Psyllid ID: psy9914

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
HIFDPYCFQILNFYQTAAIYKPAVFFNDYWNHAAIIDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKVLDISFAAGRKALGFIPIPDFKDKGSYVESSTKQYDELAFKYLSWALFPLLAGYAVYSLLYLEHKGWYSWVLNMLYGFLLTFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIESDRNPDFDNSHALIWKHDNLKLKNNGSIYLHVYFTKPVSQFGDTPQSLKTKLTATTTIHGVKQLNKFKRLKFQRTQNLLTGQTEASLEEIKRWIYKIDPTRVNEFGYSAAMENNAESSNAVDSNKEQQAIKSAEEKKKE
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcHHHHHHHHHHHEEEEEEEEEEccccEEEEEccccEEEEEEEEccEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEEEEEcccccccccccEEEEEEEEEEccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccEEEEEccccccccccEEEEEEEccccccccccccccccccEEEEEEEcEEEEccccEEEEEEEEEEEEEEEEccHHHHHHHEEEcccccccccccccccccccccccccccccHHHHcccHHHHHcc
ccccHHHHHHHHHHHHHHHHccHHHHccHHHHHHHHEHHHHccccccccccHHHHHHHHHHHHHHHHHEEcccccEEEEEEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEHHEEEccccccccEEcccccEEEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccHHHHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHcccEEEHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccHHHHHHccccccccccccHHHHHHHHHHHHccc
HIFDPYCFQILNFYQtaaiykpavffndywnhAAIIDIQFWnnrqsleglsvRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKVLDISFAAgrkalgfipipdfkdkgsyvessTKQYDELAFKYLSWALFPLLAGYAVYSLLYLEHKGWYSWVLNMLYGFLLTfgttsledgdivnVDVTVYLngyhgdcsatfcvgevdaSGKFLVNVAQQALHAAISvvkpgeyfstiesdrnpdfdnshaLIWKhdnlklknngsiYLHVYftkpvsqfgdtpqslktKLTATTTIHGVKQLNKFKRLKFQRtqnlltgqtEASLEEIKRWIYkidptrvnefgysaamennaessnavdsnKEQQAIKSAEEKKKE
HIFDPYCFQILNFYQTAAIYKPAVFFNDYWNHAAIIDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKVLDISFAAGRKALGfipipdfkdkgSYVESSTKQYDELAFKYLSWALFPLLAGYAVYSLLYLEHKGWYSWVLNMLYGFLLTFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIESDRNPDFDNSHALIWKHDNLKLKNNGSIYLHVYFTKPVSQFGDTPQSLKTKLTAtttihgvkqlnkfkrlkfqrtqnlltgqteasleeIKRWIYKIDPTRVNEFGYSAAMENnaessnavdsnkeqQAIKsaeekkke
HIFDPYCFQILNFYQTAAIYKPAVFFNDYWNHAAIIDIQFWNNRQSLEGLsvrsvffnvfqsvvvLLYVLDNDANTLIRISCFVSVGIELWKINKVLDISFAAGRKALGFIPIPDFKDKGSYVESSTKQYDELAFKYLSWALFPLLAGYAVYSLLYLEHKGWYSWVLNMLYGFLLTFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIESDRNPDFDNSHALIWKHDNLKLKNNGSIYLHVYFTKPVSQFGDTPQSLKTKLTATTTIHGVKQLNKFKRLKFQRTQNLLTGQTEASLEEIKRWIYKIDPTRVNEFGYsaamennaessnaVDSNKEQQAIKSAEEKKKE
*IFDPYCFQILNFYQTAAIYKPAVFFNDYWNHAAIIDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKVLDISFAAGRKALGFIPIPDFKDKGSYVESSTKQYDELAFKYLSWALFPLLAGYAVYSLLYLEHKGWYSWVLNMLYGFLLTFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIESDRNPDFDNSHALIWKHDNLKLKNNGSIYLHVYFTKPVSQFGDTPQSLKTKLTATTTIHGVKQLNKFKRLKFQRTQNLLTGQTEASLEEIKRWIYKIDPTRVNEFGY********************************
*IFDPYCFQILNFYQTAAIYKPAVFFNDYWNHAAIIDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKVLDISFAAGRKALGFIPIPDFKD*****E*STKQYDELAFKYLSWALFPLLAGYAVYSLLYLEHKGWYSWVLNMLYGFLLTFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIESDRNPDFDNSHALIWKHDNLKLKNNGSIYLHVYFTKPVSQFGDTPQSLKTKLTATTTIHGVKQLNKFKRLKFQRTQNLLTGQTEASLEEIKRWIYKIDPTRVNEFGY********************************
HIFDPYCFQILNFYQTAAIYKPAVFFNDYWNHAAIIDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKVLDISFAAGRKALGFIPIPDFKDKGSYVESSTKQYDELAFKYLSWALFPLLAGYAVYSLLYLEHKGWYSWVLNMLYGFLLTFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIESDRNPDFDNSHALIWKHDNLKLKNNGSIYLHVYFTKPVSQFGDTPQSLKTKLTATTTIHGVKQLNKFKRLKFQRTQNLLTGQTEASLEEIKRWIYKIDPTRVNEFGYSAAMEN**************************
HIFDPYCFQILNFYQTAAIYKPAVFFNDYWNHAAIIDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKVLDISFAAGRKALGFIPIPDFKDKGSYVESSTKQYDELAFKYLSWALFPLLAGYAVYSLLYLEHKGWYSWVLNMLYGFLLTFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIESDRNPDFDNSHALIWKHDNLKLKNNGSIYLHVYFTKPVSQFGDTPQSLKTKLTATTTIHGVKQLNKFKRLKFQRTQNLLTGQTEASLEEIKRWIYKIDPTRVNEFGYSAAMEN**************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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HIFDPYCFQILNFYQTAAIYKPAVFFNDYWNHAAIIDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKVLDISFAAGRKALGFIPIPDFKDKGSYVESSTKQYDELAFKYLSWALFPLLAGYAVYSLLYLEHKGWYSWVLNMLYGFLLTFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIESDRNPDFDNSHALIWKHDNLKLKNNGSIYLHVYFTKPVSQFGDTPQSLKTKLTATTTIHGVKQLNKFKRLKFQRTQNLLTGQTEASLEEIKRWIYKIDPTRVNEFGYSAAMENNAESSNAVDSNKEQQAIKSAEEKKKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query383 2.2.26 [Sep-21-2011]
Q2NL17670 Cleft lip and palate tran yes N/A 0.326 0.186 0.660 1e-55
Q8VBZ3664 Cleft lip and palate tran yes N/A 0.391 0.225 0.653 1e-55
O96005669 Cleft lip and palate tran yes N/A 0.391 0.224 0.647 3e-54
Q6DEL2631 Cleft lip and palate tran yes N/A 0.326 0.198 0.614 2e-51
Q54RJ1619 CLPTM1-like membrane prot yes N/A 0.355 0.219 0.430 3e-26
Q8BXA5539 Cleft lip and palate tran no N/A 0.352 0.250 0.402 1e-22
Q5R7B1538 Cleft lip and palate tran no N/A 0.352 0.250 0.388 4e-22
Q96KA5538 Cleft lip and palate tran no N/A 0.349 0.249 0.393 5e-22
Q6DHU1538 Cleft lip and palate tran no N/A 0.357 0.254 0.366 7e-21
A2VE61538 Cleft lip and palate tran no N/A 0.352 0.250 0.368 2e-20
>sp|Q2NL17|CLPT1_BOVIN Cleft lip and palate transmembrane protein 1 homolog OS=Bos taurus GN=CLPTM1 PE=2 SV=1 Back     alignment and function desciption
 Score =  217 bits (553), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/153 (66%), Positives = 122/153 (79%)

