999999999999999999999999999999999999997   48999999999999999876 


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                        ...|.|.|||+|||  ||.|+|||++..+.+.+++|+.+|++|+||++..|.|++++.+||. |.++|+++.|.+|..
T Consensus       130 --~r~f~v~vSYlEIY--NE~I~DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~  205 (675)
T KOG0242|consen  130 --EREFSVRVSYLEIY--NERIRDLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQ  205 (675)
T ss_pred             --CceeEEEEEEEEEe--ccccccccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccc
Confidence              46999999999999  9999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             Cch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc
Q psy9852         159 SSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND  207 (241)
Q Consensus       159 SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (241)
                      ||| ++++...+..-+...+  + +...    +  +-+|||||||..+++
T Consensus       206 SSRSHaIl~i~i~s~~~~~~--~-~~s~----L--~lIDLAGSERas~T~  246 (675)
T KOG0242|consen  206 SSRSHAILRITVESRGREAS--S-RVSK----L--NLIDLAGSERASRTG  246 (675)
T ss_pred             cchhhheeeEEEEecccccc--c-hhhe----e--hhhhhhhhhhhhhhh
Confidence            999 7777666654433222  1 1111    1  347999999888763

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup

Probab=100.00  E-value=4e-46  Score=343.36  Aligned_cols=204  Identities=23%  Similarity=0.306  Sum_probs=165.4

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||||||||||||+|++.   ++|||||++++||+.+..   
T Consensus        56 ~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~---~~Gli~r~~~~lF~~~~~---  129 (345)
T cd01368          56 KFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPG---DGGILPRSLDVIFNSIGG---  129 (345)
T ss_pred             EeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHHh---
Confidence            499999999 9999999999999999999999999999999999999999999985   689999999999999765   


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCC------CceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccc
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSN------GKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLIS  152 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~------~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~  152 (241)
                           +.|.|||+|||  ||+|+|||++...      .+.+++++.++++++|++++.|.+++|+.++|. |.++|++++
T Consensus       130 -----~~v~~S~~EIy--ne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~  202 (345)
T cd01368         130 -----YSVFVSYVEIY--NNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAG  202 (345)
T ss_pred             -----eeEEEEEEEEe--CCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceecc
Confidence                 88999999999  9999999987653      578899999999999999999999999999999 999999999


Q ss_pred             cCCCCCCch-hhhhceeeeC--CCCCCc-cccccccccccccccc---cccchhhhhhhhccccccccchhhHHHHHHhh
Q psy9852         153 NKRNDNSSL-YSNSNERLHD--PGGTGS-IKSFRNFGFGSGIQYC---KNDLETLEQYCKNDFNQSTWRNDRLEQLKREK  225 (241)
Q Consensus       153 T~~N~~SSr-f~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (241)
                      |.+|+.||| +.++...+..  ....|. ...      ...+..+   -+||||||+..++     +..++|+.|...||
T Consensus       203 t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~------~~~~~~s~l~~VDLAGsEr~~~~-----~~~g~~~~E~~~IN  271 (345)
T cd01368         203 TKLNRESSRSHSVFTIKLVQAPGDSDGDVDQD------KDQITVSQLSLVDLAGSERTSRT-----QNTGERLKEAGNIN  271 (345)
T ss_pred             ccCcCCCCCceEEEEEEEEEeccCcccccccC------CCceEEEEEEEEecccccccccc-----cccchhhhhhhhhh
Confidence            999999999 4433333221  111111 000      0011122   2699999988875     22445555555555


Q ss_pred             HHH
Q psy9852         226 RAL  228 (241)
Q Consensus       226 ~~~  228 (241)
                      +||
T Consensus       272 ~SL  274 (345)
T cd01368         272 TSL  274 (345)
T ss_pred             HHH
Confidence            555

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a

>PLN03188 kinesin-12 family protein; Provisional

Probab=100.00  E-value=3.5e-46  Score=376.47  Aligned_cols=216  Identities=24%  Similarity=0.299  Sum_probs=177.4

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC-------CCCCCCchHHHHHHHHH
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ-------SSATLGVIPSAISWLFR   72 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~-------~~~~~GIipr~~~~LF~   72 (241)
                      +|.||+||+ +++|++||+.++.|+|+.+++|||+||||||||||||||||+|+..       ...++|||||++++||.
T Consensus       133 tFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~  212 (1320)
T PLN03188        133 TFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFA  212 (1320)
T ss_pred             EEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHH
Confidence            599999999 9999999999999999999999999999999999999999999753       23578999999999999


Q ss_pred             HHHhccc---CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCC
Q psy9852          73 CISEQKH---KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRD  148 (241)
Q Consensus        73 ~i~~~~~---~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R  148 (241)
                      .+.....   .....|.|+|||+|||  ||+|+|||++....+.+++++.++++|+|++++.|.+++++.++|. |..+|
T Consensus       213 ~I~e~q~k~~d~~~~y~V~vSyLEIY--NEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR  290 (1320)
T PLN03188        213 RINEEQIKHADRQLKYQCRCSFLEIY--NEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNR  290 (1320)
T ss_pred             HHHhhhhhccccccceEEEEEEEeee--cCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccc
Confidence            9875321   1246899999999999  9999999999888899999999999999999999999999999999 99999


Q ss_pred             CccccCCCCCCch-hhhhceeeeC--CCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhh
Q psy9852         149 SLISNKRNDNSSL-YSNSNERLHD--PGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREK  225 (241)
Q Consensus       149 ~~~~T~~N~~SSr-f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (241)
                      ++++|.+|..||| ++++...+..  ........+++.    |.|..  +|||||||+.++     +..+.|+.+.+.||
T Consensus       291 ~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~----SkLnL--VDLAGSER~kkT-----ga~G~RLkEA~~IN  359 (1320)
T PLN03188        291 RTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKT----SRINL--VDLAGSERQKLT-----GAAGDRLKEAGNIN  359 (1320)
T ss_pred             eeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEE----EEEEE--EECCCchhcccc-----CcccHHHHHHHHHh
Confidence            9999999999999 4444333321  111111111111    12332  799999998765     35677788888888


Q ss_pred             HHHH
Q psy9852         226 RALL  229 (241)
Q Consensus       226 ~~~~  229 (241)
                      +||+
T Consensus       360 KSLs  363 (1320)
T PLN03188        360 RSLS  363 (1320)
T ss_pred             HHHH
Confidence            8875

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group

Probab=100.00  E-value=1.3e-45  Score=336.85  Aligned_cols=203  Identities=22%  Similarity=0.190  Sum_probs=168.4

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..   ++|||||++++||+.++... 
T Consensus        52 ~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~---~~Glipr~~~~lf~~~~~~~-  127 (322)
T cd01367          52 TFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDEN---QEGLYALAARDIFRLLAQPN-  127 (322)
T ss_pred             eEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCC---cCccHHHHHHHHHHHHhccc-
Confidence            599999999 9999999999999999999999999999999999999999999985   58999999999999988764 


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                         ..+.|.|||+|||  ||+|+|||++ .+.+.+++++.++++++|+++++|.|++|+.++|+ |.++|++++|.+|+.
T Consensus       128 ---~~~~v~~S~~EIy--~e~v~DLL~~-~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~  201 (322)
T cd01367         128 ---DDLGVTVSFFEIY--GGKLFDLLND-RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQ  201 (322)
T ss_pred             ---cccEEEEEEEeee--cCchhhhccC-ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCC
Confidence               4899999999999  9999999988 45688899999999999999999999999999999 999999999999999


Q ss_pred             Cch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc------ccccccchhhHHHHHHh
Q psy9852         159 SSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND------FNQSTWRNDRLEQLKRE  224 (241)
Q Consensus       159 SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~  224 (241)
                      ||| +.++...+.....         ...-|.|.  -+||||+|+..+.+      ..++.++|.+|..|++.
T Consensus       202 SSRSH~i~~i~v~~~~~---------~~~~s~l~--~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~v  263 (322)
T cd01367         202 SSRSHAILQIILKNKKL---------NKLLGKLS--FIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKEC  263 (322)
T ss_pred             cccceEEEEEEEEEecC---------CeeEEEEE--EeecCCccccccccccchhhHHhHhHHhHHHHHHHHH
Confidence            999 5544444432222         00111222  37999999876543      33444444444444443

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins

Probab=100.00  E-value=4.3e-45  Score=334.77  Aligned_cols=215  Identities=21%  Similarity=0.297  Sum_probs=174.5

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+.++.|+|+++++|+|+||||||++||||||||+|+..+...+|||||++++||+.++....
T Consensus        49 ~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~  128 (333)
T cd01371          49 VFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN  128 (333)
T ss_pred             eeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC
Confidence            599999999 9999999999999999999999999999999999999999999987667899999999999999987654


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYS-NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRND  157 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~  157 (241)
                         ..+.|.|||+|||  ||+|+|||++.. +.+.+++++.++++|+|++++.|.+++++..+|. |.++|++++|.+|+
T Consensus       129 ---~~~~v~~S~~Eiy--~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~  203 (333)
T cd01371         129 ---VQFLVRVSYLEIY--NEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNE  203 (333)
T ss_pred             ---ccEEEEEEEEEee--CCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccC
Confidence               5899999999999  999999998876 5678999999999999999999999999999999 99999999999999


Q ss_pred             CCch-hhhhceeeeCCCC--CCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHH
Q psy9852         158 NSSL-YSNSNERLHDPGG--TGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRA  227 (241)
Q Consensus       158 ~SSr-f~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  227 (241)
                      .||| +.++...+.....  .+..     ....|.|..  +||||+|++.+++     +.++.++|..|..|++.=++
T Consensus       204 ~ssRSH~i~~i~v~~~~~~~~~~~-----~~~~s~L~~--VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~a  274 (333)
T cd01371         204 DSSRSHSIFTITIECSEKGEDGEN-----HIRVGKLNL--VDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISA  274 (333)
T ss_pred             CCCCCcEEEEEEEEEEeccCCCCC-----cEEEEEEEE--EECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHH
Confidence            9999 4444333321111  0010     001112222  6999999987653     23444555555555544443

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins

Probab=100.00  E-value=8.4e-45  Score=335.56  Aligned_cols=211  Identities=23%  Similarity=0.293  Sum_probs=171.4

Q ss_pred             CeecceecC-C-------CChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHH
Q psy9852           1 MFAFDAIFS-D-------EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR   72 (241)
Q Consensus         1 tF~FD~VF~-~-------a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~   72 (241)
                      +|.||+||+ +       ++|++||+.++.|+|+++++|+|+||||||||||||||||+|+..   ++|||||++++||+
T Consensus        49 ~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~---~~Gli~r~~~~Lf~  125 (356)
T cd01365          49 SFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE---EKGIIPRLCEELFQ  125 (356)
T ss_pred             EEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHH
Confidence            599999999 8       999999999999999999999999999999999999999999886   58999999999999


Q ss_pred             HHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC---CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCC
Q psy9852          73 CISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS---NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRD  148 (241)
Q Consensus        73 ~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~---~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R  148 (241)
                      .++..... +..+.|.|||+|||  ||+|+|||++..   ..+.+++++..+++++|++++.|.|++|+.++|. |.++|
T Consensus       126 ~~~~~~~~-~~~~~v~~S~~EIy--~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R  202 (356)
T cd01365         126 RIESKKEQ-NLSYEVEVSYMEIY--NEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSR  202 (356)
T ss_pred             HHhhcccc-CceEEEEEEEEEEE--CCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence            99886543 56899999999999  999999998885   5678899999999999999999999999999999 99999


Q ss_pred             CccccCCCCCCch-hhhhceeeeCCC--CCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhh
Q psy9852         149 SLISNKRNDNSSL-YSNSNERLHDPG--GTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREK  225 (241)
Q Consensus       149 ~~~~T~~N~~SSr-f~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (241)
                      ++++|.+|..||| +.++...+....  .........    -|.|  .-+||||+|+..+++     ..+.|+.|...||
T Consensus       203 ~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~----~s~l--~~VDLAGsEr~~~~~-----~~~~~~~E~~~IN  271 (356)
T cd01365         203 TTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEK----VSKI--SLVDLAGSERASSTG-----AEGDRLKEGSNIN  271 (356)
T ss_pred             cccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceE----EEEE--Eeeeccccccccccc-----ccchhhHHHHHHh
Confidence            9999999999999 443333332111  100000000    0112  236999999887763     3345555555555


Q ss_pred             HHH
Q psy9852         226 RAL  228 (241)
Q Consensus       226 ~~~  228 (241)
                      +||
T Consensus       272 ~SL  274 (356)
T cd01365         272 KSL  274 (356)
T ss_pred             HHH
Confidence            554

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

Probab=100.00  E-value=5.6e-45  Score=332.59  Aligned_cols=211  Identities=24%  Similarity=0.332  Sum_probs=178.7

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+..+.|+|+.+++|+|+||||||++||||||||+|+..+...+|||||++++||+.+.....
T Consensus        44 ~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~  123 (325)
T cd01369          44 TFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDE  123 (325)
T ss_pred             EEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccC
Confidence            599999999 9999999999999999999999999999999999999999999998666899999999999999988643


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                        +..+.|.|||+|||  ||+++|||++....+.+++++.++++++|++++.|.|++|+..+|. +.++|++++|.+|+.
T Consensus       124 --~~~~~v~~S~~EIy--~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~  199 (325)
T cd01369         124 --NLEFHVKVSYLEIY--MEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEE  199 (325)
T ss_pred             --CceEEEEEEEEEEE--CCChhhcccCccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCc
Confidence              46899999999999  9999999999888899999999999999999999999999999999 999999999999999


Q ss_pred             Cch-hhhhceeeeCCC-CCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         159 SSL-YSNSNERLHDPG-GTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       159 SSr-f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      ||| +.++...+.... ..+..       ..|.|.  -+||||+|+..+     .+..+.++.+.+.||+||.
T Consensus       200 ssRSH~i~~i~v~~~~~~~~~~-------~~s~l~--~VDLAGsE~~~~-----~~~~~~~~~e~~~in~sl~  258 (325)
T cd01369         200 SSRSHSIFLITLKQENVETGSK-------KRGKLF--LVDLAGSEKVSK-----TGAEGQTLEEAKKINKSLS  258 (325)
T ss_pred             cccccEEEEEEEEEEecCCCCE-------EEEEEE--EEECCCCCcccc-----cCCcchhHHHHHHHhHHHH
Confidence            999 554444443211 11110       111222  279999998765     3456677777777777764

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c

>KOG0240|consensus

Probab=100.00  E-value=9e-46  Score=349.70  Aligned_cols=211  Identities=22%  Similarity=0.279  Sum_probs=181.9

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||. +++|++||+..++|+|+.|+.|||+||||||||||||||||.|...|+...|||||++++||..|.....
T Consensus        50 ~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~  129 (607)
T KOG0240|consen   50 TYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEE  129 (607)
T ss_pred             cceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcc
Confidence            599999999 9999999999999999999999999999999999999999999999877889999999999999998764


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                        +.+|.|.|||+|||  +|+|+|||++.+.++.+++|...+++|+|+++..|.+++++.+.++ |..+|+++.|+||.+
T Consensus       130 --n~efhVkVsy~EIY--mEKi~DLL~~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~  205 (607)
T KOG0240|consen  130 --NLEFHVKVSYFEIY--MEKIRDLLDPEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEH  205 (607)
T ss_pred             --cceEEEEEEeehhh--hhHHHHHhCcccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhcccccc
Confidence              47999999999999  9999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             Cch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHH
Q psy9852         159 SSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       159 SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      ||| +.++..-+.-....--.+  +    .|.+-.  |||||||.+.|+     |+-+.-|++++.||+||
T Consensus       206 sSRSHsIF~i~VkQ~n~e~~~~--~----~gkLyL--VDLaGSEkvsKt-----ga~g~vleEaK~INkSL  263 (607)
T KOG0240|consen  206 SSRSHSIFLIHVKQENVEDKRK--L----SGKLYL--VDLAGSEKVSKT-----GAEGAVLEEAKNINKSL  263 (607)
T ss_pred             ccccceEEEEEEEeccccchhh--c----cccEEE--EEcccccccCCC-----CccchhHHHHhhhhhhH
Confidence            999 555444443332211110  0    001111  699999666654     67788888888888887

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

Probab=100.00  E-value=1.2e-44  Score=331.93  Aligned_cols=210  Identities=21%  Similarity=0.313  Sum_probs=171.0

Q ss_pred             CeecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhcccC
Q psy9852           1 MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHK   80 (241)
Q Consensus         1 tF~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~~   80 (241)
                      +|.||+||+.++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+..+..++|||||++++||+.++...  
T Consensus        49 ~f~FD~vf~~~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~--  126 (334)
T cd01375          49 SFKFDGVFHNASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRA--  126 (334)
T ss_pred             EEEcCcccCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhcc--
Confidence            499999999899999999999999999999999999999999999999999998755679999999999999998764  


Q ss_pred             CCcEEEEEEEEEEEeCCCCeEEEcCCCCC------CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCcccc
Q psy9852          81 TGARFSVRASAIEISSSSQHVKDLLSTYS------NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISN  153 (241)
Q Consensus        81 ~~~~~~V~vS~lEIY~~nE~v~DLL~~~~------~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T  153 (241)
                       +..+.|.+||+|||  ||+|+|||++..      +.+.+++++.++++|+|++++.|.+++|+..+|. |..+|++++|
T Consensus       127 -~~~~~v~~S~~Eiy--~e~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t  203 (334)
T cd01375         127 -TKTYTVHVSYLEIY--NEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAET  203 (334)
T ss_pred             -CcceEEEEEEEEEE--CCEeecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccC
Confidence             35899999999999  999999998884      5578899999999999999999999999999999 9999999999


Q ss_pred             CCCCCCch-hhhhceeeeCC--CCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHH
Q psy9852         154 KRNDNSSL-YSNSNERLHDP--GGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKR  223 (241)
Q Consensus       154 ~~N~~SSr-f~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~  223 (241)
                      .+|+.||| ++++...+...  ...+...      .-|.|.  -+||||+|+..+++     +.++.++|.+|..|++
T Consensus       204 ~~n~~sSRSH~i~~l~v~~~~~~~~~~~~------~~s~l~--~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~  273 (334)
T cd01375         204 SMNQASSRSHCIFTIHLESRSREAGSEVV------RLSKLN--LVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQ  273 (334)
T ss_pred             cCcCCcCcCeEEEEEEEEEEecCCCCCce------EEEEEE--EEECCCCCccccccCchhhhhhhhhhhhhHHHHHH
Confidence            99999999 44444433311  1100000      001122  26999999887753     3444444444444443

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup

Probab=100.00  E-value=2e-44  Score=328.57  Aligned_cols=205  Identities=21%  Similarity=0.271  Sum_probs=172.4

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..   ++|||||++++||+.++... 
T Consensus        48 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~---~~Glipr~~~~Lf~~~~~~~-  123 (319)
T cd01376          48 KYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPN---EPGLIPRTLSDLLRMGRKQA-  123 (319)
T ss_pred             EEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcC---ccchHHHHHHHHHHHHhhcc-
Confidence            599999999 9999999999999999999999999999999999999999999986   58999999999999887653 


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                         +.+.|.+||+|||  ||+|+|||++....+.+++++.++++++|+++++|.+++|+.+++. |.++|++++|.+|+.
T Consensus       124 ---~~~~v~~S~~EIy--~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~  198 (319)
T cd01376         124 ---WTGAFSMSYYEIY--NEKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDN  198 (319)
T ss_pred             ---ccceEEEEEEEEE--CCEeeEccCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCc
Confidence               5899999999999  9999999999888899999999999999999999999999999999 999999999999999


Q ss_pred             Cch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         159 SSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       159 SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      ||| +.++...+.......        ..-|.|..  +||||+|+..++     +..+.|+.+.+.||+||+
T Consensus       199 SSRSH~i~~i~v~~~~~~~--------~~~s~l~~--VDLAGsE~~~~~-----~~~g~~~~e~~~iN~Sl~  255 (319)
T cd01376         199 SSRSHAVLRIKVTQPASNI--------QLEGKLNL--IDLAGSEDNRRT-----GNEGIRLKESAAINSSLF  255 (319)
T ss_pred             cCCCeEEEEEEEEEECCCc--------eEEEEEEE--EECCCCCccccc-----CCccchhhhhhhhhhhHH
Confidence            999 444433332221111        11122333  799999875543     345666666666666653

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

Probab=100.00  E-value=2.1e-44  Score=328.48  Aligned_cols=212  Identities=23%  Similarity=0.273  Sum_probs=174.9

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      .|.||+||+ +++|++||+..+.|+|+.+++|+|+||||||++||||||||+|+..   ++|||||++++||+.+.... 
T Consensus        41 ~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~---~~Gli~r~~~~lf~~~~~~~-  116 (321)
T cd01374          41 SFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQ---EPGIIPLAVRDIFQRIQDTP-  116 (321)
T ss_pred             EEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCC---CCchHHHHHHHHHHHHhccc-
Confidence            499999999 9999999999999999999999999999999999999999999985   58999999999999998765 


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                        +..|.|.|||+|||  ||+|+|||++....+.+++++.++++++|++++.|.|++++.++|+ |.++|++++|.+|++
T Consensus       117 --~~~~~v~~S~~Eiy--~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~  192 (321)
T cd01374         117 --DREFLLRVSYLEIY--NEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNER  192 (321)
T ss_pred             --CceEEEEEEEEEEE--cCEeEEccCCCCCCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCc
Confidence              35899999999999  9999999999988899999999999999999999999999999999 999999999999999


Q ss_pred             Cch-hhhhceeeeCCCCCCc--cccccccccccccccccccchhhhhhhhcc----ccccccchhhHHHHHHhhHH
Q psy9852         159 SSL-YSNSNERLHDPGGTGS--IKSFRNFGFGSGIQYCKNDLETLEQYCKND----FNQSTWRNDRLEQLKREKRA  227 (241)
Q Consensus       159 SSr-f~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  227 (241)
                      ||| +.++...+........  .....     |.|  .-+||||+|+..+.+    ..|+.++|..|..|++.=++
T Consensus       193 ssRSH~i~~i~v~~~~~~~~~~~~~~~-----s~l--~~vDLAGsE~~~~~~~~~~~~e~~~iN~Sl~~L~~vi~a  261 (321)
T cd01374         193 SSRSHTIFQLTIESRERGDSESGTVRV-----STL--NLIDLAGSERASQTGAGERRKEGSFINKSLLTLGTVISK  261 (321)
T ss_pred             cccccEEEEEEEEEEecCCCCCCcEEE-----EEE--EEEECCCCCccccCCCCccccccchhhhHHHHHHHHHHH
Confidence            999 4444444332221110  00000     111  236999999876663    44555666666666655444

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily

Probab=100.00  E-value=1.3e-43  Score=325.45  Aligned_cols=218  Identities=23%  Similarity=0.296  Sum_probs=174.0

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCC---CCCCCchHHHHHHHHHHHHh
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS---SATLGVIPSAISWLFRCISE   76 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~---~~~~GIipr~~~~LF~~i~~   76 (241)
                      +|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+...   ..++|||||++++||+.++.
T Consensus        41 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~  120 (341)
T cd01372          41 SFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDE  120 (341)
T ss_pred             EEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHh
Confidence            599999999 99999999999999999999999999999999999999999998642   45799999999999999998


Q ss_pred             cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCC---CCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccc
Q psy9852          77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTY---SNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLIS  152 (241)
Q Consensus        77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~---~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~  152 (241)
                      ...  +.++.|.|||+|||  ||+|+|||++.   ...+.+++++.++++++|++++.|.+++|+.++|. +.++|+..+
T Consensus       121 ~~~--~~~~~v~vS~~EIy--~e~v~DLL~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~  196 (341)
T cd01372         121 KKD--EPDFQLKVSFLELY--NEEVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTAS  196 (341)
T ss_pred             ccc--cceEEEEEEEEEeE--CCeeecCCCCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhccccc
Confidence            754  36899999999999  99999999887   46789999999999999999999999999999999 999999999


Q ss_pred             cCCCCCCch-hh---hhceeeeCCCCCCc-cccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHH
Q psy9852         153 NKRNDNSSL-YS---NSNERLHDPGGTGS-IKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRA  227 (241)
Q Consensus       153 T~~N~~SSr-f~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (241)
                      |.+|+.||| +.   +...+........+ ...-..-...|.|.  -+||||+|+..+++     ..++|+.|...||++
T Consensus       197 t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~--~VDLAGsE~~~~~~-----~~~~~~~e~~~in~s  269 (341)
T cd01372         197 TAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFH--FVDLAGSERLKKTG-----ATGDRLKEGISINSG  269 (341)
T ss_pred             ccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEE--EEECCCCccccccc-----CchhHhHHHHHHhHH
Confidence            999999999 33   33333322110000 00000001111222  26999999876543     345666666666666


Q ss_pred             HH
Q psy9852         228 LL  229 (241)
Q Consensus       228 ~~  229 (241)
                      |+
T Consensus       270 l~  271 (341)
T cd01372         270 LL  271 (341)
T ss_pred             HH
Confidence            54

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

Probab=100.00  E-value=2.2e-43  Score=325.45  Aligned_cols=211  Identities=23%  Similarity=0.293  Sum_probs=171.4

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCC--------CCCCCchHHHHHHHH
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS--------SATLGVIPSAISWLF   71 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~--------~~~~GIipr~~~~LF   71 (241)
                      +|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+...        ...+|||||++++||
T Consensus        49 ~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf  128 (352)
T cd01364          49 TYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLF  128 (352)
T ss_pred             eEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHH
Confidence            599999999 99999999999999999999999999999999999999999998654        356899999999999


Q ss_pred             HHHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCC---CCCceEEEc--cCCcEEecCcEEEeCCCHHHHHHHHH-Hh
Q psy9852          72 RCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTY---SNGKFFRLC--FLKRFHAEEDEEMPCPVPPPLHSNLL-TL  145 (241)
Q Consensus        72 ~~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~---~~~~~l~~~--~~~g~~v~glt~v~V~s~~d~~~ll~-g~  145 (241)
                      +.++..    +..+.|.|||+|||  ||+|+|||++.   .+.+.++++  ..++++|+|++++.|.+++|+.++|+ |.
T Consensus       129 ~~~~~~----~~~~~v~~S~~EIy--~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~  202 (352)
T cd01364         129 EKLESQ----NTEYSVKVSYLELY--NEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGS  202 (352)
T ss_pred             HHHHhc----cceeEEEEEEEEee--CCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHh
Confidence            999876    35899999999999  99999999887   466788998  58999999999999999999999999 99


Q ss_pred             cCCCccccCCCCCCch-hhhhceeee--CCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHH
Q psy9852         146 SRDSLISNKRNDNSSL-YSNSNERLH--DPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLK  222 (241)
Q Consensus       146 ~~R~~~~T~~N~~SSr-f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  222 (241)
                      ++|++++|.+|+.||| ++++...+.  +....+. ...    ..|.|..  +||||+|+..+.+     ..+.|+.+..
T Consensus       203 ~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~-~~~----~~s~l~~--VDLAGsE~~~~~~-----~~~~~~~e~~  270 (352)
T cd01364         203 AKRKTAATLMNDQSSRSHSIFSITIHIKETTISGE-ELV----KIGKLNL--VDLAGSENIGRSG-----AENKRAREAG  270 (352)
T ss_pred             hhcccccCcCCCCCCCCceEEEEEEEEeccCCCCC-ccE----EEEEEEE--EECCCcccccccc-----CcchhhHHHh
Confidence            9999999999999999 433333222  1111111 000    1122332  6999999876553     3445666666


Q ss_pred             HhhHHHH
Q psy9852         223 REKRALL  229 (241)
Q Consensus       223 ~~~~~~~  229 (241)
                      .||+||+
T Consensus       271 ~iN~SL~  277 (352)
T cd01364         271 NINQSLL  277 (352)
T ss_pred             hhhHHHH
Confidence            6666654

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d

>KOG0239|consensus

Probab=100.00  E-value=2.6e-44  Score=353.61  Aligned_cols=218  Identities=26%  Similarity=0.351  Sum_probs=184.1

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      .|.||+||+ .++|++||. -+.|+|.++++|||+||||||||||||||||.|+  .+.++|||||++++||+.+.....
T Consensus       361 ~f~fdkVf~p~~sQ~~VF~-e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~  437 (670)
T KOG0239|consen  361 SFKFDKVFGPLASQDDVFE-EVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKS  437 (670)
T ss_pred             cceeeeecCCcccHHHHHH-HHHHHHHHHhcCcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhcc
Confidence            499999999 999999998 5899999999999999999999999999999996  234699999999999999998765


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC--CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYS--NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRN  156 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~--~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N  156 (241)
                        +|.|.+.+||+|||  ||.|+|||++..  ....|++++++..+|++++.++|.+.+++..+|+ |.++|++++|.+|
T Consensus       438 --g~~y~~~~s~~EIY--Ne~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~N  513 (670)
T KOG0239|consen  438 --GWKYDKTVSMLEIY--NEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASN  513 (670)
T ss_pred             --CceEEeeeehhHHH--HHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccc
Confidence              79999999999999  999999998874  5678899999999999999999999999999999 9999999999999


Q ss_pred             CCCch-hhhhceeeeCC-CCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHHH----
Q psy9852         157 DNSSL-YSNSNERLHDP-GGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALLI----  230 (241)
Q Consensus       157 ~~SSr-f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  230 (241)
                      .+||| +.++..++.-- ..+|.... +      -+..  +|||||||+     ..++.++.||-++..|||||-.    
T Consensus       514 e~SSRSH~v~~v~v~g~~~~t~~~~~-g------~l~L--VDLAGSER~-----~~s~~tG~RlkE~Q~INkSLS~LgdV  579 (670)
T KOG0239|consen  514 ERSSRSHLVFRVRIRGINELTGIRVT-G------VLNL--VDLAGSERV-----SKSGVTGERLKEAQNINKSLSALGDV  579 (670)
T ss_pred             hhhhccceEEEEEEeccccCcccccc-c------ceeE--eecccCccc-----CcCCCchhhhHHHHHhchhhhhhHHH
Confidence            99999 66555555322 11111100 0      0122  699999994     4488999999999999999843    


Q ss_pred             --Hhhhccccc
Q psy9852         231 --ELAATKTHL  239 (241)
Q Consensus       231 --~~~~~~~~~  239 (241)
                        -||....|.
T Consensus       580 i~AL~~k~~Hi  590 (670)
T KOG0239|consen  580 ISALASKRSHI  590 (670)
T ss_pred             HHHHhhcCCCC
Confidence              455555554

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

Probab=100.00  E-value=1.1e-42  Score=317.80  Aligned_cols=209  Identities=26%  Similarity=0.395  Sum_probs=172.8

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+. +.|+|+++++|+|+||||||++||||||||+|+..   ++||+||++++||+.++...+
T Consensus        46 ~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~---~~Gli~r~~~~lf~~~~~~~~  121 (329)
T cd01366          46 SFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPE---NPGIIPRALEQLFNTAEELKE  121 (329)
T ss_pred             EEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCC---CCCcHHHHHHHHHHHHHhhhc
Confidence            499999999 9999999996 69999999999999999999999999999999985   589999999999999988765


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCC---CCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTY---SNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR  155 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~---~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~  155 (241)
                      . +..+.|.+||+|||  ||+++|||++.   .+.+.+++++.++++++|++++.|.|++|+.+++. +.++|.++.|.+
T Consensus       122 ~-~~~~~v~~S~~EIy--~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~  198 (329)
T cd01366         122 K-GWSYTITASMLEIY--NETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNM  198 (329)
T ss_pred             c-CceEEEEEEEEEEE--CCEeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccc
Confidence            2 57999999999999  99999999987   57789999999999999999999999999999999 999999999999


Q ss_pred             CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      |+.||| +.++...+......+...      ..|.|..  +||||+|+..+.     +..+.|+.|.+.||+||+
T Consensus       199 n~~sSRsH~i~~i~v~~~~~~~~~~------~~s~l~~--VDLaGsE~~~~~-----~~~~~~~~e~~~in~Sl~  260 (329)
T cd01366         199 NEHSSRSHAVFQLKIRGTNLQTGEQ------TRGKLNL--VDLAGSERLKKS-----GATGDRLKEAQAINKSLS  260 (329)
T ss_pred             cCCCCCccEEEEEEEEEEcCCCCcE------EEEEEEE--EECCCCcccccc-----cccchhhHhHhhhhhHHH
Confidence            999999 554444443111111100      1112222  699999988765     344556666666666654

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=100.00  E-value=8.6e-43  Score=318.42  Aligned_cols=214  Identities=28%  Similarity=0.347  Sum_probs=170.2

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||++||||||||+|+. +..++|||||++++||+.++....
T Consensus        42 ~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~-~~~~~Gli~~~~~~lf~~~~~~~~  120 (335)
T PF00225_consen   42 SFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGSN-DPSEPGLIPRALRDLFSQIEERKE  120 (335)
T ss_dssp             EEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBST-STTTBSHHHHHHHHHHHHHHHHTT
T ss_pred             EEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeeccccccccccccccc-cccccchhhhHHHHHhhhhccccc
Confidence            499999999 999999999999999999999999999999999999999999992 124799999999999999998765


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC----CCceEEEccCCc-EEecCcEEEeCCCHHHHHHHHH-HhcCCCcccc
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYS----NGKFFRLCFLKR-FHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISN  153 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~----~~~~l~~~~~~g-~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T  153 (241)
                      ..+..+.|.|||+|||  ||+|+|||++..    +.+.+++++..| ++++|+++++|.+++++..+|. |.++|++..|
T Consensus       121 ~~~~~~~v~vS~~EIy--~e~v~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t  198 (335)
T PF00225_consen  121 KSGYEFSVSVSYLEIY--NEKVYDLLSPNNSKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTAST  198 (335)
T ss_dssp             TSTEEEEEEEEEEEEE--TTEEEETTSTTSSSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSS
T ss_pred             cccccccccccchhhh--hhhhhhhcCccccccccccceeeccccccceeeccccccccccccccccccchhhccccccc
Confidence            3346899999999999  999999999883    457889999977 9999999999999999999999 9999999999


Q ss_pred             CCCCCCch-hhhhc---eeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHH
Q psy9852         154 KRNDNSSL-YSNSN---ERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       154 ~~N~~SSr-f~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      .+|..||| +.++.   ++.......... ...    -|.|..  +||||+|+..+.+.    ..++++.+...||+||
T Consensus       199 ~~n~~sSRSH~i~~i~v~~~~~~~~~~~~-~~~----~s~l~~--vDLaGsE~~~~~~~----~~~~~~~e~~~in~Sl  266 (335)
T PF00225_consen  199 KMNARSSRSHAIFTIHVEQKDRDPSDDEE-SVK----HSRLTF--VDLAGSERLKKSGA----SDGQRLKESSNINKSL  266 (335)
T ss_dssp             SCTHHGGGSEEEEEEEEEEEETTTTTEEE-EEE----EEEEEE--EEEEESTGGCGCSS----SSHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccc-cee----ecceee--eecccccccccccc----cccccccccceecchh
Confidence            99999999 33333   333222222111 111    112233  79999998877753    1234444444444444

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....