Query: 37  DIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKV 96
           DIQFWN+RQSLEGLSVRSVFF VFQS VVLLY+LDN+ N ++++S F+ V I+LWKI KV
Sbjct: 378 DIQFWNSRQSLEGLSVRSVFFGVFQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKV 437

Query: 97  LDISFAAGRKALGFIPIPDFKDKGSYVESSTKQYDELAFKYLSWALFPLLAGYAVYSLLY 156
           +D+      K  G +P P F+DK +YVESSTK YD++AF+YLSW LFPLL  YAVYSLLY
Sbjct: 438 MDVRLDREHKVAGLLPRPTFQDKSTYVESSTKVYDDMAFRYLSWILFPLLGCYAVYSLLY 497

Query: 157 LEHKGWYSWVLNMLYGFLLTFGTTSLEDGDIVN 189
           LEHKGWYSWVL+MLYGFLLTFG  ++     +N
Sbjct: 498 LEHKGWYSWVLSMLYGFLLTFGFITMTPQLFIN 530
May play a role in T-cell development.
Bos taurus (taxid: 9913)
>sp|Q8VBZ3|CLPT1_MOUSE Cleft lip and palate transmembrane protein 1 homolog OS=Mus musculus GN=Clptm1 PE=1 SV=1 Back     alignment and function description
>sp|O96005|CLPT1_HUMAN Cleft lip and palate transmembrane protein 1 OS=Homo sapiens GN=CLPTM1 PE=1 SV=1 Back     alignment and function description
>sp|Q6DEL2|CLPT1_DANRE Cleft lip and palate transmembrane protein 1 homolog OS=Danio rerio GN=clptm1 PE=2 SV=1 Back     alignment and function description
>sp|Q54RJ1|CNRB_DICDI CLPTM1-like membrane protein cnrB OS=Dictyostelium discoideum GN=cnrB PE=3 SV=1 Back     alignment and function description
>sp|Q8BXA5|CLP1L_MOUSE Cleft lip and palate transmembrane protein 1-like protein OS=Mus musculus GN=Clptm1l PE=2 SV=1 Back     alignment and function description
>sp|Q5R7B1|CLP1L_PONAB Cleft lip and palate transmembrane protein 1-like protein OS=Pongo abelii GN=CLPTM1L PE=2 SV=1 Back     alignment and function description
>sp|Q96KA5|CLP1L_HUMAN Cleft lip and palate transmembrane protein 1-like protein OS=Homo sapiens GN=CLPTM1L PE=1 SV=1 Back     alignment and function description
>sp|Q6DHU1|CLP1L_DANRE Cleft lip and palate transmembrane protein 1-like protein OS=Danio rerio GN=clptm1l PE=2 SV=1 Back     alignment and function description
>sp|A2VE61|CLP1L_BOVIN Cleft lip and palate transmembrane protein 1-like protein OS=Bos taurus GN=CLPTM1L PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
156547325 627 PREDICTED: cleft lip and palate transmem 0.352 0.215 0.774 2e-59
322792762 608 hypothetical protein SINV_00783 [Solenop 0.300 0.189 0.760 3e-59
383847697 649 PREDICTED: cleft lip and palate transmem 0.289 0.171 0.753 3e-59
307170575 640 Cleft lip and palate transmembrane prote 0.365 0.218 0.753 8e-59
307212218 642 Cleft lip and palate transmembrane prote 0.352 0.210 0.767 1e-58
332028582 610 Cleft lip and palate transmembrane prote 0.289 0.181 0.746 2e-58
193598925 618 PREDICTED: cleft lip and palate transmem 0.378 0.234 0.725 2e-58
380015531 647 PREDICTED: cleft lip and palate transmem 0.284 0.168 0.739 2e-57
328777673 647 PREDICTED: cleft lip and palate transmem 0.284 0.168 0.739 2e-57
340712854 638 PREDICTED: cleft lip and palate transmem 0.281 0.169 0.746 3e-57
>gi|156547325|ref|XP_001602053.1| PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 110/142 (77%), Positives = 123/142 (86%)

Query: 37  DIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKV 96
           DIQFWNNR+SLEGLSVRSVFFNVFQS+VVLLYVLDN+ NTL+RISC + + IE+WKINKV
Sbjct: 375 DIQFWNNRKSLEGLSVRSVFFNVFQSLVVLLYVLDNETNTLVRISCGIGLLIEIWKINKV 434

Query: 97  LDISFAAGRKALGFIPIPDFKDKGSYVESSTKQYDELAFKYLSWALFPLLAGYAVYSLLY 156
           +DI      K LG  P   F+DKGSY ESSTK+YD LAFKYLSWAL+PLL GYA+YSL+Y
Sbjct: 435 VDIKVDRSTKVLGIFPKLTFQDKGSYSESSTKEYDRLAFKYLSWALYPLLGGYAIYSLMY 494