>smart00129 KISc Kinesin motor, catalytic domain

Probab=100.00  E-value=4e-41  Score=307.82  Aligned_cols=213  Identities=23%  Similarity=0.333  Sum_probs=178.7

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+.++.|+|+.+++|+|+|||+||++||||||||+|+..   ++||+|+++++||+.+.....
T Consensus        47 ~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~---~~Gli~~~~~~Lf~~~~~~~~  123 (335)
T smart00129       47 KFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPD---SPGIIPRALKDLFEKIDKLEE  123 (335)
T ss_pred             EEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCC---CCCHHHHHHHHHHHHhhhccc
Confidence            499999999 9999999999999999999999999999999999999999999875   589999999999999977653


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                        +..+.|.|||+|||  +|+|+|||++.++.+.+++++.++++++|++++.|.|++++.++|. +.++|.+++|.+|+.
T Consensus       124 --~~~~~v~~S~~ei~--~e~v~DLL~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~  199 (335)
T smart00129      124 --GWQFQVKVSYLEIY--NEKIRDLLNPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEE  199 (335)
T ss_pred             --CceEEEEEEEEEEE--CCEEEECcCCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCC
Confidence              46899999999999  9999999999988899999999999999999999999999999999 999999999999999


Q ss_pred             Cch-hhhhceeee--CCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHHH
Q psy9852         159 SSL-YSNSNERLH--DPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       159 SSr-f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      ||| +.++...+.  ........      ...|.|.  -+||||+|+..+.+     .+|..++|..|..|++.=++|
T Consensus       200 ssRsH~i~~l~v~~~~~~~~~~~------~~~s~l~--~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l  269 (335)
T smart00129      200 SSRSHAVFTITVESKIKNSSSGS------GKASKLN--LVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINAL  269 (335)
T ss_pred             CCcceEEEEEEEEEEecCCCCCC------EEEEEEE--EEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHH
Confidence            999 444443333  11110000      0111122  36999999887654     566777788888877766665

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.

>cd00106 KISc Kinesin motor domain

Probab=100.00  E-value=4.4e-41  Score=306.36  Aligned_cols=211  Identities=28%  Similarity=0.351  Sum_probs=170.7

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||++||||||||+|+..   ++||||+++++||+.+.....
T Consensus        46 ~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~---~~Gli~~~~~~Lf~~~~~~~~  122 (328)
T cd00106          46 SFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPK---DPGIIPRALEDLFNLIDERKE  122 (328)
T ss_pred             EEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHhhccc
Confidence            499999999 9999999999999999999999999999999999999999999986   589999999999999988753


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCC--CCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTY--SNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRN  156 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~--~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N  156 (241)
                       .+..+.|.+||+|||  +|+|+|||++.  ...+.+++++.++++++|++++.|.|++|+.++|. +.++|.+.+|.+|
T Consensus       123 -~~~~~~v~~S~~Ei~--~e~v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n  199 (328)
T cd00106         123 -KNKSFSVSVSYLEIY--NEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMN  199 (328)
T ss_pred             -cCceEEEEEEEEEEE--CCEeEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCC
Confidence             145899999999999  99999999998  88889999999999999999999999999999999 9999999999999


Q ss_pred             CCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHH
Q psy9852         157 DNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       157 ~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      +.||| +.++...+..........    ....|.|.  -+||||+|+..+.+     ..+.++.+...||+||
T Consensus       200 ~~ssRSH~i~~i~v~~~~~~~~~~----~~~~s~l~--~VDLaGse~~~~~~-----~~~~~~~e~~~in~sl  261 (328)
T cd00106         200 ERSSRSHAIFTIHVEQRNTTNDGR----SIKSSKLN--LVDLAGSERAKKTG-----AEGDRLKEAKNINKSL  261 (328)
T ss_pred             CCcCcCcEEEEEEEEEEecCCCCc----cEEEEEEE--EEECCCCCcccccC-----CchhhhHhHHhhhhhH
Confidence            99999 443333332221111100    01111222  26999999876642     3344444444455444

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil

>KOG0241|consensus

Probab=100.00  E-value=6.4e-42  Score=335.22  Aligned_cols=210  Identities=22%  Similarity=0.301  Sum_probs=176.9

Q ss_pred             CeecceecC-C-------CChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHH
Q psy9852           1 MFAFDAIFS-D-------EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR   72 (241)
Q Consensus         1 tF~FD~VF~-~-------a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~   72 (241)
                      +|.||++|+ .       +.|+.||+.....+|+.+|+|||+||||||||||||||||+|...   ++|||||.++.||+
T Consensus        54 tFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~---QpGiIPrlc~~lFe  130 (1714)
T KOG0241|consen   54 TFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAE---QPGIIPRLCESLFE  130 (1714)
T ss_pred             eeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCC---CCCchhHHHHHHHH
Confidence            699999998 3       689999999999999999999999999999999999999999987   69999999999999


Q ss_pred             HHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC--CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCC
Q psy9852          73 CISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS--NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDS  149 (241)
Q Consensus        73 ~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~--~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~  149 (241)
                      +|+.... ++..|+|.|||+|||  ||++||||.|..  +.++++++.-.|.||.||++..|.|++|+..+|. |++.|+
T Consensus       131 ~I~k~~n-~~~tfkVeVSymEIy--nEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrt  207 (1714)
T KOG0241|consen  131 RIDKESN-PSQTFKVEVSYMEIY--NEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRT  207 (1714)
T ss_pred             HHHhccC-CCceEEEEEEHHHHh--hcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccce
Confidence            9998764 578999999999999  999999998875  4468899999999999999999999999999999 999999


Q ss_pred             ccccCCCCCCch----hhhhc-eeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHH
Q psy9852         150 LISNKRNDNSSL----YSNSN-ERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLE  219 (241)
Q Consensus       150 ~~~T~~N~~SSr----f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~  219 (241)
                      +++|+||..|||    |+++. .++.|+.+-.|.+.-.      .|..  +||||+||..|++     |.+..-+|-+|+
T Consensus       208 vaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvs------klsl--VDLAgserasktga~g~rlkegsNinkSLt  279 (1714)
T KOG0241|consen  208 VAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVS------KLSL--VDLAGSERASKTGAAGSRLKEGSNINKSLT  279 (1714)
T ss_pred             eeeecccccccccceeEEEEEeeEEeccccCcchhhee------eeeE--EEeccccccccccchhhhhhhcCCcchhhH
Confidence            999999999998    76554 4466666533332211      2333  7999999999884     334444444455


Q ss_pred             HHHHh
Q psy9852         220 QLKRE  224 (241)
Q Consensus       220 ~~~~~  224 (241)
                      +|++.
T Consensus       280 tLglV  284 (1714)
T KOG0241|consen  280 TLGLV  284 (1714)
T ss_pred             HHHHH
Confidence            54443

>KOG0247|consensus

Probab=100.00  E-value=3.9e-40  Score=318.30  Aligned_cols=209  Identities=23%  Similarity=0.331  Sum_probs=177.8

Q ss_pred             eecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc-
Q psy9852           2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH-   79 (241)
Q Consensus         2 F~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~-   79 (241)
                      |.|-+||+ +++|.+||+.++.|+|..++.|.|..+|+||.|||||||||.|++.   .+||+||+++-||..|+.... 
T Consensus        83 fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~---~~GIlPR~Ld~iF~siq~~~~~  159 (809)
T KOG0247|consen   83 FSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPD---RPGILPRALDVIFNSIQGRQAK  159 (809)
T ss_pred             eeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCC---CCCchHHHHHHHHHHhhceecc
Confidence            89999999 9999999999999999999999999999999999999999999997   589999999999999976210 


Q ss_pred             -------------------------------------------------------------CCCcEEEEEEEEEEEeCCC
Q psy9852          80 -------------------------------------------------------------KTGARFSVRASAIEISSSS   98 (241)
Q Consensus        80 -------------------------------------------------------------~~~~~~~V~vS~lEIY~~n   98 (241)
                                                                                   ..+..|+|+|||+|||  |
T Consensus       160 k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIY--N  237 (809)
T KOG0247|consen  160 KPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIY--N  237 (809)
T ss_pred             CceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHH--H
Confidence                                                                         0234789999999999  9


Q ss_pred             CeEEEcCCCCCCC------ceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCCCch-hhhhceeee
Q psy9852          99 QHVKDLLSTYSNG------KFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDNSSL-YSNSNERLH  170 (241)
Q Consensus        99 E~v~DLL~~~~~~------~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~SSr-f~~~~~~~~  170 (241)
                      |-|||||.+....      ..+++|.++..||+|+++|.|.+.+|+++||. |.++|++++|.+|+.||| ++++.+++.
T Consensus       238 ~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~  317 (809)
T KOG0247|consen  238 NYIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLV  317 (809)
T ss_pred             HHHHHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEee
Confidence            9999999776322      35688999999999999999999999999999 999999999999999999 777777765


Q ss_pred             CCCCC---CccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         171 DPGGT---GSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       171 ~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      ...+.   +-+..-         +++=+|||||||.++++     -.|.||-|.+.||+||+
T Consensus       318 q~~~~~~s~~i~vS---------qlsLvDLAGSERt~rtq-----~sG~RLrEagNINtSLm  365 (809)
T KOG0247|consen  318 QAPRSQDSNQITVS---------QLSLVDLAGSERTNRTQ-----NSGERLREAGNINTSLM  365 (809)
T ss_pred             ecccccccCceeEE---------eeeeeecccchhccccc-----chhHHHHhhccccHHHH
Confidence            55443   111111         22336999999998874     46778888888888876

>KOG0246|consensus

Probab=100.00  E-value=1.8e-37  Score=293.25  Aligned_cols=218  Identities=21%  Similarity=0.226  Sum_probs=179.7

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC---CCCCCCchHHHHHHHHHHHHh
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ---SSATLGVIPSAISWLFRCISE   76 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~---~~~~~GIipr~~~~LF~~i~~   76 (241)
                      .|.||++|| .+++++||+-++.|+|+.+|+|--+|+||||||||||||||.|.-.   .....||+-++.+++|..+..
T Consensus       259 ~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~  338 (676)
T KOG0246|consen  259 KFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQ  338 (676)
T ss_pred             eEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcc
Confidence            499999999 9999999999999999999999999999999999999999987753   134689999999999999887


Q ss_pred             cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852          77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR  155 (241)
Q Consensus        77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~  155 (241)
                      ..-. ...+.|.+||||||  ..++||||++ ++.+.+.+|.+..++|-||++..|.+.++++++|+ |+..|+++.|..
T Consensus       339 p~Y~-~~~l~v~~tFFEIY--gGKvfDLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsA  414 (676)
T KOG0246|consen  339 PTYR-KLDLKVYVTFFEIY--GGKVYDLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSA  414 (676)
T ss_pred             cchh-hcceEEEEEEEEEe--Ccchhhhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccC
Confidence            5432 46789999999999  8999999977 55578899999999999999999999999999999 999999999999


Q ss_pred             CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHH--HHhhHHHHH--
Q psy9852         156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQL--KREKRALLI--  230 (241)
Q Consensus       156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--  230 (241)
                      |+.||| +.++++.+..-+.   .+-++-|.+        +||||+||-.-+.      .++|.+.+  -.||||||.  
T Consensus       415 Ns~SSRSHAvfQIilr~~~~---~k~hGKfSl--------IDLAGnERGaDts------~adRqtRlEGAEINKSLLALK  477 (676)
T KOG0246|consen  415 NSNSSRSHAVFQIILRKHGE---FKLHGKFSL--------IDLAGNERGADTS------SADRQTRLEGAEINKSLLALK  477 (676)
T ss_pred             cccccccceeEeeeeecCCc---ceeEeEEEE--------EEccCCccCCccc------ccchhhhhhhhhhhHHHHHHH
Confidence            999999 7766666643222   344444444        6999999865443      34455444  368999974  


Q ss_pred             ----Hhhhccccc
Q psy9852         231 ----ELAATKTHL  239 (241)
Q Consensus       231 ----~~~~~~~~~  239 (241)
                          -|...|.|+
T Consensus       478 ECIRaLg~nk~H~  490 (676)
T KOG0246|consen  478 ECIRALGRNKSHL  490 (676)
T ss_pred             HHHHHhcCCCCCC
Confidence                244455554

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=6.8e-37  Score=297.93  Aligned_cols=209  Identities=23%  Similarity=0.308  Sum_probs=174.7

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ .++|++||+..+.|++++++.||||||||||||||||||||.|...   ++||||+++.+||+.++....
T Consensus        57 ~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~---~~Gii~~~l~~lf~~l~~~~~  133 (568)
T COG5059          57 TYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEE---EPGIIPLSLKELFSKLEDLSM  133 (568)
T ss_pred             EEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCcc---ccchHHHHHHHHHHHHHhccc
Confidence            499999999 9999999999999999999999999999999999999999999995   689999999999999998865


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                        +..+.|.+||+|||  ||+++|||.+....+.++++...++++.+++++.+.+.+++..+|+ +..+|++++|.+|+.
T Consensus       134 --~~~~~v~is~lEiY--nEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~  209 (568)
T COG5059         134 --TKDFAVSISYLEIY--NEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDE  209 (568)
T ss_pred             --CcceeeEeehhHHH--hhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccc
Confidence              46899999999999  9999999999988788899999999999999999999999999999 999999999999999


Q ss_pred             Cch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         159 SSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       159 SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      ||| ++++...+..-......  .++    +-+  .-+||||+|+...     .++++.|+.+..-|||+|+
T Consensus       210 ssRshsi~~i~~~~~~~~~~~--~~~----~~l--~lvDLagSE~~~~-----~~~~~~r~~E~~~iN~sLl  268 (568)
T COG5059         210 SSRSHSIFQIELASKNKVSGT--SET----SKL--SLVDLAGSERAAR-----TGNRGTRLKEGASINKSLL  268 (568)
T ss_pred             cccceEEEEEEEEEeccCccc--eec----ceE--EEEeeccccccch-----hhcccchhhhhhhhHhhHH
Confidence            999 55554444322111111  010    112  2369999975544     3556666666666666664

>KOG0244|consensus

Probab=99.98  E-value=1.4e-33  Score=278.97  Aligned_cols=209  Identities=24%  Similarity=0.288  Sum_probs=175.1

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCC-CCchHHHHHHHHHHHHhcc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT-LGVIPSAISWLFRCISEQK   78 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~-~GIipr~~~~LF~~i~~~~   78 (241)
                      +|+||+||+ ...|.++|+..|.|+++.+++|||+|++|||||||||||||.+....... .|+|||+++++|..+....
T Consensus        33 s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~  112 (913)
T KOG0244|consen   33 SFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTE  112 (913)
T ss_pred             ceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhh
Confidence            599999999 99999999999999999999999999999999999999999877443233 5999999999999999876


Q ss_pred             cCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCC--ceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852          79 HKTGARFSVRASAIEISSSSQHVKDLLSTYSNG--KFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR  155 (241)
Q Consensus        79 ~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~--~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~  155 (241)
                      .   ..|.|.|||+|||  +|.|+|||.|...-  ..+++ +.+++.+.+++++.|.+..+..+.|. |...|++++|+|
T Consensus       113 ~---~~f~i~vs~vely--~e~v~dl~~~~~~~~~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnM  186 (913)
T KOG0244|consen  113 S---FVFRITVSFVELY--NEEVLDLLKPSRLKANIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNM  186 (913)
T ss_pred             c---cceeeeeeeeecc--chhhhhhcChhhhhhceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence            5   4899999999999  99999999865433  45555 67789999999999999999999999 999999999999


Q ss_pred             CCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHHH
Q psy9852         156 NDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALLI  230 (241)
Q Consensus       156 N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (241)
                      |++|||    |++..++..-.....+   |.     |-+  -.+|||||||+-+++     ..+.|+.+==.||+.||.
T Consensus       187 N~qssRshAifti~lkq~kk~~~~s~---~~-----sKl--hlVDLAGSER~kkT~-----a~gdrlKEgInIN~gLL~  250 (913)
T KOG0244|consen  187 NAQSSRSHAIFTITLKQRKKLSKRSS---FC-----SKL--HLVDLAGSERVKKTK-----AEGDRLKEGININGGLLA  250 (913)
T ss_pred             chhhhhhhHHHHHHHHHHHHhhccch---hh-----hhh--heeeccccccccccc-----cchhhhhhccCcchHHHH
Confidence            999999    8888888543322111   11     112  237999999888774     567788777778887764

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=99.89  E-value=4.3e-23  Score=174.72  Aligned_cols=130  Identities=19%  Similarity=0.248  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhcccCCCcEEEEEEEEEEEe
Q psy9852          16 ICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEIS   95 (241)
Q Consensus        16 Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~~~~~~~~V~vS~lEIY   95 (241)
                      ||+.+. |+|+.+++|+|+|||||||+||||||||+|++.   ++||+|+++++                          
T Consensus         8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~---~~Giip~~~~~--------------------------   57 (186)
T cd01363           8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKRE---GAGIIPRTVTD--------------------------   57 (186)
T ss_pred             HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCC---CCCcchHHHHH--------------------------
Confidence            899888 999999999999999999999999999999985   58999999887                          


Q ss_pred             CCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCCCch-hhhhceeee--C
Q psy9852          96 SSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDNSSL-YSNSNERLH--D  171 (241)
Q Consensus        96 ~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~SSr-f~~~~~~~~--~  171 (241)
                                                                +.++++ +..+|++++|.+|+.||| +..+...+.  +
T Consensus        58 ------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~   95 (186)
T cd01363          58 ------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKN   95 (186)
T ss_pred             ------------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEee
Confidence                                                      788999 999999999999999999 333333322  1


Q ss_pred             CCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         172 PGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      ....+... .    .-|.|.  -+||||+|+..+++     ..+.|+.|.+.||+||.
T Consensus        96 ~~~~~~~~-~----~~s~l~--lVDLAGsE~~~~~~-----~~~~~~~e~~~in~sl~  141 (186)
T cd01363          96 ALASATEQ-P----KVGKIN--LVDLAGSERIDFSG-----AEGSRLTETANINKSLS  141 (186)
T ss_pred             cCCCCccc-e----eeeeEE--EEEccccccccccC-----CchhhHHHHHHHhhHHH
Confidence            11101000 0    011122  26999998776654     33456666666666663

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=94.90  E-value=0.021  Score=49.52  Aligned_cols=49  Identities=20%  Similarity=0.320  Sum_probs=31.5

Q ss_pred             CeecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852           1 MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus         1 tF~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      .|+||.......++..|. .+..+.+.--..+|. ++-||++|+||||-|.
T Consensus         4 ~~tFdnfv~g~~N~~a~~-~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~   52 (219)
T PF00308_consen    4 KYTFDNFVVGESNELAYA-AAKAIAENPGERYNP-LFLYGPSGLGKTHLLQ   52 (219)
T ss_dssp             T-SCCCS--TTTTHHHHH-HHHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred             CCccccCCcCCcHHHHHH-HHHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence            378888776555667775 455555542223454 7889999999999773

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK06620 hypothetical protein; Validated

Probab=92.99  E-value=0.066  Score=46.38  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=31.8

Q ss_pred             eecceecCCCChHHHHHHHHHHHHHHHhcCCC---EEEEcccccCCCcceeecc
Q psy9852           2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSD---GCLFCFGHARLGKSYTMVG   52 (241)
Q Consensus         2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n---~ti~aYGqtgSGKTyTm~G   52 (241)
                      |+||.......++..|.. +..+.+. . |+|   -.++-||++||||||-+..
T Consensus        13 ~tfd~Fvvg~~N~~a~~~-~~~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~a   63 (214)
T PRK06620         13 YHPDEFIVSSSNDQAYNI-IKNWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTKI   63 (214)
T ss_pred             CCchhhEecccHHHHHHH-HHHHHHc-c-ccCCCcceEEEECCCCCCHHHHHHH
Confidence            667776664445667764 4444331 1 343   3589999999999999964

>PRK06893 DNA replication initiation factor; Validated

Probab=92.98  E-value=0.086  Score=45.85  Aligned_cols=44  Identities=14%  Similarity=0.230  Sum_probs=28.6

Q ss_pred             eecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852           2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus         2 F~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      ++||..+. . +..-+     ..+....-..++..++-||++|+||||-+.
T Consensus        13 ~~fd~f~~~~-~~~~~-----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~   57 (229)
T PRK06893         13 ETLDNFYADN-NLLLL-----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLK   57 (229)
T ss_pred             ccccccccCC-hHHHH-----HHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence            46777776 4 22222     222233334677788999999999999984

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=91.94  E-value=0.068  Score=49.22  Aligned_cols=30  Identities=23%  Similarity=0.437  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852          21 LSDVIQAVISGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      +.|++..+++--++.|+.-|+||||||.||
T Consensus       113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl  142 (353)
T COG2805         113 LPPIVRELAESPRGLILVTGPTGSGKSTTL  142 (353)
T ss_pred             CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence            568888899999999999999999999999

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=91.19  E-value=0.57  Score=46.22  Aligned_cols=88  Identities=15%  Similarity=0.201  Sum_probs=53.0

Q ss_pred             eecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCch----HHHHHHHHHHHHh
Q psy9852           2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVI----PSAISWLFRCISE   76 (241)
Q Consensus         2 F~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIi----pr~~~~LF~~i~~   76 (241)
                      |....-|. .-+|    -..+..||+.+-.|...-+ ..|.|||||||||.--=.....|-+|    --.+.+||...+.
T Consensus         5 F~l~s~f~PaGDQ----P~AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~   79 (663)
T COG0556           5 FKLHSPFKPAGDQ----PEAIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKE   79 (663)
T ss_pred             eEeccCCCCCCCc----HHHHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHHH
Confidence            33444455 4555    3467888888877776544 45999999999995211000111221    1134577877776


Q ss_pred             cccCCCcEEEEEEEEEEEeC
Q psy9852          77 QKHKTGARFSVRASAIEISS   96 (241)
Q Consensus        77 ~~~~~~~~~~V~vS~lEIY~   96 (241)
                      .=..  ..+.-.|||+.-|+
T Consensus        80 fFP~--NaVEYFVSYYDYYQ   97 (663)
T COG0556          80 FFPE--NAVEYFVSYYDYYQ   97 (663)
T ss_pred             hCcC--cceEEEeeeccccC
Confidence            5432  35566899999993

>PRK09087 hypothetical protein; Validated

Probab=91.15  E-value=0.16  Score=44.39  Aligned_cols=45  Identities=11%  Similarity=0.110  Sum_probs=28.4

Q ss_pred             eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852           2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus         2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      |+||..+....+..+|..     +.....-.+..++-||++||||||-+.
T Consensus        18 ~~~~~Fi~~~~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~   62 (226)
T PRK09087         18 YGRDDLLVTESNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS   62 (226)
T ss_pred             CChhceeecCchHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence            567766662334447762     222222224458999999999999995

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=91.04  E-value=0.52  Score=47.90  Aligned_cols=37  Identities=22%  Similarity=0.144  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHhcCCCccccCCCCCCchhhhhceeeeCCCC
Q psy9852         135 PPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGG  174 (241)
Q Consensus       135 ~~d~~~ll~g~~~R~~~~T~~N~~SSrf~~~~~~~~~~~~  174 (241)
                      +-++.-+|++--+   +.|.+|++||||.-..+.-.++.+
T Consensus       139 il~snpiLEAFGN---AkT~rN~NSSRFGK~i~l~f~~~g  175 (693)
T cd01377         139 ILQANPILEAFGN---AKTVRNDNSSRFGKFIRIHFGNTG  175 (693)
T ss_pred             HHHHHHHHHHhhc---cccCCCCCccccceeEEEEECCCC
Confidence            4455667773334   679999999999877776666543

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=90.83  E-value=0.15  Score=51.03  Aligned_cols=49  Identities=22%  Similarity=0.351  Sum_probs=33.1

Q ss_pred             eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852           2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG   52 (241)
Q Consensus         2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G   52 (241)
                      |+||..+-...++..|. .+..+++..-..+|. ++-||.+|+||||-+..
T Consensus       285 ~TFDnFvvG~sN~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A  333 (617)
T PRK14086        285 YTFDTFVIGASNRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA  333 (617)
T ss_pred             CCHhhhcCCCccHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence            67777665333445664 445555543345675 89999999999999864

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=90.33  E-value=1.4  Score=44.76  Aligned_cols=21  Identities=19%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             cCCCEEEEcccccCCCcceee
Q psy9852          30 SGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        30 ~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      .+.|.||+.-|.+|||||.+.
T Consensus        83 ~~~~QsIiisGESGaGKTe~~  103 (674)
T cd01378          83 ENENQCVIISGESGAGKTEAA  103 (674)
T ss_pred             cCCCceEEEEcCCCCCcchHH
Confidence            489999999999999999988

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=90.18  E-value=0.18  Score=48.41  Aligned_cols=48  Identities=19%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852           2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG   52 (241)
Q Consensus         2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G   52 (241)
                      |+||...-...+...|.. +..+.+. -..+|. ++-||++|+||||-+..
T Consensus       102 ~tFdnFv~g~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a  149 (440)
T PRK14088        102 YTFENFVVGPGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS  149 (440)
T ss_pred             CcccccccCCchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence            667776653445566664 3333332 112564 99999999999999873

>PRK12377 putative replication protein; Provisional

Probab=90.02  E-value=0.3  Score=43.48  Aligned_cols=48  Identities=13%  Similarity=0.198  Sum_probs=33.2

Q ss_pred             ecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852           3 AFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG   52 (241)
Q Consensus         3 ~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G   52 (241)
                      +||.... ...|..++. .+..+++.+..+. ..++-+|++|+||||.+..
T Consensus        72 tFdnf~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A  120 (248)
T PRK12377         72 SFANYQVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA  120 (248)
T ss_pred             CcCCcccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence            4554444 456666775 4666777666554 4688899999999999864

>PRK05642 DNA replication initiation factor; Validated

Probab=89.94  E-value=0.25  Score=43.19  Aligned_cols=18  Identities=17%  Similarity=0.480  Sum_probs=15.7

Q ss_pred             EEEEcccccCCCcceeec
Q psy9852          34 GCLFCFGHARLGKSYTMV   51 (241)
Q Consensus        34 ~ti~aYGqtgSGKTyTm~   51 (241)
                      ..++-||++|+||||-+.
T Consensus        46 ~~l~l~G~~G~GKTHLl~   63 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQ   63 (234)
T ss_pred             CeEEEECCCCCCHHHHHH
Confidence            457899999999999884

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=89.81  E-value=0.28  Score=44.95  Aligned_cols=47  Identities=13%  Similarity=0.203  Sum_probs=28.8

Q ss_pred             cceecC-CCChHHHHHHHHHHHHHHHhc-CCCEEEEcccccCCCcceeec
Q psy9852           4 FDAIFS-DEPQSEICTSALSDVIQAVIS-GSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus         4 FD~VF~-~a~Qe~Vy~~~v~plV~~vl~-G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      -|++-+ -...++-.+.+ ...+...+. +...+++.||++|+|||+++.
T Consensus        10 ~~~~p~~l~gRe~e~~~l-~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~   58 (365)
T TIGR02928        10 PDYVPDRIVHRDEQIEEL-AKALRPILRGSRPSNVFIYGKTGTGKTAVTK   58 (365)
T ss_pred             CCCCCCCCCCcHHHHHHH-HHHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence            344444 34445555433 333444444 445678999999999999883

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=89.44  E-value=0.91  Score=46.06  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=19.7

Q ss_pred             cCCCEEEEcccccCCCcceee
Q psy9852          30 SGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        30 ~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      .|.|.||+.-|.+|||||.+.
T Consensus        85 ~~~~QsIiisGESGaGKTe~~  105 (674)
T cd01384          85 EGKSQSILVSGESGAGKTETT  105 (674)
T ss_pred             cCCCceEEEECCCCCCchhHH
Confidence            489999999999999999988