Query: 157 LEHKGWYSWVLNMLYGFLLTFG 178
           LEHKGWYSWVLNMLYGFLLTFG
Sbjct: 495 LEHKGWYSWVLNMLYGFLLTFG 516

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322792762|gb|EFZ16595.1| hypothetical protein SINV_00783 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|383847697|ref|XP_003699489.1| PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Megachile rotundata] Back     alignment and taxonomy information
>gi|307170575|gb|EFN62769.1| Cleft lip and palate transmembrane protein 1-like protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307212218|gb|EFN88050.1| Cleft lip and palate transmembrane protein 1-like protein [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332028582|gb|EGI68619.1| Cleft lip and palate transmembrane protein 1-like protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|193598925|ref|XP_001945647.1| PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|380015531|ref|XP_003691754.1| PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Apis florea] Back     alignment and taxonomy information
>gi|328777673|ref|XP_001122740.2| PREDICTED: cleft lip and palate transmembrane protein 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|340712854|ref|XP_003394968.1| PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
UNIPROTKB|F1RM47663 CLPTM1 "Uncharacterized protei 0.399 0.230 0.581 3.5e-58
UNIPROTKB|Q2NL17670 CLPTM1 "Cleft lip and palate t 0.399 0.228 0.575 5.7e-58
MGI|MGI:1927155664 Clptm1 "cleft lip and palate a 0.399 0.230 0.568 5.7e-58
RGD|1310959664 Clptm1 "cleft lip and palate a 0.399 0.230 0.562 1.2e-57
UNIPROTKB|B4DDS3567 CLPTM1 "Cleft lip and palate t 0.399 0.269 0.562 8.1e-57
UNIPROTKB|O96005669 CLPTM1 "Cleft lip and palate t 0.399 0.228 0.562 9.4e-57
ZFIN|ZDB-GENE-040801-265631 clptm1 "cleft lip and palate a 0.399 0.242 0.542 1.3e-54
WB|WBGene00011302618 R166.2 [Caenorhabditis elegans 0.399 0.247 0.522 1.2e-52
WB|WBGene00016469602 C36B7.6 [Caenorhabditis elegan 0.399 0.254 0.496 1.5e-49
UNIPROTKB|F1N779574 CLPTM1 "Cleft lip and palate t 0.328 0.219 0.563 1.4e-40
UNIPROTKB|F1RM47 CLPTM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 480 (174.0 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
 Identities = 89/153 (58%), Positives = 108/153 (70%)

Query:    37 DIQFWNNRQSLEGLXXXXXXXXXXXXXXXLLYVLDNDANTLIRISCFVSVGIELWKINKV 96
             DIQFWN+RQSLEGL               LLY+LDN+ N ++++S F+ V I+LWKI KV
Sbjct:   377 DIQFWNSRQSLEGLSVRSVFFGVFQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKV 436

Query:    97 LDISFAAGRKALGFIPIPDFKDKGSYVESSTKQYDELAFKYLSWALFPLLAGYAVYSLLY 156
             +D+      K  G  P P FKDK +YVESSTK YD++AF+YLSW LFPLL  YAVYSLLY
Sbjct:   437 MDVRLDREHKVAGLFPRPTFKDKSTYVESSTKVYDDMAFRYLSWILFPLLGCYAVYSLLY 496

Query:   157 LEHKGWYSWVLNMLYGFLLTFGTTSLEDGDIVN 189
             LEHKGWYSWVL+MLYGFLLTFG  ++     +N
Sbjct:   497 LEHKGWYSWVLSMLYGFLLTFGFITMTPQLFIN 529
GO:0033081 "regulation of T cell differentiation in thymus" evidence=IEA
GO:0009897 "external side of plasma membrane" evidence=IEA
UNIPROTKB|Q2NL17 CLPTM1 "Cleft lip and palate transmembrane protein 1 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1927155 Clptm1 "cleft lip and palate associated transmembrane protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310959 Clptm1 "cleft lip and palate associated transmembrane protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|B4DDS3 CLPTM1 "Cleft lip and palate transmembrane protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O96005 CLPTM1 "Cleft lip and palate transmembrane protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-265 clptm1 "cleft lip and palate associated transmembrane protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00011302 R166.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00016469 C36B7.6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1N779 CLPTM1 "Cleft lip and palate transmembrane protein 1 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
pfam05602437 pfam05602, CLPTM1, Cleft lip and palate transmembr 2e-49
cd01086238 cd01086, MetAP1, Methionine Aminopeptidase 1 1e-24
PRK05716252 PRK05716, PRK05716, methionine aminopeptidase; Val 2e-23
PRK12896255 PRK12896, PRK12896, methionine aminopeptidase; Rev 1e-21
PLN03158396 PLN03158, PLN03158, methionine aminopeptidase; Pro 2e-20
COG0024255 COG0024, Map, Methionine aminopeptidase [Translati 3e-17
pfam00557208 pfam00557, Peptidase_M24, Metallopeptidase family 5e-15
TIGR00500247 TIGR00500, met_pdase_I, methionine aminopeptidase, 4e-14
cd01066207 cd01066, APP_MetAP, A family including aminopeptid 1e-13
PRK12318291 PRK12318, PRK12318, methionine aminopeptidase; Pro 5e-13
PRK08671291 PRK08671, PRK08671, methionine aminopeptidase; Pro 3e-08
cd01092208 cd01092, APP-like, Similar to Prolidase and Aminop 8e-08
COG0006384 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid 9e-08
pfam05602 437 pfam05602, CLPTM1, Cleft lip and palate transmembr 9e-06
cd01088291 cd01088, MetAP2, Methionine Aminopeptidase 2 3e-05
PRK12897248 PRK12897, PRK12897, methionine aminopeptidase; Rev 3e-04
TIGR00501295 TIGR00501, met_pdase_II, methionine aminopeptidase 4e-04
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1 (CLPTM1) Back     alignment and domain information 
 Score =  172 bits (437), Expect = 2e-49
 Identities = 64/122 (52%), Positives = 86/122 (70%), Gaps = 6/122 (4%)

Query: 37  DIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKV 96
           DIQFW N++S+ GLSVRS+  NVF  +++ LY+LDN+ + +I +S  + + IE WKI K 
Sbjct: 320 DIQFWRNKKSMVGLSVRSILANVFCQIIIFLYLLDNETSWMILVSQGIGLLIEAWKITKA 379

Query: 97  LDISFAAGRKALGFIPIPDFKDKG--SYVESSTKQYDELAFKYLSWALFPLLAGYAVYSL 154
           + +     R   GFIP  +F+DKG  S  ES TK+YD++AFKYLS+AL PLL  YAVYSL
Sbjct: 380 VKVRI---RWR-GFIPYIEFEDKGKLSEYESKTKEYDDIAFKYLSYALVPLLVAYAVYSL 435

Query: 155 LY 156
           LY
Sbjct: 436 LY 437

This family consists of several eukaryotic cleft lip and palate transmembrane protein 1 sequences. Cleft lip with or without cleft palate is a common birth defect that is genetically complex. The nonsyndromic forms have been studied genetically using linkage and candidate-gene association studies with only partial success in defining the loci responsible for orofacial clefting. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family. This family also contains the human cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis. Length = 437
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1 Back     alignment and domain information
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated Back     alignment and domain information
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed Back     alignment and domain information
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional Back     alignment and domain information
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24 Back     alignment and domain information
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I Back     alignment and domain information
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P, aminopeptidase M, and prolidase Back     alignment and domain information
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional Back     alignment and domain information
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional Back     alignment and domain information
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P Back     alignment and domain information
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1 (CLPTM1) Back     alignment and domain information
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2 Back     alignment and domain information
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed Back     alignment and domain information
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 383
KOG2489|consensus592 100.0
PF05602438 CLPTM1: Cleft lip and palate transmembrane protein 100.0
COG0006384 PepP Xaa-Pro aminopeptidase [Amino acid transport 99.97
PRK10879438 proline aminopeptidase P II; Provisional 99.95
TIGR02993391 ectoine_eutD ectoine utilization protein EutD. Mem 99.95
PRK15173323 peptidase; Provisional 99.95
PRK09795361 aminopeptidase; Provisional 99.95
PRK14575406 putative peptidase; Provisional 99.95
PRK14576405 putative endopeptidase; Provisional 99.94
KOG2737|consensus492 99.94
KOG2414|consensus488 99.92
PRK13607443 proline dipeptidase; Provisional 99.91
PRK07281286 methionine aminopeptidase; Reviewed 99.91
PRK12897248 methionine aminopeptidase; Reviewed 99.9
cd01090228 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. 99.9
PLN03158396 methionine aminopeptidase; Provisional 99.89
PRK12318291 methionine aminopeptidase; Provisional 99.89
TIGR00500247 met_pdase_I methionine aminopeptidase, type I. Met 99.89
PRK05716252 methionine aminopeptidase; Validated 99.87
cd01087243 Prolidase Prolidase. E.C. 3.4.13.9. Also known as 99.87
cd01086238 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18 99.87
KOG2738|consensus369 99.86
PRK12896255 methionine aminopeptidase; Reviewed 99.85
cd01091243 CDC68-like Related to aminopeptidase P and aminope 99.84
cd01089228 PA2G4-like Related to aminopepdidase M, this famil 99.82
cd01085224 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also 99.82
COG0024255 Map Methionine aminopeptidase [Translation, riboso 99.81
cd01092208 APP-like Similar to Prolidase and Aminopeptidase P 99.81
PF00557207 Peptidase_M24: Metallopeptidase family M24 This Pr 99.74
cd01066207 APP_MetAP A family including aminopeptidase P, ami 99.72
TIGR00501295 met_pdase_II methionine aminopeptidase, type II. M 99.7
PRK08671291 methionine aminopeptidase; Provisional 99.69
TIGR00495389 crvDNA_42K 42K curved DNA binding protein. Protein 99.68
cd01088291 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18 99.68
PTZ00053470 methionine aminopeptidase 2; Provisional 99.63
KOG1189|consensus 960 98.97
KOG2413|consensus606 98.91
COG5406 1001 Nucleosome binding factor SPN, SPT16 subunit [Tran 98.44
KOG2776|consensus398 97.98
KOG2489|consensus 592 97.97
PF05602 438 CLPTM1: Cleft lip and palate transmembrane protein 97.28
KOG2775|consensus397 95.74
PLN03158396 methionine aminopeptidase; Provisional 92.36
PRK05716252 methionine aminopeptidase; Validated 90.72
cd01086238 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18 90.59
PRK12896255 methionine aminopeptidase; Reviewed 88.48
KOG2738|consensus369 85.08
cd01088 291 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18 83.29
PF00557207 Peptidase_M24: Metallopeptidase family M24 This Pr 83.07
>KOG2489|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.4e-51  Score=409.85  Aligned_cols=186  Identities=45%  Similarity=0.718  Sum_probs=182.3

Q ss_pred             HHHHHHhHHhhcchhhhhhhhhhhhcccccccccCCCcccchhhHHHHhhhheeeEEEEEecCCCccEeeeeccccccce
Q psy9914          10 ILNFYQTAAIYKPAVFFNDYWNHAAIIDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIE   89 (383)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~afknDi~fW~~~~~~~gls~r~~~~~~~~~~ii~lyl~d~~ts~~i~~~~~~g~~ie   89 (383)
                      --|.|++|+|.++|.||..|.|||||||||||++||||+|||+||++||||||+||||||+||+||+||++|+|||++||
T Consensus       312 eTN~yLL~vT~fVS~lH~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYllDneTs~mVlvs~gvG~~IE  391 (592)
T KOG2489|consen  312 ETNPYLLAVTIFVSILHSVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLLDNETSFMVLVSVGVGLLIE  391 (592)
T ss_pred             cCchhhhhHHHHHHHHHHHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhheeecCCccEEEEEeccceeeee
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeeeeccchHHhhccCCCCceeechhHHHHHHHHHHHHHHHHhccccccccchhhhhhhhhhcccCcchhhhcc
Q psy9914          90 LWKINKVLDISFAAGRKALGFIPIPDFKDKGSYVESSTKQYDELAFKYLSWALFPLLAGYAVYSLLYLEHKGWYSWVLNM  169 (383)
Q Consensus        90 ~wkvek~~~lsv~~~~~L~~~lP~~~f~D~s~lIe~lRke~DEia~kal~~~~~pl~~g~~~~sL~~~~~~GwySw~~~~  169 (383)
                      +||+.|+.++++++.+...+.+|+..|.|.++++|+.||++|.+|+||++++.+|+++|+++|||+|.+|+|||||+++|
T Consensus       392 ~WKi~K~m~v~id~~g~i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~  471 (592)
T KOG2489|consen  392 LWKIKKAMKVEIDWSGLIPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNS  471 (592)
T ss_pred             eeecceEEEEEEecccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCccCCcCCCeEEEEEeee
Q psy9914         170 LYGFLLTFGTTSLEDGDIVNVDVTVY  195 (383)
Q Consensus       170 sf~~I~a~G~~~L~~Gd~V~iDlg~~  195 (383)
                      +.+++|+|||..|.||.+|+++++..
T Consensus       472 l~~~vy~FGFi~M~PQLFINYKLKSV  497 (592)
T KOG2489|consen  472 LYNGVYAFGFIFMLPQLFINYKLKSV  497 (592)
T ss_pred             HHhHHHHHHHHHhChHHHhhhhhhhh
Confidence            99999999999999999999999874