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>PRK08116 hypothetical protein; Validated

Probab=89.31  E-value=0.29  Score=43.85  Aligned_cols=48  Identities=15%  Similarity=0.275  Sum_probs=31.1

Q ss_pred             ecceecCCCChHHHHHHHHHHHHHHHhc--CCCEEEEcccccCCCcceeec
Q psy9852           3 AFDAIFSDEPQSEICTSALSDVIQAVIS--GSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus         3 ~FD~VF~~a~Qe~Vy~~~v~plV~~vl~--G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      +||.......++..|. .+...++.+.+  ..+..++-||++|+||||-+.
T Consensus        83 tFdnf~~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~  132 (268)
T PRK08116         83 TFENFLFDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA  132 (268)
T ss_pred             chhcccCChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence            4554322444555665 45666666543  334568999999999999985

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=89.24  E-value=0.24  Score=47.46  Aligned_cols=49  Identities=20%  Similarity=0.286  Sum_probs=29.9

Q ss_pred             eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852           2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG   52 (241)
Q Consensus         2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G   52 (241)
                      |+||.......+...|. .+..+.+.--..+| .++-||++|+||||.+..
T Consensus       119 ~tfd~fv~g~~n~~a~~-~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a  167 (450)
T PRK00149        119 YTFDNFVVGKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA  167 (450)
T ss_pred             CcccccccCCCcHHHHH-HHHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence            56666444334555665 34444443212344 478899999999999853

>cd00124 MYSc Myosin motor domain

Probab=89.21  E-value=0.82  Score=46.31  Aligned_cols=21  Identities=14%  Similarity=0.238  Sum_probs=19.7

Q ss_pred             cCCCEEEEcccccCCCcceee
Q psy9852          30 SGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        30 ~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      .+.|.||+.-|.+|||||.+.
T Consensus        83 ~~~~QsIiisGESGaGKTe~~  103 (679)
T cd00124          83 DRRNQSIIISGESGAGKTENT  103 (679)
T ss_pred             cCCCceEEEecCCCCCchHHH
Confidence            489999999999999999987

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>PRK08084 DNA replication initiation factor; Provisional

Probab=89.15  E-value=0.36  Score=42.16  Aligned_cols=45  Identities=13%  Similarity=0.374  Sum_probs=27.3

Q ss_pred             eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852           2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus         2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      |+||..+.. .+...+. .+..+..   ......++-||++|+||||.+.
T Consensus        19 ~~fd~f~~~-~n~~a~~-~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~   63 (235)
T PRK08084         19 ETFASFYPG-DNDSLLA-ALQNALR---QEHSGYIYLWSREGAGRSHLLH   63 (235)
T ss_pred             CCccccccC-ccHHHHH-HHHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence            445543334 4555664 3343332   2222478999999999999984

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins

Probab=89.05  E-value=0.73  Score=47.04  Aligned_cols=21  Identities=14%  Similarity=0.167  Sum_probs=19.8

Q ss_pred             cCCCEEEEcccccCCCcceee
Q psy9852          30 SGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        30 ~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      .+.|.||+.-|.+|||||.+.
T Consensus        88 ~~~~QsIiisGESGaGKTes~  108 (717)
T cd01382          88 LKMSQSIIVSGESGAGKTENT  108 (717)
T ss_pred             cCCCCeEEEecCCCCChhHHH
Confidence            589999999999999999988

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=89.05  E-value=0.36  Score=44.73  Aligned_cols=40  Identities=13%  Similarity=0.169  Sum_probs=25.2

Q ss_pred             CChHHHHHHHHHHHHHHHhc-CCCEEEEcccccCCCcceeec
Q psy9852          11 EPQSEICTSALSDVIQAVIS-GSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus        11 a~Qe~Vy~~~v~plV~~vl~-G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      ...++-.+.. ...+...+. +....++-||+.|+|||+++.
T Consensus        33 ~~Re~e~~~l-~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~   73 (394)
T PRK00411         33 PHREEQIEEL-AFALRPALRGSRPLNVLIYGPPGTGKTTTVK   73 (394)
T ss_pred             CCHHHHHHHH-HHHHHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence            3344444433 333334443 444668999999999999874

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=88.98  E-value=0.29  Score=37.13  Aligned_cols=28  Identities=18%  Similarity=0.191  Sum_probs=19.4

Q ss_pred             HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852          23 DVIQAVISGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        23 plV~~vl~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      .+...+.......++.+|++|+|||+.+
T Consensus         9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~   36 (151)
T cd00009           9 ALREALELPPPKNLLLYGPPGTGKTTLA   36 (151)
T ss_pred             HHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence            3333333334456889999999999876

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=88.95  E-value=0.19  Score=48.99  Aligned_cols=31  Identities=16%  Similarity=0.267  Sum_probs=25.7

Q ss_pred             HHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852          21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus        21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      -...+..++..-++-|+.-|+||||||.||+
T Consensus       246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY  276 (500)
T COG2804         246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLY  276 (500)
T ss_pred             HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence            3445567778888999999999999999994

>cd01380 MYSc_type_V Myosin motor domain, type V myosins

Probab=88.67  E-value=1.1  Score=45.55  Aligned_cols=37  Identities=24%  Similarity=0.270  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHhcCCCccccCCCCCCchhhhhceeeeCCCC
Q psy9852         135 PPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGG  174 (241)
Q Consensus       135 ~~d~~~ll~g~~~R~~~~T~~N~~SSrf~~~~~~~~~~~~  174 (241)
                      +-++.-+|++--+   +.|.+|++||||.-..+.-.+..+
T Consensus       130 il~snpiLEAFGN---AkT~~N~NSSRFGK~~~l~f~~~g  166 (691)
T cd01380         130 VLASNPIMEAFGN---AKTTRNDNSSRFGKYIQILFDKRG  166 (691)
T ss_pred             HHHHHHHHHHhhc---CCCCCCCCccccceEEEEEECCCC
Confidence            3456677773333   679999999999877666655543

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=88.65  E-value=0.31  Score=45.88  Aligned_cols=48  Identities=21%  Similarity=0.288  Sum_probs=28.3

Q ss_pred             eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852           2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus         2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      |+||...-...+...|. .+..+.+.--..+| .++-||++|+||||.+.
T Consensus       107 ~tfd~fi~g~~n~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~  154 (405)
T TIGR00362       107 YTFDNFVVGKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH  154 (405)
T ss_pred             CcccccccCCcHHHHHH-HHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence            55655333334555664 34444443111234 47889999999999985

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins

Probab=88.53  E-value=0.69  Score=47.60  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             cCCCEEEEcccccCCCcceee
Q psy9852          30 SGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        30 ~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      .|.|.||+.-|.+|||||.+.
T Consensus        83 ~~~~QsIiiSGESGAGKTe~t  103 (767)
T cd01386          83 TRRDQSIIFLGRSGAGKTTSC  103 (767)
T ss_pred             cCCCceEEEecCCCCCcHHHH
Confidence            589999999999999999987

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the

>PRK07952 DNA replication protein DnaC; Validated

Probab=86.71  E-value=0.67  Score=41.12  Aligned_cols=48  Identities=13%  Similarity=0.115  Sum_probs=30.6

Q ss_pred             ecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852           3 AFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG   52 (241)
Q Consensus         3 ~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G   52 (241)
                      +||...- ...|..++. .+...++....+. ..++-+|.+|+||||.+..
T Consensus        70 tFdnf~~~~~~q~~al~-~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a  118 (244)
T PRK07952         70 SFENYRVECEGQMNALS-KARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA  118 (244)
T ss_pred             ccccccCCCchHHHHHH-HHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence            3554433 445656665 3455555554443 3688999999999999853

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=86.53  E-value=0.44  Score=38.30  Aligned_cols=30  Identities=10%  Similarity=0.168  Sum_probs=20.3

Q ss_pred             HHHHHHhcC-CCEEEEcccccCCCcceeecc
Q psy9852          23 DVIQAVISG-SDGCLFCFGHARLGKSYTMVG   52 (241)
Q Consensus        23 plV~~vl~G-~n~ti~aYGqtgSGKTyTm~G   52 (241)
                      .+++.+-.. ....++..++||||||++|..
T Consensus        14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~   44 (184)
T PF04851_consen   14 RIINSLENKKEERRVLLNAPTGSGKTIIALA   44 (184)
T ss_dssp             HHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred             HHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence            333333333 355667778999999999974

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>PRK06526 transposase; Provisional

Probab=85.98  E-value=0.36  Score=42.99  Aligned_cols=42  Identities=14%  Similarity=0.200  Sum_probs=25.2

Q ss_pred             EEEcccccCCCcceeeccCCCCCCCCC--chHHHHHHHHHHHHh
Q psy9852          35 CLFCFGHARLGKSYTMVGSPQSSATLG--VIPSAISWLFRCISE   76 (241)
Q Consensus        35 ti~aYGqtgSGKTyTm~G~~~~~~~~G--Iipr~~~~LF~~i~~   76 (241)
                      .++.+|++|+||||.+.+-.......|  ++...+.++++.+..
T Consensus       100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~  143 (254)
T PRK06526        100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAA  143 (254)
T ss_pred             eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHH
Confidence            478999999999999874321100112  233445566666553

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=85.84  E-value=0.59  Score=43.90  Aligned_cols=27  Identities=19%  Similarity=0.418  Sum_probs=19.9

Q ss_pred             HHHHhcCCC-EEEEcccccCCCcceeec
Q psy9852          25 IQAVISGSD-GCLFCFGHARLGKSYTMV   51 (241)
Q Consensus        25 V~~vl~G~n-~ti~aYGqtgSGKTyTm~   51 (241)
                      +..++.|.- ..++.||.+|+|||.++.
T Consensus        33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~   60 (366)
T COG1474          33 LAPALRGERPSNIIIYGPTGTGKTATVK   60 (366)
T ss_pred             HHHHhcCCCCccEEEECCCCCCHhHHHH
Confidence            444455444 449999999999999874

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=85.73  E-value=0.49  Score=45.58  Aligned_cols=49  Identities=16%  Similarity=0.262  Sum_probs=31.1

Q ss_pred             eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852           2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG   52 (241)
Q Consensus         2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G   52 (241)
                      |+||......+++..|. .+..+.+.--..+| .++-||++|+||||.|..
T Consensus       112 ~tFdnFv~g~~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A  160 (450)
T PRK14087        112 NTFENFVIGSSNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA  160 (450)
T ss_pred             cchhcccCCCcHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence            57777665334556664 44544432111234 488999999999999964

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=85.54  E-value=0.48  Score=45.24  Aligned_cols=67  Identities=16%  Similarity=0.213  Sum_probs=38.1

Q ss_pred             eecceecCCCChHHHHHHHHHHHHHHHhcC-CCEEEEcccccCCCcceeeccCCC----CCCCCCchHHHHHHHH
Q psy9852           2 FAFDAIFSDEPQSEICTSALSDVIQAVISG-SDGCLFCFGHARLGKSYTMVGSPQ----SSATLGVIPSAISWLF   71 (241)
Q Consensus         2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G-~n~ti~aYGqtgSGKTyTm~G~~~----~~~~~GIipr~~~~LF   71 (241)
                      |+||......++...|. .+.. +...-.+ || -+|-||.+|+||||-|.--..    ......+++.+.++.+
T Consensus        84 ytFdnFv~g~~N~~A~a-a~~~-va~~~g~~~n-plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~  155 (408)
T COG0593          84 YTFDNFVVGPSNRLAYA-AAKA-VAENPGGAYN-PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT  155 (408)
T ss_pred             CchhheeeCCchHHHHH-HHHH-HHhccCCcCC-cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH
Confidence            66777666455555554 2222 2222222 45 588999999999999973221    1223455665555544

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=83.81  E-value=1  Score=38.61  Aligned_cols=45  Identities=22%  Similarity=0.415  Sum_probs=27.0

Q ss_pred             eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852           2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus         2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      ++||.+..... +.+.. .+..++..  ......++-||++|+||||-+
T Consensus        15 ~~~d~f~~~~~-~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La   59 (227)
T PRK08903         15 PTFDNFVAGEN-AELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLL   59 (227)
T ss_pred             hhhcccccCCc-HHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence            45666654122 22333 34444432  233457899999999999988

>PRK08181 transposase; Validated

Probab=82.48  E-value=1.3  Score=39.82  Aligned_cols=45  Identities=22%  Similarity=0.223  Sum_probs=27.5

Q ss_pred             cCCCEEEEcccccCCCcceeeccCCCCCCCCC--chHHHHHHHHHHHHh
Q psy9852          30 SGSDGCLFCFGHARLGKSYTMVGSPQSSATLG--VIPSAISWLFRCISE   76 (241)
Q Consensus        30 ~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~G--Iipr~~~~LF~~i~~   76 (241)
                      .+.|  ++-||++|+||||-+.+-...-...|  ++...+.+|++.+..
T Consensus       105 ~~~n--lll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~  151 (269)
T PRK08181        105 KGAN--LLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQV  151 (269)
T ss_pred             cCce--EEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHH
Confidence            4544  88999999999999875431100123  344445666666644

>PF13245 AAA_19: Part of AAA domain

Probab=82.47  E-value=0.55  Score=34.05  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=16.7

Q ss_pred             HHHHhcCCCEEEEcccccCCCcceee
Q psy9852          25 IQAVISGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        25 V~~vl~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      |...+.+ +..++.-|+.|||||+|+
T Consensus         3 v~~al~~-~~~~vv~g~pGtGKT~~~   27 (76)
T PF13245_consen    3 VRRALAG-SPLFVVQGPPGTGKTTTL   27 (76)
T ss_pred             HHHHHhh-CCeEEEECCCCCCHHHHH
Confidence            3334442 333455899999999988

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=82.44  E-value=0.41  Score=35.84  Aligned_cols=18  Identities=11%  Similarity=0.111  Sum_probs=15.1

Q ss_pred             EEcccccCCCcceeeccC
Q psy9852          36 LFCFGHARLGKSYTMVGS   53 (241)
Q Consensus        36 i~aYGqtgSGKTyTm~G~   53 (241)
                      ++.+|++|+|||+++...
T Consensus         3 ~~i~~~~G~GKT~~~~~~   20 (144)
T cd00046           3 VLLAAPTGSGKTLAALLP   20 (144)
T ss_pred             EEEECCCCCchhHHHHHH
Confidence            567899999999998653

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>PRK06835 DNA replication protein DnaC; Validated

Probab=82.34  E-value=1.1  Score=41.45  Aligned_cols=36  Identities=17%  Similarity=0.284  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852          15 EICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG   52 (241)
Q Consensus        15 ~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G   52 (241)
                      .+++ .+...++.+-... -.++-||++|+||||-+..
T Consensus       167 ~~~~-~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a  202 (329)
T PRK06835        167 KILE-KCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC  202 (329)
T ss_pred             HHHH-HHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence            4444 3455677665544 5699999999999998854

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=82.29  E-value=0.38  Score=36.99  Aligned_cols=18  Identities=22%  Similarity=0.230  Sum_probs=13.1

Q ss_pred             CEEEEcccccCCCcceee
Q psy9852          33 DGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        33 n~ti~aYGqtgSGKTyTm   50 (241)
                      ..+++.+|++|+|||..+
T Consensus         4 ~~~~~i~G~~G~GKT~~~   21 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLI   21 (131)
T ss_dssp             ---EEEEE-TTSSHHHHH
T ss_pred             CcccEEEcCCCCCHHHHH
Confidence            346889999999999988

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=81.80  E-value=1.3  Score=37.61  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=18.3

Q ss_pred             cCCCEEEEcccccCCCcceee
Q psy9852          30 SGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        30 ~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      ......|+-||++|+||||.+
T Consensus        35 ~~~~~~lll~G~~G~GKT~la   55 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLL   55 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHH
Confidence            456678999999999999988

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=81.66  E-value=1.1  Score=40.91  Aligned_cols=41  Identities=22%  Similarity=0.357  Sum_probs=27.6

Q ss_pred             ChHHHHHHHHHHHHHHHhcC-CCEEEEcccccCCCcceeeccC
Q psy9852          12 PQSEICTSALSDVIQAVISG-SDGCLFCFGHARLGKSYTMVGS   53 (241)
Q Consensus        12 ~Qe~Vy~~~v~plV~~vl~G-~n~ti~aYGqtgSGKTyTm~G~   53 (241)
                      .+..++.. +...++....| ..-.++-||++|+||||-+.+-
T Consensus       135 ~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Ai  176 (306)
T PRK08939        135 DRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAI  176 (306)
T ss_pred             HHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHH
Confidence            45556653 35556554433 2346999999999999999643

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=81.36  E-value=0.49  Score=35.29  Aligned_cols=18  Identities=17%  Similarity=0.207  Sum_probs=15.3

Q ss_pred             EEEEcccccCCCcceeec
Q psy9852          34 GCLFCFGHARLGKSYTMV   51 (241)
Q Consensus        34 ~ti~aYGqtgSGKTyTm~   51 (241)
                      ..++-+|++|||||..+.
T Consensus         3 ~~~~l~G~~G~GKTtl~~   20 (148)
T smart00382        3 EVILIVGPPGSGKTTLAR   20 (148)
T ss_pred             CEEEEECCCCCcHHHHHH
Confidence            357889999999999984

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=81.20  E-value=1.1  Score=43.14  Aligned_cols=48  Identities=17%  Similarity=0.245  Sum_probs=30.3

Q ss_pred             eecceecCCCChHHHHHHHHHHHHHHH--hcC--CCEEEEcccccCCCcceeec
Q psy9852           2 FAFDAIFSDEPQSEICTSALSDVIQAV--ISG--SDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus         2 F~FD~VF~~a~Qe~Vy~~~v~plV~~v--l~G--~n~ti~aYGqtgSGKTyTm~   51 (241)
                      |+||...-...++..|. .+..+.+..  ..|  || -++-||++|+||||-+.
T Consensus       108 ~tFdnFv~g~~N~~a~~-~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~  159 (445)
T PRK12422        108 MTFANFLVTPENDLPHR-ILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ  159 (445)
T ss_pred             ccccceeeCCcHHHHHH-HHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence            67777665345555564 344444322  223  44 37789999999999985

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=80.75  E-value=1.5  Score=39.00  Aligned_cols=40  Identities=15%  Similarity=0.280  Sum_probs=27.9

Q ss_pred             CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852          10 DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG   52 (241)
Q Consensus        10 ~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G   52 (241)
                      ...+..++. .+..+++.+-++.|  ++-||+.|+||||-...
T Consensus        85 ~~~~~~~l~-~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A  124 (254)
T COG1484          85 PGIDKKALE-DLASLVEFFERGEN--LVLLGPPGVGKTHLAIA  124 (254)
T ss_pred             cchhHHHHH-HHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence            445667776 35666666554444  67899999999998853

>PRK10436 hypothetical protein; Provisional

Probab=80.35  E-value=0.75  Score=44.60  Aligned_cols=27  Identities=19%  Similarity=0.381  Sum_probs=22.0

Q ss_pred             HHHHhcCCCEEEEcccccCCCcceeec
Q psy9852          25 IQAVISGSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus        25 V~~vl~G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      +..++..-.+.|+.-|+||||||.||+
T Consensus       210 l~~~~~~~~GliLvtGpTGSGKTTtL~  236 (462)
T PRK10436        210 FRQALQQPQGLILVTGPTGSGKTVTLY  236 (462)
T ss_pred             HHHHHHhcCCeEEEECCCCCChHHHHH
Confidence            445556667889999999999999994

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=80.29  E-value=1.2  Score=37.35  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=16.2

Q ss_pred             CCEEEEcccccCCCcceeecc
Q psy9852          32 SDGCLFCFGHARLGKSYTMVG   52 (241)
Q Consensus        32 ~n~ti~aYGqtgSGKTyTm~G   52 (241)
                      ..-.++-+|++|+||||...+
T Consensus        46 ~~~~l~l~G~~G~GKThLa~a   66 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVA   66 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHH
Confidence            345689999999999998853

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
3nwn_A	359	Crystal Structure Of The Human Kif9 Motor Domain In		8e-12
3b6v_A	395	Crystal Structure Of The Motor Domain Of Human Kine		2e-10
4h1g_A	715	Structure Of Candida Albicans Kar3 Motor Domain Fus		4e-10
3b6u_A	372	Crystal Structure Of The Motor Domain Of Human Kine		7e-10
1cz7_A	406	The Crystal Structure Of A Minus-End Directed Micro		3e-09
3l1c_A	383	Kinesin-14 Protein Ncd, T436s Mutant Length = 383		3e-09
2ncd_A	420	Ncd (Non-Claret Disjunctional) Dimer From D. Melano		3e-09
3u06_A	412	Crystal Structure Of The Kinesin-14 Ncdg347d Length		3e-09
1n6m_A	409	Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY		3e-09
2rep_A	376	Crystal Structure Of The Motor Domain Of Human Kine		1e-08
1f9t_A	358	Crystal Structures Of Kinesin Mutants Reveal A Sign		2e-08
3kar_A	346	The Motor Domain Of Kinesin-Like Protein Kar3, A Sa		3e-08
1f9v_A	347	Crystal Structures Of Mutants Reveal A Signalling P		3e-08
1f9u_A	347	Crystal Structures Of Mutants Reveal A Signalling P		3e-08
1f9w_A	347	Crystal Structures Of Mutants Reveal A Signalling P		3e-08
1t5c_A	349	Crystal Structure Of The Motor Domain Of Human Kine		5e-08
4etp_A	403	C-Terminal Motor And Motor Homology Domain Of Kar3v		5e-08
1goj_A	355	Structure Of A Fast Kinesin: Implications For Atpas		5e-07
2wbe_C	373	Kinesin-5-Tubulin Complex With Amppnp Length = 373		7e-07
2y5w_A	365	Crystal Structure Of Drosophila Melanogaster Kinesi		7e-07
1bg2_A	325	Human Ubiquitous Kinesin Motor Domain Length = 325		1e-06
1mkj_A	349	Human Kinesin Motor Domain With Docked Neck Linker		1e-06
4atx_C	340	Rigor Kinesin Motor Domain With An Ordered Neck-Lin		1e-06
4aqv_C	373	Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma		1e-06
4gkr_A	371	Structure Of The C-Terminal Motor Domain Of Kar3 Fr		2e-06
2owm_A	443	Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3		3e-06
3t0q_A	349	Motor Domain Structure Of The Kar3-Like Kinesin Fro		3e-06
1x88_A	359	Human Eg5 Motor Domain Bound To Mg-Adp And Monastro		5e-06
3hqd_A	369	Human Kinesin Eg5 Motor Domain In Complex With Ampp		6e-06
1ii6_A	368	Crystal Structure Of The Mitotic Kinesin Eg5 In Com		6e-06
1q0b_A	367	Crystal Structure Of The Motor Protein Ksp In Compl		6e-06
3zcw_A	348	Eg5 - New Allosteric Binding Site Length = 348		6e-06
4ap0_A	370	The Mitotic Kinesin Eg5 In Complex With Mg-Adp And		6e-06
4a28_A	368	Eg5-2 Length = 368		6e-06
4a1z_A	368	Eg5-1 Length = 368		7e-06
3bfn_A	388	Crystal Structure Of The Motor Domain Of Human Kine		7e-06
1vfv_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		1e-05
1ia0_K	394	Kif1a Head-Microtubule Complex Structure In Atp-For		1e-05
1i5s_A	367	Crystal Structure Of The Kif1a Motor Domain Complex		1e-05
1i6i_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		1e-05
2h58_A	330	Crystal Structure Of The Kifc3 Motor Domain In Comp		1e-05
3gbj_A	354	Crystal Structure Of The Motor Domain Of Kinesin Ki		2e-05
1sdm_A	369	Crystal Structure Of Kinesin-Like Calmodulin Bindin		4e-05
2kin_A	238	Kinesin (Monomeric) From Rattus Norvegicus Length =		4e-05
3lre_A	355	Crystal Structure Analysis Of Human Kinesin-8 Motor		7e-05
2vvg_A	350	Crystal Structure Of The G.Intestinalis Kinesin 2 G		3e-04

>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F  D +  D  Q  +  +   DV+   + G +G + C+G    GK+YTM+G+ ++    G
Sbjct: 74  FKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRG 133
Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
           ++P A+  +FR I E+        +VR S +EI + S  + DLLST
Sbjct: 134 ILPRALQQVFRMIEERPTHA---ITVRVSYLEIYNES--LFDLLST 174

>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FDA++ +   Q+++    +  +I +V+ G +G +F +G    GK+YTM G+       
Sbjct: 70  FTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELR 129
Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
           GVIP+A   +F  IS  +++   ++ VRAS +EI    + ++DLLS
Sbjct: 130 GVIPNAFEHIFTHISRSQNQ---QYLVRASYLEI--YQEEIRDLLS 170

>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F FD IF  E  +++    LS +IQ  + G++ C+F +G    GK++TM     S  T G
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM-----SHPTNG 486
Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
           +IP ++  +F  I E K K G  ++VR   IEI + +  + DLL+
Sbjct: 487 MIPLSLKKIFNDIEELKEK-GWSYTVRGKFIEIYNEA--IVDLLN 528

>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 2   FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FDA++  +  Q E+       ++ +V+ G +G +F +G    GK+YTM G        
Sbjct: 70  FTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKR 129
Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
           GVIP++   +F  IS  +++   ++ VRAS +EI    + ++DLLS
Sbjct: 130 GVIPNSFDHIFTHISRSQNQ---QYLVRASYLEI--YQEEIRDLLS 170

>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 1   MFAFDAIFSD-EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           +F+FD +F     QS+I    +S +IQ+ + G + C+F +G    GK+YTM G P+S   
Sbjct: 101 IFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES--- 156
Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
           +GVIP  +  LF  I   ++  G  + ++A+ +EI   ++ + DLLS        R+ 
Sbjct: 157 VGVIPRTVDLLFDSIRGYRN-LGWEYEIKATFLEI--YNEVLYDLLSNEQKDMEIRMA 211

>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 1   MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           +F+FD +F            +S +IQ+ + G + C+F +G +  GK+YTM G P+S   +
Sbjct: 104 IFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPES---V 160
Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
           GVIP  +  LF  I   ++  G  + ++A+ +EI   ++ + DLLS        R+ 
Sbjct: 161 GVIPRTVDLLFDSIRGYRN-LGWEYEIKATFLEI--YNEVLYDLLSNEQKDMEIRMA 214

>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 1   MFAFDAIFSD-EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           +F+FD +F     QS+I    +S +IQ+ + G + C+F +G    GK+YTM G P+S   
Sbjct: 115 IFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES--- 170
Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
           +GVIP  +  LF  I   ++  G  + ++A+ +EI   ++ + DLLS        R+ 
Sbjct: 171 VGVIPRTVDLLFDSIRGYRN-LGWEYEIKATFLEI--YNEVLYDLLSNEQKDMEIRMA 225

>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 1   MFAFDAIFSD-EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           +F+FD +F     QS+I    +S +IQ+ + G + C+F +G    GK+YTM G P+S   
Sbjct: 107 IFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES--- 162
Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
           +GVIP  +  LF  I   ++  G  + ++A+ +EI   ++ + DLLS        R+ 
Sbjct: 163 VGVIPRTVDLLFDSIRGYRN-LGWEYEIKATFLEI--YNEVLYDLLSNEQKDMEIRMA 217

>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 1   MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           +F+FD +F            +S +IQ+ + G + C+F +G    GK+YTM G P+S   +
Sbjct: 104 IFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES---V 160
Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
           GVIP  +  LF  I   ++  G  + ++A+ +EI   ++ + DLLS        R+ 
Sbjct: 161 GVIPRTVDLLFDSIRGYRN-LGWEYEIKATFLEI--YNEVLYDLLSNEQKDMEIRMA 214

>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL- 60
           F+FD +F      +     ++ ++Q+ + G   C+F +G    GK++TM G P     L 
Sbjct: 85  FSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLE 144
Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLK 120
           G+IP A+  LF  ++++    G  +S  AS +EI + +  V+DLL+T +       C ++
Sbjct: 145 GLIPRALRHLF-SVAQELSGQGWTYSFVASYVEIYNET--VRDLLATGTRKGQGGECEIR 201
Query: 121 RFHAEEDE 128
           R     +E
Sbjct: 202 RAGPGSEE 209

>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F FD IF  +  +      +  ++Q+ + G + C+F +G    GK++TM+         G
Sbjct: 65  FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----G 119
Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
           +IPS IS +F  I++ K K G  + V    IEI   ++++ DLL + +N K
Sbjct: 120 IIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNK 167

>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F FD IF  +  +      +  ++Q+ + G + C+F +G    GK++TM+         G
Sbjct: 53  FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----G 107
Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
           +IPS IS +F  I++ K K G  + V    IEI   ++++ DLL + +N K
Sbjct: 108 IIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNK 155

>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F FD IF  +  +      +  ++Q+ + G + C+F +G    GK++TM+         G
Sbjct: 54  FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----G 108
Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
           +IPS IS +F  I++ K K G  + V    IEI   ++++ DLL + +N K
Sbjct: 109 IIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNK 156

>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F FD IF  +  +      +  ++Q+ + G + C+F +G    GK++TM+         G
Sbjct: 54  FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----G 108
Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
           +IPS IS +F  I++ K K G  + V    IEI   ++++ DLL + +N K
Sbjct: 109 IIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNK 156

>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F FD IF  +  +      +  ++Q+ + G + C+F +G    GK++TM+         G
Sbjct: 54  FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----G 108
Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
           +IPS IS +F  I++ K K G  + V    IEI   ++++ DLL + +N K
Sbjct: 109 IIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNK 156

>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FD +F  +E    +     + +I + I G +G +F +G    GK+YTM+GS      L
Sbjct: 46  FNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDH---L 102
Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
           GVIP AI  +F+ I +   +    F +R S +EI + +  + DLL
Sbjct: 103 GVIPRAIHDIFQKIKKFPDR---EFLLRVSYMEIYNET--ITDLL 142

>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F FD IF  +  +      +  ++Q+ + G +  +F +G    GK++TM+         G
Sbjct: 110 FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD-----G 164
Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
           +IPS IS +F  I++ K K G  + V A  IEI   ++++ DLL + +N K
Sbjct: 165 IIPSTISHIFNWINKLKTK-GWDYKVNAEFIEI--YNENIVDLLRSDNNNK 212

>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 2   FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG-SPQSSAT 59
           F FD +F     QS+I   ++   +  +++G +G +F +G    GKSYTM+G S      
Sbjct: 49  FTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDG 108
Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
            GVIP  +  +F  I          ++VR S +EI    + ++DLL+
Sbjct: 109 RGVIPRIVEQIFTSI--LSSAANIEYTVRVSYMEI--YMERIRDLLA 151

>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 15/121 (12%)
Query: 2   FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSP------ 54
           F FD  F  E  Q ++ +  +S +I+ V++G +  +F +G    GK++TMVG+       
Sbjct: 69  FTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKS 128
Query: 55  --QSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
             +  + +G+IP A+S LF    ++       +++R S +E+   ++ + DLLST    K
Sbjct: 129 SWEDDSDIGIIPRALSHLF----DELRMMEVEYTMRISYLEL--YNEELCDLLSTDDTTK 182
Query: 113 F 113
Sbjct: 183 I 183