>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects Back     alignment and domain information
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10879 proline aminopeptidase P II; Provisional Back     alignment and domain information
>TIGR02993 ectoine_eutD ectoine utilization protein EutD Back     alignment and domain information
>PRK15173 peptidase; Provisional Back     alignment and domain information
>PRK09795 aminopeptidase; Provisional Back     alignment and domain information
>PRK14575 putative peptidase; Provisional Back     alignment and domain information
>PRK14576 putative endopeptidase; Provisional Back     alignment and domain information
>KOG2737|consensus Back     alignment and domain information
>KOG2414|consensus Back     alignment and domain information
>PRK13607 proline dipeptidase; Provisional Back     alignment and domain information
>PRK07281 methionine aminopeptidase; Reviewed Back     alignment and domain information
>PRK12897 methionine aminopeptidase; Reviewed Back     alignment and domain information
>cd01090 Creatinase Creatine amidinohydrolase Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>PRK12318 methionine aminopeptidase; Provisional Back     alignment and domain information
>TIGR00500 met_pdase_I methionine aminopeptidase, type I Back     alignment and domain information
>PRK05716 methionine aminopeptidase; Validated Back     alignment and domain information
>cd01087 Prolidase Prolidase Back     alignment and domain information
>cd01086 MetAP1 Methionine Aminopeptidase 1 Back     alignment and domain information
>KOG2738|consensus Back     alignment and domain information
>PRK12896 methionine aminopeptidase; Reviewed Back     alignment and domain information
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor Back     alignment and domain information
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4 Back     alignment and domain information
>cd01085 APP X-Prolyl Aminopeptidase 2 Back     alignment and domain information
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P Back     alignment and domain information
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase Back     alignment and domain information
>TIGR00501 met_pdase_II methionine aminopeptidase, type II Back     alignment and domain information
>PRK08671 methionine aminopeptidase; Provisional Back     alignment and domain information
>TIGR00495 crvDNA_42K 42K curved DNA binding protein Back     alignment and domain information
>cd01088 MetAP2 Methionine Aminopeptidase 2 Back     alignment and domain information
>PTZ00053 methionine aminopeptidase 2; Provisional Back     alignment and domain information
>KOG1189|consensus Back     alignment and domain information
>KOG2413|consensus Back     alignment and domain information
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] Back     alignment and domain information
>KOG2776|consensus Back     alignment and domain information
>KOG2489|consensus Back     alignment and domain information
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects Back     alignment and domain information
>KOG2775|consensus Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>PRK05716 methionine aminopeptidase; Validated Back     alignment and domain information
>cd01086 MetAP1 Methionine Aminopeptidase 1 Back     alignment and domain information
>PRK12896 methionine aminopeptidase; Reviewed Back     alignment and domain information
>KOG2738|consensus Back     alignment and domain information
>cd01088 MetAP2 Methionine Aminopeptidase 2 Back     alignment and domain information
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
3iu7_A288 M. Tuberculosis Methionine Aminopeptidase With Mn I 6e-12
1y1n_A291 Identification Of Sh3 Motif In M. Tuberculosis Meth 6e-12
3pka_A285 M. Tuberculosis Metap With Bengamide Analog Y02, In 6e-12
4fli_A326 Human Metap1 With Bengamide Analog Y16, In Mn Form 8e-12
2b3h_A329 Crystal Structure Of Human Methionine Aminopeptidas 9e-12
3ror_A291 Crystal Structure Of C105s Mutant Of Mycobacterium 9e-12
2g6p_A304 Crystal Structure Of Truncated (Delta 1-89) Human M 1e-11
2p99_A261 E. Coli Methionine Aminopeptidase Monometalated Wit 5e-10
4mat_A278 E.Coli Methionine Aminopeptidase His79ala Mutant Le 5e-10
2gu4_A263 E. Coli Methionine Aminopeptidase In Complex With N 5e-10
2gtx_A261 Structural Basis Of Catalysis By Mononuclear Methio 5e-10
3mat_A265 E.coli Methionine Aminopeptidase Transition-state I 6e-10
2p98_A262 E. Coli Methionine Aminopeptidase Monometalated Wit 6e-10
1xnz_A264 Crystal Structure Of Mn(Ii) Form Of E. Coli. Methio 6e-10
2gg0_A263 Novel Bacterial Methionine Aminopeptidase Inhibitor 6e-10
2mat_A264 E.Coli Methionine Aminopeptidase At 1.9 Angstrom Re 6e-10
4a6v_A265 X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn 6e-10
1c27_A263 E. Coli Methionine Aminopeptidase:norleucine Phosph 6e-10
4fuk_A337 Aminopeptidase From Trypanosoma Brucei Length = 337 5e-09
1o0x_A262 Crystal Structure Of Methionine Aminopeptidase (Tm1 1e-08
3mx6_A262 Crystal Structure Of Methionine Aminopeptidase From 2e-08
3mr1_A252 Crystal Structure Of Methionine Aminopeptidase From 2e-08
1qxw_A252 Crystal Structure Of Staphyloccocus Aureus In Compl 8e-07
3s6b_A368 Crystal Structure Of Methionine Aminopeptidase 1b F 3e-06
3tav_A286 Crystal Structure Of A Methionine Aminopeptidase Fr 6e-06
2dfi_A301 Crystal Structure Of Pf-Map(1-292)-C Length = 301 8e-05
1xgs_A295 Methionine Aminopeptidase From Hyperthermophile Pyr 8e-05
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn Inhibitor A02 Length = 288 Back     alignment and structure 
Iteration: 1