>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 1   MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           ++ FD +F  +  Q ++   A   ++  V++G +G +F +G    GK++TM G    S  
Sbjct: 52  VYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVK 111
Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
            G+IP  ++ +F  I     +    F ++ S  EI      ++DLL
Sbjct: 112 QGIIPRIVNDIFNHIYAM--EVNLEFHIKVSYYEIYMDK--IRDLL 153

>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           +AFD +F S   Q ++       +++ V+ G +G +F +G    GK++TM G       +
Sbjct: 46  YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 105
Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
           G+IP  +  +F  I          F ++ S  EI      ++DLL
Sbjct: 106 GIIPRIVQDIFNYIYSMDE--NLEFHIKVSYFEIYLDK--IRDLL 146

>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           +AFD +F S   Q ++       +++ V+ G +G +F +G    GK++TM G       +
Sbjct: 46  YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 105
Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
           G+IP  +  +F  I          F ++ S  EI      ++DLL
Sbjct: 106 GIIPRIVQDIFNYIYSMDE--NLEFHIKVSYFEIYLDK--IRDLL 146

>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           +AFD +F S   Q ++       +++ V+ G +G +F +G    GK++TM G       +
Sbjct: 46  YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGM 105
Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
           G+IP  +  +F  I          F ++ S  EI      ++DLL
Sbjct: 106 GIIPRIVQDIFNYIYSMDE--NLEFHIKVSYFEIYLDK--IRDLL 146

>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 15/118 (12%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SP---- 54
           + FD +F +   Q ++  S ++ ++  VI G +  +F +G    GK++TM G  SP    
Sbjct: 66  YTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 55  --QSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
             +     G+IP  +  +F  +++     G  FSV+ S +EI   ++ + DLL+  S+
Sbjct: 126 CWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 177

>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F FD IF  +  ++     +  +IQ+ + G + C+F +G    GK+YTM+         G
Sbjct: 76  FKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD-----G 130
Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
           ++P+ I+ +F  I +   + G  + V    IEI   ++++ DLL
Sbjct: 131 IVPATINHIFSWIDKLAAR-GWSYKVSCEFIEI--YNENIVDLL 171

>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 31  GSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLF-RCISEQKHKTGARFSVRA 89
           G   C+F +G    GKSYTM+G+P      G+IP     LF R  S Q       ++V+ 
Sbjct: 135 GYHTCIFAYGQTGSGKSYTMMGTPDQP---GLIPRTCEDLFQRIASAQDETPNISYNVKV 191
Query: 90  SAIEISSSSQHVKDLLS 106
           S  E+   ++HV+DLL+
Sbjct: 192 SYFEV--YNEHVRDLLA 206

>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F FD IF     ++     +  ++Q+ + G + C+F +G    GK+YTM+     +A  G
Sbjct: 55  FQFDMIFEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML-----NAGDG 109
Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTY 108
           +IP  +S +F+  +  K + G  + +    IEI + +  + DLL  +
Sbjct: 110 MIPMTLSHIFKWTANLKER-GWNYEMECEYIEIYNET--ILDLLRDF 153

>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
           + FD +F +   Q ++  S +  ++  VI G +  +F +G    GK++TM G  SP    
Sbjct: 57  YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 116
Query: 59  T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           T       G+IP  +  +F  +++     G  FSV+ S +EI   ++ + DLL+  S+
Sbjct: 117 TWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 168

>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
           + FD +F +   Q ++  S +  ++  VI G +  +F +G    GK++TM G  SP    
Sbjct: 66  YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 59  T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           T       G+IP  +  +F  +++     G  FSV+ S +EI   ++ + DLL+  S+
Sbjct: 126 TWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 177

>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
           + FD +F +   Q ++  S +  ++  VI G +  +F +G    GK++TM G  SP    
Sbjct: 66  YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 59  T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           T       G+IP  +  +F  +++     G  FSV+ S +EI   ++ + DLL+  S+
Sbjct: 126 TWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 177

>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
           + FD +F +   Q ++  S +  ++  VI G +  +F +G    GK++TM G  SP    
Sbjct: 65  YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 124
Query: 59  T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           T       G+IP  +  +F  +++     G  FSV+ S +EI   ++ + DLL+  S+
Sbjct: 125 TWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 176

>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
           + FD +F +   Q ++  S +  ++  VI G +  +F +G    GK++TM G  SP    
Sbjct: 51  YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 110
Query: 59  T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           T       G+IP  +  +F  +++     G  FSV+ S +EI   ++ + DLL+  S+
Sbjct: 111 TWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 162

>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
           + FD +F +   Q ++  S +  ++  VI G +  +F +G    GK++TM G  SP    
Sbjct: 68  YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 127
Query: 59  T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           T       G+IP  +  +F  +++     G  FSV+ S +EI   ++ + DLL+  S+
Sbjct: 128 TWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 179

>pdb|4A28|A Chain A, Eg5-2 Length = 368

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
           + FD +F +   Q ++  S +  ++  VI G +  +F +G    GK++TM G  SP    
Sbjct: 66  YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 59  TL------GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           T       G+IP  +  +F  +++     G  FSV+ S +EI   ++ + DLL+  S+
Sbjct: 126 TWEEDPLDGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 177

>pdb|4A1Z|A Chain A, Eg5-1 Length = 368

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
           + FD +F +   Q ++  S +  ++  VI G +  +F +G    GK++TM G  SP    
Sbjct: 66  YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 59  T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
           T       G+IP  +  +F  +++     G  FSV+ S +EI   ++ + DLL+  S+
Sbjct: 126 TWEEVPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 177

>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 2   FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           + FDA + +   Q +I   ++  +++ ++ G +  +  +G    GK++TM+GSP+     
Sbjct: 67  YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQP--- 123
Query: 61  GVIPSAISWLFRCISEQKHKTGA-RFSVRASAIEISSSSQHVKDLLSTYSNGKFFR 115
           GVIP A+  L +   E+  +      SV  S +EI    + V DLL   S     R
Sbjct: 124 GVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEI--YQEKVLDLLDPASGDLVIR 177

>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 13  QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR 72
           Q ++      +++Q    G + C+F +G    GKSYTM+G  Q     G+IP     LF 
Sbjct: 70  QKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK-QEKDQQGIIPQLCEDLFS 128
Query: 73  CISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF 113
            I++  +   + +SV  S +EI    + V+DLL+  + G  
Sbjct: 129 RINDTTNDNMS-YSVEVSYMEI--YCERVRDLLNPKNKGNL 166

>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 13  QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR 72
           Q ++      +++Q    G + C+F +G    GKSYTM+G  Q     G+IP     LF 
Sbjct: 86  QKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK-QEKDQQGIIPQLCEDLFS 144
Query: 73  CISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF 113
            I++  +   + +SV  S +EI    + V+DLL+  + G  
Sbjct: 145 RINDTTNDNMS-YSVEVSYMEI--YCERVRDLLNPKNKGNL 182

>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 13  QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR 72
           Q ++      +++Q    G + C+F +G    GKSYTM+G  Q     G+IP     LF 
Sbjct: 70  QKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK-QEKDQQGIIPQLCEDLFS 128
Query: 73  CISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF 113
            I++  +   + +SV  S +EI    + V+DLL+  + G  
Sbjct: 129 RINDTTNDNMS-YSVEVSYMEI--YCERVRDLLNPKNKGNL 166

>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 13  QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR 72
           Q ++      +++Q    G + C+F +G    GKSYTM+G  Q     G+IP     LF 
Sbjct: 70  QKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK-QEKDQQGIIPQLCEDLFS 128
Query: 73  CISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF 113
            I++  +   + +SV  S +EI    + V+DLL+  + G  
Sbjct: 129 RINDTTNDNMS-YSVEVSYMEI--YCERVRDLLNPKNKGNL 166

>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F  D +FS +   +     +  ++ + I G + C+F +G    GK+YTM G+ ++    G
Sbjct: 50  FELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENP---G 106
Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF-FRLC 117
           +   A+  LF  +  Q+  +   +++  SA EI   ++ ++DLL      K   RLC
Sbjct: 107 INQRALQLLFSEV--QEKASDWEYTITVSAAEI--YNEVLRDLLGKEPQEKLEIRLC 159

>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 23  DVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTG 82
           +++Q    G + C+F +G    GKSYTM+G+       G+IP   S LF    +++++  
Sbjct: 83  NILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQP---GLIPRLCSGLFERTQKEENEEQ 139
Query: 83  ARFSVRASAIEISSSSQHVKDLL 105
           + F V  S +EI   ++ V+DLL
Sbjct: 140 S-FKVEVSYMEI--YNEKVRDLL 159

>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 4   FDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVI 63
           +D +F      +        ++Q+ + G + C+F +G    GK++T+ G+  +    G+ 
Sbjct: 51  YDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP---GLT 107
Query: 64  PSAISWLFRCISEQKHKTGARFSVRASAIEI 94
           P A+S LFR + +  +K    FS++A  +E+
Sbjct: 108 PRAMSELFRIMKKDSNKFS--FSLKAYMVEL 136

>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 2   FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           + FD +   +  Q ++  +    +++ V+ G +G +F +G    GK++TM G       +
Sbjct: 46  YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLM 105
Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
           G+IP     +F  I          F ++ S  EI      ++DLL  
Sbjct: 106 GIIPRIAHDIFDHIYSMDE--NLEFHIKVSYFEIYLDK--IRDLLDV 148

>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 2   FAFDAIFSD-EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FDA+F +   QSE+       ++++ ++G +  +  +G    GK++TM+GS       
Sbjct: 74  FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEP--- 130
Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
           GV+   +  L++C+ E K +     +V  S +E+   ++ ++DLL
Sbjct: 131 GVMYLTMLHLYKCMDEIKEEKICSTAV--SYLEV--YNEQIRDLL 171

>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 2   FAFDAIFSDEP-QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FDA++        I  ++   +I AV+ G +  +F +G    GK++TM G+ +     
Sbjct: 58  FTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEP--- 114
Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
           G IP++   LF  I+     +   F V  S +E+   ++ ++DL+
Sbjct: 115 GAIPNSFKHLFDAINSS--SSNQNFLVIGSYLEL--YNEEIRDLI 155

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	2e-18
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	1e-17
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	2e-17
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	5e-17
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	6e-17
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	2e-16
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	2e-16
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	4e-16
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	1e-15
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	1e-15
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	2e-15
3u06_A	412	Protein claret segregational; motor domain, stalk	4e-15
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	6e-15
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	7e-15
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	7e-15
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	9e-15
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	1e-14
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	2e-14
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	2e-14
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	3e-14
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	1e-13
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	5e-13
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	6e-13
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	7e-13
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	2e-12
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score = 79.5 bits (197), Expect = 1e-17
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           +AFD +F S   Q ++       +++ V+ G +G +F +G    GK++TM G       +
Sbjct: 46  YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 105

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
           G+IP  +  +F  I          F ++ S  EI      ++DLL  
Sbjct: 106 GIIPRIVQDIFNYIYSMDENL--EFHIKVSYFEI--YLDKIRDLLDV 148

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score = 79.5 bits (197), Expect = 2e-17
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 1   MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
            F FDA++  +  Q E+       ++ +V+ G +G +F +G    GK+YTM G       
Sbjct: 69  TFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEK 128

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
            GVIP++   +F  IS  +++   ++ VRAS +EI    + ++DLLS     +
Sbjct: 129 RGVIPNSFDHIFTHISRSQNQ---QYLVRASYLEI--YQEEIRDLLSKDQTKR 176

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score = 77.6 bits (192), Expect = 5e-17
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 9/116 (7%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FD +F  +E    +     + +I + I G +G +F +G    GK+YTM+GS      L
Sbjct: 46  FNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDH---L 102

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRL 116
           GVIP AI  +F+ I +   +    F +R S +EI   ++ + DLL      K   +
Sbjct: 103 GVIPRAIHDIFQKIKKFPDR---EFLLRVSYMEI--YNETITDLLCGTQKMKPLII 153

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score = 77.7 bits (192), Expect = 6e-17
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 1   MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
           ++ FD +F  +  Q ++   A   ++  V++G +G +F +G    GK++TM G    S  
Sbjct: 52  VYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVK 111

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
            G+IP  ++ +F  I   +      F ++ S  EI      ++DLL  
Sbjct: 112 QGIIPRIVNDIFNHIYAMEVNL--EFHIKVSYYEI--YMDKIRDLLDV 155

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score = 76.1 bits (188), Expect = 2e-16
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 1   MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
            F FDA++        I  ++   +I AV+ G +  +F +G    GK++TM G+ +    
Sbjct: 57  TFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEP-- 114

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
            G IP++   LF  I+         F V  S +E+   ++ ++DL+   + 
Sbjct: 115 -GAIPNSFKHLFDAINSSSSNQ--NFLVIGSYLEL--YNEEIRDLIKNNTK 160

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score = 76.1 bits (188), Expect = 2e-16
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSP---QSS 57
           F FD  F +   Q E+  + +  ++  ++ G       +G    GKSY+M  +P      
Sbjct: 63  FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122

Query: 58  ATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
             LG++P A+  +F  ++ ++        V AS IEI   ++   DLL +
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEI--YNEKPFDLLGS 170

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score = 75.3 bits (186), Expect = 4e-16
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)

Query: 1   MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
            F FD +F     QS+I   ++   +  +++G +G +F +G    GKSYTM+G+      
Sbjct: 48  SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD 107

Query: 60  L-GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
             GVIP  +  +F  I          ++VR S +EI    + ++DLL+ 
Sbjct: 108 GRGVIPRIVEQIFTSILSSAANI--EYTVRVSYMEI--YMERIRDLLAP 152

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           + FDA +     Q +I   ++  +++ ++ G +  +  +G    GK++TM+GSP+     
Sbjct: 67  YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQP--- 123

Query: 61  GVIPSAISWLFRCISEQKHKT-GARFSVRASAIEISSSSQHVKDLLST 107
           GVIP A+  L +   E+  +      SV  S +EI    + V DLL  
Sbjct: 124 GVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEI--YQEKVLDLLDP 169

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score = 73.8 bits (182), Expect = 1e-15
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FDA+F     QSE+       ++++ ++G +  +  +G    GK++TM+GS       
Sbjct: 74  FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEP--- 130

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
           GV+   +  L++C+ E K +     S   S +E+   ++ ++DLL 
Sbjct: 131 GVMYLTMLHLYKCMDEIKEEK--ICSTAVSYLEV--YNEQIRDLLV 172

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 2   FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
             +D +F  +  Q ++       ++Q+ + G + C+F +G    GK++T+ G+  +    
Sbjct: 49  HMYDRVFDGNATQDDV-FEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSN---P 104

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
           G+ P A+S LFR + +  +K    FS++A  +E+      + DLL      +
Sbjct: 105 GLTPRAMSELFRIMKKDSNKF--SFSLKAYMVEL--YQDTLVDLLLPKQAKR 152

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score = 72.7 bits (179), Expect = 4e-15
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 8/117 (6%)

Query: 2   FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F+FD +F     QS+I     S +IQ+ + G + C+F +G    GK+YTM G P+S   +
Sbjct: 108 FSFDQVFHPLSSQSDIFEMV-SPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES---V 163

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
           GVIP  +  LF  I   ++  G  + ++A+ +EI   ++ + DLLS        R+ 
Sbjct: 164 GVIPRTVDLLFDSIRGYRNL-GWEYEIKATFLEI--YNEVLYDLLSNEQKDMEIRMA 217

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347

 Score = 71.9 bits (177), Expect = 6e-15
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)

Query: 2   FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FD IF   +   ++    +  ++Q+ + G + C+F +G    GK++TM+         
Sbjct: 54  FKFDKIFDQQDTNVDV-FKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----- 107

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLK 120
           G+IPS IS +F  I++ K K G  + V    IEI   ++++ DLL + +N K      LK
Sbjct: 108 GIIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNKEDTSIGLK 164

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330

 Score = 71.8 bits (177), Expect = 7e-15
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 9/112 (8%)

Query: 2   FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F  D +FS    Q ++    +  ++ + I G + C+F +G    GK+YTM G+ +     
Sbjct: 50  FELDKVFSPQASQQDV-FQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAE---NP 105

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
           G+   A+  LF  + E+       +++  SA EI   ++ ++DLL      K
Sbjct: 106 GINQRALQLLFSEVQEKAS--DWEYTITVSAAEI--YNEVLRDLLGKEPQEK 153

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349

 Score = 71.9 bits (177), Expect = 7e-15
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 10/123 (8%)

Query: 2   FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FD IF       EI    +  ++Q+ + G + C+F +G    GK+YTM+ +       
Sbjct: 55  FQFDMIFEPSHTNKEI-FEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD----- 108

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLK 120
           G+IP  +S +F+  +  K + G  + +    IEI   ++ + DLL  + +          
Sbjct: 109 GMIPMTLSHIFKWTANLKER-GWNYEMECEYIEI--YNETILDLLRDFKSHDNIDEILDS 165

Query: 121 RFH 123
           + H
Sbjct: 166 QKH 168

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score = 71.4 bits (176), Expect = 9e-15
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 9/119 (7%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT- 59
           F F  +   D  Q  +  + +  +++A   G +  +F +G    GK+YTM  +  +S   
Sbjct: 52  FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLE 111

Query: 60  --LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRL 116
              G++P A++  F+ I E          V  S +E+    +  +DLL   +  +  +L
Sbjct: 112 DEQGIVPRAMAEAFKLIDENDLL---DCLVHVSYLEV--YKEEFRDLLEVGTASRDIQL 165

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score = 71.5 bits (176), Expect = 1e-14
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 15/120 (12%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSP------ 54
           + FD +F +   Q ++  S +  ++  VI G +  +F +G    GK++TM G        
Sbjct: 57  YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 116

Query: 55  --QSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
             +     G+IP  +  +F  +++   +    FSV+ S +EI   ++ + DLL+  S+  
Sbjct: 117 TWEEDPLAGIIPRTLHQIFEKLTDNGTE----FSVKVSLLEI--YNEELFDLLNPSSDVS 170

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)

Query: 2   FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F FD IF   +   ++    +  ++Q+ + G +  +F +G    GK++TM+         
Sbjct: 110 FKFDKIFDQQDTNVDV-FKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD----- 163

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLK 120
           G+IPS IS +F  I++ K K G  + V A  IEI   ++++ DLL + +N K      LK
Sbjct: 164 GIIPSTISHIFNWINKLKTK-GWDYKVNAEFIEI--YNENIVDLLRSDNNNKEDTSIGLK 220

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score = 70.7 bits (174), Expect = 2e-14
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 15/120 (12%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSP------ 54
           F FD  F  +  Q ++ +  +S +I+ V++G +  +F +G    GK++TMVG+       
Sbjct: 69  FTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKS 128

Query: 55  --QSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
             +  + +G+IP A+S LF  +   +      +++R S +E+   ++ + DLLST    K
Sbjct: 129 SWEDDSDIGIIPRALSHLFDELRMME----VEYTMRISYLEL--YNEELCDLLSTDDTTK 182

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score = 70.0 bits (172), Expect = 3e-14
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 6/111 (5%)

Query: 2   FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           F+FD +F     Q E+    ++ ++Q+ + G   C+F +G    GK++TM G P     L
Sbjct: 85  FSFDRVFPPGSGQDEV-FEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQL 143

Query: 61  -GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
            G+IP A+  LF    E   + G  +S  AS +EI   ++ V+DLL+T + 
Sbjct: 144 EGLIPRALRHLFSVAQELSGQ-GWTYSFVASYVEI--YNETVRDLLATGTR 191

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 14/120 (11%)

Query: 2   FAFDAIF-SDEP-------QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGS 53
           F FD  F S          Q  +  S   + +     G   C+F +G    GKSYTM+G+
Sbjct: 98  FTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT 157

Query: 54  PQSSATLGVIPSAISWLFRCISEQKHKT-GARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
           P      G+IP     LF+ I+  + +T    ++V+ S  E+   ++HV+DLL+     K
Sbjct: 158 PDQP---GLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEV--YNEHVRDLLAPVVPNK 212

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score = 66.4 bits (163), Expect = 5e-13
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 2   FAFDAIF--SDEP-------QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52
           F+FD  +     P       Q ++      +++Q    G + C+F +G    GKSYTM+G
Sbjct: 50  FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG 109

Query: 53  SPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
             +     G+IP     LF  I++  +     +SV  S +EI    + V+DLL+  + G 
Sbjct: 110 KQEKD-QQGIIPQLCEDLFSRINDTTND-NMSYSVEVSYMEI--YCERVRDLLNPKNKGN 165

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score = 66.5 bits (163), Expect = 6e-13
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 2   FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGS---PQSS 57
           F FD  F +      +       ++Q +  G     F +G    GK++TM G       +
Sbjct: 103 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQN 162

Query: 58  ATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
           A+ G+   A   +F   ++  ++      V  +  EI +    + DLL+
Sbjct: 163 ASKGIYAMASRDVFLLKNQPCYR-KLGLEVYVTFFEIYNG--KLFDLLN 208

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score = 66.1 bits (162), Expect = 7e-13
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%)

Query: 2   FAFDAIFSDEP---------QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52
           FA+D  F             Q  +      +++Q    G + C+F +G    GKSYTM+G
Sbjct: 53  FAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMG 112

Query: 53  SPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
           +       G+IP   S LF    +++++    F V  S +EI   ++ V+DLL    + +
Sbjct: 113 TADQP---GLIPRLCSGLFERTQKEENE-EQSFKVEVSYMEI--YNEKVRDLLDPKGSRQ 166

Query: 113 FFRL 116
             ++
Sbjct: 167 TLKV 170

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 2   FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGS---PQSS 57
           F FD  F +      +       ++Q +  G     F +G    GK++TM G       +
Sbjct: 123 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQN 182

Query: 58  ATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
           A+ G+   A   +F   ++ +++      V  +  EI +    V DLL+
Sbjct: 183 ASKGIYAMASRDVFLLKNQPRYR-NLNLEVYVTFFEIYNGK--VFDLLN 228

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 2   FAFDAIFSDE-PQSEICTSALSDVIQAVI-SGSDGCLFCFGHARLGKSYTMVGSPQSSA- 58
           F  D +F D      +  + +  +I  +  +G     F +G    GK+YTM+GS      
Sbjct: 52  FIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQS 111

Query: 59  -TLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
            T G+   A   +F  ++           +  S  EI      + DLL 
Sbjct: 112 DTPGIFQYAAGDIFTFLNIYDKDN--TKGIFISFYEIYCGK--LYDLLQ 156

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 35/262 (13%), Positives = 68/262 (25%), Gaps = 102/262 (38%)

Query: 21  LSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHK 80
           + D+ ++++S  +       H        ++ S  +        S    LF  +  ++ +
Sbjct: 38  VQDMPKSILSKEE-----IDH--------IIMSKDAV-------SGTLRLFWTLLSKQEE 77

Query: 81  TGARFSVRASAIEISSSSQHVKDLLST-YSNGKFFRLCFLK-RFHAE-EDEEMPC----- 132
              +F               V+++L   Y         FL      E     M       
Sbjct: 78  MVQKF---------------VEEVLRINYK--------FLMSPIKTEQRQPSMMTRMYIE 114

Query: 133 ---------PVPPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGGTGSIKS--- 180
                     V    +     +SR       R     L    N  +    G+G  K+   
Sbjct: 115 QRDRLYNDNQVFAKYN-----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG--KTWVA 167

Query: 181 ---FRNFG----FGSGIQY-----CKND---LETLEQYC-----------------KNDF 208
                ++         I +     C +    LE L++                   K   
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 209 NQSTWRNDRLEQLKREKRALLI 230
           +       RL + K  +  LL+
Sbjct: 228 HSIQAELRRLLKSKPYENCLLV 249

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	100.0
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	100.0
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	100.0
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	100.0
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	100.0
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	100.0
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	100.0
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	100.0
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	100.0
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	100.0
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	100.0
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	100.0
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	100.0
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	100.0
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	100.0
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	100.0
3nwn_A	359	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	100.0
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	100.0
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	100.0
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	100.0
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	100.0
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	100.0
3u06_A	412	Protein claret segregational; motor domain, stalk	100.0
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	100.0
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	100.0
4h1g_A	715	Maltose binding protein-cakar3 motor domain fusio;	100.0
2o0a_A	298	S.cerevisiae chromosome XVI reading frame ORF YPL2	99.85
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.52
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	93.18
2qgz_A	308	Helicase loader, putative primosome component; str	91.67
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	89.94
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	89.15
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	87.76
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	87.21
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	86.94
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	86.92
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	86.15
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	85.48
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	84.58
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	84.55
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	83.48
2chg_A	226	Replication factor C small subunit; DNA-binding pr	82.79
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	82.76
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	82.72
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	82.48
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	82.42
3bos_A	242	Putative DNA replication factor; P-loop containing	81.89
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	81.07
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	80.52
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	80.5
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	80.03

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*

Probab=100.00  E-value=3.6e-52  Score=384.75  Aligned_cols=209  Identities=20%  Similarity=0.277  Sum_probs=166.7

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|...++..+|||||++++||+.+.....
T Consensus        52 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~  131 (365)
T 2y65_A           52 VYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEV  131 (365)
T ss_dssp             EEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCS
T ss_pred             EEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccC
Confidence            499999999 9999999999999999999999999999999999999999999887767899999999999999987543


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                        ++.|.|.+||+|||  ||+|+|||++....+.+++++.++++|+|++++.|.+++|++++|+ |.++|++++|.||+.
T Consensus       132 --~~~~~v~vS~~EIY--nE~i~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~  207 (365)
T 2y65_A          132 --NLEFHIKVSYYEIY--MDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEH  207 (365)
T ss_dssp             --CEEEEEEEEEEEEE--TTEEEETTCTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHH
T ss_pred             --CceEEEEEEEEEEE--CCeeeecccCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCC
Confidence              57999999999999  9999999999888899999999999999999999999999999999 999999999999999


Q ss_pred             Cch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         159 SSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       159 SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      |||    |++..++.....+  ..       ..|-|..  +|||||||+.+++     ..+.|+.|...||+||+
T Consensus       208 SSRSH~if~i~v~~~~~~~~--~~-------~~skL~l--VDLAGSEr~~~t~-----~~g~rl~E~~~INkSL~  266 (365)
T 2y65_A          208 SSRSHSVFLINVKQENLENQ--KK-------LSGKLYL--VDLAGSEKVSKTG-----AEGTVLDEAKNINKSLS  266 (365)
T ss_dssp             HHTSEEEEEEEEEEEETTTC--CE-------EEEEEEE--EECCCCCC---------------------CCHHHH
T ss_pred             CCCceEEEEEEEEEEecCCC--CE-------eEEEEEE--EECCCCCcchhcC-----CcchhHHHHHHHHHHHH
Confidence            999    4444333322111  00       0011222  6999999987764     34556666666666654

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=100.00  E-value=1e-51  Score=376.56  Aligned_cols=216  Identities=20%  Similarity=0.275  Sum_probs=180.2

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      .|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+..++..+|||||++++||+.+.....
T Consensus        45 ~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~  124 (325)
T 1bg2_A           45 PYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDE  124 (325)
T ss_dssp             EEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCS
T ss_pred             EEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccC
Confidence            499999999 9999999999999999999999999999999999999999999987777889999999999999987543


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                        ++.|.|.+||+|||  ||+|+|||++....+.+++++.++++|+|++++.|.+++|++++|+ |.++|++++|.||+.
T Consensus       125 --~~~~~v~vS~~EIY--nE~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~  200 (325)
T 1bg2_A          125 --NLEFHIKVSYFEIY--LDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEH  200 (325)
T ss_dssp             --SEEEEEEEEEEEEE--TTEEEESSCTTCCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHH
T ss_pred             --CceEEEEEEEEEEe--cCeeeecccCCCCCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCC
Confidence              47999999999999  9999999999888899999999999999999999999999999999 999999999999999


Q ss_pred             Cch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHHH
Q psy9852         159 SSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       159 SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      ||| ++++...+..........      ..|-|..  +|||||||+.+++     ++++..+|.+|..|++.=.+|
T Consensus       201 SSRSH~if~i~v~~~~~~~~~~------~~skl~l--VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL  268 (325)
T 1bg2_A          201 SSRSHSIFLINVKQENTQTEQK------LSGKLYL--VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL  268 (325)
T ss_dssp             HHHSEEEEEEEEEEEETTTCCE------EEEEEEE--EECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEEEEEEecCCCcE------EEEEEEE--EECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHH
Confidence            999 443333332111100000      0111222  6999999987763     456667777777776655554

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=100.00  E-value=3.6e-51  Score=386.29  Aligned_cols=212  Identities=25%  Similarity=0.330  Sum_probs=163.2

Q ss_pred             CeecceecC-C-------CChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHH
Q psy9852           1 MFAFDAIFS-D-------EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR   72 (241)
Q Consensus         1 tF~FD~VF~-~-------a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~   72 (241)
                      +|+||+||+ +       ++|++||+.++.|+|+++++|||+||||||||||||||||+|.+.   ++|||||++++||+
T Consensus        97 ~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~---~~GIipr~~~~lF~  173 (443)
T 2owm_A           97 SFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPD---QPGLIPRTCEDLFQ  173 (443)
T ss_dssp             EEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTT---SCCHHHHHHHHHHH
T ss_pred             eEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCC---CCchHHHHHHHHHH
Confidence            499999997 4       899999999999999999999999999999999999999999875   58999999999999


Q ss_pred             HHHhccc-CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-----CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-Hh
Q psy9852          73 CISEQKH-KTGARFSVRASAIEISSSSQHVKDLLSTYS-----NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TL  145 (241)
Q Consensus        73 ~i~~~~~-~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-----~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~  145 (241)
                      .++.... ..++.|.|.|||+|||  ||+|+|||++..     ..+.+++++.++++|+|++++.|.+++|++++|+ |.
T Consensus       174 ~i~~~~~~~~~~~~~V~vS~lEIY--nE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~  251 (443)
T 2owm_A          174 RIASAQDETPNISYNVKVSYFEVY--NEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGD  251 (443)
T ss_dssp             HHHHTTTTSTTCEEEEEEEEEEEE--TTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHH
T ss_pred             HHHhhhcccCCceEEEEEEEEEEE--CCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHH
Confidence            9987643 2467999999999999  999999998732     3478999999999999999999999999999999 99


Q ss_pred             cCCCccccCCCCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHH
Q psy9852         146 SRDSLISNKRNDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQL  221 (241)
Q Consensus       146 ~~R~~~~T~~N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  221 (241)
                      ++|++++|.||+.|||    |++..++.......+... .+    -|-|..  +|||||||+.+++     ..++|+.|.
T Consensus       252 ~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~-~~----~skL~l--VDLAGSER~~~t~-----~~g~rlkE~  319 (443)
T 2owm_A          252 GSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTT-ER----SSRIRL--VDLAGSERAKSTE-----ATGQRLREG  319 (443)
T ss_dssp             TTSCBCSSSSSCBCTTEEEEEEEEEEEEC-------CC-EE----EEEEEE--EECCCCCC-------------------
T ss_pred             hhCCcccCcCCCccCCCeEEEEEEEEEeecccCCCCcc-eE----EEEEEE--EECCCCccccccC-----Cccccccch
Confidence            9999999999999999    665555543222111110 01    011222  6999999987763     345555555


Q ss_pred             HHhhHHHH
Q psy9852         222 KREKRALL  229 (241)
Q Consensus       222 ~~~~~~~~  229 (241)
                      ..||+||+
T Consensus       320 ~~INkSL~  327 (443)
T 2owm_A          320 SNINKSLT  327 (443)
T ss_dssp             CCSSHHHH
T ss_pred             hhhcHHHH
Confidence            55555554

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*

Probab=100.00  E-value=3e-51  Score=378.81  Aligned_cols=213  Identities=22%  Similarity=0.291  Sum_probs=173.4

Q ss_pred             CeecceecC-C--------CChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHH
Q psy9852           1 MFAFDAIFS-D--------EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLF   71 (241)
Q Consensus         1 tF~FD~VF~-~--------a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF   71 (241)
                      +|+||+||+ +        ++|++||+.++.|+|+++++|||+||||||||||||||||+|+..+ .++|||||++++||
T Consensus        49 ~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~-~~~Giipr~~~~lF  127 (366)
T 2zfi_A           49 SFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEK-DQQGIIPQLCEDLF  127 (366)
T ss_dssp             EEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGG-GCBCHHHHHHHHHH
T ss_pred             EEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCcc-CCCccHHHHHHHHH
Confidence            499999998 7        8999999999999999999999999999999999999999998642 36899999999999


Q ss_pred             HHHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCC
Q psy9852          72 RCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS-NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDS  149 (241)
Q Consensus        72 ~~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~  149 (241)
                      +.++.... .++.|.|.|||+|||  ||+|+|||++.. ..+.+++++..+++|+|++++.|.+++|++++|+ |.++|+
T Consensus       128 ~~i~~~~~-~~~~~~v~vS~~EIY--nE~v~DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~  204 (366)
T 2zfi_A          128 SRINDTTN-DNMSYSVEVSYMEIY--CERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRT  204 (366)
T ss_dssp             HHHHTCCC-TTEEEEEEEEEEEEE--TTEEEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHT
T ss_pred             HHHhhccc-CCeeEEEEEEEEEee--CCeEEEccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccc
Confidence            99987644 357999999999999  999999998875 4678999999999999999999999999999999 999999


Q ss_pred             ccccCCCCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhh
Q psy9852         150 LISNKRNDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREK  225 (241)
Q Consensus       150 ~~~T~~N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (241)
                      +++|.||+.|||    |++..++...+...+. ...+    -|-|..  +|||||||+.+++     ..++|+.|...||
T Consensus       205 ~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~-~~~~----~skL~l--VDLAGSEr~~~t~-----~~g~rl~E~~~IN  272 (366)
T 2zfi_A          205 VAATNMNETSSRSHAVFNIIFTQKRHDAETNI-TTEK----VSKISL--VDLAGSERADSTG-----AKGTRLKEGANIN  272 (366)
T ss_dssp             SGGGGTTTHHHHSEEEEEEEEEEEEECTTTTC-EEEE----EEEEEE--EECCCGGGC-----------CCCHHHHHHHH
T ss_pred             cccccCCCCCCcceEEEEEEEEEecccCCCCc-ccee----EeEEEE--EeCCCCccccccC-----CCccchhhhhhHh
Confidence            999999999999    5554444332222111 0001    011222  6999999987753     5677788888888


Q ss_pred             HHHH
Q psy9852         226 RALL  229 (241)
Q Consensus       226 ~~~~  229 (241)
                      +||+
T Consensus       273 kSL~  276 (366)
T 2zfi_A          273 KSLT  276 (366)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=5.9e-51  Score=375.50  Aligned_cols=205  Identities=20%  Similarity=0.263  Sum_probs=156.9

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      .|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+..   ++|||||++++||+.++....
T Consensus        73 ~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~---~~Giipr~~~~lf~~i~~~~~  149 (355)
T 3lre_A           73 KFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSAD---EPGVMYLTMLHLYKCMDEIKE  149 (355)
T ss_dssp             EEECSEEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHHTTT
T ss_pred             eEEeceEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCC---CCCeeehhhhHHHHhhhhhcc
Confidence            399999999 9999999999999999999999999999999999999999999876   589999999999999998654


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                        ...+.|.|||+|||  ||+|+|||++. ..+.+++++.++++|+|++++.|.+++|+.++|+ |.++|++++|.||+.
T Consensus       150 --~~~~~v~vS~~EIY--nE~i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~  224 (355)
T 3lre_A          150 --EKICSTAVSYLEVY--NEQIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNAT  224 (355)
T ss_dssp             --TEEEEEEEEEEEEE--TTEEEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CB
T ss_pred             --CceEEEEEEEEEEE--CCEEEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCC
Confidence              36899999999999  99999999875 4588999999999999999999999999999999 999999999999999


Q ss_pred             Cch----hhhhceeeeCCCCCCcccccccccccccccccc---ccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         159 SSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCK---NDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       159 SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      |||    |++..++.......+.           .++.+|   +|||||||+.+++     ..+.|+.|...||+||+
T Consensus       225 SSRSH~if~i~v~~~~~~~~~~~-----------~~~~skl~lVDLAGSEr~~~t~-----~~g~rl~E~~~INkSL~  286 (355)
T 3lre_A          225 SSRSHAVFQIYLRQQDKTASINQ-----------NVRIAKMSLIDLAGSERASTSG-----AKGTRFVEGTNINRSLL  286 (355)
T ss_dssp             CTTCEEEEEEEEEEEETTSCTTC-----------CCCCEEEEEEECCCCCC----------------------CHHHH
T ss_pred             CCCCcEEEEEEEEEecCCCCCCC-----------CEEEEEEEEEECCCCCcCcCCC-----CccHHHHHHHHHHHHHH
Confidence            999    4444444322211111           112233   5999999987764     45666666777777664

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.1e-51  Score=379.95  Aligned_cols=212  Identities=22%  Similarity=0.271  Sum_probs=157.7

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      .|+||+||+ +++|++||+..+.|+|+++++|||+||||||||||||||||+|++.   ++|||||++++||+.++....
T Consensus        66 ~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~---~~Giipra~~~lF~~i~~~~~  142 (388)
T 3bfn_A           66 KYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPE---QPGVIPRALMDLLQLTREEGA  142 (388)
T ss_dssp             EEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHHHTS
T ss_pred             EEEcceEecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCcc---ccchhHHHHHHHHHHHHHhhc
Confidence            499999999 9999999999999999999999999999999999999999999876   589999999999999987432


Q ss_pred             -CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCC
Q psy9852          80 -KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRND  157 (241)
Q Consensus        80 -~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~  157 (241)
                       ...+.|.|.|||+|||  ||+|+|||++....+.+++++.++++|+|++++.|.+++|+.++|. |.++|++++|.||+
T Consensus       143 ~~~~~~~~V~vS~lEIY--nE~i~DLL~~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~  220 (388)
T 3bfn_A          143 EGRPWALSVTMSYLEIY--QEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQ  220 (388)
T ss_dssp             TTCSEEEEEEEEEEEEE--TTEEEESSSCSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------
T ss_pred             cCCCceEEEEEEEEEEE--CCeeeehhccCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCC
Confidence             2357899999999999  9999999999888899999999999999999999999999999999 99999999999999


Q ss_pred             CCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHH
Q psy9852         158 NSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRA  227 (241)
Q Consensus       158 ~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  227 (241)
                      .|||    |++..++........  .  +    .|-|..  +|||||||+.+++     +.++..+|.+|..|++.=.+
T Consensus       221 ~SSRSH~If~i~v~~~~~~~~~~--~--~----~skL~l--VDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~a  289 (388)
T 3bfn_A          221 RSSRSHAVLLVKVDQRERLAPFR--Q--R----EGKLYL--IDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDA  289 (388)
T ss_dssp             CGGGSEEEEEEEEEEEESSTTCC--E--E----EEEEEE--EECCCTTC--------------CCCCHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEEEEEeccCCCCc--e--e----EEEEEE--EECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHH
Confidence            9999    444444332211100  0  0    011222  6999999987763     34444555555555444333

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.5e-50  Score=370.51  Aligned_cols=214  Identities=24%  Similarity=0.293  Sum_probs=175.3

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|++.   ++|||||++++||+.++... 
T Consensus        45 ~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~---~~Giipr~~~~lF~~i~~~~-  120 (349)
T 1t5c_A           45 SFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSED---HLGVIPRAIHDIFQKIKKFP-  120 (349)
T ss_dssp             EEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHGGGCT-
T ss_pred             EEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCCC---CCchHHHHHHHHHHHHHhCc-
Confidence            499999999 9999999999999999999999999999999999999999999875   58999999999999998753 


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC--CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYS--NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRN  156 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~--~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N  156 (241)
                        +..|.|.|||+|||  ||+|+|||++..  +.+.+++++.++++|+|++++.|.+++|++++|. |.++|++++|.||
T Consensus       121 --~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N  196 (349)
T 1t5c_A          121 --DREFLLRVSYMEIY--NETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMN  196 (349)
T ss_dssp             --TEEEEEEEEEEEEE--TTEEEESSSSSCTTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred             --CCcEEEEEEEEEEe--CCEEEEccCCCCCCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCC
Confidence              46999999999999  999999998764  4578899999999999999999999999999999 9999999999999


Q ss_pred             CCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhc-----cccccccchhhHHHHHHhhHH
Q psy9852         157 DNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKN-----DFNQSTWRNDRLEQLKREKRA  227 (241)
Q Consensus       157 ~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  227 (241)
                      +.|||    |++..++.............+    -|-|.  =+|||||||+.++     .+.++..+|.+|..|++.=++
T Consensus       197 ~~SSRSH~if~i~v~~~~~~~~~~~~~~~~----~skL~--lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~a  270 (349)
T 1t5c_A          197 QRSSRSHTIFRMILESREKGEPSNCEGSVK----VSHLN--LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKK  270 (349)
T ss_dssp             CTTTTCEEEEEEEEEEEECC-------CEE----EEEEE--EEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHH
T ss_pred             CCCCCceEEEEEEEEEeccCCCcCcCccEE----EEEEE--EEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHH
Confidence            99999    555545443222111000000    01122  2699999998775     356777777777777776555


Q ss_pred             H
Q psy9852         228 L  228 (241)
Q Consensus       228 ~  228 (241)
                      |
T Consensus       271 L  271 (349)
T 1t5c_A          271 L  271 (349)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}

Probab=100.00  E-value=5e-51  Score=375.29  Aligned_cols=204  Identities=21%  Similarity=0.291  Sum_probs=150.7

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+..   ++|||||++++||+.++... 
T Consensus        57 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~---~~Giipr~~~~lF~~i~~~~-  132 (350)
T 2vvg_A           57 TFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKE---EPGAIPNSFKHLFDAINSSS-  132 (350)
T ss_dssp             EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHTCC-
T ss_pred             EeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCc---cCchHHHHHHHHHHHHHhhc-
Confidence            499999999 9999999999999999999999999999999999999999999985   58999999999999998643 


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                       .++.|.|.+||+|||  ||+|+|||++ ...+.+++++.++++|+|++++.|.+++|+.++|. |.++|++++|.||+.
T Consensus       133 -~~~~~~v~vS~~EIY--nE~i~DLL~~-~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~  208 (350)
T 2vvg_A          133 -SNQNFLVIGSYLELY--NEEIRDLIKN-NTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDT  208 (350)
T ss_dssp             -TTEEEEEEEEEEEEE--TTEEEETTTT-EEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------
T ss_pred             -cCCcEEEEEEEEEEe--CCEEEEcccC-CcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCC
Confidence             347999999999999  9999999974 44578899999999999999999999999999999 999999999999999


Q ss_pred             Cch----hhhhceeeeCCCCCCcccccccccccccccccc---ccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         159 SSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCK---NDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       159 SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      |||    |++..++.....+..            .++.+|   +|||||||+.+++     ..++|+.|...||+||+
T Consensus       209 SSRSH~if~i~v~~~~~~~~~~------------~~~~skl~lVDLAGSEr~~~t~-----~~g~rl~E~~~IN~SL~  269 (350)
T 2vvg_A          209 SSRSHSIFMVRIECSEVIENKE------------VIRVGKLNLVDLAGSERQSKTG-----ATGETLVEGAKINLSLS  269 (350)
T ss_dssp             CTTCEEEEEEEEEEEEC----C------------EEEEEEEEEEECCCCCC--------------------CTTHHHH
T ss_pred             CCcceEEEEEEEEEeeccCCCc------------cEEEEEEEEEeCCCCCcccccc-----ccHHHHHHHHHHhHHHH
Confidence            999    444433332111110            012233   6999999988763     34555666666666654

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9

Probab=100.00  E-value=8.3e-51  Score=374.49  Aligned_cols=213  Identities=22%  Similarity=0.309  Sum_probs=174.7

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC-CCCCCCchHHHHHHHHHHHHhcc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ-SSATLGVIPSAISWLFRCISEQK   78 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~-~~~~~GIipr~~~~LF~~i~~~~   78 (241)
                      +|.||+||+ +++|++||+..+.|+|+++++|||+||||||||||||||||+|++. ++..+|||||++++||+.+....
T Consensus        48 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~  127 (355)
T 1goj_A           48 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSA  127 (355)
T ss_dssp             EEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSC
T ss_pred             EEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcc
Confidence            499999999 9999999999999999999999999999999999999999999753 24578999999999999998754


Q ss_pred             cCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCC
Q psy9852          79 HKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRND  157 (241)
Q Consensus        79 ~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~  157 (241)
                      .  ++.|.|.+||+|||  ||+|+|||++....+.+++++.++++|+|++++.|.+++|++++|+ |.++|++++|.||+
T Consensus       128 ~--~~~~~v~vS~~EIY--nE~i~DLL~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~  203 (355)
T 1goj_A          128 A--NIEYTVRVSYMEIY--MERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQ  203 (355)
T ss_dssp             T--TEEEEEEEEEEEEE--TTEEEETTSTTCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             c--CceEEEEEEEEEEE--CCEEEEcccCccCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCC
Confidence            3  47999999999999  9999999999988899999999999999999999999999999999 99999999999999


Q ss_pred             CCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHHH
Q psy9852         158 NSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       158 ~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      .|||    |++..++...+.  +..   +    .|-|..  +|||||||+.+++     +.++..+|.+|..|++.=++|
T Consensus       204 ~SSRSH~if~i~v~~~~~~~--~~~---~----~skL~l--VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL  272 (355)
T 1goj_A          204 ESSRSHSIFVITITQKNVET--GSA---K----SGQLFL--VDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL  272 (355)
T ss_dssp             CGGGCEEEEEEEEEEEETTT--TEE---E----EEEEEE--EECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHH
T ss_pred             CCCCceEEEEEEEEEeccCC--Cce---e----eeEEEE--EECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHH
Confidence            9999    444433332211  111   0    011222  6999999987753     344445555555555444433

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*

Probab=100.00  E-value=7.9e-51  Score=376.48  Aligned_cols=212  Identities=25%  Similarity=0.332  Sum_probs=171.0

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|+||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|...++.++|||||++++||+.++..  
T Consensus        69 ~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~--  146 (372)
T 3b6u_A           69 TFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRS--  146 (372)
T ss_dssp             EEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTC--
T ss_pred             EEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhc--
Confidence            499999999 99999999999999999999999999999999999999999998876668899999999999999874  


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYS-NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRND  157 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~  157 (241)
                       .++.|.|.+||+|||  ||+|+|||++.. ..+.+++++.++++|+|++++.|.+++|++++|+ |.++|++++|.||+
T Consensus       147 -~~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~  223 (372)
T 3b6u_A          147 -QNQQYLVRASYLEIY--QEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNE  223 (372)
T ss_dssp             -SSCEEEEEEEEEEEE--TTEEEETTSSCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHH
T ss_pred             -cCCceEEEEEEEEEe--CCEEEECCCCCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCC
Confidence             346999999999999  999999998764 5678999999999999999999999999999999 99999999999999


Q ss_pred             CCch----hhhhceeeeCCCCCCcccccccccccccccccc---ccchhhhhhhhcc-----ccccccchhhHHHHHHhh
Q psy9852         158 NSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCK---NDLETLEQYCKND-----FNQSTWRNDRLEQLKREK  225 (241)
Q Consensus       158 ~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  225 (241)
                      .|||    |++..++.. ....+..          .++.+|   +|||||||+.+++     +.++..+|.+|..|++.=
T Consensus       224 ~SSRSH~If~i~v~~~~-~~~~~~~----------~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI  292 (372)
T 3b6u_A          224 HSSRSHAIFVITIECSE-VGLDGEN----------HIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVI  292 (372)
T ss_dssp             HHHTSEEEEEEEEEEEC------CC----------CEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHH
T ss_pred             CCCcceEEEEEEEEEee-cCCCCCc----------ceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHH
Confidence            9999    444433322 1111110          112233   5999999988764     345555555555555544


Q ss_pred             HHH
Q psy9852         226 RAL  228 (241)
Q Consensus       226 ~~~  228 (241)
                      .+|
T Consensus       293 ~aL  295 (372)
T 3b6u_A          293 SAL  295 (372)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.1e-50  Score=368.60  Aligned_cols=205  Identities=20%  Similarity=0.288  Sum_probs=167.4

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||+|++.   ++|||||++++||+.++... 
T Consensus        49 ~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~---~~Giipr~~~~lF~~i~~~~-  123 (330)
T 2h58_A           49 SFELDKVFSPQASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAE---NPGINQRALQLLFSEVQEKA-  123 (330)
T ss_dssp             EEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHTSC-
T ss_pred             EEecCeEeCCCCCcHhHHHH-HHHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCC---CCcHHHHHHHHHHHhhhccc-
Confidence            499999999 9999999996 69999999999999999999999999999999876   58999999999999998654 


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-CCceEE--EccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYS-NGKFFR--LCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR  155 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-~~~~l~--~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~  155 (241)
                       ..+.|.|.|||+|||  ||+|+|||++.. ..+.++  +++.++++|+|++++.|.+++|++++|+ |.++|++++|.|
T Consensus       124 -~~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~  200 (330)
T 2h58_A          124 -SDWEYTITVSAAEIY--NEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNL  200 (330)
T ss_dssp             -TTEEEEEEEEEEEEE--TTEEEETTSCSSCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCS
T ss_pred             -CCceEEEEEEEEEEE--CCChhhcccccccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccC
Confidence             347999999999999  999999998754 334455  5778999999999999999999999999 999999999999


Q ss_pred             CCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         156 NDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       156 N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      |+.|||    |++..++.....+  ..       .-|-|..  +|||||||+.++     +..+.|+.|...||+||+
T Consensus       201 N~~SSRSH~if~i~v~~~~~~~~--~~-------~~skL~l--VDLAGSEr~~~t-----~~~g~r~~E~~~IN~SL~  262 (330)
T 2h58_A          201 NEHSSRSHALLIVTVRGVDCSTG--LR-------TTGKLNL--VDLAGSERVGKS-----GAEGSRLREAQHINKSLS  262 (330)
T ss_dssp             CSCGGGSEEEEEEEEEEEETTTT--EE-------EEEEEEE--EECCCCCCCC-----------HHHHHHHHHHHHHH
T ss_pred             CCCcCCccEEEEEEEEEEecCCC--cE-------EEEEEEE--EeCCCCCccccc-----CCchhhhHHHHHhhHhHH
Confidence            999999    4444433322111  10       0011222  699999988776     456889999999999986

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*

Probab=100.00  E-value=3e-50  Score=372.36  Aligned_cols=205  Identities=20%  Similarity=0.263  Sum_probs=174.4

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      .|.||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||+|++.   ++|||||++++||+.++....
T Consensus        48 ~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~---~~Giipr~~~~lF~~i~~~~~  123 (369)
T 3cob_A           48 QHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADS---NPGLTPRAMSELFRIMKKDSN  123 (369)
T ss_dssp             EEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHHTTT
T ss_pred             EEecCEEECCCCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCCC---CCchhHHHHHHHHHHHHhhcc
Confidence            499999999 9999999997 79999999999999999999999999999999985   589999999999999987654


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC---CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYS---NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR  155 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~---~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~  155 (241)
                        .+.|.|.+||+|||  ||+|+|||++..   ..+.+++++.++++|+|++++.|.++++++++|. |.++|++++|.|
T Consensus       124 --~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~  199 (369)
T 3cob_A          124 --KFSFSLKAYMVELY--QDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLM  199 (369)
T ss_dssp             --TEEEEEEEEEEEEC--SSCEEESSCCSSSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCT
T ss_pred             --CceeEEEEEEEEEe--CceeeecCCCcccCCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccC
Confidence              37999999999999  999999998753   4578999999999999999999999999999999 999999999999


Q ss_pred             CCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         156 NDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       156 N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      |+.|||    |++..++.....  +..   .    -|-|.  -+|||||||+.++     +..+.|+.|...||+||+
T Consensus       200 N~~SSRSH~if~i~v~~~~~~~--~~~---~----~skL~--lVDLAGSEr~~~t-----~~~g~rl~E~~~INkSL~  261 (369)
T 3cob_A          200 NEQSSRSHLIVSVIIESTNLQT--QAI---A----RGKLS--FVDLAGSERVKKS-----GSAGNQLKEAQSINKSLS  261 (369)
T ss_dssp             TCHHHHSEEEEEEEEEEEETTT--CCE---E----EEEEE--EEECCCSSCCCCC-----SSCSHHHHHHHHHTHHHH
T ss_pred             CCCCCcceEEEEEEEEEecCCC--CcE---E----EEEEE--EEeCCCCCccccc-----CccchhhHHHHHHHHHHH
Confidence            999999    444433332111  111   0    01122  2699999888765     456788999999999885

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*

Probab=100.00  E-value=7.4e-50  Score=367.22  Aligned_cols=206  Identities=26%  Similarity=0.352  Sum_probs=156.2

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||+|++     +|||||++++||+.++....
T Consensus        53 ~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~-----~Giipr~~~~lF~~i~~~~~  126 (347)
T 1f9v_A           53 EFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINKLKT  126 (347)
T ss_dssp             EEEESEEECTTCCHHHHHHH-HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHSTT-----TSHHHHHHHHHHHHHHHHGG
T ss_pred             EEeeCEEECCCCCHHHHHHH-HHHHHHHhcCCceeEEEEECCCCCCCcEeccCCC-----CCchHHHHHHHHHHHHhhhh
Confidence            499999999 9999999997 6799999999999999999999999999999964     59999999999999987654


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCC---------CceEEEc-cCCcEEecCcEEEeCCCHHHHHHHHH-HhcCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSN---------GKFFRLC-FLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRD  148 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~---------~~~l~~~-~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R  148 (241)
                      . ++.|.|.|||+|||  ||+|+|||++...         .+.++++ ..++++|+|++++.|.+++++.++|+ |.++|
T Consensus       127 ~-~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R  203 (347)
T 1f9v_A          127 K-GWDYKVNCEFIEIY--NENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLR  203 (347)
T ss_dssp             G-TCEEEEEEEEEEEE--TTEEEETTC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC---
T ss_pred             c-CCceEEEEEEEEEE--CCeeeeccCCccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhcc
Confidence            3 57999999999999  9999999987654         2456665 46789999999999999999999999 99999


Q ss_pred             CccccCCCCCCch-hhhhceeeeCCC-CCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhH
Q psy9852         149 SLISNKRNDNSSL-YSNSNERLHDPG-GTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKR  226 (241)
Q Consensus       149 ~~~~T~~N~~SSr-f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (241)
                      ++++|.||+.||| ++++...+.... ..+.. ..      |-|..  +|||||||+.++     +..++|+.|...||+
T Consensus       204 ~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~-~~------skL~l--VDLAGSEr~~~t-----~~~g~rl~E~~~IN~  269 (347)
T 1f9v_A          204 STASTASNEHSSASHSIFIIHLSGSNAKTGAH-SY------GTLNL--VDLAGSERINVS-----QVVGDRLRETQNINK  269 (347)
T ss_dssp             --------CCGGGSEEEEEEEEEEECC--CCE-EE------EEEEE--EECCCCCCCCGG-----GCCHHHHHHHHHHHH
T ss_pred             ceeeccCCCCCCCceEEEEEEEEEecCCCCce-ee------eEEEE--EECCCCcccccc-----ccchhhhHHHHHHhH
Confidence            9999999999999 444333332111 11111 00      01222  699999988665     467899999999999


Q ss_pred             HHH
Q psy9852         227 ALL  229 (241)
Q Consensus       227 ~~~  229 (241)
                      ||+
T Consensus       270 SL~  272 (347)
T 1f9v_A          270 SLS  272 (347)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            986

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*

Probab=100.00  E-value=1.6e-49  Score=364.55  Aligned_cols=216  Identities=19%  Similarity=0.218  Sum_probs=153.9

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCC---CCCCCchHHHHHHHHHHHHh
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS---SATLGVIPSAISWLFRCISE   76 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~---~~~~GIipr~~~~LF~~i~~   76 (241)
                      .|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||.|....   ..++|||||++++||+.++.
T Consensus        51 ~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~  130 (344)
T 4a14_A           51 HFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDE  130 (344)
T ss_dssp             EEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhccc
Confidence            499999999 99999999999999999999999999999999999999999998532   34789999999999999987


Q ss_pred             cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC--CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCcccc
Q psy9852          77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYS--NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISN  153 (241)
Q Consensus        77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~--~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T  153 (241)
                      ..   ...|.|.|||+|||  ||+|+|||++..  +.+.+++++.++++|+|++++.|.+++|++++|+ |.++|++++|
T Consensus       131 ~~---~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T  205 (344)
T 4a14_A          131 ND---LLDCLVHVSYLEVY--KEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGAT  205 (344)
T ss_dssp             CT---TSEEEEEEEEEEEE--TTEEEETTSSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC---
T ss_pred             cc---ceeeEEEEehhhhh--HHHHHHHHHhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcc
Confidence            63   46999999999999  999999998653  4578899999999999999999999999999999 9999999999


Q ss_pred             CCCCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         154 KRNDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       154 ~~N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      .||+.|||    |++..++....... ....-..-..-|.|..  +|||||||+.+++     ..+.|+.|...||+||+
T Consensus       206 ~~N~~SSRSH~If~i~v~~~~~~~~~-~~~~~~~~~~~skl~l--VDLAGSEr~~~t~-----~~g~rl~E~~~IN~SL~  277 (344)
T 4a14_A          206 HLNHLSSRSHTVFTVTLEQRGRAPSR-LPRPAPGQLLVSKFHF--VDLAGSERVLKTG-----STGERLKESIQINSSLL  277 (344)
T ss_dssp             ---CCGGGSEEEEEEEEEEEC-------------CEEEEEEEE--EECCCCCCC-------------------CCCSHHH
T ss_pred             hhhhcccccceEEEEEeeeCCCCccc-CCCccccceeeeeeeE--EecccchhhcccC-----CchhhhhhheeechhHH
Confidence            99999999    44444433211110 0000000000011222  6999999987663     34445555555555543

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=100.00  E-value=1.3e-49  Score=366.42  Aligned_cols=211  Identities=22%  Similarity=0.293  Sum_probs=151.6

Q ss_pred             Ceecceec--------C-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHH
Q psy9852           1 MFAFDAIF--------S-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLF   71 (241)
Q Consensus         1 tF~FD~VF--------~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF   71 (241)
                      +|.||+||        + .++|++||+.++.|+|+++++|||+||||||||||||||||+|+..   ++|||||++++||
T Consensus        52 ~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~---~~Giipr~~~~lF  128 (354)
T 3gbj_A           52 VFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTAD---QPGLIPRLCSGLF  128 (354)
T ss_dssp             EEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSS---SBCHHHHHHHHHH
T ss_pred             EEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCC---CCchhhHHHHHHH
Confidence            49999999        4 5789999999999999999999999999999999999999999876   5899999999999


Q ss_pred             HHHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC--CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCC
Q psy9852          72 RCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS--NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRD  148 (241)
Q Consensus        72 ~~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~--~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R  148 (241)
                      +.++.... .++.|.|.|||+|||  ||+|+|||++..  ..+.+++++..+++|+|++++.|.+++|+.++|+ |.++|
T Consensus       129 ~~i~~~~~-~~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R  205 (354)
T 3gbj_A          129 ERTQKEEN-EEQSFKVEVSYMEIY--NEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSR  205 (354)
T ss_dssp             HHHHHHCB-TTEEEEEEEEEEEEE--TTEEEETTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC
T ss_pred             HHHHhhcc-cccceeeeceeEEEe--cCeeeEccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcC
Confidence            99986544 357899999999999  999999998763  5678899999999999999999999999999999 99999


Q ss_pred             CccccCCCCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHh
Q psy9852         149 SLISNKRNDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKRE  224 (241)
Q Consensus       149 ~~~~T~~N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (241)
                      ++++|.||+.|||    |++..++...+...+... .+    .|-|..  +|||||||+.++     +..++|+.|...|
T Consensus       206 ~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~-~~----~skL~l--VDLAGSEr~~~t-----~~~g~rl~E~~~I  273 (354)
T 3gbj_A          206 TVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSG-EK----VGKLSL--VDLAGSERATKT-----GAAGDRLKEGSNI  273 (354)
T ss_dssp             ----------CTTSEEEEEEEEEEEEECTTSCEEE-EE----EEEEEE--EECCCCCCCCCC-----C------CHHHHH
T ss_pred             CeeecCCCCCCCcccEEEEEEEEEEecccCCCCCC-ee----EEEEEE--EECCCCCchhhc-----CCccccchhHHHh
Confidence            9999999999999    554444332111111110 00    011222  699999987765     4456777777777


Q ss_pred             hHHHH
Q psy9852         225 KRALL  229 (241)
Q Consensus       225 ~~~~~  229 (241)
                      |+||+
T Consensus       274 N~SL~  278 (354)
T 3gbj_A          274 NKSLT  278 (354)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            77775

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.4e-49  Score=368.65  Aligned_cols=209  Identities=24%  Similarity=0.360  Sum_probs=150.1

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC-CCCCCCchHHHHHHHHHHHHhcc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ-SSATLGVIPSAISWLFRCISEQK   78 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~-~~~~~GIipr~~~~LF~~i~~~~   78 (241)
                      +|+||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||+|+.. ++..+|||||++++||+.++...
T Consensus        84 ~F~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~  162 (376)
T 2rep_A           84 DFSFDRVFPPGSGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELS  162 (376)
T ss_dssp             EEECSEEECTTCCHHHHHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGG
T ss_pred             eeeecEEcCCcccchhhhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhh
Confidence            399999999 9999999997 67999999999999999999999999999999865 33578999999999999998765


Q ss_pred             cCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-----CCceEEEc--cCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCc
Q psy9852          79 HKTGARFSVRASAIEISSSSQHVKDLLSTYS-----NGKFFRLC--FLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSL  150 (241)
Q Consensus        79 ~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-----~~~~l~~~--~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~  150 (241)
                      .. ++.|.|.+||+|||  ||+|+|||++..     ..+.++++  +.++++|+|++++.|.+++|+.++|+ |.++|++
T Consensus       163 ~~-~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~  239 (376)
T 2rep_A          163 GQ-GWTYSFVASYVEIY--NETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAV  239 (376)
T ss_dssp             GG-TEEEEEEEEEEEEE--TTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHH
T ss_pred             cC-CeEEEEEEEEEEEE--CCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhccc
Confidence            43 57999999999999  999999998752     34577887  67899999999999999999999999 9999999


Q ss_pred             cccCCCCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccch----hhHHHHH
Q psy9852         151 ISNKRNDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRN----DRLEQLK  222 (241)
Q Consensus       151 ~~T~~N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~  222 (241)
                      ++|.||+.|||    |++..+......  +..       ..|-|..  +|||||||+.+++     ..+    +|+.|..
T Consensus       240 ~~T~~N~~SSRSH~Ifti~v~~~~~~~--~~~-------~~skL~l--VDLAGSEr~~~t~-----~~g~~~~~rlkE~~  303 (376)
T 2rep_A          240 ARTAQNERSSRSHSVFQLQISGEHSSR--GLQ-------CGAPLSL--VDLAGSERLDPGL-----ALGPGERERLRETQ  303 (376)
T ss_dssp             CC-----CGGGSEEEEEEEEEEEESSS--CCE-------EEEEEEE--EECCCCC-------------------------
T ss_pred             ccccCCCCCCCceEEEEEEEEEEecCC--CcE-------EEeEEEE--EECCCCccccccc-----ccCccccchhhHHh
Confidence            99999999999    444433332111  110       1111222  6999999987753     223    5555555


Q ss_pred             HhhHHHH
Q psy9852         223 REKRALL  229 (241)
Q Consensus       223 ~~~~~~~  229 (241)
                      .||+||+
T Consensus       304 ~INkSL~  310 (376)
T 2rep_A          304 AINSSLS  310 (376)
T ss_dssp             ----CHH
T ss_pred             HhhHHHH
Confidence            5555553

>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-49  Score=367.05  Aligned_cols=212  Identities=25%  Similarity=0.316  Sum_probs=160.6

Q ss_pred             CeecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhcccC
Q psy9852           1 MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHK   80 (241)
Q Consensus         1 tF~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~~   80 (241)
                      +|+||+||++++|++||+.++.|+|+++++|||+||||||||||||||||+|+..+..++|||||++++||+.++...  
T Consensus        73 ~F~FD~Vf~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~--  150 (359)
T 3nwn_A           73 SFKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERP--  150 (359)
T ss_dssp             EEECSEEEESCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCT--
T ss_pred             EeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCC--
Confidence            499999999888999999999999999999999999999999999999999998776789999999999999988764  


Q ss_pred             CCcEEEEEEEEEEEeCCCCeEEEcCCCCC------CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCcccc
Q psy9852          81 TGARFSVRASAIEISSSSQHVKDLLSTYS------NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISN  153 (241)
Q Consensus        81 ~~~~~~V~vS~lEIY~~nE~v~DLL~~~~------~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T  153 (241)
                       ++.|.|.|||+|||  ||+|+|||++..      ....+++++ .|+++++++++.|.+++|+.++|. |.++|++++|
T Consensus       151 -~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T  226 (359)
T 3nwn_A          151 -THAITVRVSYLEIY--NESLFDLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASH  226 (359)
T ss_dssp             -TSCEEEEEEEEEEE--TTEEEETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcEEEEEEEEEEe--ccccccccccccccccccccceEEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccc
Confidence             45899999999999  999999997643      234556555 579999999999999999999999 9999999999


Q ss_pred             CCCCCCch-hhhhceeeeC---CCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHh
Q psy9852         154 KRNDNSSL-YSNSNERLHD---PGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKRE  224 (241)
Q Consensus       154 ~~N~~SSr-f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  224 (241)
                      .||..||| ++++...+..   ....+..   .    -|-+..  +|||||||+.+++     +.++..+|.+|..|++.
T Consensus       227 ~~N~~SSRSH~if~i~i~~~~~~~~~~~~---~----~skL~l--VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~v  297 (359)
T 3nwn_A          227 TMNKNSSRSHCIFTIYLEAHSRTLSEEKY---I----TSKINL--VDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQA  297 (359)
T ss_dssp             HHTCCGGGCEEEEEEEEEEC-------CC---E----EEEEEE--EECCCCC----------------CCSTHHHHHHHH
T ss_pred             cCccccCcceEEEEEEEEeecccccCccc---c----ccccee--eeccccccccccCCchhHHHhhhhhcccHHHHHHH
Confidence            99999999 4444333321   1111110   0    011222  6999999987653     34444555555555544


Q ss_pred             hHH
Q psy9852         225 KRA  227 (241)
Q Consensus       225 ~~~  227 (241)
                      =.+
T Consensus       298 I~a  300 (359)
T 3nwn_A          298 IIA  300 (359)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...