 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 21/163 (12%)
Query: 87  GIELW-KINKVLDISFAAGRKALGFIPIPDFKDKGSYVES--STKQYDELAFKYL-SWAL 142
           G E W +  +V++    AGR A G +      + G  V    +T + D +A +YL     
Sbjct: 39  GSEPWVQTPEVIEKMRVAGRIAAGAL-----AEAGKAVAPGVTTDELDRIAHEYLVDNGA 93
Query: 143 FPLLAGYAVYSLLYLEHKGWYSWVLNMLYGFLL--TFGTTSLEDGDIVNVDVTVYLNGYH 200
           +P   GY          KG+       L   +      +T + DGDIVN+DVT Y+ G H
Sbjct: 94  YPSTLGY----------KGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVH 143
Query: 201 GDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTI 243
           GD +ATF  G+V    + LV+  ++A   AI+ VKPG   S I
Sbjct: 144 GDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVI 186
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine Aminopeptidase Suggests A Mode Of Interaction With The Ribosome Length = 291 Back     alignment and structure
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn Form Length = 285 Back     alignment and structure
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form Length = 326 Back     alignment and structure
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type I With A Third Cobalt In The Active Site Length = 329 Back     alignment and structure
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium Tuberculosis Methionine Aminopeptidase Length = 291 Back     alignment and structure
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human Methionine Aminopeptidase Type 1 In Complex With Pyridyl Pyrimidine Derivative Length = 304 Back     alignment and structure
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With Inhibitor Ye6 Length = 261 Back     alignment and structure
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant Length = 278 Back     alignment and structure
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1: 0.5, Di-Metalated Length = 263 Back     alignment and structure
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine Aminopeptidase Length = 261 Back     alignment and structure
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state Inhibitor Complex Length = 265 Back     alignment and structure
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With Inhibitor Ye7 Length = 262 Back     alignment and structure
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine Aminopeptidase In Complex With 5-(2-Chlorophenyl)furan-2- Carboxylic Acid Length = 264 Back     alignment and structure
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors Length = 263 Back     alignment and structure
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom Resolution Length = 264 Back     alignment and structure
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn Complexes Length = 265 Back     alignment and structure
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate Complex Length = 263 Back     alignment and structure
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei Length = 337 Back     alignment and structure
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478) From Thermotoga Maritima At 1.90 A Resolution Length = 262 Back     alignment and structure
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From Ricketts Prowazekii Bound To Methionine Length = 262 Back     alignment and structure
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From Ricketts Prowazekii Length = 252 Back     alignment and structure
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With An Aminoketone Inhibitor 54135. Length = 252 Back     alignment and structure
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From Plasmodium Falciparum, Pf10_0150 Length = 368 Back     alignment and structure
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From Mycobacterium Abscessus Length = 286 Back     alignment and structure
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C Length = 301 Back     alignment and structure
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus Furiosus Length = 295 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
3pka_A285 Methionine aminopeptidase; hydrolase-hydrolase inh 1e-28
2b3h_A329 Methionine aminopeptidase 1; hydrolase, metallopro 1e-27
3s6b_A368 Methionine aminopeptidase; malaria, proteolysis, " 6e-26
2gg2_A263 Methionine aminopeptidase; PITA-bread fold, MAP in 1e-24
3mx6_A262 Methionine aminopeptidase; seattle structural geno 1e-24
1qxy_A252 Methionyl aminopeptidase; PITA bread fold, hydrola 3e-22
1o0x_A262 Methionine aminopeptidase; TM1478, structural geno 4e-21
3tb5_A264 Methionine aminopeptidase; hydrolase, metalloprote 7e-21
3tav_A286 Methionine aminopeptidase; ssgcid, seattle structu 9e-21
2q8k_A401 Proliferation-associated protein 2G4; EBP1, PA2G4, 8e-15
1xgs_A295 Methionine aminopeptidase; hyperthermophIle; 1.75A 3e-14
2nw5_A360 Methionine aminopeptidase 2; metap2, structural ge 7e-11
1b6a_A478 Methionine aminopeptidase; angiogenesis inhibitor; 3e-10
1kp0_A402 Creatine amidinohydrolase; alpha betal, 3-layer(AB 2e-09
1chm_A401 Creatine amidinohydrolase; creatinase; 1.90A {Pseu 2e-09
1wn1_A356 Dipeptidase; prolidase, cobalt(II), structural gen 5e-09
1wy2_A351 XAA-Pro dipeptidase; structural genomics, prolidas 7e-09
3q6d_A356 Proline dipeptidase; structural genomics, csgid, c 2e-08
2zsg_A359 Aminopeptidase P, putative; hydrolase; 1.65A {Ther 2e-08
4ege_A378 Dipeptidase PEPE; structural genomics, seattle str 3e-08
4b28_A470 Metallopeptidase, family M24, putative; lyase, ime 3e-07
3cb6_A444 FACT complex subunit SPT16; peptidase homology dom 3e-04
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A Length = 285 Back     alignment and structure
 Score =  111 bits (281), Expect = 1e-28
 Identities = 31/66 (46%), Positives = 42/66 (63%)

Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
            +T + DGDIVN+DVT Y+ G HGD +ATF  G+V    + LV+  ++A   AI+ VKPG
Sbjct: 118 DSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPG 177

Query: 238 EYFSTI 243
              S I
Sbjct: 178 RALSVI 183
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A* Length = 329 Back     alignment and structure
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum} Length = 368 Back     alignment and structure
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ... Length = 263 Back     alignment and structure
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A Length = 262 Back     alignment and structure
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A* Length = 252 Back     alignment and structure
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1 Length = 262 Back     alignment and structure
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis} Length = 264 Back     alignment and structure
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus} Length = 286 Back     alignment and structure
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A Length = 401 Back     alignment and structure
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A Length = 295 Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478 Back     alignment and structure
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Length = 402 Back     alignment and structure
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Length = 401 Back     alignment and structure
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A Length = 356 Back     alignment and structure
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A Length = 351 Back     alignment and structure
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Length = 356 Back     alignment and structure
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Length = 359 Back     alignment and structure
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans} Length = 378 Back     alignment and structure
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Length = 470 Back     alignment and structure
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Length = 444 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
3ig4_A427 XAA-Pro aminopeptidase; csgid, hydrolase, struct g 99.96
3q6d_A356 Proline dipeptidase; structural genomics, csgid, c 99.96
4fkc_A377 XAA-Pro aminopeptidase; PITA-bread structure, prol 99.96
2zsg_A359 Aminopeptidase P, putative; hydrolase; 1.65A {Ther 99.96
1wy2_A351 XAA-Pro dipeptidase; structural genomics, prolidas 99.95
4ege_A378 Dipeptidase PEPE; structural genomics, seattle str 99.95
1wn1_A356 Dipeptidase; prolidase, cobalt(II), structural gen 99.95
2v3z_A440 XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proli 99.95
4fuk_A337 Methionine aminopeptidase; structural genomics con 99.95
2iw2_A494 XAA-Pro dipeptidase; metallocarboxypeptidase, dise 99.95
3tb5_A264 Methionine aminopeptidase; hydrolase, metalloprote 99.94
1chm_A401 Creatine amidinohydrolase; creatinase; 1.90A {Pseu 99.94
3rva_A451 Organophosphorus acid anhydrolase; PITA-bread fold 99.94
1kp0_A402 Creatine amidinohydrolase; alpha betal, 3-layer(AB 99.93
4b28_A470 Metallopeptidase, family M24, putative; lyase, ime 99.93
3mx6_A262 Methionine aminopeptidase; seattle structural geno 99.93
3l24_A517 XAA-Pro dipeptidase; PITA-bread, detoxification, h 99.92
3biq_A467 FACT complex subunit SPT16; PITA-bread, aminopepti 99.92
1o0x_A262 Methionine aminopeptidase; TM1478, structural geno 99.91
3tav_A286 Methionine aminopeptidase; ssgcid, seattle structu 99.91
3cb6_A444 FACT complex subunit SPT16; peptidase homology dom 99.91
3pka_A285 Methionine aminopeptidase; hydrolase-hydrolase inh 99.91
1qxy_A252 Methionyl aminopeptidase; PITA bread fold, hydrola 99.91
2gg2_A263 Methionine aminopeptidase; PITA-bread fold, MAP in 99.91
2b3h_A329 Methionine aminopeptidase 1; hydrolase, metallopro 99.9
3s6b_A368 Methionine aminopeptidase; malaria, proteolysis, " 99.89
3ctz_A623 XAA-Pro aminopeptidase 1; PITA-bread fold, alterna 99.89
2q8k_A401 Proliferation-associated protein 2G4; EBP1, PA2G4, 99.84
1xgs_A295 Methionine aminopeptidase; hyperthermophIle; 1.75A 99.8
2nw5_A360 Methionine aminopeptidase 2; metap2, structural ge 99.73
3fm3_A358 Methionine aminopeptidase 2; metap2, structural ge 99.68
1b6a_A478 Methionine aminopeptidase; angiogenesis inhibitor; 99.67
4b6a_t 614 Probable metalloprotease ARX1; large ribosomal sub 98.29
3i7m_A140 XAA-Pro dipeptidase; structural genomics, APC64794 87.37
3o5v_A132 X-Pro dipeptidase; creatinase, N-terminal, PSI, MC 84.17
3ooo_A132 Proline dipeptidase; structural genomics, PSI-2, p 82.64
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis} Back     alignment and structure
Probab=99.96  E-value=4.1e-30  Score=261.56  Aligned_cols=223  Identities=17%  Similarity=0.237  Sum_probs=162.0