Probab=100.00  E-value=1.1e-49  Score=367.41  Aligned_cols=211  Identities=21%  Similarity=0.285  Sum_probs=158.9

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCC--------CCCCCchHHHHHHHH
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS--------SATLGVIPSAISWLF   71 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~--------~~~~GIipr~~~~LF   71 (241)
                      +|+||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+...        ...+|||||++++||
T Consensus        56 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF  135 (359)
T 1x88_A           56 TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIF  135 (359)
T ss_dssp             EEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHH
T ss_pred             EEeceEEEeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHH
Confidence            499999999 99999999999999999999999999999999999999999998642        124799999999999


Q ss_pred             HHHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC---CCceEEEccC--CcEEecCcEEEeCCCHHHHHHHHH-Hh
Q psy9852          72 RCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS---NGKFFRLCFL--KRFHAEEDEEMPCPVPPPLHSNLL-TL  145 (241)
Q Consensus        72 ~~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~---~~~~l~~~~~--~g~~v~glt~v~V~s~~d~~~ll~-g~  145 (241)
                      +.++..    ++.|.|.|||+|||  ||+|+|||++..   ..+.+++++.  ++++|+|++++.|.+++|++++|+ |.
T Consensus       136 ~~i~~~----~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~  209 (359)
T 1x88_A          136 EKLTDN----GTEFSVKVSLLEIY--NEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGA  209 (359)
T ss_dssp             HHTSSS----SEEEEEEEEEEEEE--TTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHH
T ss_pred             HHHhcc----CceEEEEEEEEEEe--CceeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHH
Confidence            988652    47999999999999  999999998865   3568888874  789999999999999999999999 99


Q ss_pred             cCCCccccCCCCCCch-hhhhceeeeC--CCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHH
Q psy9852         146 SRDSLISNKRNDNSSL-YSNSNERLHD--PGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLK  222 (241)
Q Consensus       146 ~~R~~~~T~~N~~SSr-f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  222 (241)
                      ++|++++|.||+.||| ++++...++.  ....|.. ..+    -|-|.  =+|||||||+.+++     ..++|+.|..
T Consensus       210 ~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~-~~~----~skL~--lVDLAGSEr~~~t~-----~~g~rl~E~~  277 (359)
T 1x88_A          210 AKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE-LVK----IGKLN--LVDLAGSENIGRSG-----AVDKRAREAG  277 (359)
T ss_dssp             HHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCE-EEE----EEEEE--EEECCCCCC--------------------
T ss_pred             hhcccccccCCCCCCCccEEEEEEEEEecccCCCCc-eEE----EEEEE--EEcCCCCCcccccC-----CcccchHHHh
Confidence            9999999999999999 4443333321  1111110 000    01122  26999999987763     3445555555


Q ss_pred             HhhHHHH
Q psy9852         223 REKRALL  229 (241)
Q Consensus       223 ~~~~~~~  229 (241)
                      .||+||+
T Consensus       278 ~INkSL~  284 (359)
T 1x88_A          278 NINQSLL  284 (359)
T ss_dssp             CCCHHHH
T ss_pred             hhhHHHH
Confidence            5555553

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}

Probab=100.00  E-value=1e-48  Score=359.87  Aligned_cols=206  Identities=23%  Similarity=0.352  Sum_probs=152.9

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||+|++     +|||||++++||+.++....
T Consensus        54 ~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~~-----~Giipr~~~~lF~~~~~~~~  127 (349)
T 3t0q_A           54 NFQFDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAG-----DGMIPMTLSHIFKWTANLKE  127 (349)
T ss_dssp             EEEESEEECTTCCHHHHHHH-HHHHHHGGGTTCEEEEEEECSTTSSHHHHHHSTT-----TSHHHHHHHHHHHHHHHHGG
T ss_pred             eeecCEEECCCccHHHHHHH-HHHHHHHHHCCcceeEEEeCCCCCCCceEeCCCC-----CchhhHHHHHHHHHHHHhhh
Confidence            499999999 9999999996 6899999999999999999999999999999974     59999999999999987654


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-----------CCceEEEcc-CCcEEecCcEEEeCCCHHHHHHHHH-Hhc
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYS-----------NGKFFRLCF-LKRFHAEEDEEMPCPVPPPLHSNLL-TLS  146 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-----------~~~~l~~~~-~~g~~v~glt~v~V~s~~d~~~ll~-g~~  146 (241)
                      . ++.|.|.+||+|||  ||+|+|||++..           ..+.+++++ .++++|+|++++.|.+++|+.++|. |.+
T Consensus       128 ~-~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~  204 (349)
T 3t0q_A          128 R-GWNYEMECEYIEIY--NETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASK  204 (349)
T ss_dssp             G-TEEEEEEEEEEEEE--TTEEEETTC---------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC--
T ss_pred             c-CceeEEEEEEEEEE--cchhhccccccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHH
Confidence            3 57999999999999  999999998753           334566665 4679999999999999999999999 999


Q ss_pred             CCCccccCCCCCCch-hhhhceeeeCC-CCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHh
Q psy9852         147 RDSLISNKRNDNSSL-YSNSNERLHDP-GGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKRE  224 (241)
Q Consensus       147 ~R~~~~T~~N~~SSr-f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (241)
                      +|++++|.||+.||| ++++...+... ...+.. ..      |-|..  +|||||||+.+     ++..++|+.|...|
T Consensus       205 ~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~-~~------~kL~l--VDLAGSEr~~~-----t~~~g~rl~E~~~I  270 (349)
T 3t0q_A          205 MRSTAATRSNERSSRSHSVFMVHINGRNLHTGET-SQ------GKLNL--VDLAGSERINS-----SAVTGERLRETQNI  270 (349)
T ss_dssp             ----------CTGGGSEEEEEEEEEEEETTTCCE-EE------EEEEE--EECCCCCCCC---------CCHHHHHHHHH
T ss_pred             hCcccccccccccCCcceEEEEEEEEEecCCCCe-eE------EEEEE--EeCCCCCcccc-----ccCccccchhHHhh
Confidence            999999999999999 44333333211 111111 00      11222  69999988765     45678899999999


Q ss_pred             hHHHH
Q psy9852         225 KRALL  229 (241)
Q Consensus       225 ~~~~~  229 (241)
                      |+||+
T Consensus       271 NkSL~  275 (349)
T 3t0q_A          271 NKSLS  275 (349)
T ss_dssp             HHHHH
T ss_pred             hHhHH
Confidence            99886

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}

Probab=100.00  E-value=8.7e-49  Score=363.11  Aligned_cols=215  Identities=25%  Similarity=0.302  Sum_probs=160.4

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC--------CCCCCCchHHHHHHHH
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ--------SSATLGVIPSAISWLF   71 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~--------~~~~~GIipr~~~~LF   71 (241)
                      .|+||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+..        +..++|||||++++||
T Consensus        68 ~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF  147 (373)
T 2wbe_C           68 KFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLF  147 (373)
T ss_dssp             EEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHH
T ss_pred             EEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHH
Confidence            499999999 9999999999999999999999999999999999999999999864        2347899999999999


Q ss_pred             HHHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-CCceEEEcc--CCcEEecCcEEEeCCCHHHHHHHHH-HhcC
Q psy9852          72 RCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS-NGKFFRLCF--LKRFHAEEDEEMPCPVPPPLHSNLL-TLSR  147 (241)
Q Consensus        72 ~~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-~~~~l~~~~--~~g~~v~glt~v~V~s~~d~~~ll~-g~~~  147 (241)
                      +.++..    .+.|.|.|||+|||  ||+|+|||++.. ..+.+++++  .++++|+|++++.|.+++|++++|+ |.++
T Consensus       148 ~~i~~~----~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~  221 (373)
T 2wbe_C          148 DELRMM----EVEYTMRISYLELY--NEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKER  221 (373)
T ss_dssp             HHHHHC----CSCEEEEEEEEEEE--TTEEEESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHH
T ss_pred             HHHHhc----CceEEEEEEEEEEe--CCeEEECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhh
Confidence            999764    35899999999999  999999998764 345667774  5789999999999999999999999 9999


Q ss_pred             CCccccCCCCCCch-hhhhceeee--CCCCCCccccccccccccccccccccchhhhhhhhcc------ccccccchhhH
Q psy9852         148 DSLISNKRNDNSSL-YSNSNERLH--DPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND------FNQSTWRNDRL  218 (241)
Q Consensus       148 R~~~~T~~N~~SSr-f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~  218 (241)
                      |++++|.||+.||| ++++...++  +....+.. ..+    -|-|.  -+|||||||+.+++      ++++..+|.+|
T Consensus       222 R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~-~~~----~skL~--lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL  294 (373)
T 2wbe_C          222 RKTATTLMNAQSSRSHTVFSIVVHIRENGIEGED-MLK----IGKLN--LVDLAGSENVSKAGNEKGIRVRETVNINQSL  294 (373)
T ss_dssp             HTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCC-EEE----EEEEE--EEECCCC--------------------CHHH
T ss_pred             hccccccCCCCCCCccEEEEEEEEEecCCCCCCc-cee----EEEEE--EEECCCCCccccccCccccchhHHHHHHHHH
Confidence            99999999999999 444444432  11111111 001    01122  26999999987763      33444555555


Q ss_pred             HHHHHhhHHH
Q psy9852         219 EQLKREKRAL  228 (241)
Q Consensus       219 ~~~~~~~~~~  228 (241)
                      ..|++.=.+|
T Consensus       295 ~aLg~vI~aL  304 (373)
T 2wbe_C          295 LTLGRVITAL  304 (373)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5554444433

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*

Probab=100.00  E-value=1.2e-48  Score=363.23  Aligned_cols=211  Identities=19%  Similarity=0.135  Sum_probs=155.0

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC---CCCCCCchHHHHHHHHHHHHh
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ---SSATLGVIPSAISWLFRCISE   76 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~---~~~~~GIipr~~~~LF~~i~~   76 (241)
                      +|+||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||.|+..   ....+|||||++++||..++.
T Consensus       102 ~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~  181 (387)
T 2heh_A          102 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQ  181 (387)
T ss_dssp             EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTS
T ss_pred             EEeeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhc
Confidence            499999999 9999999999999999999999999999999999999999999642   124689999999999999876


Q ss_pred             cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852          77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR  155 (241)
Q Consensus        77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~  155 (241)
                      .... .+.|.|.|||+|||  ||+|+|||++. ..+.+++++.++++|+|++++.|.+++|+.++|+ |.++|++++|.|
T Consensus       182 ~~~~-~~~~~V~vS~~EIY--nE~v~DLL~~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~  257 (387)
T 2heh_A          182 PCYR-KLGLEVYVTFFEIY--NGKLFDLLNKK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFA  257 (387)
T ss_dssp             HHHH-TTTCEEEEEEEEEE--TTEEEETTTTT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC-------
T ss_pred             cccc-CceEEEEEEEEEec--CCeEEECCCCC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcC
Confidence            4322 36899999999999  99999999875 3578899999999999999999999999999999 999999999999


Q ss_pred             CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc------ccccccchhhHHHHHHhhHHH
Q psy9852         156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND------FNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      |+.||| ++++...+....   .        .-|-|..  +|||||||+.+++      ..+...+|.+|..|++.=++|
T Consensus       258 N~~SSRSH~Ifti~v~~~~---~--------~~skL~l--VDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL  324 (387)
T 2heh_A          258 NSNSSRSHACFQIILRAKG---R--------MHGKFSL--VDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL  324 (387)
T ss_dssp             --CGGGSEEEEEEEEESSS---S--------EEEEEEE--EECCCCC---------------CHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccceEEEEEEEEECC---e--------eeeEEEE--EECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHH
Confidence            999999 555555554321   1        0111222  6999999987763      224555666666666554444

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-48  Score=364.22  Aligned_cols=206  Identities=25%  Similarity=0.326  Sum_probs=161.9

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      .|.||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||+|++     +|||||++++||+.++....
T Consensus       109 ~F~FD~VF~~~~~Q~~Vf~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~-----~Giipr~~~~lF~~i~~~~~  182 (403)
T 4etp_A          109 EFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINKLKT  182 (403)
T ss_dssp             EEEESEEECTTCCHHHHHHH-HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTT-----TSHHHHHHHHHHHHHHHHHT
T ss_pred             EEEcCEEECCCCchHHHHHH-HHHHHHHHhCCcceEEEEECCCCCCCceEeCCCC-----CccchhHHHHHHHHHHhhhc
Confidence            499999999 9999999986 6799999999999999999999999999999864     59999999999999987654


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC---------CCceEEEcc-CCcEEecCcEEEeCCCHHHHHHHHH-HhcCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYS---------NGKFFRLCF-LKRFHAEEDEEMPCPVPPPLHSNLL-TLSRD  148 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~---------~~~~l~~~~-~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R  148 (241)
                       .++.|.|.|||+|||  ||+|+|||++..         ..+.+++++ .++++|+|++++.|.+++++..+|. |.++|
T Consensus       183 -~~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R  259 (403)
T 4etp_A          183 -KGWDYKVNAEFIEIY--NENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLR  259 (403)
T ss_dssp             -TTEEEEEEEEEEEEE--TTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C
T ss_pred             -cCceEEEEEEEEEEe--cceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhc
Confidence             368999999999999  999999998764         223556665 5678999999999999999999999 99999


Q ss_pred             CccccCCCCCCch-hhhhceeeeCCC-CCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhH
Q psy9852         149 SLISNKRNDNSSL-YSNSNERLHDPG-GTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKR  226 (241)
Q Consensus       149 ~~~~T~~N~~SSr-f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (241)
                      ++++|.||+.||| ++++...+.... ..+.. ...      -|..  +|||||||+.+     ++..+.|+.|...||+
T Consensus       260 ~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~-~~~------kL~l--VDLAGSEr~~~-----t~~~g~rl~E~~~INk  325 (403)
T 4etp_A          260 STASTASNEHSSRSHSIFIIHLSGSNAKTGAH-SYG------TLNL--VDLAGSERINV-----SQVVGDRLRETQNINK  325 (403)
T ss_dssp             ----CHHHHHHHTSEEEEEEEEEEEETTTCCE-EEE------EEEE--EECCCCCCCCC-----SSCCHHHHHHHHHHHH
T ss_pred             ccccccCCcccCCcccEEEEEEEEeecCCCCe-eEE------EEEE--EECCCCccccc-----cCChhHHHHHHHHHHH
Confidence            9999999999999 444433332111 11111 111      1222  69999988755     4567899999999999


Q ss_pred             HHH
Q psy9852         227 ALL  229 (241)
Q Consensus       227 ~~~  229 (241)
                      ||+
T Consensus       326 SL~  328 (403)
T 4etp_A          326 SLS  328 (403)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            986

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=100.00  E-value=1.9e-48  Score=364.14  Aligned_cols=211  Identities=19%  Similarity=0.163  Sum_probs=161.4

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC---CCCCCCchHHHHHHHHHHHHh
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ---SSATLGVIPSAISWLFRCISE   76 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~---~~~~~GIipr~~~~LF~~i~~   76 (241)
                      +|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+..   ....+|||||++++||..++.
T Consensus       122 ~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~  201 (410)
T 1v8k_A          122 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQ  201 (410)
T ss_dssp             EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTS
T ss_pred             EEeeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhh
Confidence            499999999 9999999999999999999999999999999999999999999642   124689999999999999875


Q ss_pred             cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852          77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR  155 (241)
Q Consensus        77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~  155 (241)
                      .... ++.|.|.|||+|||  ||+|+|||++. ..+.+++++.++++|+|++++.|.|++|+.++|. |.++|++++|.|
T Consensus       202 ~~~~-~~~~~V~vS~lEIY--nE~i~DLL~~~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~  277 (410)
T 1v8k_A          202 PRYR-NLNLEVYVTFFEIY--NGKVFDLLNKK-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFA  277 (410)
T ss_dssp             HHHH-TTCCEEEEEEEEEE--TTEEEETTTTT-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC------
T ss_pred             hccc-CccEEEEEEEEEee--CCEEEECCCCC-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccC
Confidence            4322 46899999999999  99999999875 4578899999999999999999999999999999 999999999999


Q ss_pred             CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc------ccccccchhhHHHHHHhhHHH
Q psy9852         156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND------FNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      |+.||| ++++...+...+   ..        -|-|..  +|||||||+.+++      ..+...+|.+|..|++.=.+|
T Consensus       278 N~~SSRSH~Ifti~v~~~~---~~--------~skL~l--VDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL  344 (410)
T 1v8k_A          278 NSNSSRSHACFQILLRTKG---RL--------HGKFSL--VDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL  344 (410)
T ss_dssp             --CCCSSEEEEEEEEESSS---SE--------EEEEEE--EECCCCCC------------TTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCceEEEEEEEEeCC---cc--------eeEEEE--EECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHH
Confidence            999999 555555554321   11        111222  6999999987763      224455666666666554443

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=100.00  E-value=2e-48  Score=364.63  Aligned_cols=212  Identities=26%  Similarity=0.364  Sum_probs=160.4

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|+||+||+ +++|++||+ .+.|+|+++++|||+||||||||||||||||+|.+.   ++|||||++++||+.++....
T Consensus       107 ~F~FD~VF~~~~~Q~~Vf~-~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~---~~Giipr~~~~lF~~i~~~~~  182 (412)
T 3u06_A          107 IFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPE---SVGVIPRTVDLLFDSIRGYRN  182 (412)
T ss_dssp             EEECSEEECTTCCHHHHHT-TTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETT---EECHHHHHHHHHHHHHHHHGG
T ss_pred             EEeeCeEcCCCCCHHHHHH-HHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCC---CCccHHHHHHHHHHhhhhhcc
Confidence            499999999 999999998 578999999999999999999999999999999876   589999999999999987654


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEE--EccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFR--LCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRN  156 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~--~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N  156 (241)
                      . ++.|.|.|||+|||  ||+|+|||++..+.+.++  +++.++++|+|++++.|.+++++..+|. |.++|++++|.||
T Consensus       183 ~-~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N  259 (412)
T 3u06_A          183 L-GWEYEIKATFLEIY--NEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGN  259 (412)
T ss_dssp             G-TEEEEEEEEEEEEE--TTEEEETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CH
T ss_pred             c-CceEEEEEEEEEEe--CCeeEEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCC
Confidence            3 57999999999999  999999998887766665  5678899999999999999999999999 9999999999999


Q ss_pred             CCCch-hhhhceeeeCC-CCCCccccccccccccccccccccchhhhhhhhc-cccccccchhhHHHHHHhhHHH
Q psy9852         157 DNSSL-YSNSNERLHDP-GGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKN-DFNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       157 ~~SSr-f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      +.||| ++++...+... ...+.. ..      |-|..  +||||||++.+. .+.++..+|.+|..|++.=.+|
T Consensus       260 ~~SSRSH~if~i~v~~~~~~~~~~-~~------~kL~l--VDLAGSEr~~~~~rl~E~~~INkSL~aLg~vI~aL  325 (412)
T 3u06_A          260 ERSSRSHAVTKLELIGRHAEKQEI-SV------GSINL--VDLAGSESPKTSTRMTETKNINRSLSELTNVILAL  325 (412)
T ss_dssp             HHHTTCEEEEEEEEEEEETTTTEE-EE------EEEEE--EECCCCCC----------CTTTHHHHHHHHHHHHH
T ss_pred             CCCcCceEEEEEEEEEEeCCCCCE-EE------EEEEE--EECCCCCcCCccchhHhHHHHhHHHHHHHHHHHHH
Confidence            99999 44443333211 111111 00      11222  699999987432 3445556666666665554444

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9

Probab=100.00  E-value=7.3e-48  Score=355.41  Aligned_cols=209  Identities=20%  Similarity=0.181  Sum_probs=163.2

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhc-CCCEEEEcccccCCCcceeeccCCC--CCCCCCchHHHHHHHHHHHHh
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVIS-GSDGCLFCFGHARLGKSYTMVGSPQ--SSATLGVIPSAISWLFRCISE   76 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~-G~n~ti~aYGqtgSGKTyTm~G~~~--~~~~~GIipr~~~~LF~~i~~   76 (241)
                      +|.||+||+ +++|++||+.++.|+|+++++ ||||||||||||||||||||+|+..  ....+|||||++++||+.++.
T Consensus        51 ~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~  130 (360)
T 1ry6_A           51 EFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNI  130 (360)
T ss_dssp             EEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHH
T ss_pred             eEEeeeEecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHh
Confidence            499999999 999999999999999999996 9999999999999999999999863  134799999999999999987


Q ss_pred             cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852          77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR  155 (241)
Q Consensus        77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~  155 (241)
                      ...  .+.+.|.+||+|||  ||+|+|||++.. ...+++++.++++|+|++++.|.+++|+.++|. |.++|++++|.|
T Consensus       131 ~~~--~~~~~v~vS~~EIY--nE~v~DLL~~~~-~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~  205 (360)
T 1ry6_A          131 YDK--DNTKGIFISFYEIY--CGKLYDLLQKRK-MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQ  205 (360)
T ss_dssp             HCS--SSCEEEEEEEEEEE--TTEEEESCCC------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             hcc--CCceEEEEEEEEee--CCeeEEcccCCc-cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccc
Confidence            543  35899999999999  999999997764 456788999999999999999999999999999 999999999999


Q ss_pred             CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      |+.||| ++++...+......  .   .    -|-|..  +|||||||+.+++-.    ..+|+.|...||+||+
T Consensus       206 N~~SSRSH~if~i~v~~~~~~--~---~----~skL~l--VDLAGSEr~~~t~~~----~~~~~~E~~~INkSL~  265 (360)
T 1ry6_A          206 NDESSRSHAILNIDLKDINKN--T---S----LGKIAF--IDLAGSERGADTVSQ----NKQTQTDGANINRSLL  265 (360)
T ss_dssp             TTGGGGSEEEEEEEEEETTTT--E---E----EEEEEE--EECCCTTGGGGGGCS----SHHHHHHHHHHHHHHH
T ss_pred             cCCCccceEEEEEEEEeccCC--c---c----eeEEEE--EECCCCccccccccc----cccchHHHHHHHHHHH
Confidence            999999 55554555322110  0   0    011222  699999998887421    1245666666777665

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=100.00  E-value=3.7e-48  Score=355.45  Aligned_cols=213  Identities=21%  Similarity=0.264  Sum_probs=153.7

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC---CCCCCCchHHHHHHHHHHHHh
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ---SSATLGVIPSAISWLFRCISE   76 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~---~~~~~GIipr~~~~LF~~i~~   76 (241)
                      +|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||.|...   .+.++|||||++++||+.++.
T Consensus        62 ~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~  141 (344)
T 3dc4_A           62 EFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTA  141 (344)
T ss_dssp             EEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHH
T ss_pred             EEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHh
Confidence            499999999 9999999999999999999999999999999999999999998753   135789999999999999988


Q ss_pred             cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852          77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR  155 (241)
Q Consensus        77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~  155 (241)
                      ........|.|.+||+|||  ||+|+|||++......+      ...+.++++++|.+++|+.++|+ |.++|++++|.|
T Consensus       142 ~~~~~~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~------~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~  213 (344)
T 3dc4_A          142 RQENNKDAIQVYASFIEIY--NEKPFDLLGSTPHMPMV------AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNM  213 (344)
T ss_dssp             SSSSCSSCCEEEEEEEEEE--SSCEEETTSSCTTSBCC------SSTTTCSCCEECSSHHHHHHHHHHHHHTCC------
T ss_pred             hhhccccceEEEEEEEEEe--CCeeEEccCCCCCCccc------cccccCceecccCCHHHHHHHHHHHHhhcccccccC
Confidence            7665556899999999999  99999999877643322      22346899999999999999999 999999999999


Q ss_pred             CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHHHH
Q psy9852         156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      |+.||| ++++...+....            .-|.|..  +|||||||+.+++     +.++..+|.+|..|++.=.+  
T Consensus       214 N~~SSRSH~Ifti~v~~~~------------~~skl~l--VDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~a--  277 (344)
T 3dc4_A          214 NSNSSRSHAIVTIHVKSKT------------HHSRMNI--VDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMS--  277 (344)
T ss_dssp             ----CCEEEEEEEEEECSS------------CEEEEEE--EECCCCCCC-------------CCSCCHHHHHHHHHHH--
T ss_pred             CCCCCCceEEEEEEEEecC------------cEEEEEE--EECCCCccccccccccchhHHHHHHhHhHHHHHHHHHH--
Confidence            999999 665555554211            0112333  7999999887763     33444455555555443333  


Q ss_pred             HHhhhccccc
Q psy9852         230 IELAATKTHL  239 (241)
Q Consensus       230 ~~~~~~~~~~  239 (241)
                        |+..+.|+
T Consensus       278 --L~~~~~hi  285 (344)
T 3dc4_A          278 --MAAGHTVI  285 (344)
T ss_dssp             --HHTTCSSC
T ss_pred             --HhccCCcC
Confidence              34455554

>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}

Probab=100.00  E-value=7.4e-46  Score=367.58  Aligned_cols=206  Identities=26%  Similarity=0.333  Sum_probs=151.8

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|+||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||.|+.     +|||||++++||+.++....
T Consensus       431 ~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~-----~Giipr~~~~lf~~~~~~~~  504 (715)
T 4h1g_A          431 RFLFDKIFEREQSNDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPT-----NGMIPLSLKKIFNDIEELKE  504 (715)
T ss_dssp             EEECSEEECSSCCHHHHGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTT-----TSHHHHHHHHHHHHHHHHGG
T ss_pred             EEEeceEeCCCCCHHHHHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCCC-----CCcHHHHHHHHHHHHHHhhc
Confidence            499999999 9999999985 6799999999999999999999999999999854     69999999999999987655


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC---CCceEEEcc-CCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYS---NGKFFRLCF-LKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNK  154 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~---~~~~l~~~~-~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~  154 (241)
                      . +..|.|+|||+|||  ||+|+|||++..   ..+.++++. .++++|+|++++.|.|++++.++|. |.++|++++|.
T Consensus       505 ~-~~~~~v~~s~~Eiy--ne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~  581 (715)
T 4h1g_A          505 K-GWSYTVRGKFIEIY--NEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATK  581 (715)
T ss_dssp             G-TEEEEEEEEEEEEE--TTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC-------
T ss_pred             C-CceEEEEEEEEEEE--CCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCccccc
Confidence            3 57999999999999  999999998753   234555544 5569999999999999999999999 99999999999


Q ss_pred             CCCCCch-hhhhceeeeCC-CCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852         155 RNDNSSL-YSNSNERLHDP-GGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL  229 (241)
Q Consensus       155 ~N~~SSr-f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (241)
                      +|++||| ++++...+... ...+.. ..      |.|.  -+|||||||+.++     +..++|+.|...||+||+
T Consensus       582 ~n~~ssRSH~i~~i~~~~~~~~~~~~-~~------~~l~--lvDLAGsEr~~~~-----~~~g~~~~E~~~IN~sL~  644 (715)
T 4h1g_A          582 SNDHSSRSHSIFIIDLQGYNSLTKES-SY------GTLN--LIDLAGSERLNNS-----RAEGDRLKETQAINKSLS  644 (715)
T ss_dssp             ---CGGGSEEEEEEEEEEEETTTCCE-EE------EEEE--EEECCCCCC--------------CHHHHHHHHHHHH
T ss_pred             ccCccccccEEEEEEEEEEecCCCCE-eE------EEEE--EEeCCCccccccc-----CChhHHHHHHHHHHHHHH
Confidence            9999999 44443333211 111110 00      1122  2699999988765     467788888888888886

>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.6e-22  Score=178.15  Aligned_cols=120  Identities=12%  Similarity=0.137  Sum_probs=104.7

Q ss_pred             CeecceecC-CCChH--HHHHHHHHHHHHHHhc-CCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHh
Q psy9852           1 MFAFDAIFS-DEPQS--EICTSALSDVIQAVIS-GSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISE   76 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe--~Vy~~~v~plV~~vl~-G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~   76 (241)
                      +|.||+||+ .+.|+  +||++ +.++|+++++ |||+|||||||||+|||                ||++..+|...+.
T Consensus        58 ~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~GyNvcIfSyGQTGsGKT----------------~ral~q~f~~~~~  120 (298)
T 2o0a_A           58 VYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKKNFNLISLSTTPHGSL----------------RESLIKFLAEKDT  120 (298)
T ss_dssp             EEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTCCEEEEEECSSCCHHH----------------HHHHHHHHHSTTS
T ss_pred             eEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCCceEEEEECCCCCCcc----------------HHHHHHHHHHhhh
Confidence            599999999 99999  99985 8999999999 99999999999999999                9999999987644


Q ss_pred             -cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC--CCceEEEccCCcEEecCcEEEeCCC-HHHHHHHH
Q psy9852          77 -QKHKTGARFSVRASAIEISSSSQHVKDLLSTYS--NGKFFRLCFLKRFHAEEDEEMPCPV-PPPLHSNL  142 (241)
Q Consensus        77 -~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~--~~~~l~~~~~~g~~v~glt~v~V~s-~~d~~~ll  142 (241)
                       ..    +.|.+.+||+|||. ||.++|||....  ....++.+.++..++.|++.++|.+ ++|+..++
T Consensus       121 ~~~----~~Y~~tlq~veLy~-Ne~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~  185 (298)
T 2o0a_A          121 IYQ----KQYVITLQFVFLSD-DEFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNF  185 (298)
T ss_dssp             HHH----HHEEEEEEEEEEEC-C-CEEETTSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTT
T ss_pred             hcc----cceEEEEEEEEEec-CCchHHhcCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHh
Confidence             22    69999999999997 899999996332  2447788899999999999999999 99999998

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.52  E-value=0.0075  Score=48.25  Aligned_cols=49  Identities=14%  Similarity=0.158  Sum_probs=33.4

Q ss_pred             eecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852           2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus         2 F~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      .+||.... +..|+++++ .+..+++++-......++-+|++|+|||+.+.
T Consensus         7 ~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~   56 (180)
T 3ec2_A            7 ANLDTYHPKNVSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV   56 (180)
T ss_dssp             CCSSSCCCCSHHHHHHHH-HHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred             CccccccCCCHHHHHHHH-HHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence            35666555 556777876 45666665433334567889999999999883

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=93.18  E-value=0.027  Score=45.62  Aligned_cols=48  Identities=15%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             ecceecC-CCChHHHHHHHHHHHHHHHhcCCC-EEEEcccccCCCcceeec
Q psy9852           3 AFDAIFS-DEPQSEICTSALSDVIQAVISGSD-GCLFCFGHARLGKSYTMV   51 (241)
Q Consensus         3 ~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n-~ti~aYGqtgSGKTyTm~   51 (241)
                      +||.+.. +..+..+++ .+...+...-.+.. ..++-||++|+|||+.+.
T Consensus        23 ~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~   72 (202)
T 2w58_A           23 SLSDVDLNDDGRIKAIR-FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA   72 (202)
T ss_dssp             CTTSSCCSSHHHHHHHH-HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred             CHhhccCCChhHHHHHH-HHHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence            4555544 445666766 34445554333322 678899999999999873

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=91.67  E-value=0.054  Score=47.81  Aligned_cols=48  Identities=23%  Similarity=0.403  Sum_probs=30.0

Q ss_pred             ecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852           3 AFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus         3 ~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      +||.+.. ...+..+++ .+...++..-.+....++-||++|+||||.+.
T Consensus       122 tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~  170 (308)
T 2qgz_A          122 HLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA  170 (308)
T ss_dssp             CGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred             CHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence            3444333 334555665 44455555433335678899999999999884

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=89.94  E-value=0.14  Score=39.59  Aligned_cols=30  Identities=17%  Similarity=0.267  Sum_probs=22.7

Q ss_pred             HHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852          21 LSDVIQAVISGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      +..+++.+..+....++-||++|+|||+.+
T Consensus        31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~   60 (195)
T 1jbk_A           31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV   60 (195)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence            444555555566677899999999999987

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=89.15  E-value=0.16  Score=39.43  Aligned_cols=30  Identities=17%  Similarity=0.280  Sum_probs=22.6

Q ss_pred             HHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852          21 LSDVIQAVISGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      +..+++.+..+....++-+|++|+|||+.+
T Consensus        31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la   60 (187)
T 2p65_A           31 IRRAIQILSRRTKNNPILLGDPGVGKTAIV   60 (187)
T ss_dssp             HHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred             HHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence            344555555566678899999999999876

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=87.76  E-value=0.21  Score=44.59  Aligned_cols=23  Identities=9%  Similarity=0.079  Sum_probs=19.8

Q ss_pred             HhcCCCEEEEcccccCCCcceee
Q psy9852          28 VISGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        28 vl~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      +-.|...+++.||++|+|||.++
T Consensus        40 i~~~~~~~lli~GpPGTGKT~~v   62 (318)
T 3te6_A           40 LMSSQNKLFYITNADDSTKFQLV   62 (318)
T ss_dssp             HHTTCCCEEEEECCCSHHHHHHH
T ss_pred             hcCCCCCeEEEECCCCCCHHHHH
Confidence            34677889999999999999887

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.21  E-value=0.44  Score=44.32  Aligned_cols=75  Identities=23%  Similarity=0.307  Sum_probs=46.1

Q ss_pred             cceecC-CCChHHHHHHHHHHHHH-HHhc--CCC--EEEEcccccCCCcceee--------------ccCCCCCCCCCch
Q psy9852           4 FDAIFS-DEPQSEICTSALSDVIQ-AVIS--GSD--GCLFCFGHARLGKSYTM--------------VGSPQSSATLGVI   63 (241)
Q Consensus         4 FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~--G~n--~ti~aYGqtgSGKTyTm--------------~G~~~~~~~~GIi   63 (241)
                      ||-|-+ +.--+++.+.+..|+.. ..+.  |..  -.|+-||+.|+|||...              -|+.--....|--
T Consensus       171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~  250 (428)
T 4b4t_K          171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEG  250 (428)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchh
Confidence            444444 33334455545555542 2333  322  34899999999999643              2333223356888


Q ss_pred             HHHHHHHHHHHHhcc
Q psy9852          64 PSAISWLFRCISEQK   78 (241)
Q Consensus        64 pr~~~~LF~~i~~~~   78 (241)
                      .+.++.+|..+....
T Consensus       251 e~~ir~lF~~A~~~a  265 (428)
T 4b4t_K          251 PRMVRDVFRLARENA  265 (428)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999887653

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=86.94  E-value=0.25  Score=42.88  Aligned_cols=72  Identities=15%  Similarity=0.124  Sum_probs=40.3

Q ss_pred             ecceecC-CCChHHHHHHHHHHHHHHHhcCCC----EEEEcccccCCCcceeec------cCCC--------CCCCCCch
Q psy9852           3 AFDAIFS-DEPQSEICTSALSDVIQAVISGSD----GCLFCFGHARLGKSYTMV------GSPQ--------SSATLGVI   63 (241)
Q Consensus         3 ~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n----~ti~aYGqtgSGKTyTm~------G~~~--------~~~~~GIi   63 (241)
                      +||..++ .---+.+.+..+..++...+.-.+    ..++-||++|+|||+...      |.+-        .....|-.
T Consensus         1 ~~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~   80 (293)
T 3t15_A            1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEP   80 (293)
T ss_dssp             CCCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HH
T ss_pred             CcccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchh
Confidence            3677776 333344445555566655543222    357889999999998764      2110        01134556


Q ss_pred             HHHHHHHHHHH
Q psy9852          64 PSAISWLFRCI   74 (241)
Q Consensus        64 pr~~~~LF~~i   74 (241)
                      +..+..+|+..
T Consensus        81 ~~~i~~~f~~a   91 (293)
T 3t15_A           81 AKLIRQRYREA   91 (293)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66677777766

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.92  E-value=0.64  Score=43.32  Aligned_cols=76  Identities=12%  Similarity=0.151  Sum_probs=48.1

Q ss_pred             ecceecC-CCChHHHHHHHHHHHHH-HHhc--CC--CEEEEcccccCCCcceeec--------------cCCCCCCCCCc
Q psy9852           3 AFDAIFS-DEPQSEICTSALSDVIQ-AVIS--GS--DGCLFCFGHARLGKSYTMV--------------GSPQSSATLGV   62 (241)
Q Consensus         3 ~FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~--G~--n~ti~aYGqtgSGKTyTm~--------------G~~~~~~~~GI   62 (241)
                      +||.|-+ +.--+++.+.++.|+.. ..+.  |.  --.|+-||+.|+|||....              |+.--....|-
T Consensus       179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGe  258 (434)
T 4b4t_M          179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGE  258 (434)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSH
T ss_pred             ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccch
Confidence            3555555 44445566666666652 2333  32  3468999999999996542              32222234677


Q ss_pred             hHHHHHHHHHHHHhcc
Q psy9852          63 IPSAISWLFRCISEQK   78 (241)
Q Consensus        63 ipr~~~~LF~~i~~~~   78 (241)
                      -.+.++.+|.......
T Consensus       259 se~~ir~lF~~A~~~a  274 (434)
T 4b4t_M          259 GAKLVRDAFALAKEKA  274 (434)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            8899999999887754

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=86.15  E-value=0.63  Score=48.00  Aligned_cols=37  Identities=19%  Similarity=0.122  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHhcCCCccccCCCCCCchhhhhceeeeCCCC
Q psy9852         135 PPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGG  174 (241)
Q Consensus       135 ~~d~~~ll~g~~~R~~~~T~~N~~SSrf~~~~~~~~~~~~  174 (241)
                      +-+..-+|++--+   +.|.+|++||||.-..+.-.++.|
T Consensus       182 Il~snpiLEAFGN---AKT~rNdNSSRFGK~iel~F~~~G  218 (1052)
T 4anj_A          182 IVEANPLLEAFGN---AKTVRNNNSSRFGKFVEIHFNEKS  218 (1052)
T ss_dssp             HHHTHHHHHHHHE---ECCSSCTTEESSEEEEEEEECTTS
T ss_pred             HHHHHHHHHhccC---CCCCCCCCcCCceeEEEEEECCCC
Confidence            3455667772223   679999999999888777666654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=85.48  E-value=0.31  Score=42.36  Aligned_cols=48  Identities=10%  Similarity=0.242  Sum_probs=28.4

Q ss_pred             eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852           2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus         2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      |+||.+.....+...+.. +..+++.-- .....++-||++|+|||+.+.
T Consensus         8 ~~f~~fv~g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~   55 (324)
T 1l8q_A            8 YTLENFIVGEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ   55 (324)
T ss_dssp             CCSSSCCCCTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred             CCcccCCCCCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence            567766542234445543 444443321 123468899999999999873

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=84.58  E-value=0.31  Score=41.09  Aligned_cols=43  Identities=14%  Similarity=0.149  Sum_probs=21.4

Q ss_pred             eecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852           2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus         2 F~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      |+||.+.+ +..-..+.+     .+..+.. .+..|+-||++|+|||+..
T Consensus         3 ~~f~~~ig~~~~~~~~~~-----~~~~~~~-~~~~vll~G~~GtGKt~la   46 (265)
T 2bjv_A            3 EYKDNLLGEANSFLEVLE-----QVSHLAP-LDKPVLIIGERGTGKELIA   46 (265)
T ss_dssp             -------CCCHHHHHHHH-----HHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred             cccccceeCCHHHHHHHH-----HHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence            56777766 433333332     2223222 3456888999999999876

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=84.55  E-value=0.38  Score=40.42  Aligned_cols=48  Identities=13%  Similarity=0.169  Sum_probs=28.8

Q ss_pred             eecceecC-CCChHHHHHHHHHHHHH-HHhc----CCCEEEEcccccCCCcceee
Q psy9852           2 FAFDAIFS-DEPQSEICTSALSDVIQ-AVIS----GSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus         2 F~FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~----G~n~ti~aYGqtgSGKTyTm   50 (241)
                      +.||.+.+ +...+.+.+ .+..+-. ..+.    .....++-||++|+|||+.+
T Consensus         8 ~~~~~i~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la   61 (268)
T 2r62_A            8 VRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA   61 (268)
T ss_dssp             CCSTTSSSCTTTHHHHHH-HHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred             CCHHHhCCcHHHHHHHHH-HHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence            46777777 655555544 3332210 1111    22334889999999999886

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=83.48  E-value=0.35  Score=42.00  Aligned_cols=18  Identities=17%  Similarity=0.337  Sum_probs=15.3

Q ss_pred             CEEEEcccccCCCcceee
Q psy9852          33 DGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        33 n~ti~aYGqtgSGKTyTm   50 (241)
                      ...|+-||++|+|||+.+
T Consensus        49 ~~~vLL~Gp~GtGKT~la   66 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLA   66 (301)
T ss_dssp             CSEEEEECSSSSSHHHHH
T ss_pred             CceEEEECCCCcCHHHHH
Confidence            456899999999999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=82.79  E-value=0.51  Score=37.29  Aligned_cols=21  Identities=24%  Similarity=0.156  Sum_probs=16.5

Q ss_pred             cCCCEEEEcccccCCCcceee
Q psy9852          30 SGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        30 ~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      .+....++-||++|+|||+.+
T Consensus        35 ~~~~~~~ll~G~~G~GKT~l~   55 (226)
T 2chg_A           35 RKNIPHLLFSGPPGTGKTATA   55 (226)
T ss_dssp             TTCCCCEEEECSTTSSHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHH
Confidence            343335899999999999876

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=82.76  E-value=0.36  Score=40.88  Aligned_cols=20  Identities=15%  Similarity=0.270  Sum_probs=16.1

Q ss_pred             CCEEEEcccccCCCcceeec
Q psy9852          32 SDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus        32 ~n~ti~aYGqtgSGKTyTm~   51 (241)
                      ....++-||++|+|||+.+.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~   69 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAK   69 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHH
Confidence            34568999999999998764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.72  E-value=0.78  Score=42.42  Aligned_cols=75  Identities=17%  Similarity=0.196  Sum_probs=47.7

Q ss_pred             cceecC-CCChHHHHHHHHHHHHH-HHhc--CC--CEEEEcccccCCCcceee--------------ccCCCCCCCCCch
Q psy9852           4 FDAIFS-DEPQSEICTSALSDVIQ-AVIS--GS--DGCLFCFGHARLGKSYTM--------------VGSPQSSATLGVI   63 (241)
Q Consensus         4 FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~--G~--n~ti~aYGqtgSGKTyTm--------------~G~~~~~~~~GIi   63 (241)
                      ||-|-+ +.--+++-+.+..|+.. ..+.  |.  --.|+-||+.|+|||...              -|+.--....|--
T Consensus       147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGes  226 (405)
T 4b4t_J          147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEG  226 (405)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchH
Confidence            444545 44445566656666652 2444  33  245899999999999654              2332222346778


Q ss_pred             HHHHHHHHHHHHhcc
Q psy9852          64 PSAISWLFRCISEQK   78 (241)
Q Consensus        64 pr~~~~LF~~i~~~~   78 (241)
                      .+.++.+|.......
T Consensus       227 e~~vr~lF~~Ar~~a  241 (405)
T 4b4t_J          227 SRMVRELFVMAREHA  241 (405)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            899999999988754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=82.48  E-value=0.28  Score=42.83  Aligned_cols=40  Identities=10%  Similarity=0.141  Sum_probs=25.1

Q ss_pred             CCChHHHHHHHHHHHHHHHh-cCCCEEEEcccccCCCcceee
Q psy9852          10 DEPQSEICTSALSDVIQAVI-SGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        10 ~a~Qe~Vy~~~v~plV~~vl-~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      -..+++..+.. ...+..++ .+...+++-||++|+|||+.+
T Consensus        21 ~~gr~~~~~~l-~~~l~~~~~~~~~~~vll~G~~G~GKT~l~   61 (387)
T 2v1u_A           21 LPHREAELRRL-AEVLAPALRGEKPSNALLYGLTGTGKTAVA   61 (387)
T ss_dssp             CTTCHHHHHHH-HHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred             CCCHHHHHHHH-HHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence            34455555432 33333333 344567899999999999887

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=82.42  E-value=0.93  Score=38.25  Aligned_cols=27  Identities=15%  Similarity=0.089  Sum_probs=20.6

Q ss_pred             HHHHHh---cCCCEEEEcccccCCCcceee
Q psy9852          24 VIQAVI---SGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        24 lV~~vl---~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      ++..+.   ......++-||++|+|||+..
T Consensus        52 l~~~l~~~~~~~~~~vLl~G~~GtGKT~la   81 (272)
T 1d2n_A           52 LVQQTKNSDRTPLVSVLLEGPPHSGKTALA   81 (272)
T ss_dssp             HHHHHHHCSSCSEEEEEEECSTTSSHHHHH
T ss_pred             HHHHHhccCCCCCeEEEEECCCCCcHHHHH
Confidence            444443   556678999999999999876

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=81.89  E-value=0.64  Score=37.55  Aligned_cols=20  Identities=10%  Similarity=0.386  Sum_probs=16.9

Q ss_pred             CCCEEEEcccccCCCcceee
Q psy9852          31 GSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        31 G~n~ti~aYGqtgSGKTyTm   50 (241)
                      +....++-||++|+|||+.+
T Consensus        50 ~~~~~~ll~G~~G~GKT~la   69 (242)
T 3bos_A           50 DGVQAIYLWGPVKSGRTHLI   69 (242)
T ss_dssp             CSCSEEEEECSTTSSHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHH
Confidence            34567899999999999887

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=81.07  E-value=0.51  Score=40.97  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=17.4

Q ss_pred             HhcCCCEEEEcccccCCCcceee
Q psy9852          28 VISGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        28 vl~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      ++.+....++-||++|+|||+..
T Consensus        40 ~~~~~~~~vLl~G~~GtGKT~la   62 (350)
T 1g8p_A           40 AVDPGIGGVLVFGDRGTGKSTAV   62 (350)
T ss_dssp             HHCGGGCCEEEECCGGGCTTHHH
T ss_pred             hhCCCCceEEEECCCCccHHHHH
Confidence            33334445999999999999876

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.52  E-value=1.4  Score=40.98  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=47.0

Q ss_pred             ecceecC-CCChHHHHHHHHHHHHH-HHhc--CC--CEEEEcccccCCCcceee--------------ccCCCCCCCCCc
Q psy9852           3 AFDAIFS-DEPQSEICTSALSDVIQ-AVIS--GS--DGCLFCFGHARLGKSYTM--------------VGSPQSSATLGV   62 (241)
Q Consensus         3 ~FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~--G~--n~ti~aYGqtgSGKTyTm--------------~G~~~~~~~~GI   62 (241)
                      +||.|-+ +.--+++-+.+..|+.. ..+.  |.  --.|+-||+.|+|||...              -|+.--....|-
T Consensus       179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Ge  258 (437)
T 4b4t_L          179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGE  258 (437)
T ss_dssp             CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSH
T ss_pred             ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchH
Confidence            3445545 33344555555566642 2444  32  246899999999999653              233222234677


Q ss_pred             hHHHHHHHHHHHHhcc
Q psy9852          63 IPSAISWLFRCISEQK   78 (241)
Q Consensus        63 ipr~~~~LF~~i~~~~   78 (241)
                      -.+.+..+|.......
T Consensus       259 se~~ir~~F~~A~~~~  274 (437)
T 4b4t_L          259 SARIIREMFAYAKEHE  274 (437)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            7889999999887654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=80.50  E-value=0.22  Score=41.73  Aligned_cols=16  Identities=19%  Similarity=0.295  Sum_probs=14.3

Q ss_pred             EEcccccCCCcceeec
Q psy9852          36 LFCFGHARLGKSYTMV   51 (241)
Q Consensus        36 i~aYGqtgSGKTyTm~   51 (241)
                      ++-||++|+|||+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~   67 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLAR   67 (254)
T ss_dssp             EEEECCTTSSHHHHHH
T ss_pred             EEEECCCCCCHHHHHH
Confidence            8899999999998764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=80.03  E-value=1.1  Score=39.19  Aligned_cols=39  Identities=13%  Similarity=0.153  Sum_probs=25.8

Q ss_pred             CChHHHHHHHHHHHHHHHhcCCC-E--EEEcccccCCCcceee
Q psy9852          11 EPQSEICTSALSDVIQAVISGSD-G--CLFCFGHARLGKSYTM   50 (241)
Q Consensus        11 a~Qe~Vy~~~v~plV~~vl~G~n-~--ti~aYGqtgSGKTyTm   50 (241)
                      ..+++..+. +...+...+.|.. .  +++-+|++|+|||..+
T Consensus        20 ~gr~~~~~~-l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~   61 (389)
T 1fnn_A           20 PHREQQLQQ-LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL   61 (389)
T ss_dssp             TTCHHHHHH-HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred             CChHHHHHH-HHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence            445555553 3445555555533 4  6889999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1bg2a_	323	c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId	6e-11
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	1e-08
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	7e-06
d1f9va_	342	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	3e-05
d1sdma_	364	c.37.1.9 (A:) Kinesin heavy chain-like protein {Po	3e-04

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 6e-11
 Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 5/133 (3%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
           +AFD +F S   Q ++       +++ V+ G +G +F +G    GK++TM G       +
Sbjct: 44  YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 103

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLK 120
           G+IP  +  +F  I          F ++ S  EI      ++DLL              +
Sbjct: 104 GIIPRIVQDIFNYIYSMDENL--EFHIKVSYFEI--YLDKIRDLLDVSKTNLSVHEDKNR 159

Query: 121 RFHAEEDEEMPCP 133
             + +   E    
Sbjct: 160 VPYVKGCTERFVC 172

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 1e-08
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 15/121 (12%)

Query: 1   MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
            + FD +F +   Q ++  S +  ++  VI G +  +F +G    GK++TM G    +  
Sbjct: 48  TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEE 107

Query: 60  L--------GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG 111
                    G+IP  +  +F    E+    G  FSV+ S +EI   ++ + DLL+  S+ 
Sbjct: 108 YTWEEDPLAGIIPRTLHQIF----EKLTDNGTEFSVKVSLLEI--YNEELFDLLNPSSDV 161

Query: 112 K 112
            
Sbjct: 162 S 162

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score = 43.8 bits (102), Expect = 7e-06
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 6/134 (4%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSP-QSSAT 59
           F FD +F     QS+I   ++   +  +++G +G +F +G    GKSYTM+G+       
Sbjct: 48  FTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDG 107

Query: 60  LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFL 119
            GVIP  +  +F  I          ++VR S +EI      ++DLL+  ++         
Sbjct: 108 RGVIPRIVEQIFTSI--LSSAANIEYTVRVSYMEIYME--RIRDLLAPQNDNLPVHEEKN 163

Query: 120 KRFHAEEDEEMPCP 133
           +  + +   E+   
Sbjct: 164 RGVYVKGLLEIYVS 177

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 8/135 (5%)

Query: 2   FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
           F FD IF  +  +      +  ++Q+ + G + C+F +G    GK++TM+         G
Sbjct: 52  FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----G 106

Query: 62  VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKR 121
           +IPS IS +F  I++ K K G  + V    IEI   ++++ DLL + +N K      LK 
Sbjct: 107 IIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNKEDTSIGLKH 163

Query: 122 FHAEEDEEMPCPVPP 136
               + E     +  
Sbjct: 164 EIRHDQETKTTTITN 178

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 33/171 (19%), Positives = 72/171 (42%), Gaps = 12/171 (7%)

Query: 2   FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
             +D +F  +  Q ++       ++Q+ + G + C+F +G    GK++T+ G+  +    
Sbjct: 44  HMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGL- 101

Query: 61  GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLK 120
              P A+S LFR + +  +K    FS++A  +E+   +    DLL      K  +L    
Sbjct: 102 --TPRAMSELFRIMKKDSNKF--SFSLKAYMVELYQDTLV--DLL-LPKQAKRLKLDI-- 152

Query: 121 RFHAEEDEEMPCPVPPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHD 171
           +  ++    +       + +     +     S +R+   +L +  + R H 
Sbjct: 153 KKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHL 203

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	100.0
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	100.0
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	100.0
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	100.0
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	100.0
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	100.0
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	100.0
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	100.0
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.64
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	92.93
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.56
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	89.92
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	89.23
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	85.97
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	85.49
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	85.43
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	83.75
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	83.17
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	81.81
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	81.7

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-46  Score=333.95  Aligned_cols=216  Identities=20%  Similarity=0.262  Sum_probs=183.8

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      .|+||+||+ +++|++||+.++.|+|+++++|+|+||||||||||||||||+|+..++...||+||++.+||+.+.....
T Consensus        43 ~f~FD~vf~~~~~q~~vf~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyT~~G~~~~~~~~gii~r~l~~l~~~~~~~~~  122 (323)
T d1bg2a_          43 PYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDE  122 (323)
T ss_dssp             EEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCS
T ss_pred             eeECCEEECCCCCHHHHHHHHHHHHHHHHHcCCCcceeeecccCCCCceeccCCcccccccchhhhHHHHHHhhhhcccc
Confidence            499999999 9999999999999999999999999999999999999999999998877899999999999999987654


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN  158 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~  158 (241)
                        ..++.|.|||+|||  ||++||||.+....+.+++++.++++++|++++.|.+++++..++. |.++|++++|.+|+.
T Consensus       123 --~~~~~v~~S~~EIy--ne~i~DLL~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~  198 (323)
T d1bg2a_         123 --NLEFHIKVSYFEIY--LDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEH  198 (323)
T ss_dssp             --SEEEEEEEEEEEEE--TTEEEESSCTTCCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHH
T ss_pred             --ccceEEEEEEEEEE--cCcccccccccccceeEeeccccceeecCCEEEEEeccHhHhHHhhhcccceeecccCCCCC
Confidence              47899999999999  9999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             Cch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhc-----cccccccchhhHHHHHHhhHHH
Q psy9852         159 SSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKN-----DFNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       159 SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      ||| +.++...+.........      ...|.|  .-+||||+|+..++     ...++..+|.+|..|++.=++|
T Consensus       199 ssRsh~i~~i~v~~~~~~~~~------~~~s~l--~~vDLAGse~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al  266 (323)
T d1bg2a_         199 SSRSHSIFLINVKQENTQTEQ------KLSGKL--YLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL  266 (323)
T ss_dssp             HHHSEEEEEEEEEEEETTTCC------EEEEEE--EEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHH
T ss_pred             CCccceEEEEEEEEEeCCCCc------EEEEEE--EEEecccccccccccchhhhhhhhhcccccHHHHHHHHHHH
Confidence            999 44333333211110000      011112  23799999987664     4577888899999888876665

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=100.00  E-value=1e-45  Score=336.67  Aligned_cols=212  Identities=22%  Similarity=0.300  Sum_probs=166.8

Q ss_pred             CeecceecC-C--------CChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHH
Q psy9852           1 MFAFDAIFS-D--------EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLF   71 (241)
Q Consensus         1 tF~FD~VF~-~--------a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF   71 (241)
                      +|.||+||+ +        ++|++||+.++.|+|+.+++|||+||||||||||||||||+|++.. .++|||||++++||
T Consensus        46 ~f~FD~vf~~~~~~~~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~-~~~Glipr~l~~lf  124 (349)
T d2zfia1          46 SFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEK-DQQGIIPQLCEDLF  124 (349)
T ss_dssp             EEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGG-GCBCHHHHHHHHHH
T ss_pred             eEEeceEeCCCCCccccccccHHHHHHHhhHHHHHHHHhccCceeeeeccCCCCCceeeccCccc-cccCchHHHHhhhh
Confidence            499999998 6        5899999999999999999999999999999999999999998642 36899999999999


Q ss_pred             HHHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCC
Q psy9852          72 RCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS-NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDS  149 (241)
Q Consensus        72 ~~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~  149 (241)
                      +.++..... +..+.|.+||+|||  ||+|+|||++.. ....+++++.++++|+++++++|.+++|+..+|. |..+|+
T Consensus       125 ~~~~~~~~~-~~~~~v~~S~~Eiy--ne~i~DLL~~~~~~~~~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~  201 (349)
T d2zfia1         125 SRINDTTND-NMSYSVEVSYMEIY--CERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRT  201 (349)
T ss_dssp             HHHHTCCCT-TEEEEEEEEEEEEE--TTEEEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHT
T ss_pred             hhccccccC-CcceEEEEEeeeee--CCEEEecccccccCCceEEecCCCCcEEEEeEEEeccCHHHHHHHHHhcccCeE
Confidence            999876543 57899999999999  999999998865 4578899999999999999999999999999999 999999


Q ss_pred             ccccCCCCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhh
Q psy9852         150 LISNKRNDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREK  225 (241)
Q Consensus       150 ~~~T~~N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (241)
                      +++|.+|..|||    |+....+...+.... ....+    .|.|  .-+||||+|+..+++     ..+.|+.+...||
T Consensus       202 ~~~t~~n~~ssrsh~i~~i~i~~~~~~~~~~-~~~~~----~s~l--~~VDLAGsEr~~~~~-----~~g~~~~e~~~IN  269 (349)
T d2zfia1         202 VAATNMNETSSRSHAVFNIIFTQKRHDAETN-ITTEK----VSKI--SLVDLAGSERADSTG-----AKGTRLKEGANIN  269 (349)
T ss_dssp             SGGGGTTTHHHHSEEEEEEEEEEEEECTTTT-CEEEE----EEEE--EEEECCCGGGC-----------CCCHHHHHHHH
T ss_pred             eccCCCccccccccceEEEEEEEEecccCCC-cccce----eeEE--EEeecccchhhhhcC-----Ccccchhhccchh
Confidence            999999999999    333333222111111 11111    0112  237999999876543     3444555555555


Q ss_pred             HHH
Q psy9852         226 RAL  228 (241)
Q Consensus       226 ~~~  228 (241)
                      +||
T Consensus       270 ~SL  272 (349)
T d2zfia1         270 KSL  272 (349)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            554

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=100.00  E-value=4.7e-45  Score=332.93  Aligned_cols=213  Identities=23%  Similarity=0.314  Sum_probs=180.4

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC-CCCCCCchHHHHHHHHHHHHhcc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ-SSATLGVIPSAISWLFRCISEQK   78 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~-~~~~~GIipr~~~~LF~~i~~~~   78 (241)
                      +|+||+||+ +++|++||+.++.|+|+++++|+|+||||||||||||||||+|+.. ++..+|||||++++||+.+....
T Consensus        47 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYG~tgSGKT~Tm~G~~~~~~~~~Giipr~l~~l~~~~~~~~  126 (354)
T d1goja_          47 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSA  126 (354)
T ss_dssp             EEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSC
T ss_pred             eEECCeEcCCCCCHHHHHHHHHHHHHHHhhccCceeEEecccCCCCcceeeecccccCcccceecchhHHHHhhhhcccc
Confidence            499999999 9999999999999999999999999999999999999999999765 34578999999999999988765