Q ss_pred             eeeccchHHhhccCCCCceeechhHHHHHH--HHHHHHHH--HHhcc-------ccccccchhhhhhhhh-----hcccC
Q psy9914          98 DISFAAGRKALGFIPIPDFKDKGSYVESST--KQYDELAF--KYLSW-------ALFPLLAGYAVYSLLY-----LEHKG  161 (383)
Q Consensus        98 ~lsv~~~~~L~~~lP~~~f~D~s~lIe~lR--ke~DEia~--kal~~-------~~~pl~~g~~~~sL~~-----~~~~G  161 (383)
                      .++...+..|++.+|..+++|.++++.++|  |+.+||+.  +|..+       +...+..|.+++++..     ....|
T Consensus       140 ~~~~~~~~~l~~~~~~~~~~~~~~~i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~i~pG~tE~el~~~~~~~~~~~G  219 (427)
T 3ig4_A          140 TKTLAFAKHVREQYPHVTIGNVYPNICELRVFKTDEEIEIIKEAIAVTKDGIYNVLKHAKADMMEYELEAQFDFTLKSSG  219 (427)
T ss_dssp             CHHHHHHHHHHHHCTTCEEEECHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEHHHHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHhhCCCCeEeEhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcC
Confidence            455667788889999999999999999999  77777777  23221       2223456777777531     22334


Q ss_pred             cchhhhccccccccccC-----------ccCCcCCCeEEEEEeeeecCEEeceeeeEee-CCCChHHHHHHHHHHHHHHH
Q psy9914         162 WYSWVLNMLYGFLLTFG-----------TTSLEDGDIVNVDVTVYLNGYHGDCSATFCV-GEVDASGKFLVNVAQQALHA  229 (383)
Q Consensus       162 wySw~~~~sf~~I~a~G-----------~~~L~~Gd~V~iDlg~~~~GY~sD~tRT~~v-G~~s~e~~~iy~~v~ea~~~  229 (383)
                          +.+.+|.+++++|           .++|++||+|++|+|+.++||+||+||||++ |+++++|+++|++|++||++
T Consensus       220 ----~~~~~f~~ivasG~n~~~~H~~~~~~~l~~GdlvliD~G~~~~gY~sDitRT~~v~G~~s~~~~~~y~~vl~a~~~  295 (427)
T 3ig4_A          220 ----IKHHAFNTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQIYNIVLNALKE  295 (427)
T ss_dssp             ----CCEESSCCEEEEGGGGGSTTCCCCCSEECTTCEEEEEECEEETTEECCEEEEEETTSCCCHHHHHHHHHHHHHHHH
T ss_pred             ----CCCCCCCCEEEECccccccccCcccccCCCCCEEEEEeeeEECcEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence                2334556666555           4889999999999999999999999999999 99999999999999999999


Q ss_pred             HHHhcCCCCChhhHhhccCC--------------------CCcCCCCceecccCCCc-----CCCceeecCeEEe-CCCC
Q psy9914         230 AISVVKPGEYFSTIESDRNP--------------------DFDNSHALIWKHDNLKL-----KNNGSIYLHVYFT-KPVS  283 (383)
Q Consensus       230 ai~~~kPG~~~~di~~~~~~--------------------~F~~~~~~~~h~~gl~~-----~n~~~L~~GmV~T-EPgi  283 (383)
                      +++++|||++++||++++++                    +|.|+   .+|..|+.+     .++.+|++||||| |||+
T Consensus       296 ~i~~~kpG~~~~di~~~a~~~i~~~~~~~G~~~~~~~~~~~~~Hg---~GH~iGl~vhe~~~~~~~~L~~GMV~tiEPgi  372 (427)
T 3ig4_A          296 TTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQEDEELSKYYYHG---VSHFLGLDTHDVGTYKDRVLEEGMVITIEPGL  372 (427)
T ss_dssp             HHHTCCTTCBTHHHHHHHHHHHHHHHHHHTSCSSGGGGGGTCCSC---SCCBCSSSSSCCCCCTTCBCCTTCEEEECCEE
T ss_pred             HHHHccCCCcHHHHHHHHHHHHHHhHhhcCCccCcchhhccCCCC---CCCcCCcCCCcCCCCCCCEeCCCCEEEECCEE
Confidence            99999999999999998542                    23332   224444421     4678999999999 9965