Q ss_pred             cCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCC
Q psy9852          79 HKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRND  157 (241)
Q Consensus        79 ~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~  157 (241)
                      .  ...|.|.|||+|||  ||+|+|||++....+.+++++.++++++++++++|.+++++..++. |..+|.+++|.+|.
T Consensus       127 ~--~~~~~v~vS~~EIy--ne~i~DLL~~~~~~l~~~e~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~  202 (354)
T d1goja_         127 A--NIEYTVRVSYMEIY--MERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQ  202 (354)
T ss_dssp             T--TEEEEEEEEEEEEE--TTEEEETTSTTCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             c--CceEEEEeehhhee--cceEeecccccccceeeeeecCCCEeecCceeecchhHHHHHHHHhhcccccccccccccc
Confidence            3  47899999999999  9999999999998899999999999999999999999999999999 99999999999999


Q ss_pred             CCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhc-----cccccccchhhHHHHHHhhHHH
Q psy9852         158 NSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKN-----DFNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       158 ~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      .|||    |++...+...+.+  ....       +  +..-+||||+|+..++     ...+..++|.+|..|++.=++|
T Consensus       203 ~ssRsH~i~~i~v~~~~~~~~--~~~~-------s--~l~~vDLAGsE~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~aL  271 (354)
T d1goja_         203 ESSRSHSIFVITITQKNVETG--SAKS-------G--QLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL  271 (354)
T ss_dssp             CGGGCEEEEEEEEEEEETTTT--EEEE-------E--EEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHH
T ss_pred             cccccceEEEEEEEEeecCCC--CeEE-------E--EEEEeeccCcccccccCCccchhhhhhhhhHHHHHHHHHHHHH
Confidence            9999    4444444332222  1110       1  1234799999987664     3466677888888887776654

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=3.2e-45  Score=335.64  Aligned_cols=209  Identities=20%  Similarity=0.259  Sum_probs=172.4

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|+||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||+|+..   ++||+||++++||+.+.....
T Consensus        43 ~f~FD~vf~~~~~q~~vy~~-v~~lv~~~l~G~n~~i~aYGqTGSGKTyTm~G~~~---~~Giipr~~~~lf~~i~~~~~  118 (364)
T d1sdma_          43 QHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADS---NPGLTPRAMSELFRIMKKDSN  118 (364)
T ss_dssp             EEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEECSTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHHGGG
T ss_pred             EEECCeecCCCCCHHHHHHH-HHHHHHHHhcCCceeeeccccCCCCcccccccCcc---ccchhHHHHHHHHhhhhhccc
Confidence            499999999 9999999986 69999999999999999999999999999999986   589999999999999988764


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCC---CceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSN---GKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR  155 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~---~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~  155 (241)
                        ...|.|.+||+|||  ||+|+|||++...   .+.+++++..+++|+|++++.|.+++|+..+|. |.++|++++|.+
T Consensus       119 --~~~~~v~~S~~EIy--ne~i~DLL~~~~~~~~~l~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~  194 (364)
T d1sdma_         119 --KFSFSLKAYMVELY--QDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLM  194 (364)
T ss_dssp             --TEEEEEEEEEEEES--SSCEEETTSCTTSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCT
T ss_pred             --cccceEEEEEEEEe--ccccccccCcccccccccceeecccCccccccceeeeeCCHHHHHHHhhccceeeccccccc
Confidence              37899999999999  9999999987653   357899999999999999999999999999999 999999999999


Q ss_pred             CCCCch-hhhh---ceeeeCCCCCCccccccccccccccccccccchhhhhhhhc-----cccccccchhhHHHHHHhhH
Q psy9852         156 NDNSSL-YSNS---NERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKN-----DFNQSTWRNDRLEQLKREKR  226 (241)
Q Consensus       156 N~~SSr-f~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  226 (241)
                      |..||| ++++   .++...+..  .. ..      |  +..-+||||+|+..++     ...++..+|.+|..|++.=+
T Consensus       195 n~~ssRsH~i~~i~v~~~~~~~~--~~-~~------~--kl~~vDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~  263 (364)
T d1sdma_         195 NEQSSRSHLIVSVIIESTNLQTQ--AI-AR------G--KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIS  263 (364)
T ss_dssp             TCHHHHSEEEEEEEEEEEETTTC--CE-EE------E--EEEEEECCCCSCCCC---------CCCTTCHHHHHHHHHHH
T ss_pred             cccccccceEEEEEEEEeccCcc--ee-ee------E--EEEeechhhccccccccccCceeeeccccccchhhHHHHHH
Confidence            999999 4333   333322111  10 00      0  1123799999987664     35677888888888887655


Q ss_pred             HH
Q psy9852         227 AL  228 (241)
Q Consensus       227 ~~  228 (241)
                      +|
T Consensus       264 aL  265 (364)
T d1sdma_         264 AL  265 (364)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=100.00  E-value=2.2e-45  Score=336.53  Aligned_cols=218  Identities=20%  Similarity=0.183  Sum_probs=162.6

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCC---CCCCCchHHHHHHHHHHHHh
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS---SATLGVIPSAISWLFRCISE   76 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~---~~~~GIipr~~~~LF~~i~~   76 (241)
                      +|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+...   ...+||+||++++||..++.
T Consensus        81 ~f~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~  160 (362)
T d1v8ka_          81 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQ  160 (362)
T ss_dssp             EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTS
T ss_pred             eEeCCeecCCCCCHHHHHHHHHHHHHHHHHhccCceEEeeccCCCCCceeeeecCCCCcccccCCeeeehhhhHHHHhhc
Confidence            499999999 99999999999999999999999999999999999999999998642   23689999999999999876


Q ss_pred             cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852          77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR  155 (241)
Q Consensus        77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~  155 (241)
                      .... ...|.|.+||+|||  ||+++|||++.. ...+++++..+++++|++++.|.+++|+.++|. |.++|++++|.+
T Consensus       161 ~~~~-~~~~~v~vS~~EIy--ne~i~DLL~~~~-~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~  236 (362)
T d1v8ka_         161 PRYR-NLNLEVYVTFFEIY--NGKVFDLLNKKA-KLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFA  236 (362)
T ss_dssp             HHHH-TTCCEEEEEEEEEE--TTEEEETTTTTE-EEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC------
T ss_pred             cccc-ccchhheeeeeeec--CCeEEecccCCc-cccccccccCCcccCCCEEEEecCHHHHHHHHhccccccccccccC
Confidence            5432 46899999999999  999999997655 356789999999999999999999999999999 999999999999


Q ss_pred             CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc------ccccccchhhHHHHHHhhHHH
Q psy9852         156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND------FNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      |+.||| ++++...+.....   ..        +  +..-+||||+||..+++      ..++..+|.+|..|++.=++|
T Consensus       237 N~~SSRSH~i~~i~i~~~~~---~~--------~--~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL  303 (362)
T d1v8ka_         237 NSNSSRSHACFQILLRTKGR---LH--------G--KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL  303 (362)
T ss_dssp             --CCCSSEEEEEEEEESSSS---EE--------E--EEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcceeeEEEEEEEecce---ee--------e--eEeeeecccccccccccccchhhhhhhhhhcccHHHHHHHHHHH
Confidence            999999 5655555542211   00        1  22347999999887652      345666666666666654433


Q ss_pred             HHHhhhccccc
Q psy9852         229 LIELAATKTHL  239 (241)
Q Consensus       229 ~~~~~~~~~~~  239 (241)
                          +.-+.|+
T Consensus       304 ----~~~~~hi  310 (362)
T d1v8ka_         304 ----GQNKAHT  310 (362)
T ss_dssp             ----TC-----
T ss_pred             ----hcCCCcC
Confidence                4444553

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.6e-44  Score=326.53  Aligned_cols=219  Identities=21%  Similarity=0.187  Sum_probs=166.8

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHh-cCCCEEEEcccccCCCcceeeccCCCC--CCCCCchHHHHHHHHHHHHh
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVI-SGSDGCLFCFGHARLGKSYTMVGSPQS--SATLGVIPSAISWLFRCISE   76 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl-~G~n~ti~aYGqtgSGKTyTm~G~~~~--~~~~GIipr~~~~LF~~i~~   76 (241)
                      +|+||+||+ +++|++||+.++.|+|++++ +|+|+||||||||||||||||+|+...  ..++||+||++++||+.++.
T Consensus        51 ~F~fD~Vf~~~~~q~~vy~~~~~plv~~~~~~G~n~~i~aYGqTGSGKTyTm~G~~~~~~~~~~Giipr~~~~lf~~~~~  130 (330)
T d1ry6a_          51 EFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNI  130 (330)
T ss_dssp             EEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHH
T ss_pred             eEeCCeecCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEeeeccccccceeeecccccccccCCCchhHHHhhhhhhhhh
Confidence            499999999 99999999999999999988 599999999999999999999998642  34789999999999999887


Q ss_pred             cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852          77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR  155 (241)
Q Consensus        77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~  155 (241)
                      ...  ...+.|.+||+|||  ||+|+|||++... ..+++++.++++++|++++.|.+++|+..+|. +..+|.+++|.+
T Consensus       131 ~~~--~~~~~v~~S~~EIy--ne~i~DLL~~~~~-~~~~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~  205 (330)
T d1ry6a_         131 YDK--DNTKGIFISFYEIY--CGKLYDLLQKRKM-VAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQ  205 (330)
T ss_dssp             HCS--SSCEEEEEEEEEEE--TTEEEESCCC------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             hcc--cceEEEEEEEEeee--ccccccccccccc-ceeeecCCCCccccCceEEEEeeccchhhhhhccccccccccccc
Confidence            654  36899999999999  9999999977654 56688999999999999999999999999999 999999999999


Q ss_pred             CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccc------cccccchhhHHHHHHhhHHH
Q psy9852         156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDF------NQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  228 (241)
                      |+.||| +.++...+.+......         .|  +..-+||||+|+..+++-      .++..+|..|..|++.=++|
T Consensus       206 n~~ssRsh~i~~i~v~~~~~~~~---------~s--~l~~vDLAGsEr~~~~~~~~~~~~~e~~~IN~sL~~L~~vi~al  274 (330)
T d1ry6a_         206 NDESSRSHAILNIDLKDINKNTS---------LG--KIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAM  274 (330)
T ss_dssp             TTGGGGSEEEEEEEEEETTTTEE---------EE--EEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCcceEEEEEEEecccccc---------cc--eeeeecccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHH
Confidence            999999 6655555543222110         01  223479999999876532      24445555555555443332


Q ss_pred             HHHhhhccccc
Q psy9852         229 LIELAATKTHL  239 (241)
Q Consensus       229 ~~~~~~~~~~~  239 (241)
                          +..+.|+
T Consensus       275 ----~~~~~~i  281 (330)
T d1ry6a_         275 ----DSDKNHI  281 (330)
T ss_dssp             ----TTSTTSC
T ss_pred             ----hcCCCcC
Confidence                4444553

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=100.00  E-value=5e-45  Score=331.51  Aligned_cols=214  Identities=22%  Similarity=0.292  Sum_probs=164.1

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCC--------CCCCCchHHHHHHHH
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS--------SATLGVIPSAISWLF   71 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~--------~~~~GIipr~~~~LF   71 (241)
                      +|+||+||+ +++|++||+.++.|+|+++++|+|+||||||||||||||||+|+..+        ...+|||||++++||
T Consensus        48 ~f~FD~vf~~~~~q~~vy~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lf  127 (345)
T d1x88a1          48 TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIF  127 (345)
T ss_dssp             EEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHH
T ss_pred             eEecCEEeCCCCCHHHHHHHHHHHhHHHHhccCCceEEeeeeccccceEEeeecCCcccccccccCccCCcHHHHHHHHH
Confidence            499999999 99999999999999999999999999999999999999999998753        124799999999999


Q ss_pred             HHHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCC-----ceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-Hh
Q psy9852          72 RCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG-----KFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TL  145 (241)
Q Consensus        72 ~~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~-----~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~  145 (241)
                      +.++..    +..+.|.|||+|||  ||+|+|||++....     ...+++..++++|+|+++++|.+++|+..+|. |.
T Consensus       128 ~~~~~~----~~~~~v~vS~~EIy--~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~  201 (345)
T d1x88a1         128 EKLTDN----GTEFSVKVSLLEIY--NEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGA  201 (345)
T ss_dssp             HHTSSS----SEEEEEEEEEEEEE--TTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHH
T ss_pred             Hhhhcc----CceEEEEEEEEEEE--CCeeEECCCCCCcccccceeeecccCCCCEEEcCCEEEEeCCHHHHHHHHHhhh
Confidence            987653    46899999999999  99999999876432     23345667789999999999999999999999 99


Q ss_pred             cCCCccccCCCCCCch-hhhhceeeeC---CCCCCccccccccccccccccccccchhhhhhhhc-----cccccccchh
Q psy9852         146 SRDSLISNKRNDNSSL-YSNSNERLHD---PGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKN-----DFNQSTWRND  216 (241)
Q Consensus       146 ~~R~~~~T~~N~~SSr-f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~  216 (241)
                      ++|++++|.+|..||| ++++...+..   .......  .+    .|.|  .-+||||+|+..+.     ...+...+|.
T Consensus       202 ~~R~~~~t~~n~~SsRsH~i~~i~i~~~~~~~~~~~~--~~----~s~l--~~vDLAGsEr~~~~~~~~~~~~e~~~in~  273 (345)
T d1x88a1         202 AKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL--VK----IGKL--NLVDLAGSENIGRSGAVDKRAREAGNINQ  273 (345)
T ss_dssp             HHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEE--EE----EEEE--EEEECCCCCC---------------CCCH
T ss_pred             ccccccccCccccccccceEEEEEEEEeeccCCCCCc--eE----eeeE--EEEecCCccccccccchhhhhcccccccc
Confidence            9999999999999999 4443333321   1111111  11    1112  23799999976554     3457777777


Q ss_pred             hHHHHHHhhHHH
Q psy9852         217 RLEQLKREKRAL  228 (241)
Q Consensus       217 ~~~~~~~~~~~~  228 (241)
                      +|..|++.=++|
T Consensus       274 Sl~~L~~vi~al  285 (345)
T d1x88a1         274 SLLTLGRVITAL  285 (345)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            777777665554

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=100.00  E-value=1.9e-43  Score=320.86  Aligned_cols=206  Identities=25%  Similarity=0.338  Sum_probs=149.8

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|+||+||+ +++|++||+. +.|+|+.+++|||+||||||||||||||||+|+.     +||+||++++||+.++....
T Consensus        51 ~f~FD~vf~~~~~q~~vy~~-v~~~v~~~l~G~n~~i~aYGqtgSGKT~T~~G~~-----~Giipr~~~~lf~~~~~~~~  124 (342)
T d1f9va_          51 EFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINKLKT  124 (342)
T ss_dssp             EEEESEEECTTCCHHHHHHH-HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHSTT-----TSHHHHHHHHHHHHHHHHGG
T ss_pred             EeecCeEeCCCCCHHHHHHH-hhhhhcchhcccccceeeeeccCCccccccccCc-----CchhHHHHHHHHhhhhhhhc
Confidence            499999999 9999999985 6799999999999999999999999999999964     69999999999999987655


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCC---------ceE-EEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNG---------KFF-RLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRD  148 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~---------~~l-~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R  148 (241)
                      . +..+.|.|||+|||  ||+|+|||++....         ..+ .+...++++|.|++++.|.+++|+..++. |.++|
T Consensus       125 ~-~~~~~v~vS~~EIy--ne~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R  201 (342)
T d1f9va_         125 K-GWDYKVNCEFIEIY--NENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLR  201 (342)
T ss_dssp             G-TCEEEEEEEEEEEE--TTEEEETTC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC---
T ss_pred             c-ccccceeeeeeeec--cCeeEECCCCCCCccccccccceeeeeecCCCCcEEEeeeEEEEecchHHHHHHHhhhhhcc
Confidence            3 57999999999999  99999999876532         123 45556889999999999999999999999 99999


Q ss_pred             CccccCCCCCCch-hhhhceeeeCC-CCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhH
Q psy9852         149 SLISNKRNDNSSL-YSNSNERLHDP-GGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKR  226 (241)
Q Consensus       149 ~~~~T~~N~~SSr-f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (241)
                      .+++|.+|+.||| +.++...+... ...+.. ..      |.|  .-+||||+|+..++     +..+.|+.+...||+
T Consensus       202 ~~~~t~~N~~ssrSh~i~~i~v~~~~~~~~~~-~~------s~l--~~vDLAGse~~~~~-----~~~~~~~~e~~~iN~  267 (342)
T d1f9va_         202 STASTASNEHSSASHSIFIIHLSGSNAKTGAH-SY------GTL--NLVDLAGSERINVS-----QVVGDRLRETQNINK  267 (342)
T ss_dssp             --------CCGGGSEEEEEEEEEEECC--CCE-EE------EEE--EEEECCCCCCCCGG-----GCCHHHHHHHHHHHH
T ss_pred             ccccccccccCcccceeEEEEEEEecCCccce-ee------eee--eeeeccCCcccccc-----cchhhhhhhhhhccH
Confidence            9999999999999 44433333211 111111 11      112  23799999876543     344566666666666


Q ss_pred             HHH
Q psy9852         227 ALL  229 (241)
Q Consensus       227 ~~~  229 (241)
                      ||+
T Consensus       268 Sl~  270 (342)
T d1f9va_         268 SLS  270 (342)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=9.9e-44  Score=326.06  Aligned_cols=213  Identities=25%  Similarity=0.326  Sum_probs=168.8

Q ss_pred             CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852           1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH   79 (241)
Q Consensus         1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~   79 (241)
                      +|.||+||+ +++|++||+ .+.|+|+++++|||+||||||||||||||||+|++.   .+|||||++++||+.++....
T Consensus        93 ~F~FD~vf~~~~~Q~~Vy~-~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~---~~Giipr~~~~Lf~~~~~~~~  168 (368)
T d2ncda_          93 IFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPE---SVGVIPRTVDLLFDSIRGYRN  168 (368)
T ss_dssp             EEECSEEECTTCCHHHHHT-TTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETT---EECHHHHHHHHHHHHHHHHHT
T ss_pred             eeECCeEECCCCCccchHH-HHHHHHHHHhcccceeEEeeccCCCccceEeccccc---ccchhhHHHHHHhhhhhhhcc
Confidence            499999999 999999997 578999999999999999999999999999999886   589999999999999987655


Q ss_pred             CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCc--eEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCC
Q psy9852          80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGK--FFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRN  156 (241)
Q Consensus        80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~--~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N  156 (241)
                       .+..+.|.|||+|||  ||+|+|||++.....  .+++++.++++++|++++.|.+++++..++. |.++|.++.|.+|
T Consensus       169 -~~~~~~v~vS~~EIy--ne~i~DLL~~~~~~~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~~t~~n  245 (368)
T d2ncda_         169 -LGWEYEIKATFLEIY--NEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGN  245 (368)
T ss_dssp             -TSCEEEEEEEEEEES--SSCEEETTCSSCCCCCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHHSCCCSSSCT
T ss_pred             -ccccceEEEEEEEEe--cceeecccccccccccceeeccccccccccccceeccCCHHHHHHHHHHHHhhccccccccc
Confidence             357899999999999  999999998876654  4457888999999999999999999999999 9999999999999


Q ss_pred             CCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhc-cccccccchhhHHHHHHhhHHH
Q psy9852         157 DNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKN-DFNQSTWRNDRLEQLKREKRAL  228 (241)
Q Consensus       157 ~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  228 (241)
                      ..||| +.++...+......+...  +    -|.|  .-+||||+|+..+. ...++.++|.+|..|++.=++|
T Consensus       246 ~~ssrSh~i~~i~v~~~~~~~~~~--~----~s~l--~~VDLAGse~~~~~~~~~E~~~IN~SL~aL~~vi~aL  311 (368)
T d2ncda_         246 ERSSRSHAVTKLELIGRHAEKQEI--S----VGSI--NLVDLAGSESPKTSTRMTETKNINRSLSELTNVILAL  311 (368)
T ss_dssp             TTTTTCEEEEEEEEEEECTTSCCE--E----EEEE--EEEECCCCCCC----------CTTHHHHHHHHHHHHH
T ss_pred             ccccccceEEEEEEEEEecCCCce--E----eeee--eeeeeccccccchhhhhcccccchhhHHHHHHHHHHH
Confidence            99999 444444333211111110  0    0112  23699999976554 5677788888888888765554

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.64  E-value=0.0027  Score=51.46  Aligned_cols=48  Identities=13%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852           2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus         2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~   51 (241)
                      |+||..+-...++..|. .+..+++..-..+| .++-||++|+||||-+.
T Consensus         7 ~tFdnF~vg~~N~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKTHLl~   54 (213)
T d1l8qa2           7 YTLENFIVGEGNRLAYE-VVKEALENLGSLYN-PIFIYGSVGTGKTHLLQ   54 (213)
T ss_dssp             CCSSSCCCCTTTHHHHH-HHHHHHHTTTTSCS-SEEEECSSSSSHHHHHH
T ss_pred             CChhhccCCCcHHHHHH-HHHHHHhCcCCCCC-cEEEECCCCCcHHHHHH
Confidence            78887776555666776 45556655444455 38899999999999985

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.93  E-value=0.022  Score=45.52  Aligned_cols=37  Identities=14%  Similarity=0.135  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCE-----EEEcccccCCCcceee
Q psy9852          14 SEICTSALSDVIQAVISGSDG-----CLFCFGHARLGKSYTM   50 (241)
Q Consensus        14 e~Vy~~~v~plV~~vl~G~n~-----ti~aYGqtgSGKTyTm   50 (241)
                      +.-++.+..-+...+..|-..     .++.||++|+|||.++
T Consensus        22 e~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~   63 (287)
T d1w5sa2          22 RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA   63 (287)
T ss_dssp             CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHH
Confidence            334454444455666766543     4678999999999887

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.56  E-value=0.025  Score=46.85  Aligned_cols=77  Identities=12%  Similarity=0.170  Sum_probs=53.6

Q ss_pred             eecceecC-CCChHHHHHHHHHHHHH-HHhc--C--CCEEEEcccccCCCcceeecc------CC----C----CCCCCC
Q psy9852           2 FAFDAIFS-DEPQSEICTSALSDVIQ-AVIS--G--SDGCLFCFGHARLGKSYTMVG------SP----Q----SSATLG   61 (241)
Q Consensus         2 F~FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~--G--~n~ti~aYGqtgSGKTyTm~G------~~----~----~~~~~G   61 (241)
                      ++||.|-+ +.-.+.+.+.+..|+.. ..+.  |  +...|+-||+.|+|||+.+.-      .+    .    .....|
T Consensus         4 ~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~~~   83 (265)
T d1r7ra3           4 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG   83 (265)
T ss_dssp             CSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSCTT
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhcccc
Confidence            68999999 77778888877777752 2333  2  345799999999999987531      10    0    012456


Q ss_pred             chHHHHHHHHHHHHhcc
Q psy9852          62 VIPSAISWLFRCISEQK   78 (241)
Q Consensus        62 Iipr~~~~LF~~i~~~~   78 (241)
                      -....++.+|..+....
T Consensus        84 ~~~~~l~~~f~~A~~~~  100 (265)
T d1r7ra3          84 ESEANVREIFDKARQAA  100 (265)
T ss_dssp             THHHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHhcC
Confidence            77888889998877653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.92  E-value=0.076  Score=42.31  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhcCCCE-----EEEcccccCCCcceeec
Q psy9852          20 ALSDVIQAVISGSDG-----CLFCFGHARLGKSYTMV   51 (241)
Q Consensus        20 ~v~plV~~vl~G~n~-----ti~aYGqtgSGKTyTm~   51 (241)
                      .+...++.+.+|...     .|+-||++|||||+...
T Consensus        14 ~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~   50 (273)
T d1gvnb_          14 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRS   50 (273)
T ss_dssp             HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHH
Confidence            455555666666554     48999999999999764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.23  E-value=0.1  Score=41.10  Aligned_cols=31  Identities=16%  Similarity=0.146  Sum_probs=21.3

Q ss_pred             HHHHHHHHhcC---CCEEEEcccccCCCcceeec
Q psy9852          21 LSDVIQAVISG---SDGCLFCFGHARLGKSYTMV   51 (241)
Q Consensus        21 v~plV~~vl~G---~n~ti~aYGqtgSGKTyTm~   51 (241)
                      +..++...+.+   -..+++-||++|+|||+++-
T Consensus        28 l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~   61 (276)
T d1fnna2          28 LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR   61 (276)
T ss_dssp             HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHH
Confidence            34455555432   33578999999999997763

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.97  E-value=0.11  Score=42.44  Aligned_cols=76  Identities=14%  Similarity=0.169  Sum_probs=47.1

Q ss_pred             ecceecC-CCChHHHHHHHHHHHHH-HHhc--CC--CEEEEcccccCCCcceeeccCCC--------------CCCCCCc
Q psy9852           3 AFDAIFS-DEPQSEICTSALSDVIQ-AVIS--GS--DGCLFCFGHARLGKSYTMVGSPQ--------------SSATLGV   62 (241)
Q Consensus         3 ~FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~--G~--n~ti~aYGqtgSGKTyTm~G~~~--------------~~~~~GI   62 (241)
                      +||.|-+ +..-+++-+.+..|+.. ..+.  |.  .-.++-||+.|||||+...--..              .....|-
T Consensus         2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~   81 (258)
T d1e32a2           2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE   81 (258)
T ss_dssp             CGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTH
T ss_pred             ChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhccccccc
Confidence            4777777 65555666655555552 2333  32  34589999999999987641110              1123566


Q ss_pred             hHHHHHHHHHHHHhcc
Q psy9852          63 IPSAISWLFRCISEQK   78 (241)
Q Consensus        63 ipr~~~~LF~~i~~~~   78 (241)
                      -...+..+|+......
T Consensus        82 ~~~~l~~~f~~A~~~~   97 (258)
T d1e32a2          82 SESNLRKAFEEAEKNA   97 (258)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            6778888898876553

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.49  E-value=0.16  Score=39.92  Aligned_cols=37  Identities=27%  Similarity=0.252  Sum_probs=24.7

Q ss_pred             CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852          10 DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        10 ~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      -..|+++-+. +...   +-.+....++-||+.|+|||.++
T Consensus        26 iig~~~~~~~-l~~~---i~~~~~~~lll~Gp~G~GKTtla   62 (231)
T d1iqpa2          26 IVGQEHIVKR-LKHY---VKTGSMPHLLFAGPPGVGKTTAA   62 (231)
T ss_dssp             CCSCHHHHHH-HHHH---HHHTCCCEEEEESCTTSSHHHHH
T ss_pred             ccCcHHHHHH-HHHH---HHcCCCCeEEEECCCCCcHHHHH
Confidence            4455555442 3333   34466667899999999999877

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=85.43  E-value=0.12  Score=45.16  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=24.7

Q ss_pred             HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852          23 DVIQAVISGSDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        23 plV~~vl~G~n~ti~aYGqtgSGKTyTm   50 (241)
                      ..+..++..-.+.|+.-|+||||||.||
T Consensus       148 ~~l~~l~~~~~GliLvtGpTGSGKSTTl  175 (401)
T d1p9ra_         148 DNFRRLIKRPHGIILVTGPTGSGKSTTL  175 (401)
T ss_dssp             HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred             HHHHHHHhhhhceEEEEcCCCCCccHHH
Confidence            4566778888999999999999999999

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=83.75  E-value=0.36  Score=39.48  Aligned_cols=46  Identities=17%  Similarity=0.198  Sum_probs=30.4

Q ss_pred             CCEEEEcccccCCCcceeecc------CC------C--CCCCCCchHHHHHHHHHHHHhc
Q psy9852          32 SDGCLFCFGHARLGKSYTMVG------SP------Q--SSATLGVIPSAISWLFRCISEQ   77 (241)
Q Consensus        32 ~n~ti~aYGqtgSGKTyTm~G------~~------~--~~~~~GIipr~~~~LF~~i~~~   77 (241)
                      ....++-||++|||||+...-      .+      .  -....|--+..++.+|+.+...
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~  103 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKA  103 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTT
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcchhHHHHHHHHHHHHHHHc
Confidence            345699999999999987642      11      0  0112344567788889887654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=83.17  E-value=0.25  Score=40.03  Aligned_cols=31  Identities=13%  Similarity=0.059  Sum_probs=22.1

Q ss_pred             HHHHHHHHhcCCC---EEEEcccccCCCcceeec
Q psy9852          21 LSDVIQAVISGSD---GCLFCFGHARLGKSYTMV   51 (241)
Q Consensus        21 v~plV~~vl~G~n---~ti~aYGqtgSGKTyTm~   51 (241)
                      +..+++.+..+-.   .+|+-||++|||||+...
T Consensus        25 ~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~   58 (246)
T d1d2na_          25 GELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAA   58 (246)
T ss_dssp             HHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHH
T ss_pred             HHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHH
Confidence            4556666554443   468999999999997654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=81.81  E-value=0.27  Score=39.97  Aligned_cols=74  Identities=15%  Similarity=0.225  Sum_probs=39.9

Q ss_pred             ecceecC-CCChHHHHHHHHHHHHH-HHhc--C--CCEEEEcccccCCCcceeeccCCC--C------------CCCCCc
Q psy9852           3 AFDAIFS-DEPQSEICTSALSDVIQ-AVIS--G--SDGCLFCFGHARLGKSYTMVGSPQ--S------------SATLGV   62 (241)
Q Consensus         3 ~FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~--G--~n~ti~aYGqtgSGKTyTm~G~~~--~------------~~~~GI   62 (241)
                      +||-|-+ +...+.+ +.++.++.. ..++  |  ....|+-||+.|||||+...--..  .            ....|-
T Consensus         7 ~~~di~G~~~~k~~l-~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~   85 (247)
T d1ixza_           7 TFKDVAGAEEAKEEL-KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV   85 (247)
T ss_dssp             CGGGCCSCHHHHHHH-HHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTH
T ss_pred             cHHHHccHHHHHHHH-HHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccccH
Confidence            5666655 3333333 334554432 1222  2  234689999999999987642110  0            012344


Q ss_pred             hHHHHHHHHHHHHhc
Q psy9852          63 IPSAISWLFRCISEQ   77 (241)
Q Consensus        63 ipr~~~~LF~~i~~~   77 (241)
                      ....++.+|+.+...
T Consensus        86 ~~~~l~~~f~~a~~~  100 (247)
T d1ixza_          86 GAARVRDLFETAKRH  100 (247)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHc
Confidence            456677888776543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.70  E-value=0.29  Score=37.73  Aligned_cols=28  Identities=25%  Similarity=0.377  Sum_probs=23.3

Q ss_pred             HHHHHHhcC---CCEEEEcccccCCCcceee
Q psy9852          23 DVIQAVISG---SDGCLFCFGHARLGKSYTM   50 (241)
Q Consensus        23 plV~~vl~G---~n~ti~aYGqtgSGKTyTm   50 (241)
                      +-++.++.|   .+..++.||++|||||+-.
T Consensus        21 ~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~   51 (251)
T d1szpa2          21 KNLDTLLGGGVETGSITELFGEFRTGKSQLC   51 (251)
T ss_dssp             HHHHHHHTSSEESSSEEEEEESTTSSHHHHH
T ss_pred             HHHHhhhCCCCcCCeEEEEEcCCCCCHHHHH
Confidence            567888887   6678899999999999765