Q ss_pred             CCCCCCCCC-CCC--ceEEEEeeccccccchhhhhhccccCCCCCCCCCCHHHHHHHHhcCC--CCC
Q psy9914         284 QFGDTPQSL-KTK--LTATTTIHGVKQLNKFKRLKFQRTQNLLTGQTEASLEEIKRWIYKID--PTR  345 (383)
Q Consensus       284 y~G~~p~~~-~~~--~~~~~~~~~~k~Ln~y~k~k~~k~~nLL~~~~~~~~eeie~~~~~~~--~~~  345 (383)
                      |+   |+.+ +.+  .++.+|.+|++.||               ...|++.+|||++|++.+  |.+
T Consensus       373 y~---~~~g~GvriEd~vlVt~~G~e~LT---------------~~~pk~~~~IE~~m~~~~~~~~~  421 (427)
T 3ig4_A          373 YI---EEESIGIRIEDDILVTKDGHENLS---------------KDIIREVEEIEEFMRENNVNVKQ  421 (427)
T ss_dssp             EE---GGGTEEEECBEEEEECSSSEEETT---------------TTSCCSHHHHHHHHHHHCTTC--
T ss_pred             EE---CCCceEEEEeeEEEEeCCcCeECC---------------CCCCCCHHHHHHHHccCcccccc
Confidence            52   3321 111  22334446666444               357999999999999866  665
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Back     alignment and structure
>4fkc_A XAA-Pro aminopeptidase; PITA-bread structure, prolidase, hydrolase; 2.60A {Thermococcus sibiricus} Back     alignment and structure
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Back     alignment and structure
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A Back     alignment and structure
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans} Back     alignment and structure
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A Back     alignment and structure
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ... Back     alignment and structure
>4fuk_A Methionine aminopeptidase; structural genomics consortium, SGC, hydrolase; 1.75A {Trypanosoma brucei brucei} Back     alignment and structure
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A Back     alignment and structure
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis} Back     alignment and structure
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii} Back     alignment and structure
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Back     alignment and structure
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A Back     alignment and structure
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A* Back     alignment and structure
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Back     alignment and structure
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1 Back     alignment and structure
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus} Back     alignment and structure
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Back     alignment and structure
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A 3ror_A Back     alignment and structure
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A* Back     alignment and structure
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ... Back     alignment and structure
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A* Back     alignment and structure
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum} Back     alignment and structure
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens} Back     alignment and structure
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A Back     alignment and structure
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A Back     alignment and structure
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A* Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Back     alignment and structure
>4b6a_t Probable metalloprotease ARX1; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis} Back     alignment and structure
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} PDB: 3peb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 383
d2gg2a1262 d.127.1.1 (A:3-264) Methionine aminopeptidase {Esc 9e-06
d1pv9a2221 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal 5e-04
d1o0xa_249 d.127.1.1 (A:) Methionine aminopeptidase {Thermoto 0.001
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} Length = 262 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Creatinase/aminopeptidase
superfamily: Creatinase/aminopeptidase
family: Creatinase/aminopeptidase
domain: Methionine aminopeptidase
species: Escherichia coli [TaxId: 562]

 Score = 44.5 bits (104), Expect = 9e-06
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFS 241
           L+DGDIVN+DVTV  +G+HGD S  F VG+    G+ L  + Q++L+ A+ +VKPG    
Sbjct: 86  LKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLR 145

Query: 242 TI 243
            I
Sbjct: 146 EI 147
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 221 Back     information, alignment and structure
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} Length = 249 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
d1pv9a2221 Aminopeptidase P, C-terminal domain {Archaeon Pyro 99.9
d1chma2246 Creatinase, catalytic (C-terminal) domain {Pseudom 99.89
d1o0xa_249 Methionine aminopeptidase {Thermotoga maritima [Ta 99.89
d2gg2a1262 Methionine aminopeptidase {Escherichia coli [TaxId 99.88
d2v3za2264 Aminopeptidase P, C-terminal domain {Escherichia c 99.88
d1qxya_249 Methionine aminopeptidase {Staphylococcus aureus [ 99.87
d1xgsa2218 Methionine aminopeptidase {Archaeon Pyrococcus fur 99.84
d1b6aa2295 Methionine aminopeptidase {Human (Homo sapiens) [T 99.72
d1chma1155 Creatinase {Pseudomonas putida [TaxId: 303]} 90.72
d1kp0a1156 Creatinase {Actinobacillus sp. [TaxId: 41114]} 89.61
d1pv9a1117 Aminopeptidase P {Archaeon Pyrococcus furiosus [Ta 86.69
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Creatinase/aminopeptidase
superfamily: Creatinase/aminopeptidase
family: Creatinase/aminopeptidase
domain: Aminopeptidase P, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.90  E-value=1e-24  Score=198.85  Aligned_cols=135  Identities=22%  Similarity=0.281  Sum_probs=106.0

Q ss_pred             ccCccCCcCCCeEEEEEeeeecCEEeceeeeEeeCCCChHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhccCC------
Q psy9914         176 TFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIESDRNP------  249 (383)
Q Consensus       176 a~G~~~L~~Gd~V~iDlg~~~~GY~sD~tRT~~vG~~s~e~~~iy~~v~ea~~~ai~~~kPG~~~~di~~~~~~------  249 (383)
                      .++.+++++||+|++|+++.++||++|++|||++|+++++++++|++++++++++++++|||++++||+++.++      
T Consensus        70 ~~~~~~i~~gd~v~id~~~~~~gy~~d~~Rt~~vG~~~~~~~~~~~~~~~~~~~~~~~~kpG~~~~~v~~~~~~~~~~~g  149 (221)
T d1pv9a2          70 VASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYG  149 (221)
T ss_dssp             BCCSCBCCTTCEEEEEECEEETTEECCEEEEEESSSCCHHHHHHHHHHHHHHHHHHHHCCTTCBHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccceEEEecccccCccccCcceeeecCCccHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHhhhhhcc
Confidence            34568999999999999999999999999999999999999999999999999999999999999999998642      


Q ss_pred             ---CCcCC-----CCceecccCCCcCCCceeecCeEEe-CCCCCCCCCCCCCCCC--ceEEEEeeccccccchhh
Q psy9914         250 ---DFDNS-----HALIWKHDNLKLKNNGSIYLHVYFT-KPVSQFGDTPQSLKTK--LTATTTIHGVKQLNKFKR  313 (383)
Q Consensus       250 ---~F~~~-----~~~~~h~~gl~~~n~~~L~~GmV~T-EPgiy~G~~p~~~~~~--~~~~~~~~~~k~Ln~y~k  313 (383)
                         ++.|+     +..+|+.+.+...++.+|++||||+ ||++|.   |+.++.+  ....+|.+|++.||+++|
T Consensus       150 ~~~~~~~~~Ghg~g~~~~e~~~~~~~~~~~L~~gMv~~iep~~~~---~~~~g~r~Ed~v~Vte~G~e~Lt~~pr  221 (221)
T d1pv9a2         150 YGDYFIHSLGHGVGLEIHEWPRISQYDETVLKEGMVITIEPGIYI---PKLGGVRIEDTVLITENGAKRLTKTER  221 (221)
T ss_dssp             CGGGCCSCSEEECSSSSSEEEEESTTCCCBCCTTCEEEECCEEEE---TTTEEEECBEEEEECSSSEEESCCSCC
T ss_pred             cCCceeccccCCCCcccchhcccccCCCceeCCCcEEEECCEEEE---CCCCEEEEeEEEEECCCcceECCCCCC
Confidence               22221     1222222333455778999999999 995441   4443222  234556689999999876
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId: 41114]} Back     information, alignment and structure
>d1pv9a1 c.55.2.1 (A:8-124) Aminopeptidase P {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure