Psyllid ID: psy9917

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MAARLVTSATRLARRGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS
Secondary Structure (PSIPRED)
ccccccccccHHHHHcccccEEEEEEEccccEEccccEEEEEEEccccccccccccccHHcccccEEEEEEEcccEEEEEEEEccEEEEEccccEEEEEccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEEccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcHHHcEEEEEEccccEEEEEEEEcEEEccEccEccEEEcccccEEEEEccEEEEEEccccccEEEEEccEEEEEccccEEEEEEccEEcHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHEEEEccEEEEEccccEEEEEEccEEcHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MAARLVTSATRLARRGYADQMDFTLASGNKvfytnqnvkqvdvpsfsgafgilpnhvptlailkpgvitvyetegvsqkifvssgtitvnddssvqiiaeeahpvdsldasAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSsgtitvnddssvqiiaeeahpvdsldasAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS
Flexible Loop (DISEMBL)
maarlvtsatrlarrgyadQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSElssassetAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSElssassetaKAEAQIAVEVAEALVAAAS
Low Complexity Region (SEG)
MAARLVTSATRLARRGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVlskaqselssassetakaeaqiavevaeaLKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVlskaqselssassetakaeaqiavevaealvaaaS
Disordered region (IsUnstruct)
***********LARRGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII**************************************QIAVEVAEALKIFVSSGTITVNDDSSVQII*****************************************************
Disordered Region (DISOPRED)
**************RGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDV******************EAQIAVEVAEALKIFVSS**ITVNDDSSVQIIAEEAHPVDSLDASAAR*********************AQIAVEVAEALVAAA*
Disordered Region (DISEMBL)
MAARLVTSATRLARRGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAA**********************AQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAA*********************EAQIAVEVAEALVAAAS
Disordered Region (DISPRO)
*AARLVTSATRLARRGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAK*EAQIAVEVAEALVAA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAARLVTSATRLARRGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVxxxxxxxxxxxxxxxxxxxxxIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVxxxxxxxxxxxxxxxxxxxxxIAVEVAEALVAAAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q9D3D9	168	ATP synthase subunit delt	yes	N/A	0.579	0.755	0.590	7e-37
P35434	168	ATP synthase subunit delt	yes	N/A	0.579	0.755	0.574	5e-36
P05630	168	ATP synthase subunit delt	yes	N/A	0.575	0.75	0.555	2e-33
P30049	168	ATP synthase subunit delt	yes	N/A	0.584	0.761	0.539	2e-33
Q09544	163	ATP synthase subunit delt	yes	N/A	0.662	0.889	0.474	1e-31
Q92196	162	ATP synthase subunit delt	N/A	N/A	0.662	0.895	0.416	8e-22
P56525	165	ATP synthase subunit delt	N/A	N/A	0.666	0.884	0.368	1e-20
Q757N0	158	ATP synthase subunit delt	yes	N/A	0.607	0.841	0.424	6e-19
Q96252	203	ATP synthase subunit delt	yes	N/A	0.511	0.551	0.442	4e-18
Q55F42	170	ATP synthase subunit delt	yes	N/A	0.589	0.758	0.364	4e-17

>sp|Q9D3D9|ATPD_MOUSE ATP synthase subunit delta, mitochondrial OS=Mus musculus GN=Atp5d PE=1 SV=1

 Score =  153 bits (387), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 96/127 (75%)

Query: 20  QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQK 79
           QM FT AS  +VF+ + NVKQVDVP+ +GAFGIL +HVPTL +L+PG++ V+  +G + K
Sbjct: 37  QMSFTFASPTQVFFDSANVKQVDVPTLTGAFGILASHVPTLQVLRPGLVVVHTEDGTTTK 96

Query: 80  IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIA 139
            FVSSG++TVN DSSVQ++AEEA  +D LD  AAR  L KAQSELS A+ E A+AE QI 
Sbjct: 97  YFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQIR 156

Query: 140 VEVAEAL 146
           +E  EAL
Sbjct: 157 IEANEAL 163

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
Mus musculus (taxid: 10090)

>sp|P35434|ATPD_RAT ATP synthase subunit delta, mitochondrial OS=Rattus norvegicus GN=Atp5d PE=1 SV=2

 Score =  150 bits (380), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/127 (57%), Positives = 94/127 (74%)

Query: 20  QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQK 79
           QM FT AS  +VF+   NV+QVDVP+ +GAFGIL +HVPTL +L+PG++ V+  +G + K
Sbjct: 37  QMSFTFASPTQVFFDGANVRQVDVPTLTGAFGILASHVPTLQVLRPGLVMVHAEDGTTTK 96

Query: 80  IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIA 139
            FVSSG++TVN DSSVQ++AEE   +D LD  AAR  L KAQSELS A+ E A+AE QI 
Sbjct: 97  YFVSSGSVTVNADSSVQLLAEEVVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQIR 156

Query: 140 VEVAEAL 146
           +E  EAL
Sbjct: 157 IEANEAL 163

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Rattus norvegicus (taxid: 10116)

>sp|P05630|ATPD_BOVIN ATP synthase subunit delta, mitochondrial OS=Bos taurus GN=ATP5D PE=1 SV=2

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 92/126 (73%)

Query: 21  MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
           M FT AS  +VF+ + NV+QVDVP+ +GAFGIL  HVPTL +L+PG++ V+  +G + K 
Sbjct: 38  MSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKY 97

Query: 81  FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAV 140
           FVSSG++TVN DSSVQ++AEEA  +D LD  AA+  L KAQSEL  A+ E  +AE QI +
Sbjct: 98  FVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRI 157

Query: 141 EVAEAL 146
           E  EAL
Sbjct: 158 EANEAL 163

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Bos taurus (taxid: 9913)

>sp|P30049|ATPD_HUMAN ATP synthase subunit delta, mitochondrial OS=Homo sapiens GN=ATP5D PE=1 SV=2

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/128 (53%), Positives = 91/128 (71%)

Query: 19  DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQ 78
           +QM FT AS  +VF+   NV+QVDVP+ +GAFGIL  HVPTL +L+PG++ V+  +G + 
Sbjct: 36  NQMSFTFASPTQVFFNGANVRQVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTS 95

Query: 79  KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 138
           K FVSSG+I VN DSSVQ++AEEA  +D LD  AA+  L KAQ+EL   + E  +AE QI
Sbjct: 96  KYFVSSGSIAVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQAELVGTADEATRAEIQI 155

Query: 139 AVEVAEAL 146
            +E  EAL
Sbjct: 156 RIEANEAL 163

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Homo sapiens (taxid: 9606)

>sp|Q09544|ATPD_CAEEL ATP synthase subunit delta, mitochondrial OS=Caenorhabditis elegans GN=F58F12.1 PE=1 SV=1

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/156 (47%), Positives = 100/156 (64%), Gaps = 11/156 (7%)

Query: 1   MAARLVTSATRLARRGYA----------DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAF 50
           M AR +   + +A+RGYA          +++  T AS +   ++N  VKQVDVP+ +G  
Sbjct: 1   MLARTIQRFSVVAKRGYAAAAPAANANPEELRLTFASPDTAVFSNAVVKQVDVPTLAGMV 60

Query: 51  GILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDA 110
           G+L NHVPT+ +LKPGV++V   EG  Q++FVSSGT++VN D S Q++AEE   V+ +D 
Sbjct: 61  GVLANHVPTIGVLKPGVVSVTTNEGTVQRLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDE 120

Query: 111 SAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 146
           SAAR  L  AQ   S   SE A+AEAQI  EVAEAL
Sbjct: 121 SAARAELDAAQ-RASGEGSEVARAEAQIRAEVAEAL 155

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Caenorhabditis elegans (taxid: 6239)

>sp|Q92196|ATPD_AGABI ATP synthase subunit delta, mitochondrial OS=Agaricus bisporus GN=atpD PE=2 SV=1

 Score =  103 bits (257), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 89/149 (59%), Gaps = 4/149 (2%)

Query: 2   AARLVTSATRLARRGYA---DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVP 58
           AAR  T+     RRGYA   D++  +LA  +K  +++Q+V QV++P+ SG  GIL +HVP
Sbjct: 10  AARRATTHVAYTRRGYAEISDKLKLSLALPHKAIFSSQDVVQVNIPAESGDMGILSSHVP 69

Query: 59  TLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLS 118
           ++  L+PGV+ V E  G SQK FVS G  TV+ ++ + I   EA P++     A R  L 
Sbjct: 70  SIEPLRPGVVEVVEDSG-SQKWFVSGGFATVHPNNRLTINVVEAAPLEDFSIEAIRANLQ 128

Query: 119 KAQSELSSASSETAKAEAQIAVEVAEALK 147
           +A    + + SE  K EAQI  EV EAL+
Sbjct: 129 EANKVAAGSGSEADKMEAQIEAEVYEALQ 157

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Agaricus bisporus (taxid: 5341)

>sp|P56525|ATPD_NEUCR ATP synthase subunit delta, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=atp-16 PE=3 SV=2

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 91/152 (59%), Gaps = 6/152 (3%)

Query: 2   AARLVTSATR--LARRGYA----DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPN 55
           A R+  +A R  L RRGYA    D++  +L+  ++  Y +Q+V QV++P+ SG  G+L N
Sbjct: 10  ALRVRPTAVRAPLQRRGYAEAVADKIKLSLSLPHQAIYKSQDVVQVNIPAVSGEMGVLAN 69

Query: 56  HVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARD 115
           HVP++  LKPG++ V E  G +++ F+S G   V   S + I A E + ++   A A R 
Sbjct: 70  HVPSIEQLKPGLVEVIEESGSNKQYFLSGGFAVVQPGSKLSINAVEGYALEDFSAEAVRA 129

Query: 116 VLSKAQSELSSASSETAKAEAQIAVEVAEALK 147
            +++AQ  +S   S+   AEAQ+ +EV E+L+
Sbjct: 130 QIAEAQKIVSGGGSQQDIAEAQVELEVLESLQ 161

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q757N0|ATPD_ASHGO ATP synthase subunit delta, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ATP16 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 79/139 (56%), Gaps = 6/139 (4%)

Query: 13  ARRGYA----DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVI 68
           ARR YA    D +    A  ++  +    VKQV++P  +G  GIL NHVP +  L PGV+
Sbjct: 18  ARRTYAEAAADALKLNFALPHETLFAGTAVKQVNLPVKTGQIGILANHVPIVEQLVPGVV 77

Query: 69  TVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSAS 128
            V E    S+K FVS G  TV  DS++ I + EA P+DS  A   R +L++AQ    +A 
Sbjct: 78  EVLEGSE-SKKFFVSGGFATVQPDSTLSITSVEAFPLDSFSAENVRALLAEAQKNAGAAD 136

Query: 129 SETAKAEAQIAVEVAEALK 147
           S  A AEA I +EV EAL+
Sbjct: 137 SRVA-AEASIQIEVLEALQ 154

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q96252|ATP4_ARATH ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana GN=At5g47030 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 76/113 (67%), Gaps = 1/113 (0%)

Query: 34  TNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDS 93
           T + V  V +P+ +G  G+LP HVPT+A LKPG+++V+E   V +K F+SSG   ++ +S
Sbjct: 86  TGKEVDMVIIPASTGQMGVLPGHVPTIAELKPGIMSVHEGTDV-KKYFLSSGFAFLHANS 144

Query: 94  SVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 146
              IIA EA P+D +D S  +  L++ Q +L+SA+++  KAEAQI VEV  A+
Sbjct: 145 VADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASATTDLEKAEAQIGVEVHSAI 197

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55F42|ATPD_DICDI ATP synthase subunit delta, mitochondrial OS=Dictyostelium discoideum GN=atp5D PE=3 SV=1

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 71/129 (55%)

Query: 18  ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVS 77
           +D + F+L S ++  Y ++  + V +P   G FG+  NHVP +A LKPGVI +    G  
Sbjct: 34  SDLLTFSLLSPHQTIYKDKKAQLVTLPGAKGIFGVAKNHVPRIAELKPGVIQINHENGDL 93

Query: 78  QKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQ 137
           +K F+S G   VN D+S  I   EA P+D LDA   ++ L++     + A  E AKA A 
Sbjct: 94  EKFFISGGFAFVNPDASCYINTIEAVPIDQLDAEEVKNGLARYTQLYNDAQEENAKAVAL 153

Query: 138 IAVEVAEAL 146
           I +E  + +
Sbjct: 154 IGLETYQQM 162

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
263173412	161	mitochondrial F1F0-ATP synthase subunit	0.666	0.906	0.700	6e-54
332374602	158	unknown [Dendroctonus ponderosae]	0.607	0.841	0.706	7e-53
170052873	161	ATP synthase delta chain, mitochondrial	0.657	0.894	0.682	6e-52
432101156	369	ATP synthase subunit delta, mitochondria	0.963	0.571	0.542	1e-51
158297424	169	AGAP007841-PA [Anopheles gambiae str. PE	0.602	0.781	0.712	2e-51
91081977	158	PREDICTED: similar to ATP synthase delta	0.607	0.841	0.699	4e-51
322802698	191	hypothetical protein SINV_15147 [Solenop	0.652	0.748	0.666	3e-50
239788326	161	ACYPI007021 [Acyrthosiphon pisum]	0.607	0.826	0.669	5e-50
193709035	161	PREDICTED: ATP synthase subunit delta, m	0.607	0.826	0.661	7e-50
307182759	162	ATP synthase subunit delta, mitochondria	0.607	0.820	0.671	9e-49

>gi|263173412|gb|ACY69935.1| mitochondrial F1F0-ATP synthase subunit delta/ATP16 [Cimex lectularius]

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 103/147 (70%), Positives = 126/147 (85%), Gaps = 1/147 (0%)

Query: 1   MAARLVT-SATRLARRGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPT 59
            A RL + SA   A RGYADQMDFT A+ NKVFY+N NVKQVDVPSFSG+FGILPNHVPT
Sbjct: 10  FAFRLASRSANFQATRGYADQMDFTFAAANKVFYSNSNVKQVDVPSFSGSFGILPNHVPT 69

Query: 60  LAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSK 119
           LA+L+PGV+TV+E +G S+K+FVSSGT+T+N+DSSVQ++AEEAHP++  D SAA++ L+K
Sbjct: 70  LAVLRPGVVTVFEQDGNSKKVFVSSGTVTINEDSSVQVLAEEAHPLEDFDLSAAKEQLNK 129

Query: 120 AQSELSSASSETAKAEAQIAVEVAEAL 146
           AQ++LS ASSE  KAEA IAVEVAEAL
Sbjct: 130 AQADLSRASSELEKAEALIAVEVAEAL 156

Source: Cimex lectularius

Species: Cimex lectularius

Genus: Cimex

Family: Cimicidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374602|gb|AEE62442.1| unknown [Dendroctonus ponderosae]

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 124/133 (93%)

Query: 14  RRGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYET 73
           +RGYA++M FT ASGN++FY  ++V+QVDVPSFSG+FGILP HVPTLA+LKPGV++VYE 
Sbjct: 21  KRGYAEEMSFTFASGNQIFYEAKSVRQVDVPSFSGSFGILPKHVPTLAVLKPGVVSVYEN 80

Query: 74  EGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAK 133
           EG  +KIFVSSGT+T+N+DSSVQI+AEEAHPV+++DASAAR++L+K+QS+LSSA+++ AK
Sbjct: 81  EGNVKKIFVSSGTVTINEDSSVQILAEEAHPVENIDASAARELLTKSQSQLSSAANDQAK 140

Query: 134 AEAQIAVEVAEAL 146
           AEA+IAVEV+EAL
Sbjct: 141 AEAEIAVEVSEAL 153

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170052873|ref|XP_001862419.1| ATP synthase delta chain, mitochondrial [Culex quinquefasciatus] gi|167873641|gb|EDS37024.1| ATP synthase delta chain, mitochondrial [Culex quinquefasciatus]

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 101/148 (68%), Positives = 123/148 (83%), Gaps = 4/148 (2%)

Query: 3   ARLVTSATRLAR----RGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVP 58
           ARL +S     R    RGYAD+M FTLA+ NKVFY + N++QVDVPSFSGAFGILP HVP
Sbjct: 9   ARLASSVRPALRVMQSRGYADEMAFTLAAANKVFYDSANIRQVDVPSFSGAFGILPKHVP 68

Query: 59  TLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLS 118
           TLA+LKPGV+TVYE +G  +K+FVSSGTITVN+DSSVQ++AEEAHPV+ LDA A R++LS
Sbjct: 69  TLAVLKPGVVTVYEQDGAVKKVFVSSGTITVNEDSSVQVLAEEAHPVEDLDAGACRELLS 128

Query: 119 KAQSELSSASSETAKAEAQIAVEVAEAL 146
            AQ++LSSAS++  +AEA IAVEVAEAL
Sbjct: 129 GAQNKLSSASTDVERAEAGIAVEVAEAL 156

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432101156|gb|ELK29440.1| ATP synthase subunit delta, mitochondrial [Myotis davidii]

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/214 (54%), Positives = 148/214 (69%), Gaps = 3/214 (1%)

Query: 5   LVTSATRLARRGYADQMDFTLAS-GNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAIL 63
           L+ S   L RR +   +DF L   G +VF+   NV+QVDVP+ +GAFGIL  HVPTL +L
Sbjct: 156 LLISLQHLCRRAWV--LDFVLTDDGTEVFFNGANVRQVDVPTQTGAFGILAAHVPTLQVL 213

Query: 64  KPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSE 123
           +PG++ V+  +G + K FVSSG++TVN DSSVQ++AEEA  +D LD  AA+  L KAQSE
Sbjct: 214 RPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVSLDMLDLGAAKANLEKAQSE 273

Query: 124 LSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARD 183
           LS AS E  +AE QI +E  EAL   + SG++TVN DSSVQ++AEEA  +D LD  AA+ 
Sbjct: 274 LSGASDEAMRAEIQIRIEANEALVKALDSGSVTVNADSSVQLLAEEAVSLDMLDLGAAKA 333

Query: 184 VLSKAQSELSSASSETAKAEAQIAVEVAEALVAA 217
            L KAQSELS AS E  +AE QI +E  EALV A
Sbjct: 334 NLEKAQSELSGASDEAMRAEIQIRIEANEALVKA 367

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|158297424|ref|XP_317657.4| AGAP007841-PA [Anopheles gambiae str. PEST] gi|157015188|gb|EAA12214.5| AGAP007841-PA [Anopheles gambiae str. PEST]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 117/132 (88%)

Query: 15  RGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETE 74
           RGYAD+M FTLA+ NKVFY + N++QVDVPSFSGAFGILP HVPTLA+LKPGV+TVYE +
Sbjct: 33  RGYADEMAFTLAAANKVFYDSANIRQVDVPSFSGAFGILPKHVPTLAVLKPGVVTVYEND 92

Query: 75  GVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKA 134
           G  +KIFVSSGT+TVN+D+SVQ++AEEAHPV+ LD+SA R++LS AQ++LSSAS +  +A
Sbjct: 93  GAVKKIFVSSGTVTVNEDASVQVLAEEAHPVEDLDSSACRELLSNAQTQLSSASGDKDRA 152

Query: 135 EAQIAVEVAEAL 146
           EA IA+EVAEAL
Sbjct: 153 EAAIAMEVAEAL 164

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081977|ref|XP_968285.1| PREDICTED: similar to ATP synthase delta chain, mitochondrial [Tribolium castaneum] gi|270008191|gb|EFA04639.1| hypothetical protein TcasGA2_TC013931 [Tribolium castaneum]

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 93/133 (69%), Positives = 119/133 (89%)

Query: 14  RRGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYET 73
           +RGYAD+M FT A+GN+VFY  Q+V+QVDVPSFSG+FGILP HVPTLA+LKPGV+TV+E 
Sbjct: 21  KRGYADEMSFTFAAGNQVFYDAQSVRQVDVPSFSGSFGILPKHVPTLAVLKPGVVTVFEN 80

Query: 74  EGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAK 133
           +G  +KIFVSSGT+T+N+DSSVQ++AEEA PV+++D SAAR++LSKAQ ELSSA++E A+
Sbjct: 81  DGNVKKIFVSSGTVTINEDSSVQVLAEEAAPVENIDISAAREILSKAQGELSSAATEQAR 140

Query: 134 AEAQIAVEVAEAL 146
           AEA IA+EV EAL
Sbjct: 141 AEASIAIEVGEAL 153

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802698|gb|EFZ22922.1| hypothetical protein SINV_15147 [Solenopsis invicta]

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/147 (66%), Positives = 118/147 (80%), Gaps = 4/147 (2%)

Query: 4   RLVTSATRLARRGYAD----QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPT 59
           R      R  RR YAD    +M FT A  N+VFY    ++QVDVPSFSGAFGILP HVPT
Sbjct: 40  RPFLRCVRSQRRTYADAAGNEMKFTFAGANQVFYDQAAIRQVDVPSFSGAFGILPKHVPT 99

Query: 60  LAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSK 119
           LA+LKPGV+TVYE +G ++KIFVSSGT+T+N+DSSVQI+AEEAHP+++LD SAARDVL+K
Sbjct: 100 LAVLKPGVVTVYEEDGSTKKIFVSSGTVTINEDSSVQILAEEAHPLENLDGSAARDVLNK 159

Query: 120 AQSELSSASSETAKAEAQIAVEVAEAL 146
           AQ +LSSA+S+  KAEA IAVEVAEAL
Sbjct: 160 AQQQLSSATSDIDKAEASIAVEVAEAL 186

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239788326|dbj|BAH70851.1| ACYPI007021 [Acyrthosiphon pisum]

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 89/133 (66%), Positives = 113/133 (84%)

Query: 1   MAARLVTSATRLARRGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTL 60
           + A+L    T+   R YADQM+FT A+ N++FY N+N+KQVDVPSFSG+FGILPNHVPTL
Sbjct: 10  LVAKLTQGPTKCFSRNYADQMNFTFAAANQIFYANKNIKQVDVPSFSGSFGILPNHVPTL 69

Query: 61  AILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKA 120
           A+L+PGV+TVYE EG S+KIFVSSGTITVN+DSSVQ++AEEAHP++ +D SAAR VL +A
Sbjct: 70  AVLRPGVVTVYEDEGTSKKIFVSSGTITVNEDSSVQVLAEEAHPIEDIDGSAARQVLQEA 129

Query: 121 QSELSSASSETAK 133
           QS+LS+AS + AK
Sbjct: 130 QSQLSTASGDVAK 142

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193709035|ref|XP_001943366.1| PREDICTED: ATP synthase subunit delta, mitochondrial-like isoform 1 [Acyrthosiphon pisum]

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 113/133 (84%)

Query: 1   MAARLVTSATRLARRGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTL 60
           + A+L    T+   R YADQM+FT A+ N++FY N+N+KQVDVPSFSG+FGILPNHVPTL
Sbjct: 10  LVAKLTQGPTKCFSRNYADQMNFTFAAANQIFYANKNIKQVDVPSFSGSFGILPNHVPTL 69

Query: 61  AILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKA 120
           A+L+PG++TVYE EG S+KIFVSSGTITVN+DSSVQ++AEEAHP++ +D SAAR VL +A
Sbjct: 70  AVLRPGIVTVYEDEGTSKKIFVSSGTITVNEDSSVQVLAEEAHPIEDIDGSAARQVLQEA 129

Query: 121 QSELSSASSETAK 133
           QS+LS+AS + AK
Sbjct: 130 QSQLSTASGDVAK 142

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182759|gb|EFN69882.1| ATP synthase subunit delta, mitochondrial [Camponotus floridanus]

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 92/137 (67%), Positives = 116/137 (84%), Gaps = 4/137 (2%)

Query: 14  RRGYA----DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVIT 69
           RR YA    DQM FT A  N+VFY    ++QVDVPSFSGAFGILP HVPTLA+LKPGV+T
Sbjct: 21  RRTYAEVASDQMKFTFAGANQVFYDQAAIRQVDVPSFSGAFGILPKHVPTLAVLKPGVVT 80

Query: 70  VYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASS 129
           VYE +G ++K+FVSSGT+T+N+D+SVQI+AEEAHPV+++D+SAARD+L+KAQ +LSSA++
Sbjct: 81  VYEEDGSTKKVFVSSGTVTINEDNSVQILAEEAHPVENIDSSAARDILTKAQQQLSSATT 140

Query: 130 ETAKAEAQIAVEVAEAL 146
           +  KAEA IAVEV EAL
Sbjct: 141 DKDKAEAAIAVEVGEAL 157

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
FB|FBgn0028342	157	l(1)G0230 "lethal (1) G0230" [	0.520	0.726	0.568	8.8e-31
ZFIN|ZDB-GENE-030131-7649	159	atp5d "ATP synthase, H+ transp	0.502	0.691	0.573	5.6e-29
MGI|MGI:1913293	168	Atp5d "ATP synthase, H+ transp	0.433	0.565	0.589	8.4e-26
RGD|621372	168	Atp5d "ATP synthase, H+ transp	0.433	0.565	0.568	7.6e-25
UNIPROTKB|P35434	168	Atp5d "ATP synthase subunit de	0.433	0.565	0.568	7.6e-25
UNIPROTKB|P05630	168	ATP5D "ATP synthase subunit de	0.433	0.565	0.568	9.7e-25
UNIPROTKB|P30049	168	ATP5D "ATP synthase subunit de	0.438	0.571	0.562	1.2e-24
UNIPROTKB|F1S6Q7	168	ATP5D "ATP synthase subunit de	0.433	0.565	0.557	1.6e-24
UNIPROTKB|F1PY24	168	ATP5D "Uncharacterized protein	0.433	0.565	0.568	2e-24
WB|WBGene00019061	163	F58F12.1 [Caenorhabditis elega	0.520	0.699	0.451	4.8e-23

FB|FBgn0028342 l(1)G0230 "lethal (1) G0230" [Drosophila melanogaster (taxid:7227)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 66/116 (56%), Positives = 89/116 (76%)

Query:     3 ARLVTS-ATRLAR-RGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTL 60
             ARL+ +   RLA+ R Y+D+M  T A+ NK FY    V+Q+DVPSFSG+FGIL  HVPTL
Sbjct:     7 ARLLAARGARLAQNRSYSDEMKLTFAAANKTFYDAAVVRQIDVPSFSGSFGILAKHVPTL 66

Query:    61 AILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDV 116
             A+LKPGV+ V E +G + K FVSSG++TVN+DSSVQ++AEEAH ++ +DA+ AR +
Sbjct:    67 AVLKPGVVQVVENDGKTLKFFVSSGSVTVNEDSSVQVLAEEAHNIEDIDANEARQL 122

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0015992 "proton transport" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

ZFIN|ZDB-GENE-030131-7649 atp5d "ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit" [Danio rerio (taxid:7955)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 66/115 (57%), Positives = 86/115 (74%)

Query:     4 RLVTSATRLARRGYAD----QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPT 59
             R    A R AR  YAD    QM FT AS  +VF+   +VKQ+DVP+ +GAFGILP HVPT
Sbjct:     9 RRAAPALRHAR-SYADAPSAQMSFTFASPTEVFFKEASVKQIDVPTLTGAFGILPAHVPT 67

Query:    60 LAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 114
             L +L+PGV+TV+  +G S+K FVSSG++TVN DSSVQ++AEEA P++SLD +AA+
Sbjct:    68 LQVLRPGVVTVFNDDGSSKKYFVSSGSVTVNADSSVQLLAEEAFPLESLDVAAAK 122

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

MGI|MGI:1913293 Atp5d "ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit" [Mus musculus (taxid:10090)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 56/95 (58%), Positives = 74/95 (77%)

Query:    20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQK 79
             QM FT AS  +VF+ + NVKQVDVP+ +GAFGIL +HVPTL +L+PG++ V+  +G + K
Sbjct:    37 QMSFTFASPTQVFFDSANVKQVDVPTLTGAFGILASHVPTLQVLRPGLVVVHTEDGTTTK 96

Query:    80 IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 114
              FVSSG++TVN DSSVQ++AEEA  +D LD  AAR
Sbjct:    97 YFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAR 131

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005740 "mitochondrial envelope" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO

GO:0006172 "ADP biosynthetic process" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=ISO

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0045259 "proton-transporting ATP synthase complex" evidence=ISO

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

RGD|621372 Atp5d "ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit" [Rattus norvegicus (taxid:10116)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 54/95 (56%), Positives = 72/95 (75%)

Query:    20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQK 79
             QM FT AS  +VF+   NV+QVDVP+ +GAFGIL +HVPTL +L+PG++ V+  +G + K
Sbjct:    37 QMSFTFASPTQVFFDGANVRQVDVPTLTGAFGILASHVPTLQVLRPGLVMVHAEDGTTTK 96

Query:    80 IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 114
              FVSSG++TVN DSSVQ++AEE   +D LD  AAR
Sbjct:    97 YFVSSGSVTVNADSSVQLLAEEVVTLDMLDLGAAR 131

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA;ISO;IDA

GO:0006172 "ADP biosynthetic process" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006754 "ATP biosynthetic process" evidence=TAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA;TAS

GO:0016887 "ATPase activity" evidence=ISO;IMP

GO:0032403 "protein complex binding" evidence=IDA

GO:0045259 "proton-transporting ATP synthase complex" evidence=TAS

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA;IDA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA;TAS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|P35434 Atp5d "ATP synthase subunit delta, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 54/95 (56%), Positives = 72/95 (75%)

Query:    20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQK 79
             QM FT AS  +VF+   NV+QVDVP+ +GAFGIL +HVPTL +L+PG++ V+  +G + K
Sbjct:    37 QMSFTFASPTQVFFDGANVRQVDVPTLTGAFGILASHVPTLQVLRPGLVMVHAEDGTTTK 96

Query:    80 IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 114
              FVSSG++TVN DSSVQ++AEE   +D LD  AAR
Sbjct:    97 YFVSSGSVTVNADSSVQLLAEEVVTLDMLDLGAAR 131

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|P05630 ATP5D "ATP synthase subunit delta, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 54/95 (56%), Positives = 73/95 (76%)

Query:    20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQK 79
             QM FT AS  +VF+ + NV+QVDVP+ +GAFGIL  HVPTL +L+PG++ V+  +G + K
Sbjct:    37 QMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSK 96

Query:    80 IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 114
              FVSSG++TVN DSSVQ++AEEA  +D LD  AA+
Sbjct:    97 YFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAK 131

GO:0045259 "proton-transporting ATP synthase complex" evidence=IDA

GO:0015992 "proton transport" evidence=IDA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IDA

GO:0005740 "mitochondrial envelope" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|P30049 ATP5D "ATP synthase subunit delta, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 54/96 (56%), Positives = 72/96 (75%)

Query:    19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQ 78
             +QM FT AS  +VF+   NV+QVDVP+ +GAFGIL  HVPTL +L+PG++ V+  +G + 
Sbjct:    36 NQMSFTFASPTQVFFNGANVRQVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTS 95

Query:    79 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 114
             K FVSSG+I VN DSSVQ++AEEA  +D LD  AA+
Sbjct:    96 KYFVSSGSIAVNADSSVQLLAEEAVTLDMLDLGAAK 131

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA;NAS

GO:0005215 "transporter activity" evidence=NAS

GO:0016887 "ATPase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=NAS

GO:0006119 "oxidative phosphorylation" evidence=NAS

GO:0006200 "ATP catabolic process" evidence=NAS

GO:0006754 "ATP biosynthetic process" evidence=NAS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IC;NAS;TAS

GO:0043531 "ADP binding" evidence=NAS

GO:0046688 "response to copper ion" evidence=NAS

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=NAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1S6Q7 ATP5D "ATP synthase subunit delta, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 53/95 (55%), Positives = 72/95 (75%)

Query:    20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQK 79
             QM FT AS  +VF+   NV+QVDVP+ +GAFGIL +HVPTL +L+PG++ V+  +G + K
Sbjct:    37 QMSFTFASPTQVFFNGANVRQVDVPTQTGAFGILASHVPTLQVLRPGLVVVHAEDGTTSK 96

Query:    80 IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 114
              FVSSG++TVN DSSVQ++AEEA  +D LD   A+
Sbjct:    97 YFVSSGSVTVNADSSVQLLAEEAVTLDMLDPGVAK 131

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|F1PY24 ATP5D "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 54/95 (56%), Positives = 71/95 (74%)

Query:    20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQK 79
             QM FT AS  +VF+   NV+QVDVP+ +GAFGIL  HVPTL +L+PG++ V+  +G   K
Sbjct:    37 QMSFTFASPTQVFFNGANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTISK 96

Query:    80 IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 114
              FVSSG++TVN DSSVQ++AEEA  +D LD  AA+
Sbjct:    97 YFVSSGSVTVNADSSVQLLAEEAVTLDMLDVGAAK 131

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

WB|WBGene00019061 F58F12.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 56/124 (45%), Positives = 81/124 (65%)

Query:     1 MAARLVTSATRLARRGYA----------DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAF 50
             M AR +   + +A+RGYA          +++  T AS +   ++N  VKQVDVP+ +G  
Sbjct:     1 MLARTIQRFSVVAKRGYAAAAPAANANPEELRLTFASPDTAVFSNAVVKQVDVPTLAGMV 60

Query:    51 GILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDA 110
             G+L NHVPT+ +LKPGV++V   EG  Q++FVSSGT++VN D S Q++AEE   V+ +D 
Sbjct:    61 GVLANHVPTIGVLKPGVVSVTTNEGTVQRLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDE 120

Query:   111 SAAR 114
             SAAR
Sbjct:   121 SAAR 124

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P78700	ATPD_KLULA	No assigned EC number	0.4014	0.6210	0.8553	yes	N/A
P05630	ATPD_BOVIN	No assigned EC number	0.5555	0.5753	0.75	yes	N/A
Q757N0	ATPD_ASHGO	No assigned EC number	0.4244	0.6073	0.8417	yes	N/A
P30049	ATPD_HUMAN	No assigned EC number	0.5390	0.5844	0.7619	yes	N/A
Q09544	ATPD_CAEEL	No assigned EC number	0.4743	0.6621	0.8895	yes	N/A
Q9D3D9	ATPD_MOUSE	No assigned EC number	0.5905	0.5799	0.7559	yes	N/A
P35434	ATPD_RAT	No assigned EC number	0.5748	0.5799	0.7559	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	219
cd12152	123	cd12152, F1-ATPase_delta, mitochondrial ATP syntha	4e-33
pfam02823	80	pfam02823, ATP-synt_DE_N, ATP synthase, Delta/Epsi	1e-20
PRK00571	135	PRK00571, atpC, F0F1 ATP synthase subunit epsilon;	1e-18
COG0355	135	COG0355, AtpC, F0F1-type ATP synthase, epsilon sub	1e-18
TIGR01216	130	TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon	8e-16
PRK13446	136	PRK13446, atpC, F0F1 ATP synthase subunit epsilon;	1e-15
cd12152	123	cd12152, F1-ATPase_delta, mitochondrial ATP syntha	1e-11
PRK13448	135	PRK13448, atpC, F0F1 ATP synthase subunit epsilon;	3e-11
PRK13450	132	PRK13450, atpC, F0F1 ATP synthase subunit epsilon;	7e-10
PRK14736	133	PRK14736, atpC, F0F1 ATP synthase subunit epsilon;	4e-09
PRK13444	127	PRK13444, atpC, F0F1 ATP synthase subunit epsilon;	5e-09
CHL00063	134	CHL00063, atpE, ATP synthase CF1 epsilon subunit	6e-09
PRK13449	88	PRK13449, atpC, F0F1 ATP synthase subunit epsilon;	2e-07
PRK14735	139	PRK14735, atpC, F0F1 ATP synthase subunit epsilon;	2e-06
PRK13443	136	PRK13443, atpC, F0F1 ATP synthase subunit epsilon;	3e-06
PRK13442	89	PRK13442, atpC, F0F1 ATP synthase subunit epsilon;	4e-06
PRK06228	131	PRK06228, PRK06228, F0F1 ATP synthase subunit epsi	4e-06
PRK13447	136	PRK13447, PRK13447, F0F1 ATP synthase subunit epsi	5e-06
PRK00571	135	PRK00571, atpC, F0F1 ATP synthase subunit epsilon;	1e-05
PRK01474	112	PRK01474, atpC, F0F1 ATP synthase subunit epsilon;	3e-05
COG0355	135	COG0355, AtpC, F0F1-type ATP synthase, epsilon sub	9e-05
PRK13446	136	PRK13446, atpC, F0F1 ATP synthase subunit epsilon;	2e-04
TIGR01216	130	TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon	3e-04

>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit

 Score =  115 bits (290), Expect = 4e-33
 Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 2/125 (1%)

Query: 21  MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
           +   + +  +VF++ + V+ V +P   G FGILP H P +  LKPGV+ + + +G  +  
Sbjct: 1   LKLEIVTPERVFFSGE-VESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYF 59

Query: 81  FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAV 140
            VS G + V  +  V I+A+EA   + +D   A + L +A+  L+ A  E  KA A+ A+
Sbjct: 60  AVSGGFLEVTPN-RVTILADEAERPEDIDVERAEEALERAEERLAQAKDEREKARAEAAL 118

Query: 141 EVAEA 145
           E A A
Sbjct: 119 ERALA 123

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit. Length = 123

>gnl|CDD|217242 pfam02823, ATP-synt_DE_N, ATP synthase, Delta/Epsilon chain, beta-sandwich domain

 Score = 81.7 bits (203), Expect = 1e-20
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 21  MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
           +   + +  +V + +  V+ V  P   G FGILP H P L  LKPGV+ +   +G  +KI
Sbjct: 1   LKLEIVTPERVVF-SGEVEMVVAPGTEGEFGILPGHAPLLTALKPGVLRIKTEDGEEEKI 59

Query: 81  FVSSGTITVNDDSSVQIIAEEA 102
            VS G + V  +  V I+A+EA
Sbjct: 60  AVSGGFLEVQPN-EVTILADEA 80

Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213). Length = 80

>gnl|CDD|234796 PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated

 Score = 78.3 bits (194), Expect = 1e-18
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 1/109 (0%)

Query: 37  NVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ 96
            V++V VP   G  GILP H P L  LKPGV+ + + +G  + I VS G + V  D  V 
Sbjct: 19  EVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPD-KVT 77

Query: 97  IIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA 145
           ++A+ A   D +D + A +   +A+  L +   +   A AQ A+  A A
Sbjct: 78  VLADSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIA 126

Length = 135

>gnl|CDD|223432 COG0355, AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]

 Score = 78.1 bits (193), Expect = 1e-18
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 3/127 (2%)

Query: 20  QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGV-SQ 78
           ++   + S   + Y +  VK V VP+  G  GILP H P +  LKPGV+ +   +G   +
Sbjct: 3   ELKLEIVSPEGIIY-SGEVKSVVVPTTEGELGILPGHAPLITALKPGVVRIKTEDGDKEE 61

Query: 79  KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 138
           KI VS G + V   + V I+A+ A   D +D + A +   +A+ EL SA  +     A+ 
Sbjct: 62  KIAVSGGFLEV-QPNEVTILADSAERADDIDEARAEEAKERAEKELESAKDDKDYRRAEA 120

Query: 139 AVEVAEA 145
           A+  A A
Sbjct: 121 ALARALA 127

Length = 135

>gnl|CDD|130283 TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon subunit (delta in mitochondria)

 Score = 70.7 bits (174), Expect = 8e-16
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 1/108 (0%)

Query: 38  VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
           V+ V +P   G  GILP H P +  LKPGV+ + +     + I VS G   V     V I
Sbjct: 18  VESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEV-QPDKVTI 76

Query: 98  IAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA 145
           +A+ A   D +D + A   L  A+  L SA  +   AEA + ++ A A
Sbjct: 77  LADGAVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARA 124

This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation [Energy metabolism, ATP-proton motive force interconversion]. Length = 130

>gnl|CDD|184056 PRK13446, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 35  NQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSS 94
           ++ V +V  P   G FG+LP H P L  LK G +T Y+  G +  + V+ G   V+++  
Sbjct: 18  SEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELT-YKKGGKTHYVAVNGGFAEVSNN-K 75

Query: 95  VQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVA 143
           V ++AE A   + +D   AR  L +A+  L   + E   A A+ A+E A
Sbjct: 76  VTVLAETAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALERA 124

Length = 136

>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit

 Score = 59.1 bits (144), Expect = 1e-11
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
              VS G + V  +  V I+A+EA   + +D   A + L +A+  L+ A  E  KA A+ 
Sbjct: 58  YFAVSGGFLEVTPNR-VTILADEAERPEDIDVERAEEALERAEERLAQAKDEREKARAEA 116

Query: 207 AVEVAEA 213
           A+E A A
Sbjct: 117 ALERALA 123

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit. Length = 123

>gnl|CDD|139579 PRK13448, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 23  FTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFV 82
           F L S  K+ ++ + V QVD+P   G FG+L  H P +A+++PG++TV    G  QKI V
Sbjct: 6   FDLVSPEKLAFSGE-VDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTV-TAGGNQQKIVV 63

Query: 83  SSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSEL 124
             G   V+ +  + ++A+ A  V  LD +     +++ +++L
Sbjct: 64  LGGLAEVS-EKGLTVLADVATSVADLDLAQFAATIAEMEAQL 104

Length = 135

>gnl|CDD|184059 PRK13450, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 54.8 bits (132), Expect = 7e-10
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 2/108 (1%)

Query: 18  ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVS 77
           A+ +  T+ +  K FY  + VK+V      G   ILPNHVP +  LKP +  + +  G  
Sbjct: 1   ANNIKLTILTPEKNFYIGE-VKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEK 59

Query: 78  QKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELS 125
           +KIF SSG + V  ++ V I+ + +   + +D   A +   +A+  L 
Sbjct: 60  KKIFTSSGVLKVE-NNEVYILCDASEWPEEIDIKRAENAKKRAEERLR 106

Length = 132

>gnl|CDD|173198 PRK14736, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 52.9 bits (127), Expect = 4e-09
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 23  FTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFV 82
           F L    +  Y+ + V+ V +P   G   +LP H P L  LK GVITV ET G  ++I+V
Sbjct: 6   FDLVGPERTLYSGE-VEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIYV 64

Query: 83  SSGTITVNDDSSVQIIAEEAHPVDSL 108
             G   +   +SV ++AE A PV+ L
Sbjct: 65  RGGFAEIG-PTSVTVLAERAAPVEEL 89

Length = 133

>gnl|CDD|139576 PRK13444, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 52.6 bits (126), Expect = 5e-09
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 3/128 (2%)

Query: 17  YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGV 76
            A ++  ++ S  K+ Y  + V  + VP   G FGILPNH P +A L  G++ +      
Sbjct: 2   MAKKLTVSVISPEKILYKGE-VDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIR-KGEK 59

Query: 77  SQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEA 136
            ++I V  G   V D+  + I+ +     + +D    + +L++A+    S S      + 
Sbjct: 60  LKRISVEGGFCEVKDN-QISILTDHGALKEDIDHEHEKKLLAEAEKLPPSDSKNLLLQKT 118

Query: 137 QIAVEVAE 144
           +  + VA 
Sbjct: 119 KTRILVAS 126

Length = 127

>gnl|CDD|214351 CHL00063, atpE, ATP synthase CF1 epsilon subunit

 Score = 52.2 bits (126), Expect = 6e-09
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 29  NKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTIT 88
           N++ + +  V+++ +P+ SG  G+LPNH P    L  GV+ +   +          G   
Sbjct: 11  NRIVW-DSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWL--TMALMGGFA 67

Query: 89  VNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA 145
              ++ + I+  +A     +D   A+  L  A++ L  A  +  K EA +A++ A A
Sbjct: 68  RIGNNEITILVNDAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARA 124

Length = 134

>gnl|CDD|184058 PRK13449, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 38  VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIF-VSSGTITVNDDSSVQ 96
           V  V VP   G FG+L  H P +  L+ G +TVY ++G + ++F V  G   VN+   + 
Sbjct: 20  VDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEVFHVQGGFAEVNEK-GLT 78

Query: 97  IIAEEA 102
           I+AE A
Sbjct: 79  ILAEHA 84

Length = 88

>gnl|CDD|173197 PRK14735, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 35  NQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSS 94
           + +V  +  P+  G  GILP H P L IL+PG +      GV     +S G + V     
Sbjct: 16  SDDVDMISAPTKDGRVGILPRHAPLLTILEPGELD-IVKNGVRTPFAISGGFMEVLPH-R 73

Query: 95  VQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVA 143
           V I+A+ A   D +D + A    ++A+       SE   A A+  +  A
Sbjct: 74  VTILADTAERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRA 122

Length = 139

>gnl|CDD|237388 PRK13443, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 18  ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVS 77
           A  + F L S  +   + Q    V +P   G    +  H PT+  L+PG++  +   G  
Sbjct: 2   AGTLQFDLVSPERRLASFQ-ATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQ 60

Query: 78  QKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQ 137
           +  +  +G     + +S+ ++AE+A PV+ L  +   + +++A+   S A  E    +  
Sbjct: 61  E--YAVTGGFAEINATSISVLAEKAIPVEELTGAVLDEFIAEARELASVALPENEPGDVD 118

Query: 138 IA 139
            A
Sbjct: 119 DA 120

Length = 136

>gnl|CDD|184055 PRK13442, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 39  KQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII 98
             V   +  G  GILP H P L +L+ G +TV    G      V  G I+ + +  + ++
Sbjct: 23  TMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSN-KLTVL 81

Query: 99  AEEAHPVD 106
           AE A  V 
Sbjct: 82  AERAELVA 89

Length = 89

>gnl|CDD|235750 PRK06228, PRK06228, F0F1 ATP synthase subunit epsilon; Validated

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEG--- 75
            M+  +    +VF   + V ++   +  G+FG+LP+ +  +A L PG I VYETE    
Sbjct: 1  ASMNLKILLPFEVFAEKKGVTRIVAETREGSFGLLPHRLDCVAALVPG-ILVYETEAEGE 59

Query: 76 ----VSQKIFVSSGT 86
              V + I V +G 
Sbjct: 60 VYVAVDEGILVKTGP 74

Length = 131

>gnl|CDD|184057 PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 38  VKQVDVPSF-----SGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDD 92
           V ++D+ S      SG FGILP H   L +L+  V+     +G +    V  G + V   
Sbjct: 13  VDELDIVSLRAEDASGGFGILPGHADFLTVLRASVVRWRRADGATHYCAVRGGVLRVTGG 72

Query: 93  SSVQIIAEEAHPVDSLDA 110
           + V+I   EA   + L  
Sbjct: 73  ARVEIACREAVLGEDLAR 90

Length = 136

>gnl|CDD|234796 PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 148 IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIA 207
           I VS G + V  D  V ++A+ A   D +D + A +   +A+  L +   +   A AQ A
Sbjct: 62  IAVSGGFLEVQPDK-VTVLADSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAA 120

Query: 208 VEVAEALVAAA 218
           +  A A +  A
Sbjct: 121 LARAIARLRVA 131

Length = 135

>gnl|CDD|100879 PRK01474, atpC, F0F1 ATP synthase subunit epsilon; Validated

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 39  KQVDVPSFSGAFGILPNHVPTLAILKPGVITVY-ETEGVSQKIFVSSGTITVNDDSSVQI 97
           K V +P   G FG+LP+HVP +  LK G++ VY +    S+  ++ SG +T    + + I
Sbjct: 22  KMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHKSENTYLISGGVTEVTGNYINI 81

Query: 98  IAEEAHPVDSLDASAARDVLSKAQSELS 125
             E A  V +L  +     L   Q  LS
Sbjct: 82  ATETAINVTNLSEAEIATKLLDLQKTLS 109

Length = 112

>gnl|CDD|223432 COG0355, AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 144 EALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAE 203
           +  KI VS G + V   + V I+A+ A   D +D + A +   +A+ EL SA  +     
Sbjct: 59  KEEKIAVSGGFLEV-QPNEVTILADSAERADDIDEARAEEAKERAEKELESAKDDKDYRR 117

Query: 204 AQIAVEVAEALVAAAS 219
           A+ A+  A A +  A 
Sbjct: 118 AEAALARALARLRVAE 133

Length = 135

>gnl|CDD|184056 PRK13446, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
            + V+ G   V+++  V ++AE A   + +D   AR  L +A+  L   + E   A A+ 
Sbjct: 61  YVAVNGGFAEVSNNK-VTVLAETAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEA 119

Query: 207 AVEVAEALVAAAS 219
           A+E A   +  A 
Sbjct: 120 ALERALIRLQVAG 132

Length = 136

>gnl|CDD|130283 TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon subunit (delta in mitochondria)

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 148 IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIA 207
           I VS G   V     V I+A+ A   D +D + A   L  A+  L SA  +   AEA + 
Sbjct: 60  IAVSGGFAEV-QPDKVTILADGAVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLK 118

Query: 208 VEVAEALVAAA 218
           ++ A A + A 
Sbjct: 119 LKKARAQLEAL 129

This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation [Energy metabolism, ATP-proton motive force interconversion]. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
PRK00539	133	atpC F0F1 ATP synthase subunit epsilon; Validated	100.0
PRK13450	132	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK13446	136	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK00571	135	atpC F0F1 ATP synthase subunit epsilon; Validated	100.0
CHL00063	134	atpE ATP synthase CF1 epsilon subunit	100.0
TIGR01216	130	ATP_synt_epsi ATP synthase, F1 epsilon subunit (de	100.0
COG0355	135	AtpC F0F1-type ATP synthase, epsilon subunit (mito	100.0
PRK13452	145	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK14735	139	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK14736	133	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK13444	127	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
KOG1758|consensus	159		99.97
PRK01474	112	atpC F0F1 ATP synthase subunit epsilon; Validated	99.97
PRK13448	135	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.97
PRK13443	136	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.97
PRK13451	101	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.97
PRK06228	131	F0F1 ATP synthase subunit epsilon; Validated	99.95
PRK13442	89	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.94
PRK13447	136	F0F1 ATP synthase subunit epsilon; Provisional	99.94
TIGR03166	122	alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit	99.94
PRK13449	88	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.93
PF02823	80	ATP-synt_DE_N: ATP synthase, Delta/Epsilon chain,	99.93
KOG1758|consensus	159		99.84
PRK14736	133	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.77
PRK00539	133	atpC F0F1 ATP synthase subunit epsilon; Validated	99.75
COG0355	135	AtpC F0F1-type ATP synthase, epsilon subunit (mito	99.75
CHL00063	134	atpE ATP synthase CF1 epsilon subunit	99.74
PRK13452	145	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.72
PRK14735	139	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.71
PRK13448	135	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.71
PRK00571	135	atpC F0F1 ATP synthase subunit epsilon; Validated	99.69
PRK13446	136	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.69
TIGR01216	130	ATP_synt_epsi ATP synthase, F1 epsilon subunit (de	99.69
PRK13443	136	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.68
PRK13450	132	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.68
PRK13444	127	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.59
PRK01474	112	atpC F0F1 ATP synthase subunit epsilon; Validated	99.56
PRK13451	101	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.55
PRK13447	136	F0F1 ATP synthase subunit epsilon; Provisional	99.25
TIGR03166	122	alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit	99.25
PRK06228	131	F0F1 ATP synthase subunit epsilon; Validated	99.23
PRK13449	88	atpC F0F1 ATP synthase subunit epsilon; Provisiona	98.79
PRK13442	89	atpC F0F1 ATP synthase subunit epsilon; Provisiona	98.78
PF02823	80	ATP-synt_DE_N: ATP synthase, Delta/Epsilon chain,	98.46
PF00401	48	ATP-synt_DE: ATP synthase, Delta/Epsilon chain, lo	97.5
PF00401	48	ATP-synt_DE: ATP synthase, Delta/Epsilon chain, lo	97.33
PRK10579	94	hypothetical protein; Provisional	85.26

>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated

Probab=100.00  E-value=2.6e-34  Score=227.34  Aligned_cols=128  Identities=12%  Similarity=0.176  Sum_probs=121.8

Q ss_pred             cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917          19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII   98 (219)
Q Consensus        19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il   98 (219)
                      .+|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+|.++.++++|||++|.+| .|+||
T Consensus         2 ~~~~l~IvTP~~~~~~~-~v~~V~l~t~~G~~gIL~~Haplit~L~~G~~~i~~~~~~~~~~~v~gGf~ev~~n-~v~Il   79 (133)
T PRK00539          2 QMLRFLVLSPSGIKLDE-KIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFADKTKRSAIIGAGLLLIKKT-EAKIF   79 (133)
T ss_pred             CccEEEEEcCCCeEEec-eEEEEEEecCccCceecCCCcceEeEecceEEEEEECCCcEEEEEEeeeEEEEECC-EEEEE
Confidence            36999999999999999 99999999999999999999999999999999998767788889999999999988 89999


Q ss_pred             eCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhh
Q psy9917          99 AEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKI  148 (219)
Q Consensus        99 a~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~  148 (219)
                      ++.+.+.++||..+++..+++|+++|++..++.++.+++.+|+++..++.
T Consensus        80 ad~ae~~eeID~~~a~~a~erAe~~L~~~~~~~~~~~a~~~L~ra~~Rl~  129 (133)
T PRK00539         80 TENFVFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNLMFELLKLS  129 (133)
T ss_pred             ECeEEchhhCCHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998888999999999999998864

>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=5.4e-34  Score=225.42  Aligned_cols=129  Identities=29%  Similarity=0.484  Sum_probs=122.7

Q ss_pred             ccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEE
Q psy9917          18 ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI   97 (219)
Q Consensus        18 a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~I   97 (219)
                      |++|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|+||+++|+..+|.++.|+++|||++|.+| .+.|
T Consensus         1 ~~~l~l~IvtP~~~~~~~-~v~~V~~p~~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gGf~~v~~~-~v~I   78 (132)
T PRK13450          1 ANNIKLTILTPEKNFYIG-EVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVENN-EVYI   78 (132)
T ss_pred             CCeEEEEEEcCCceEEec-eEEEEEEECCccCceecCCCcccEeEEccEEEEEEECCCcEEEEEEcCeEEEEECC-EEEE
Confidence            578999999999999998 99999999999999999999999999999999999878888999999999999987 7999


Q ss_pred             eeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhh
Q psy9917          98 IAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIF  149 (219)
Q Consensus        98 la~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~  149 (219)
                      +++++.+.++||..+++..+++|+++| +..+..++.+++.+++++..++..
T Consensus        79 l~~~a~~~~~ID~~~a~~~~~~A~~~l-~~~~~~~~~~a~~~l~ra~~rl~~  129 (132)
T PRK13450         79 LCDASEWPEEIDIKRAENAKKRAEERL-RKKDEIDVKRAELALFRAIARIKL  129 (132)
T ss_pred             EehhhcccccCCHHHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999 666888999999999999998765

>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=5.9e-34  Score=226.25  Aligned_cols=131  Identities=28%  Similarity=0.453  Sum_probs=124.8

Q ss_pred             cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917          17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ   96 (219)
Q Consensus        17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~   96 (219)
                      |+++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. +|.++.|+++|||++|+++ .|.
T Consensus         1 m~~~l~l~IvTP~~~~~~~-~v~~V~lpt~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gG~~~v~~~-~v~   77 (136)
T PRK13446          1 MAKKLKLEIVTPEKKVLSE-EVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKK-GGKTHYVAVNGGFAEVSNN-KVT   77 (136)
T ss_pred             CCCccEEEEEcCCceEEee-eEEEEEEEcCccCeEEcCCCcceEEEeeccEEEEEe-CCcEEEEEEcCEEEEEECC-EEE
Confidence            7889999999999999998 999999999999999999999999999999999985 7788899999999999987 799


Q ss_pred             EeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917          97 IIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV  150 (219)
Q Consensus        97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V  150 (219)
                      |+++.+.+.++||+.+++..+++|+++|++..++.++.+++.+++++..++...
T Consensus        78 Il~~~a~~~~~iD~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~a~~rl~~~  131 (136)
T PRK13446         78 VLAETAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALERALIRLQVA  131 (136)
T ss_pred             EEeeeEEEhhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888899999999999999998764

>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated

Probab=100.00  E-value=1.2e-33  Score=224.06  Aligned_cols=131  Identities=31%  Similarity=0.496  Sum_probs=124.7

Q ss_pred             ccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEee
Q psy9917          20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIA   99 (219)
Q Consensus        20 ~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila   99 (219)
                      +|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+|.+++|+++|||++|.+| .|.|++
T Consensus         3 ~l~l~ivtP~~~~~~~-~v~~v~~~~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gG~~~v~~n-~v~Ila   80 (135)
T PRK00571          3 TLTVDIVSPEGLIYSG-EVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPD-KVTVLA   80 (135)
T ss_pred             eEEEEEEcCCCcEEee-eEEEEEEEcCccCeeecCCCcceEEEeeceEEEEEECCCcEEEEEEccEEEEEECC-EEEEEE
Confidence            7999999999999998 99999999999999999999999999999999999867788899999999999987 899999


Q ss_pred             CcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhcc
Q psy9917         100 EEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSS  152 (219)
Q Consensus       100 ~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~Vsg  152 (219)
                      +++.+.++||+.+++..+++|+++|++..++.++.+++.+++++.+++...++
T Consensus        81 ~~a~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~rl~~~~~  133 (135)
T PRK00571         81 DSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAEK  133 (135)
T ss_pred             eeEEEhhhCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999988899999999999999999887543

>CHL00063 atpE ATP synthase CF1 epsilon subunit

Probab=100.00  E-value=4.5e-33  Score=220.65  Aligned_cols=127  Identities=23%  Similarity=0.414  Sum_probs=121.4

Q ss_pred             ccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEee
Q psy9917          20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIA   99 (219)
Q Consensus        20 ~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila   99 (219)
                      +|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. +|.+++|+++|||++|.+| .|.|++
T Consensus         2 ~l~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gIL~~H~p~it~L~~G~l~i~~-~~~~~~~~v~gG~~~v~~~-~v~Il~   78 (134)
T CHL00063          2 TLNLRVLTPNRIVWDS-EVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRL-NDQWLTMALMGGFARIGNN-EITILV   78 (134)
T ss_pred             eEEEEEEcCCceEEee-eEEEEEEEcCccCceecCCCcceEeEecceEEEEEE-CCeEEEEEEcceEEEEECC-EEEEEE
Confidence            5899999999999998 999999999999999999999999999999999985 6788899999999999987 899999


Q ss_pred             CcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhh
Q psy9917         100 EEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIF  149 (219)
Q Consensus       100 ~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~  149 (219)
                      +.+.+.++||..+++..+++|+++|++..++.++.+++.+++++.+++.+
T Consensus        79 ~~a~~~~dID~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~ra~arl~~  128 (134)
T CHL00063         79 NDAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARARVEA  128 (134)
T ss_pred             CeeEchhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988889999999999999998875

>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria)

Probab=100.00  E-value=4.2e-33  Score=219.76  Aligned_cols=128  Identities=30%  Similarity=0.442  Sum_probs=123.0

Q ss_pred             ccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEee
Q psy9917          20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIA   99 (219)
Q Consensus        20 ~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila   99 (219)
                      +|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+|.+++|+++|||++|.+| .|.|++
T Consensus         1 ~~~l~IvtP~~~~~~~-~v~~v~~~t~~G~~giL~~H~p~i~~L~~G~v~i~~~~~~~~~~~v~gG~~~v~~~-~v~Il~   78 (130)
T TIGR01216         1 TLKLEIVTPEGEIYSG-EVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPD-KVTILA   78 (130)
T ss_pred             CEEEEEEcCCceEEee-eEEEEEEECCcCCeeecCCChhhEeEecceEEEEEECCCCEEEEEEcCcEEEEECC-EEEEEE
Confidence            5899999999999998 99999999999999999999999999999999999778888999999999999987 899999


Q ss_pred             CcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhh
Q psy9917         100 EEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIF  149 (219)
Q Consensus       100 ~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~  149 (219)
                      +.+.+.++||+.+++..+++|+++|++..++.++.+++.+++++.+++.+
T Consensus        79 ~~a~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~rl~~  128 (130)
T TIGR01216        79 DGAVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEA  128 (130)
T ss_pred             eEEEEcccCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988999999999999999999865

This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.

>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]

Probab=100.00  E-value=5.4e-33  Score=220.06  Aligned_cols=131  Identities=33%  Similarity=0.534  Sum_probs=123.3

Q ss_pred             cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCC-eEEEEEEecCeEEEecCceE
Q psy9917          17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEG-VSQKIFVSSGTITVNDDSSV   95 (219)
Q Consensus        17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g-~~~~~~vsgG~~~V~~~g~v   95 (219)
                      |+. |+|+|+||++.+|++ +|++|++||++|+|||||||+|+|+.|.||+++|+..++ ++..|+++|||++|.++ +|
T Consensus         1 M~~-l~l~IVsP~~~i~~g-~v~~V~~~t~eGe~GILp~H~Plit~Lk~g~v~i~~~~~~~~~~i~VsgGfleV~~~-~v   77 (135)
T COG0355           1 MAE-LKLEIVSPEGIIYSG-EVKSVVVPTTEGELGILPGHAPLITALKPGVVRIKTEDGDKEEKIAVSGGFLEVQPN-EV   77 (135)
T ss_pred             CCc-eEEEEEcCCceEEee-EEEEEEEecCCeeeecCCCCccceeeecCcEEEEEEcCCCceEEEEEeccEEEEeCC-EE
Confidence            566 999999999999999 999999999999999999999999999999999999874 56799999999999987 89


Q ss_pred             EEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917          96 QIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV  150 (219)
Q Consensus        96 ~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V  150 (219)
                      +|+++.+.+.++||+.+++..+++|++.+++..++.++.+++.++.++.+++...
T Consensus        78 tIlad~A~~~~did~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~al~~L~~~  132 (135)
T COG0355          78 TILADSAERADDIDEARAEEAKERAEKELESAKDDKDYRRAEAALARALARLRVA  132 (135)
T ss_pred             EEEEceeEecccCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999988889999999999998887653

>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=1.3e-32  Score=220.65  Aligned_cols=129  Identities=19%  Similarity=0.309  Sum_probs=120.5

Q ss_pred             cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917          19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII   98 (219)
Q Consensus        19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il   98 (219)
                      ++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. +|+|..|+++|||++|.+| .++||
T Consensus         4 ~~l~l~IvtP~~~~~~g-~v~~V~lp~~~G~~GILp~H~plit~L~~G~l~i~~-~~~~~~~~v~gGf~eV~~n-~v~Il   80 (145)
T PRK13452          4 KYLKVDVVSPLGSVFKG-EADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRK-DQHTDVLYVSGGIVEVTPT-RVTIM   80 (145)
T ss_pred             cEEEEEEEcCCceEEec-eeEEEEEEcCccCeEecCCCcceEeeecceEEEEEE-CCcEEEEEEcceEEEEECC-EEEEE
Confidence            57999999999999998 999999999999999999999999999999999985 6778889999999999987 89999


Q ss_pred             eCcccCCCCCCHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917          99 AEEAHPVDSLDASAARDVLSKAQSELSS-ASSETAKAEAQIAVEVAEALKIFV  150 (219)
Q Consensus        99 a~~a~~~~~Id~~~~~~~~e~a~~~l~~-~~~~~~~~~~~~~l~~~~~~l~~V  150 (219)
                      ++.+.+.++||+.+++..+++|+++|++ ..+..++.+++.+++++..++.++
T Consensus        81 ad~ae~~~eID~~~ae~a~~~Ae~~L~~~~~~~~~~~~a~~~L~rA~~Rl~~~  133 (145)
T PRK13452         81 VDDMERAENLNQAEAEKARARAKEVLKNPDASKLDIEAANKRLKEADARLKAL  133 (145)
T ss_pred             eCeeeccccCCHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988 446677889999999999988753

>PRK14735 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=1.4e-32  Score=219.16  Aligned_cols=128  Identities=26%  Similarity=0.433  Sum_probs=121.8

Q ss_pred             ccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEee
Q psy9917          20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIA   99 (219)
Q Consensus        20 ~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila   99 (219)
                      +|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. +|.|..|+++|||++|.+| .|+|++
T Consensus         2 ~l~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gILp~H~P~it~L~~G~v~i~~-~g~~~~~~v~gGf~ev~~~-~v~Ila   78 (139)
T PRK14735          2 PIHLEIVTAERVVLSD-DVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVK-NGVRTPFAISGGFMEVLPH-RVTILA   78 (139)
T ss_pred             eEEEEEECCCccEEee-eEEEEEEecCccCeeEcCCCcceEEEecceEEEEEE-CCeEEEEEEcccEEEEeCC-EEEEEe
Confidence            6899999999999998 999999999999999999999999999999999985 7888899999999999987 799999


Q ss_pred             CcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917         100 EEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV  150 (219)
Q Consensus       100 ~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V  150 (219)
                      +++.+.++||..+++..+++|+++|++..+..++.+++.+++++.+++.+.
T Consensus        79 ~~a~~~edID~~~a~~a~e~Ae~~l~~~~~~~~~~~a~~~L~ra~arl~~~  129 (139)
T PRK14735         79 DTAERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRAMVRLRVA  129 (139)
T ss_pred             eeEEEcccCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888889999999999999998764

>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=1.8e-32  Score=216.81  Aligned_cols=127  Identities=28%  Similarity=0.479  Sum_probs=118.8

Q ss_pred             cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917          17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ   96 (219)
Q Consensus        17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~   96 (219)
                      |+ +|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+|+|++|+++|||++|.+| .|+
T Consensus         1 Ma-~~~l~IvTP~~~~~~~-~v~~V~vp~~~G~~gILp~H~P~it~L~~G~l~i~~~~~~~~~~~v~gGf~eV~~n-~v~   77 (133)
T PRK14736          1 MA-TFHFDLVGPERTLYSG-EVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIYVRGGFAEIGPT-SVT   77 (133)
T ss_pred             CC-ceEEEEEcCCccEEee-eeEEEEEecCccCeeEcCCChhhEeEecceEEEEEECCCcEEEEEEeceEEEEECC-EEE
Confidence            55 7999999999999998 99999999999999999999999999999999998778888999999999999988 899


Q ss_pred             EeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q psy9917          97 IIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL  146 (219)
Q Consensus        97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~  146 (219)
                      |+++.+.+.++||+++++..+++|++.+..+.++..+.+++..+...+..
T Consensus        78 Ila~~ae~~eeID~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~~~  127 (133)
T PRK14736         78 VLAERAAPVEELTPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQEA  127 (133)
T ss_pred             EEeeeeEEhhhCCHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999989998898888877665543

>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=2.6e-32  Score=214.44  Aligned_cols=123  Identities=24%  Similarity=0.451  Sum_probs=112.6

Q ss_pred             cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917          17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ   96 (219)
Q Consensus        17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~   96 (219)
                      |+++|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. +|.+..|+++|||++|.+| .+.
T Consensus         2 Ma~~~~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gG~~~v~~~-~v~   78 (127)
T PRK13444          2 MAKKLTVSVISPEKILYKG-EVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRK-GEKLKRISVEGGFCEVKDN-QIS   78 (127)
T ss_pred             CCCceEEEEEcCCceEEec-eEEEEEEECCccCeEecCCCcCeEeEeccEEEEEEE-CCeEEEEEEeceEEEEECC-EEE
Confidence            7889999999999999998 999999999999999999999999999999999986 7788899999999999987 899


Q ss_pred             EeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhh
Q psy9917          97 IIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIF  149 (219)
Q Consensus        97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~  149 (219)
                      |+++.+.+.++||..+++..+++|+++|++ .++      +..++++..++..
T Consensus        79 Il~~~a~~~~diD~~~a~~~~~~Ae~~l~~-~~~------~~~l~ra~~rl~~  124 (127)
T PRK13444         79 ILTDHGALKEDIDHEHEKKLLAEAEKLPPS-DSK------NLLLQKTKTRILV  124 (127)
T ss_pred             EEEeEEEehhhCCHHHHHHHHHHHHHHHhC-Cch------HHHHHHHHHHHHh
Confidence            999999999999999999999999999987 322      5557777777654

>KOG1758|consensus

Probab=99.97  E-value=7.1e-31  Score=207.31  Aligned_cols=132  Identities=52%  Similarity=0.732  Sum_probs=126.4

Q ss_pred             cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917          19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII   98 (219)
Q Consensus        19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il   98 (219)
                      ++|+|.+.+|+..+|++.+|++|.+||.+|+||||+||.|+++.|+||++.|+.++|...+||++|||+.|+.|+++.|+
T Consensus        27 ~~L~l~fa~P~~t~~~~a~V~qVdvPt~sG~~GVLanHVPti~~LkPGvvsV~~~~~~~~k~FvSsGfa~v~~ds~~~il  106 (159)
T KOG1758|consen   27 EKLKLTFALPNTTVYDGAEVTQVDVPTLSGQIGVLANHVPTIQVLKPGVVSVHEGSGTKSKYFVSSGFATVNADSSLQIL  106 (159)
T ss_pred             ceeEEEEecCceEEecCceeEEEeccccCcceeeecccCcchheeccceEEEEeCCCcEEEEEEecceEEEcCCCeEEEE
Confidence            68999999999999999899999999999999999999999999999999999977766699999999999988899999


Q ss_pred             eCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917          99 AEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV  150 (219)
Q Consensus        99 a~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V  150 (219)
                      +..+..+++||++.++..++.++.++.++.|+.+++++++++++++++..+.
T Consensus       107 a~EA~~ledid~~~a~q~Le~aqa~l~~a~de~~~AEA~I~vev~ealv~Al  158 (159)
T KOG1758|consen  107 AEEAVKLEDIDPSEAQQLLEKAQAKLVSASDEREAAEAQIRVEVAEALVKAL  158 (159)
T ss_pred             ehhccccccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999988764

>PRK01474 atpC F0F1 ATP synthase subunit epsilon; Validated

Probab=99.97  E-value=3.4e-31  Score=203.93  Aligned_cols=108  Identities=26%  Similarity=0.450  Sum_probs=101.7

Q ss_pred             cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcC--CeEEEEEEecCeEEEecCce
Q psy9917          17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETE--GVSQKIFVSSGTITVNDDSS   94 (219)
Q Consensus        17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~--g~~~~~~vsgG~~~V~~~g~   94 (219)
                      |+++|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+  |++.+|+++|||++|.+| .
T Consensus         1 m~~~~~l~IvTP~~~~~~~-~v~~V~lp~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~~~v~gGf~~v~~n-~   78 (112)
T PRK01474          1 MNETILVKIITPLSIAFEK-QAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHKSENTYLISGGVTEVTGN-Y   78 (112)
T ss_pred             CCceEEEEEEcCCceEEee-eEEEEEEEcCccCceecCCCcceEEEecceEEEEEECCCCCcEEEEEEcceEEEEECC-E
Confidence            7889999999999999998 99999999999999999999999999999999998644  577889999999999987 8


Q ss_pred             EEEeeCcccCCCCCCHHHHHHHHHHHHHHhhc
Q psy9917          95 VQIIAEEAHPVDSLDASAARDVLSKAQSELSS  126 (219)
Q Consensus        95 v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~  126 (219)
                      ++|+++.+.+.++||+.+++..+++|+++|+.
T Consensus        79 v~Ila~~a~~~~~ID~~~a~~~~~~A~~~l~~  110 (112)
T PRK01474         79 INIATETAINVTNLSEAEIATKLLDLQKTLSD  110 (112)
T ss_pred             EEEEeCeeEEhhhCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999998864

>PRK13448 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.97  E-value=1.2e-30  Score=207.04  Aligned_cols=108  Identities=31%  Similarity=0.602  Sum_probs=101.8

Q ss_pred             cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917          17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ   96 (219)
Q Consensus        17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~   96 (219)
                      |+ +|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. +|+++.|+++|||++|.+| .++
T Consensus         1 Ma-~~~l~IvtPe~~~~~~-~v~~V~~p~~~G~~gILp~H~p~it~L~pG~v~i~~-~~~~~~~~v~gGf~eV~~~-~v~   76 (135)
T PRK13448          1 MA-TFHFDLVSPEKLAFSG-EVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTA-GGNQQKIVVLGGLAEVSEK-GLT   76 (135)
T ss_pred             CC-eeEEEEEcCCccEEee-eEEEEEEEcCccCeEEcCCCcceEeEeccEEEEEEE-CCcEEEEEEeccEEEEECC-EEE
Confidence            55 7999999999999998 999999999999999999999999999999999985 6677789999999999987 799


Q ss_pred             EeeCcccCCCCCCHHHHHHHHHHHHHHhhcCC
Q psy9917          97 IIAEEAHPVDSLDASAARDVLSKAQSELSSAS  128 (219)
Q Consensus        97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~  128 (219)
                      |+++++.+.++||+.+++..+++|+++|++..
T Consensus        77 Ila~~a~~~~dID~~~a~~~~~~Ae~~l~~~~  108 (135)
T PRK13448         77 VLADVATSVADLDLAQFAATIAEMEAQLAGKV  108 (135)
T ss_pred             EEEeeeEEcccCCHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999998753

>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.97  E-value=7.3e-31  Score=208.12  Aligned_cols=111  Identities=26%  Similarity=0.472  Sum_probs=103.8

Q ss_pred             cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917          17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ   96 (219)
Q Consensus        17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~   96 (219)
                      |+++|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|+||+++|+..++. ..|+++|||++|++| .|+
T Consensus         1 M~~~l~l~IVTP~~~~~~g-ev~~V~lpt~~Ge~GILp~H~Plit~L~pG~v~i~~~~~~-~~~avsgGf~eV~~n-~V~   77 (136)
T PRK13443          1 MAGTLQFDLVSPERRLASF-QATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGT-QEYAVTGGFAEINAT-SIS   77 (136)
T ss_pred             CCCeeEEEEEcCCceEEec-eEEEEEEecCccCeeEcCCCcceEEEecceEEEEEECCCe-EEEEEcceEEEEECC-EEE
Confidence            6788999999999999998 9999999999999999999999999999999999875554 459999999999988 799


Q ss_pred             EeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCH
Q psy9917          97 IIAEEAHPVDSLDASAARDVLSKAQSELSSASSE  130 (219)
Q Consensus        97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~  130 (219)
                      |+++++.+.++||..+++..+++|+++|++..++
T Consensus        78 Ilad~a~~~edID~~~a~~a~~~Ae~~l~~~~~~  111 (136)
T PRK13443         78 VLAEKAIPVEELTGAVLDEFIAEARELASVALPE  111 (136)
T ss_pred             EEeCeeEEhhhCCHHHHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999999999986544

>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.97  E-value=6.2e-30  Score=193.55  Aligned_cols=99  Identities=19%  Similarity=0.303  Sum_probs=94.0

Q ss_pred             cEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEeeC
Q psy9917          21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAE  100 (219)
Q Consensus        21 l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila~  100 (219)
                      |+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|+||+++|+. +++++.|+++|||++|++| .++|+++
T Consensus         1 m~l~IvtP~~~~~~~-~v~~V~~pt~~G~~GILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~-~v~Il~~   77 (101)
T PRK13451          1 MKVKIVTPYGIVYDR-ESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKS-GDDEYEYKVADGFLHCDGK-NVIIITE   77 (101)
T ss_pred             CEEEEEcCCceEEec-eeEEEEEEcCccCeEEcCCCcceEEEecceEEEEEE-CCcEEEEEEeccEEEEECC-EEEEEEe
Confidence            789999999999998 999999999999999999999999999999999986 5677889999999999987 8999999


Q ss_pred             cccCCCCCCHHHHHHHHHHHHH
Q psy9917         101 EAHPVDSLDASAARDVLSKAQS  122 (219)
Q Consensus       101 ~a~~~~~Id~~~~~~~~e~a~~  122 (219)
                      ++.+.++||++++++.+++|++
T Consensus        78 ~a~~~e~ID~~~a~~a~~~Ae~   99 (101)
T PRK13451         78 EAGREEEISPHRYLGARERVER   99 (101)
T ss_pred             EeEehhhCCHHHHHHHHHHhhc
Confidence            9999999999999999998765

>PRK06228 F0F1 ATP synthase subunit epsilon; Validated

Probab=99.95  E-value=8.2e-27  Score=184.00  Aligned_cols=101  Identities=20%  Similarity=0.318  Sum_probs=90.8

Q ss_pred             ccEEEEEecCceeeecCc-eeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917          20 QMDFTLASGNKVFYTNQN-VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII   98 (219)
Q Consensus        20 ~l~l~IvTP~~~~~~~~~-v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il   98 (219)
                      .|+|+|+||++++|++ + |++|++||.+|+|||||||+|+|+.|.||+++|+..+|+|++|+++|||++|.+| .++|+
T Consensus         2 ~~~l~IvTP~~~~~~g-~~v~~V~lpt~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~av~gGf~ev~~n-~V~Il   79 (131)
T PRK06228          2 SMNLKILLPFEVFAEK-KGVTRIVAETREGSFGLLPHRLDCVAALVPGILVYETEAEGEVYVAVDEGILVKTGP-DVLVS   79 (131)
T ss_pred             ceEEEEEcCCeeEECC-CcEEEEEEEcCccCeEECCCCcceEeeecceEEEEEECCCcEEEEEEcceEEEEECC-EEEEE
Confidence            5899999999999999 7 9999999999999999999999999999999998767788999999999999987 89999


Q ss_pred             eCcccCCCCCCHHHHHHHHHHHHHHh
Q psy9917          99 AEEAHPVDSLDASAARDVLSKAQSEL  124 (219)
Q Consensus        99 a~~a~~~~~Id~~~~~~~~e~a~~~l  124 (219)
                      ++++.+.++||  ++...++++.+.+
T Consensus        80 ad~ae~~edid--~~~~~l~~~~~~~  103 (131)
T PRK06228         80 VRNAIGGTDLG--ELREAVEQEFLTL  103 (131)
T ss_pred             EceeEchhhHH--HHHHHHHHHHHhh
Confidence            99999999875  4666666654433

>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.94  E-value=6.4e-27  Score=173.24  Aligned_cols=85  Identities=25%  Similarity=0.474  Sum_probs=80.8

Q ss_pred             cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917          19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII   98 (219)
Q Consensus        19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il   98 (219)
                      ++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|.||+++|+..++++++|+++|||++|.+| ++.|+
T Consensus         4 ~~~~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gG~~~v~~n-~v~Il   81 (89)
T PRK13442          4 ATLHVNIVAADRPVWSG-EATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSN-KLTVL   81 (89)
T ss_pred             CEEEEEEEcCCccEEec-eeEEEEEECCcCCcEecCCCcCeEEEEcceEEEEEECCCcEEEEEEccEEEEEECC-EEEEE
Confidence            57999999999999998 99999999999999999999999999999999999777888999999999999987 89999


Q ss_pred             eCcccCC
Q psy9917          99 AEEAHPV  105 (219)
Q Consensus        99 a~~a~~~  105 (219)
                      ++++++.
T Consensus        82 ~~~ae~~   88 (89)
T PRK13442         82 AERAELV   88 (89)
T ss_pred             EeEEEEC
Confidence            9999874

>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.94  E-value=3e-26  Score=181.79  Aligned_cols=128  Identities=20%  Similarity=0.266  Sum_probs=99.2

Q ss_pred             cEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEeeC
Q psy9917          21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAE  100 (219)
Q Consensus        21 l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila~  100 (219)
                      |+|+|+||++++|++.++.+|.+||.+|+|||||||+|+|+.|.||+++|+..+|.|++++++|||++|.+++.|+|+++
T Consensus         1 ~~L~IVTP~~~~~~g~~v~~V~~~t~~G~~GILp~HaPlit~L~~G~l~i~~~~g~~~~~aVsGGfleV~~~n~V~Ilad   80 (136)
T PRK13447          1 LRLTIATPLAVVVDELDIVSLRAEDASGGFGILPGHADFLTVLRASVVRWRRADGATHYCAVRGGVLRVTGGARVEIACR   80 (136)
T ss_pred             CEEEEEcCCeeEECCCcEEEEEecCCcCceEEcCCCcceEeEecceEEEEEECCCcEEEEEEeCcEEEEecCCEEEEEec
Confidence            78999999999999734999999999999999999999999999999999877888899999999999983348999999


Q ss_pred             cccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhcc
Q psy9917         101 EAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSS  152 (219)
Q Consensus       101 ~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~Vsg  152 (219)
                      ++.+.++||..+++....  ++.+++  ....-..+..+++....|.+...+
T Consensus        81 ~ae~~edID~~~a~i~~~--~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~  128 (136)
T PRK13447         81 EAVLGEDLARLEAVVRAV--RAAQLD--AARRARVEQTRLHAQAVRQLLRYL  128 (136)
T ss_pred             eeEchhhcCHHHHHHHHH--HHhhhH--HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999655554333  222221  111122333556655555444333

>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon

Probab=99.94  E-value=2.9e-26  Score=178.92  Aligned_cols=97  Identities=22%  Similarity=0.375  Sum_probs=86.8

Q ss_pred             EEEEEecCceeee-cCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEeeC
Q psy9917          22 DFTLASGNKVFYT-NQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAE  100 (219)
Q Consensus        22 ~l~IvTP~~~~~~-~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila~  100 (219)
                      +|+|+||++++|+ + +|++|++||.+|+|||||||+|+|+.|.||+++|+..+|+|++++++|||++|.+| .++|+++
T Consensus         1 ~l~IvtP~~~~~~~~-~v~~v~~~~~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~av~gGf~~v~~n-~v~Il~~   78 (122)
T TIGR03166         1 RLKILTPFRVFLDKL-PVTRIVAETESGSFGLLPGHVDCVAALVPGILIYETADGGEHYVAVDQGILVKRGA-DVEVSVR   78 (122)
T ss_pred             CeEEECCCeeEEecC-cEEEEEEEcCcCCeEEcCCCcCeEeEeccEEEEEEECCCcEEEEEEeeeEEEEECC-EEEEEec
Confidence            5899999999999 8 99999999999999999999999999999999998777888899999999999987 8999999


Q ss_pred             cccCCCCCCHHHHHHHHHHHHH
Q psy9917         101 EAHPVDSLDASAARDVLSKAQS  122 (219)
Q Consensus       101 ~a~~~~~Id~~~~~~~~e~a~~  122 (219)
                      ++.+.++||.  +...++.+..
T Consensus        79 ~ae~~edId~--l~~~i~~~~~   98 (122)
T TIGR03166        79 NAVGGTELEE--LEEAVRQEFL   98 (122)
T ss_pred             eeEcccCHHH--HHHHHHHHHH
Confidence            9999999953  4444444433

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.

>PRK13449 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.93  E-value=4.4e-26  Score=168.42  Aligned_cols=84  Identities=30%  Similarity=0.579  Sum_probs=77.7

Q ss_pred             cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcC-CeEEEEEEecCeEEEecCceEEE
Q psy9917          19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETE-GVSQKIFVSSGTITVNDDSSVQI   97 (219)
Q Consensus        19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~-g~~~~~~vsgG~~~V~~~g~v~I   97 (219)
                      ++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|+||.++|+..+ +++++++++|||++|.+| .+.|
T Consensus         2 ~~l~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~~v~gGf~~v~~n-~v~I   79 (88)
T PRK13449          2 AKLHFELVTPERLLRSG-EVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEVFHVQGGFAEVNEK-GLTI   79 (88)
T ss_pred             CeeEEEEEcCCceEEcc-EEEEEEEeCCccCeEEcCCCcceEEEeeceEEEEEECCCCeEEEEEEcceEEEEECC-EEEE
Confidence            47999999999999998 99999999999999999999999999999999998744 457889999999999987 7999


Q ss_pred             eeCcccC
Q psy9917          98 IAEEAHP  104 (219)
Q Consensus        98 la~~a~~  104 (219)
                      ++++++-
T Consensus        80 l~~~ae~   86 (88)
T PRK13449         80 LAEHAVE   86 (88)
T ss_pred             EcceeEE
Confidence            9998864

>PF02823 ATP-synt_DE_N: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; InterPro: IPR020546 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.93  E-value=1.9e-25  Score=161.93  Aligned_cols=80  Identities=36%  Similarity=0.738  Sum_probs=76.1

Q ss_pred             cEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEeeC
Q psy9917          21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAE  100 (219)
Q Consensus        21 l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila~  100 (219)
                      |+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|.||.++|+..||+|+++++++||++|.+| ++.|+++
T Consensus         1 l~l~IvtP~~~~~~~-~v~~v~~~t~~G~~gIl~~H~p~i~~l~~G~~~i~~~~~~~~~~~v~~G~~~v~~n-~v~Il~~   78 (80)
T PF02823_consen    1 LKLKIVTPDGIFFEG-EVESVVLPTTDGEFGILPNHAPFITALKPGELRIKDADGEEKKFAVSGGFLEVKDN-EVTILAD   78 (80)
T ss_dssp             EEEEEEESSSEEEEE-EESEEEEEBSSSEEEEETTS-SEEEEEESEEEEEEESSSEEEEEEESSEEEEEETS-EEEEEES
T ss_pred             CEEEEEcCCceEEee-EEEEEEEECCCcChhhccCCchhheeccceEEEEEEcCCCEEEEEEcCEEEEEECC-EEEEEEc
Confidence            789999999999998 99999999999999999999999999999999999889999999999999999976 9999998


Q ss_pred             cc
Q psy9917         101 EA  102 (219)
Q Consensus       101 ~a  102 (219)
                      +|
T Consensus        79 ~A   80 (80)
T PF02823_consen   79 EA   80 (80)
T ss_dssp             SE
T ss_pred             cC
Confidence            75

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 2WSS_H 1E79_H 2JDI_H 2W6I_H 2W6H_H 2W6J_H 2CK3_H 2V7Q_H 1H8E_H 2XND_H ....

>KOG1758|consensus

Probab=99.84  E-value=2.3e-21  Score=153.45  Aligned_cols=131  Identities=37%  Similarity=0.415  Sum_probs=109.1

Q ss_pred             cCeEEEEEEcCCeEEEEEEec-CeEEEe---cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy9917          64 KPGVITVYETEGVSQKIFVSS-GTITVN---DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIA  139 (219)
Q Consensus        64 ~~G~l~i~~~~g~~~~~~vsg-G~~~V~---~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~  139 (219)
                      .|-.+++...-  ....+.+| .+-+|+   ..|.+|||++|.|.+..++||.+......                    
T Consensus        25 ~~~~L~l~fa~--P~~t~~~~a~V~qVdvPt~sG~~GVLanHVPti~~LkPGvvsV~~~~--------------------   82 (159)
T KOG1758|consen   25 IPEKLKLTFAL--PNTTVYDGAEVTQVDVPTLSGQIGVLANHVPTIQVLKPGVVSVHEGS--------------------   82 (159)
T ss_pred             CCceeEEEEec--CceEEecCceeEEEeccccCcceeeecccCcchheeccceEEEEeCC--------------------
Confidence            34555655531  12234444 566665   56899999999999999999998876541                    


Q ss_pred             HHHHHHhhhhhccceEEEcCCCcEEEEecccccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhC
Q psy9917         140 VEVAEALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS  219 (219)
Q Consensus       140 l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~~  219 (219)
                         .....||+||||+.|+||++++|||++|++++|||+..|++.|++||+++.++.++.++++|+++++++++|++||+
T Consensus        83 ---~~~~k~FvSsGfa~v~~ds~~~ila~EA~~ledid~~~a~q~Le~aqa~l~~a~de~~~AEA~I~vev~ealv~Al~  159 (159)
T KOG1758|consen   83 ---GTKSKYFVSSGFATVNADSSLQILAEEAVKLEDIDPSEAQQLLEKAQAKLVSASDEREAAEAQIRVEVAEALVKALK  159 (159)
T ss_pred             ---CcEEEEEEecceEEEcCCCeEEEEehhccccccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhC
Confidence               22336899999999999999999999999999999999999999999999999999999999999999999999985

>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.77  E-value=2.6e-19  Score=141.69  Aligned_cols=105  Identities=15%  Similarity=0.244  Sum_probs=93.8

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|.++.|++|.++....                       ......++++|||++|+||+ |+||+++|
T Consensus        28 ~~G~~gILp~H~P~it~L~~G~l~i~~~-----------------------~~~~~~~~v~gGf~eV~~n~-v~Ila~~a   83 (133)
T PRK14736         28 SEGEMTVLPGHAPVLTTLKVGVITVTET-----------------------TGNGKRIYVRGGFAEIGPTS-VTVLAERA   83 (133)
T ss_pred             CccCeeEcCCChhhEeEecceEEEEEEC-----------------------CCcEEEEEEeceEEEEECCE-EEEEeeee
Confidence            3689999999999999999999887431                       12344589999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhC
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS  219 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~~  219 (219)
                      ++.++||.+++++++++|++.+.++.++..+.++++.+.+++.+.+.++
T Consensus        84 e~~eeID~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (133)
T PRK14736         84 APVEELTPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQEAKATLS  132 (133)
T ss_pred             EEhhhCCHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999888999999999999999999887764

>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated

Probab=99.75  E-value=7.7e-19  Score=139.03  Aligned_cols=99  Identities=7%  Similarity=0.114  Sum_probs=86.1

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|++|.++....                       ......++|+|||++|+||+ |+||+|.|
T Consensus        28 ~~G~~gIL~~Haplit~L~~G~~~i~~~-----------------------~~~~~~~~v~gGf~ev~~n~-v~Ilad~a   83 (133)
T PRK00539         28 TEGYAGLNRNRAPLIAAIQSHVCKITFA-----------------------DKTKRSAIIGAGLLLIKKTE-AKIFTENF   83 (133)
T ss_pred             CccCceecCCCcceEeEecceEEEEEEC-----------------------CCcEEEEEEeeeEEEEECCE-EEEEECeE
Confidence            4689999999999999999998877431                       12334579999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA  213 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~  213 (219)
                      ++.+|||.++|++++++|+++|++..++.++.+|+..|....+
T Consensus        84 e~~eeID~~~a~~a~erAe~~L~~~~~~~~~~~a~~~L~ra~~  126 (133)
T PRK00539         84 VFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNLMFELL  126 (133)
T ss_pred             EchhhCCHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887788899999988876654

>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]

Probab=99.75  E-value=6.8e-19  Score=139.52  Aligned_cols=97  Identities=25%  Similarity=0.333  Sum_probs=84.3

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|++|||++|+|+++.|.|+.++.....                      ......+||+|||++|+|+. ||||||+|
T Consensus        28 ~eGe~GILp~H~Plit~Lk~g~v~i~~~~----------------------~~~~~~i~VsgGfleV~~~~-vtIlad~A   84 (135)
T COG0355          28 TEGELGILPGHAPLITALKPGVVRIKTED----------------------GDKEEKIAVSGGFLEVQPNE-VTILADSA   84 (135)
T ss_pred             CCeeeecCCCCccceeeecCcEEEEEEcC----------------------CCceEEEEEeccEEEEeCCE-EEEEEcee
Confidence            47899999999999999999998876431                      01335889999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEV  210 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~  210 (219)
                      ++.+|||++++++++++|++.++++.++.++.+|+..|..
T Consensus        85 ~~~~did~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~  124 (135)
T COG0355          85 ERADDIDEARAEEAKERAEKELESAKDDKDYRRAEAALAR  124 (135)
T ss_pred             EecccCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            9999999999999999999999988777788888877653

>CHL00063 atpE ATP synthase CF1 epsilon subunit

Probab=99.74  E-value=1.7e-18  Score=137.21  Aligned_cols=100  Identities=22%  Similarity=0.344  Sum_probs=88.6

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|+||.++...+                        .....++++|||++|++|+ |+||+++|
T Consensus        27 ~~G~~gIL~~H~p~it~L~~G~l~i~~~------------------------~~~~~~~v~gG~~~v~~~~-v~Il~~~a   81 (134)
T CHL00063         27 NSGQIGVLPNHAPIATALDIGVLRIRLN------------------------DQWLTMALMGGFARIGNNE-ITILVNDA   81 (134)
T ss_pred             CccCceecCCCcceEeEecceEEEEEEC------------------------CeEEEEEEcceEEEEECCE-EEEEECee
Confidence            4789999999999999999999887422                        2345589999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALV  215 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~  215 (219)
                      ++.+|||.++|++++++|++.|.+..++.++.+++..|....+-.
T Consensus        82 ~~~~dID~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~ra~arl  126 (134)
T CHL00063         82 EKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARARV  126 (134)
T ss_pred             EchhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988888899999999988876633

>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.72  E-value=6.2e-18  Score=135.68  Aligned_cols=98  Identities=17%  Similarity=0.248  Sum_probs=83.4

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|++|.++....                        .....++++|||++|+||+ ||||++.|
T Consensus        30 ~~G~~GILp~H~plit~L~~G~l~i~~~------------------------~~~~~~~v~gGf~eV~~n~-v~Ilad~a   84 (145)
T PRK13452         30 SAGEMGIAYGHTELLSTLPAGVVNVRKD------------------------QHTDVLYVSGGIVEVTPTR-VTIMVDDM   84 (145)
T ss_pred             CccCeEecCCCcceEeeecceEEEEEEC------------------------CcEEEEEEcceEEEEECCE-EEEEeCee
Confidence            3689999999999999999999887422                        2334589999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSS-ASSETAKAEAQIAVEVAEA  213 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~-~~~~~~~~~a~~~l~~~~~  213 (219)
                      ++.++||.++|++++++|+++|.+ ..++.++.+|+..|....+
T Consensus        85 e~~~eID~~~ae~a~~~Ae~~L~~~~~~~~~~~~a~~~L~rA~~  128 (145)
T PRK13452         85 ERAENLNQAEAEKARARAKEVLKNPDASKLDIEAANKRLKEADA  128 (145)
T ss_pred             eccccCCHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999987 4466778888877776443

>PRK14735 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.71  E-value=6.6e-18  Score=134.66  Aligned_cols=98  Identities=22%  Similarity=0.236  Sum_probs=85.8

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|+||.++...+                        .....++++|||++|+||+ |+||+++|
T Consensus        27 ~~G~~gILp~H~P~it~L~~G~v~i~~~------------------------g~~~~~~v~gGf~ev~~~~-v~Ila~~a   81 (139)
T PRK14735         27 KDGRVGILPRHAPLLTILEPGELDIVKN------------------------GVRTPFAISGGFMEVLPHR-VTILADTA   81 (139)
T ss_pred             CccCeeEcCCCcceEEEecceEEEEEEC------------------------CeEEEEEEcccEEEEeCCE-EEEEeeeE
Confidence            3789999999999999999999887421                        2345589999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA  213 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~  213 (219)
                      ++.+|||.+++++++++|++.|.+..++.++.+++..|....+
T Consensus        82 ~~~edID~~~a~~a~e~Ae~~l~~~~~~~~~~~a~~~L~ra~a  124 (139)
T PRK14735         82 ERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRAMV  124 (139)
T ss_pred             EEcccCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887888889998888776543

>PRK13448 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.71  E-value=1e-17  Score=133.01  Aligned_cols=102  Identities=15%  Similarity=0.194  Sum_probs=87.8

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|+||.++...+                        .....++++|||++|+||+ |+||+++|
T Consensus        28 ~~G~~gILp~H~p~it~L~pG~v~i~~~------------------------~~~~~~~v~gGf~eV~~~~-v~Ila~~a   82 (135)
T PRK13448         28 VEGDFGVLAGHAPVVAVIRPGILTVTAG------------------------GNQQKIVVLGGLAEVSEKG-LTVLADVA   82 (135)
T ss_pred             CccCeEEcCCCcceEeEeccEEEEEEEC------------------------CcEEEEEEeccEEEEECCE-EEEEEeee
Confidence            4789999999999999999999887421                        2233589999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhh
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAA  218 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~  218 (219)
                      ++.+|||.+++++++++|+++|.+. .+....+|...|.+++.+.+++
T Consensus        83 ~~~~dID~~~a~~~~~~Ae~~l~~~-~~~~l~ra~~rl~~~~~~~~~~  129 (135)
T PRK13448         83 TSVADLDLAQFAATIAEMEAQLAGK-VGDELDRAIERLDHFKSIQHQL  129 (135)
T ss_pred             EEcccCCHHHHHHHHHHHHHHHhhC-ChHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999774 4466777777799999888775

>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated

Probab=99.69  E-value=1.5e-17  Score=131.95  Aligned_cols=99  Identities=25%  Similarity=0.313  Sum_probs=87.6

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|++|.++....                       ......+|++|||++|++|+ |+||+++|
T Consensus        28 ~~G~~gILp~H~p~it~L~~G~l~i~~~-----------------------~~~~~~~~v~gG~~~v~~n~-v~Ila~~a   83 (135)
T PRK00571         28 TEGELGILPGHAPLLTALKPGVVRIKKD-----------------------DGEEEVIAVSGGFLEVQPDK-VTVLADSA   83 (135)
T ss_pred             CccCeeecCCCcceEEEeeceEEEEEEC-----------------------CCcEEEEEEccEEEEEECCE-EEEEEeeE
Confidence            4789999999999999999999887532                       12334689999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA  213 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~  213 (219)
                      ++.+|||.+++++++++|++.|.+..++.++.++++.|....+
T Consensus        84 ~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~  126 (135)
T PRK00571         84 ERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIA  126 (135)
T ss_pred             EEhhhCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888888999999998887655

>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.69  E-value=1.9e-17  Score=131.52  Aligned_cols=98  Identities=21%  Similarity=0.262  Sum_probs=85.7

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|+||.++...+                        .....++++|||++|++|+ |+||++.|
T Consensus        29 ~~G~~gILp~H~p~it~L~~G~l~i~~~------------------------~~~~~~~v~gG~~~v~~~~-v~Il~~~a   83 (136)
T PRK13446         29 VLGEFGVLPGHAPFLTALKIGELTYKKG------------------------GKTHYVAVNGGFAEVSNNK-VTVLAETA   83 (136)
T ss_pred             CccCeEEcCCCcceEEEeeccEEEEEeC------------------------CcEEEEEEcCEEEEEECCE-EEEEeeeE
Confidence            4789999999999999999998876421                        2334589999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA  213 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~  213 (219)
                      ++.++||.+++++++++|++.|.+..++.++.+++..|....+
T Consensus        84 ~~~~~iD~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~a~~  126 (136)
T PRK13446         84 ERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALERALI  126 (136)
T ss_pred             EEhhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888888889999887776554

>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria)

Probab=99.69  E-value=2.7e-17  Score=129.64  Aligned_cols=104  Identities=27%  Similarity=0.283  Sum_probs=92.0

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|+||.++....                       ......++++|||++|++|+ |+|++++|
T Consensus        26 ~~G~~giL~~H~p~i~~L~~G~v~i~~~-----------------------~~~~~~~~v~gG~~~v~~~~-v~Il~~~a   81 (130)
T TIGR01216        26 SEGELGILPGHAPLITALKPGVVRIRKL-----------------------GDDWEHIAVSGGFAEVQPDK-VTILADGA   81 (130)
T ss_pred             CcCCeeecCCChhhEeEecceEEEEEEC-----------------------CCCEEEEEEcCcEEEEECCE-EEEEEeEE
Confidence            3789999999999999999999887532                       12345689999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhh
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAA  218 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~  218 (219)
                      ++.++||.+++++++++|+++|++..++.++.+|++.|....+..++.
T Consensus        82 ~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~rl~~~  129 (130)
T TIGR01216        82 VFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEAL  129 (130)
T ss_pred             EEcccCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999998888999999999999998865554

This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.

>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.68  E-value=2.3e-17  Score=130.97  Aligned_cols=102  Identities=22%  Similarity=0.258  Sum_probs=84.7

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|.++.|++|.++....                        .....++++|||++|+||+ |+||+++|
T Consensus        29 ~~Ge~GILp~H~Plit~L~pG~v~i~~~------------------------~~~~~~avsgGf~eV~~n~-V~Ilad~a   83 (136)
T PRK13443         29 ADGDMTAMEGHAPTITTLRPGILRAHGP------------------------SGTQEYAVTGGFAEINATS-ISVLAEKA   83 (136)
T ss_pred             CccCeeEcCCCcceEEEecceEEEEEEC------------------------CCeEEEEEcceEEEEECCE-EEEEeCee
Confidence            4789999999999999999999887432                        1122379999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHhh
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSE---TAKAEAQIAVEVAEALVAA  217 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~---~~~~~a~~~l~~~~~l~~~  217 (219)
                      ++.+|||.+++++++++|+++|++..++   .++.++++.+...+++.+.
T Consensus        84 ~~~edID~~~a~~a~~~Ae~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (136)
T PRK13443         84 IPVEELTGAVLDEFIAEARELASVALPENEPGDVDDAAKTLADMLALGAH  133 (136)
T ss_pred             EEhhhCCHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999875433   2667777777777777654

>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.68  E-value=2.5e-17  Score=130.26  Aligned_cols=98  Identities=22%  Similarity=0.307  Sum_probs=85.0

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|+||.++....                       ......++++|||++|++|+ |+||+++|
T Consensus        28 ~~G~~GILp~H~p~it~L~~G~l~i~~~-----------------------~~~~~~~~v~gGf~~v~~~~-v~Il~~~a   83 (132)
T PRK13450         28 LDGDIAILPNHVPLITYLKPTITKIIDE-----------------------NGEKKKIFTSSGVLKVENNE-VYILCDAS   83 (132)
T ss_pred             CccCceecCCCcccEeEEccEEEEEEEC-----------------------CCcEEEEEEcCeEEEEECCE-EEEEehhh
Confidence            4689999999999999999998876422                       12345589999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA  213 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~  213 (219)
                      ++.+|||.+++++++++|++.| +..++.++.+|+..|....+
T Consensus        84 ~~~~~ID~~~a~~~~~~A~~~l-~~~~~~~~~~a~~~l~ra~~  125 (132)
T PRK13450         84 EWPEEIDIKRAENAKKRAEERL-RKKDEIDVKRAELALFRAIA  125 (132)
T ss_pred             cccccCCHHHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHH
Confidence            9999999999999999999999 56688889999988877665

>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.59  E-value=7.9e-16  Score=120.94  Aligned_cols=79  Identities=18%  Similarity=0.247  Sum_probs=70.5

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|.++.|+||.++...+                        .....++++|||++|++|+ |+||++.|
T Consensus        30 ~~G~~gILp~H~p~it~L~~G~l~i~~~------------------------~~~~~~~v~gG~~~v~~~~-v~Il~~~a   84 (127)
T PRK13444         30 SEGFFGILPNHAPLVATLGIGLLEIRKG------------------------EKLKRISVEGGFCEVKDNQ-ISILTDHG   84 (127)
T ss_pred             CccCeEecCCCcCeEeEeccEEEEEEEC------------------------CeEEEEEEeceEEEEECCE-EEEEEeEE
Confidence            4789999999999999999998887422                        2334589999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhc
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSS  194 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~  194 (219)
                      ++.+|||.+++++++++|+++|++
T Consensus        85 ~~~~diD~~~a~~~~~~Ae~~l~~  108 (127)
T PRK13444         85 ALKEDIDHEHEKKLLAEAEKLPPS  108 (127)
T ss_pred             EehhhCCHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999976

>PRK01474 atpC F0F1 ATP synthase subunit epsilon; Validated

Probab=99.56  E-value=8.7e-16  Score=118.24  Aligned_cols=82  Identities=18%  Similarity=0.227  Sum_probs=69.9

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|+++.++.....        .             ......++++|||++|.+|+ |+||+++|
T Consensus        29 ~~G~~gILp~H~p~it~L~~G~l~i~~~~--------~-------------~~~~~~~~v~gGf~~v~~n~-v~Ila~~a   86 (112)
T PRK01474         29 EEGMFGVLPSHVPMIVSLKAGLVQVYIDD--------M-------------HKSENTYLISGGVTEVTGNY-INIATETA   86 (112)
T ss_pred             CccCceecCCCcceEEEecceEEEEEECC--------C-------------CCcEEEEEEcceEEEEECCE-EEEEeCee
Confidence            46899999999999999999998874210        0             01234578999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhc
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSS  194 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~  194 (219)
                      ++.++||.++|++++++|++.|.+
T Consensus        87 ~~~~~ID~~~a~~~~~~A~~~l~~  110 (112)
T PRK01474         87 INVTNLSEAEIATKLLDLQKTLSD  110 (112)
T ss_pred             EEhhhCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999865

>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.55  E-value=8.2e-16  Score=116.34  Aligned_cols=76  Identities=14%  Similarity=0.191  Sum_probs=66.7

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|++|.++...+                        .....++++|||++|++|+ |+||+++|
T Consensus        25 ~~G~~GILp~H~p~it~L~~G~l~i~~~------------------------~~~~~~~v~gGf~~v~~~~-v~Il~~~a   79 (101)
T PRK13451         25 VEGEMGILPRRAPIIAKLSVCDVKIKSG------------------------DDEYEYKVADGFLHCDGKN-VIIITEEA   79 (101)
T ss_pred             CccCeEEcCCCcceEEEecceEEEEEEC------------------------CcEEEEEEeccEEEEECCE-EEEEEeEe
Confidence            4689999999999999999998887422                        2334589999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH
Q psy9917         171 HPVDSLDASAARDVLSKAQSE  191 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~  191 (219)
                      ++.+|||.++|++++++|+..
T Consensus        80 ~~~e~ID~~~a~~a~~~Ae~~  100 (101)
T PRK13451         80 GREEEISPHRYLGARERVERV  100 (101)
T ss_pred             EehhhCCHHHHHHHHHHhhcc
Confidence            999999999999999999853

>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.25  E-value=4.2e-12  Score=100.91  Aligned_cols=71  Identities=21%  Similarity=0.118  Sum_probs=58.2

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEc-CCCcEEEEecc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVN-DDSSVQIIAEE  169 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~-~~~~vtvla~~  169 (219)
                      .+|+++||++|+|+++.|+++.++....                       ......++++|||++|+ +| .|+||+++
T Consensus        26 ~~G~~GILp~HaPlit~L~~G~l~i~~~-----------------------~g~~~~~aVsGGfleV~~~n-~V~Ilad~   81 (136)
T PRK13447         26 ASGGFGILPGHADFLTVLRASVVRWRRA-----------------------DGATHYCAVRGGVLRVTGGA-RVEIACRE   81 (136)
T ss_pred             CcCceEEcCCCcceEeEecceEEEEEEC-----------------------CCcEEEEEEeCcEEEEecCC-EEEEEece
Confidence            3579999999999999999998887432                       12345589999999999 77 59999999


Q ss_pred             cccCCCCCHHHHHHHH
Q psy9917         170 AHPVDSLDASAARDVL  185 (219)
Q Consensus       170 A~~~~~id~~~a~~~~  185 (219)
                      |++.+|||..+++-..
T Consensus        82 ae~~edID~~~a~i~~   97 (136)
T PRK13447         82 AVLGEDLARLEAVVRA   97 (136)
T ss_pred             eEchhhcCHHHHHHHH
Confidence            9999999976655433

>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon

Probab=99.25  E-value=1.7e-12  Score=101.45  Aligned_cols=74  Identities=11%  Similarity=0.095  Sum_probs=58.7

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|+|+.++....                       ......++++|||++|.+|. |+||+++|
T Consensus        25 ~~G~~GILp~H~p~it~L~~G~l~i~~~-----------------------~~~~~~~av~gGf~~v~~n~-v~Il~~~a   80 (122)
T TIGR03166        25 ESGSFGLLPGHVDCVAALVPGILIYETA-----------------------DGGEHYVAVDQGILVKRGAD-VEVSVRNA   80 (122)
T ss_pred             CcCCeEEcCCCcCeEeEeccEEEEEEEC-----------------------CCcEEEEEEeeeEEEEECCE-EEEEecee
Confidence            3689999999999999999999887432                       12344578999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q psy9917         171 HPVDSLDASAARDVLSKAQS  190 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~  190 (219)
                      ++.+|||.  +.++++.+..
T Consensus        81 e~~edId~--l~~~i~~~~~   98 (122)
T TIGR03166        81 VGGTELEE--LEEAVRQEFL   98 (122)
T ss_pred             EcccCHHH--HHHHHHHHHH
Confidence            99999955  3335554443

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.

>PRK06228 F0F1 ATP synthase subunit epsilon; Validated

Probab=99.23  E-value=1.9e-12  Score=102.29  Aligned_cols=74  Identities=12%  Similarity=0.110  Sum_probs=58.9

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|++|.++....                       ......++++|||++|.+|+ |+||++.|
T Consensus        28 ~~G~~GILp~H~p~it~L~~G~l~i~~~-----------------------~~~~~~~av~gGf~ev~~n~-V~Ilad~a   83 (131)
T PRK06228         28 REGSFGLLPHRLDCVAALVPGILVYETE-----------------------AEGEVYVAVDEGILVKTGPD-VLVSVRNA   83 (131)
T ss_pred             CccCeEECCCCcceEeeecceEEEEEEC-----------------------CCcEEEEEEcceEEEEECCE-EEEEEcee
Confidence            3789999999999999999999887421                       12345689999999999995 99999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q psy9917         171 HPVDSLDASAARDVLSKAQS  190 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~  190 (219)
                      ++.+|||.  .+++++++.+
T Consensus        84 e~~edid~--~~~~l~~~~~  101 (131)
T PRK06228         84 IGGTDLGE--LREAVEQEFL  101 (131)
T ss_pred             EchhhHHH--HHHHHHHHHH
Confidence            99998865  4444555533

>PRK13449 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=98.79  E-value=3.3e-10  Score=83.66  Aligned_cols=60  Identities=22%  Similarity=0.229  Sum_probs=49.2

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|.++.|+++.++....+                      ..+...++++|||++|++|+ |+||+++|
T Consensus        28 ~~G~~gILp~H~p~it~L~~G~l~i~~~~----------------------~~~~~~~~v~gGf~~v~~n~-v~Il~~~a   84 (88)
T PRK13449         28 TEGDFGVLAGHAPFMTTLREGEVTVYSSD----------------------GAAPEVFHVQGGFAEVNEKG-LTILAEHA   84 (88)
T ss_pred             CccCeEEcCCCcceEEEeeceEEEEEECC----------------------CCeEEEEEEcceEEEEECCE-EEEEccee
Confidence            47899999999999999999998875311                      12234589999999999995 99999999


Q ss_pred             ccC
Q psy9917         171 HPV  173 (219)
Q Consensus       171 ~~~  173 (219)
                      +.+
T Consensus        85 e~~   87 (88)
T PRK13449         85 VEA   87 (88)
T ss_pred             EEc
Confidence            754

>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=98.78  E-value=5.5e-10  Score=82.62  Aligned_cols=59  Identities=19%  Similarity=0.315  Sum_probs=50.1

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|+++.++...+                       ..+...++++|||++|++|+ |+||+++|
T Consensus        30 ~~G~~gILp~H~p~it~L~~G~l~i~~~-----------------------~~~~~~~~v~gG~~~v~~n~-v~Il~~~a   85 (89)
T PRK13442         30 TEGDIGILPGHEPLLGVLESGTVTVVTP-----------------------GGERISAAVDGGFISFDSNK-LTVLAERA   85 (89)
T ss_pred             CcCCcEecCCCcCeEEEEcceEEEEEEC-----------------------CCcEEEEEEccEEEEEECCE-EEEEEeEE
Confidence            4689999999999999999999887532                       12445689999999999995 99999999


Q ss_pred             ccC
Q psy9917         171 HPV  173 (219)
Q Consensus       171 ~~~  173 (219)
                      +++
T Consensus        86 e~~   88 (89)
T PRK13442         86 ELV   88 (89)
T ss_pred             EEC
Confidence            875

>PF02823 ATP-synt_DE_N: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; InterPro: IPR020546 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.46  E-value=6.4e-09  Score=75.12  Aligned_cols=56  Identities=30%  Similarity=0.367  Sum_probs=47.4

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|.+..|+++.++....                       ..+.+.++++|||++|.+| .|+|++++|
T Consensus        25 ~~G~~gIl~~H~p~i~~l~~G~~~i~~~-----------------------~~~~~~~~v~~G~~~v~~n-~v~Il~~~A   80 (80)
T PF02823_consen   25 TDGEFGILPNHAPFITALKPGELRIKDA-----------------------DGEEKKFAVSGGFLEVKDN-EVTILADEA   80 (80)
T ss_dssp             SSSEEEEETTS-SEEEEEESEEEEEEES-----------------------SSEEEEEEESSEEEEEETS-EEEEEESSE
T ss_pred             CCcChhhccCCchhheeccceEEEEEEc-----------------------CCCEEEEEEcCEEEEEECC-EEEEEEccC
Confidence            4789999999999999999998887532                       2456788999999999998 599999987

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 2WSS_H 1E79_H 2JDI_H 2W6I_H 2W6H_H 2W6J_H 2CK3_H 2V7Q_H 1H8E_H 2XND_H ....

>PF00401 ATP-synt_DE: ATP synthase, Delta/Epsilon chain, long alpha-helix domain; InterPro: IPR020547 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.50  E-value=0.00024  Score=46.49  Aligned_cols=46  Identities=26%  Similarity=0.258  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhc
Q psy9917         106 DSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVS  151 (219)
Q Consensus       106 ~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~Vs  151 (219)
                      ++||+.+++..+++|++.|.+..++.++.+++.+|+++..++.++.
T Consensus         1 ~dID~~rA~~a~~~Ae~~l~~~~~~~e~~~A~~~L~rA~aRl~~~~   46 (48)
T PF00401_consen    1 EDIDEERAEEAKERAEERLEKAKSDKEYARAQAALKRAIARLQAAK   46 (48)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCSSCSHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcCCHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999988999999999999999988753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OAA_P 1BSN_A 1FS0_E 1AQT_A 1BSH_A 2RQ7_A 2RQ6_A 2E5Y_A 2QE7_H 2E5T_A ....

>PF00401 ATP-synt_DE: ATP synthase, Delta/Epsilon chain, long alpha-helix domain; InterPro: IPR020547 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.33  E-value=0.00035  Score=45.70  Aligned_cols=39  Identities=28%  Similarity=0.354  Sum_probs=35.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy9917         174 DSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAE  212 (219)
Q Consensus       174 ~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~  212 (219)
                      +|||+++|++++++|++.|.++.++.++.+|++.|..-.
T Consensus         1 ~dID~~rA~~a~~~Ae~~l~~~~~~~e~~~A~~~L~rA~   39 (48)
T PF00401_consen    1 EDIDEERAEEAKERAEERLEKAKSDKEYARAQAALKRAI   39 (48)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCSSCSHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH
Confidence            689999999999999999999888889999999887644

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OAA_P 1BSN_A 1FS0_E 1AQT_A 1BSH_A 2RQ7_A 2RQ6_A 2E5Y_A 2QE7_H 2E5T_A ....

>PRK10579 hypothetical protein; Provisional

Probab=85.26  E-value=6.6  Score=29.30  Aligned_cols=68  Identities=16%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             eeeecCceeEEEEecCcee---eee-cCC------CccceecccCeEEEEEEcCC-eEEEEEEecCeEEEecCceEEEee
Q psy9917          31 VFYTNQNVKQVDVPSFSGA---FGI-LPN------HVPTLAILKPGVITVYETEG-VSQKIFVSSGTITVNDDSSVQIIA   99 (219)
Q Consensus        31 ~~~~~~~v~~V~~~t~~G~---~gI-L~~------H~p~it~L~~G~l~i~~~~g-~~~~~~vsgG~~~V~~~g~v~Ila   99 (219)
                      +.|+| +|.+..+-..+|.   +|| +||      |+|-+..+..|.++++.++. +|+ -+-.|.-..|-.|..+.|-+
T Consensus         6 vYFdG-kv~S~~~~~~dG~~kTlGVm~pGey~F~T~~~E~MeivsG~l~V~Lpg~~ew~-~~~aG~sF~VpanssF~l~v   83 (94)
T PRK10579          6 EYFSG-KVKSIGFDSSSTGRASVGVMAEGEYTFSTAEPEEMTVISGALNVLLPGATDWQ-VYEAGEVFNVPGHSEFHLQV   83 (94)
T ss_pred             eEECC-eEEEEEEEcCCCCeeEEEEEeeeEEEEcCCCcEEEEEEeeEEEEECCCCcccE-EeCCCCEEEECCCCeEEEEE
Confidence            57998 9999999999965   674 444      78888889999999998653 354 45556666776665666654


Q ss_pred             C
Q psy9917         100 E  100 (219)
Q Consensus       100 ~  100 (219)
                      .
T Consensus        84 ~   84 (94)
T PRK10579         84 A   84 (94)
T ss_pred             C
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
2xnd_H	131	Crystal Structure Of Bovine F1-C8 Sub-Complex Of At		6e-27
2xnd_H	131	Crystal Structure Of Bovine F1-C8 Sub-Complex Of At		6e-06
2w6i_H	168	Low Resolution Structures Of Bovine Mitochondrial F		3e-26
2w6i_H	168	Low Resolution Structures Of Bovine Mitochondrial F		5e-06
1e79_H	146	Bovine F1-Atpase Inhibited By Dccd (Dicyclohexylcar		3e-26
1e79_H	146	Bovine F1-Atpase Inhibited By Dccd (Dicyclohexylcar		7e-06
2xok_H	160	Refined Structure Of Yeast F1c10 Atpase Complex To		4e-12
2hld_H	138	Crystal Structure Of Yeast Mitochondrial F1-Atpase		5e-12
3oe7_H	137	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		5e-12
4b2q_H	132	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		5e-12
1bsh_A	138	Solution Structure Of The Epsilon Subunit Of The F1		3e-05
1aqt_A	138	Molecular Architecture Of The Rotary Motor In Atp S		3e-05
2e5y_A	133	Epsilon Subunit And Atp Complex Of F1f0-Atp Synthas		1e-04

>pdb|2XND|H Chain H, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 131

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/95 (56%), Positives = 73/95 (76%)
Query: 20  QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQK 79
           QM FT AS  +VF+ + NV+QVDVP+ +GAFGIL  HVPTL +L+PG++ V+  +G + K
Sbjct: 1   QMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSK 60
Query: 80  IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 114
            FVSSG++TVN DSSVQ++AEEA  +D LD  AA+
Sbjct: 61  YFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAK 95

>pdb|2XND|H Chain H, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 131

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 182
           K FVSSG++TVN DSSVQ++AEEA  +D LD  AA+
Sbjct: 60  KYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAK 95

>pdb|2W6I|H Chain H, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 4b. Length = 168

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 72/94 (76%)
Query: 21  MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
           M FT AS  +VF+ + NV+QVDVP+ +GAFGIL  HVPTL +L+PG++ V+  +G + K 
Sbjct: 38  MSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKY 97
Query: 81  FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 114
           FVSSG++TVN DSSVQ++AEEA  +D LD  AA+
Sbjct: 98  FVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAK 131

>pdb|2W6I|H Chain H, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 4b. Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 182
           K FVSSG++TVN DSSVQ++AEEA  +D LD  AA+
Sbjct: 96  KYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAK 131

>pdb|1E79|H Chain H, Bovine F1-Atpase Inhibited By Dccd (Dicyclohexylcarbodiimide) Length = 146

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 72/94 (76%)
Query: 21  MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
           M FT AS  +VF+ + NV+QVDVP+ +GAFGIL  HVPTL +L+PG++ V+  +G + K 
Sbjct: 16  MSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKY 75
Query: 81  FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 114
           FVSSG++TVN DSSVQ++AEEA  +D LD  AA+
Sbjct: 76  FVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAK 109

>pdb|1E79|H Chain H, Bovine F1-Atpase Inhibited By Dccd (Dicyclohexylcarbodiimide) Length = 146

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 182
           K FVSSG++TVN DSSVQ++AEEA  +D LD  AA+
Sbjct: 74  KYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAK 109

>pdb|2XOK|H Chain H, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 160

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 21  MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
           +    A  ++  Y+   V QV++P+ SG  G+L NHVPT+  L PGV+ V E    S+K 
Sbjct: 32  LKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSN-SKKF 90
Query: 81  FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDV 116
           F+S G  TV  DS + + A EA P++S      +++
Sbjct: 91  FISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNL 126

>pdb|2HLD|H Chain H, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 138

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 21  MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
           +    A  ++  Y+   V QV++P+ SG  G+L NHVPT+  L PGV+ V E    S+K 
Sbjct: 10  LKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSN-SKKF 68
Query: 81  FVSSGTITVNDDSSVQIIAEEAHPVDSL 108
           F+S G  TV  DS + + A EA P++S 
Sbjct: 69  FISGGFATVQPDSQLCVTAIEAFPLESF 96

>pdb|3OE7|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Gamma-I270t Length = 137

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 21  MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
           +    A  ++  Y+   V QV++P+ SG  G+L NHVPT+  L PGV+ V E    S+K 
Sbjct: 9   LKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSN-SKKF 67
Query: 81  FVSSGTITVNDDSSVQIIAEEAHPVDSL 108
           F+S G  TV  DS + + A EA P++S 
Sbjct: 68  FISGGFATVQPDSQLCVTAIEAFPLESF 95

>pdb|4B2Q|H Chain H, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 132

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 21  MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
           +    A  ++  Y+   V QV++P+ SG  G+L NHVPT+  L PGV+ V E    S+K 
Sbjct: 4   LKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSN-SKKF 62
Query: 81  FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDV 116
           F+S G  TV  DS + + A EA P++S      +++
Sbjct: 63  FISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNL 98

>pdb|1BSH|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1- Atpsynthase From Escherichia Coli And Orientation Of The Subunit Relative To The Beta Subunits Of The Complex Length = 138

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 38  VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
           V+++ V    G  GI P H P L  +KPG+I + +  G  + I++S G + V    +V +
Sbjct: 20  VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-PGNVTV 78
Query: 98  IAEEAHPVDSLDASAARD 115
           +A+ A     LD + A +
Sbjct: 79  LADTAIRGQDLDEARAME 96

>pdb|1AQT|A Chain A, Epsilon Subunit Of F1f0-Atp Synthase From Escherichia Coli Length = 138

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 38  VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
           V+++ V    G  GI P H P L  +KPG+I + +  G  + I++S G + V    +V +
Sbjct: 20  VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-PGNVTV 78
Query: 98  IAEEAHPVDSLDASAARD 115
           +A+ A     LD + A +
Sbjct: 79  LADTAIRGQDLDEARAME 96

>pdb|2E5Y|A Chain A, Epsilon Subunit And Atp Complex Of F1f0-Atp Synthase From The Thermophilic Bacillus Ps3 Length = 133

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 37  NVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ 96
           +V+ V V + SG  GILP H+P +A L+     + +  G +Q I VS G + V  D  V 
Sbjct: 19  DVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKG-GKTQYIAVSGGFLEVRPD-KVT 76
Query: 97  II---AEEAHPVDSLDASAARD 115
           I+   AE A  +D L A AA++
Sbjct: 77  ILAQAAERAEDIDVLRAKAAKE 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
2xok_H	160	ATP synthase; hydrolase, ATP-binding, F(O), F(1),	8e-37
2xok_H	160	ATP synthase; hydrolase, ATP-binding, F(O), F(1),	2e-14
2w6j_H	168	F1-ATPase delta subunit; ATP phosphorylase (H+ tra	1e-35
2w6j_H	168	F1-ATPase delta subunit; ATP phosphorylase (H+ tra	4e-14
2ck3_H	146	ATP synthase subunit delta\, mitochondrial; hydrol	2e-34
2ck3_H	146	ATP synthase subunit delta\, mitochondrial; hydrol	1e-13
3oee_H	138	ATP synthase subunit delta; ATP phosphatase, F1F0	5e-34
3oee_H	138	ATP synthase subunit delta; ATP phosphatase, F1F0	4e-14
1aqt_A	138	ATP synthase; hydrolase, ATPase, epsilon subunit;	2e-33
1aqt_A	138	ATP synthase; hydrolase, ATPase, epsilon subunit;	1e-12
2e5y_A	133	ATP synthase epsilon chain; F1FO ATP synthase, F1-	3e-29
2e5y_A	133	ATP synthase epsilon chain; F1FO ATP synthase, F1-	2e-12
2rq6_A	138	ATP synthase epsilon chain; F1FO ATP synthase, F1-	6e-22
2rq6_A	138	ATP synthase epsilon chain; F1FO ATP synthase, F1-	3e-07
2qe7_H	135	ATP synthase subunit epsilon; blockage of ATP hydr	7e-21
2qe7_H	135	ATP synthase subunit epsilon; blockage of ATP hydr	1e-06

>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 160

 Score =  125 bits (316), Expect = 8e-37
 Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 8/153 (5%)

Query: 1   MAARLVTSATRLARRGYAD------QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILP 54
           +      S   +A+R YA+       +    A  ++  Y+   V QV++P+ SG  G+L 
Sbjct: 6   IGKSASRSLNFVAKRSYAEAAAASSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLA 65

Query: 55  NHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 114
           NHVPT+  L PGV+ V E    S+K F+S G  TV  DS + + A EA P++S      +
Sbjct: 66  NHVPTVEQLLPGVVEVMEGSN-SKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIK 124

Query: 115 DVLSKAQSELSSASSETAKAEAQIAVEVAEALK 147
           ++L++A+  +SS+      AEA I VEV E L+
Sbjct: 125 NLLAEAKKNVSSS-DAREAAEAAIQVEVLENLQ 156

>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 160

 Score = 67.1 bits (164), Expect = 2e-14
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
           K F+S G  TV  DS + + A EA P++S      +++L++A+  +SS+      AEA I
Sbjct: 89  KFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSS-DAREAAEAAI 147

Query: 207 AVEVAEALVAA 217
            VEV E L + 
Sbjct: 148 QVEVLENLQSV 158

>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H Length = 168

 Score =  123 bits (309), Expect = 1e-35
 Identities = 75/158 (47%), Positives = 98/158 (62%), Gaps = 12/158 (7%)

Query: 1   MAARLVTSATRLARRGYA------------DQMDFTLASGNKVFYTNQNVKQVDVPSFSG 48
           +  R          R YA             QM FT AS  +VF+ + NV+QVDVP+ +G
Sbjct: 6   LLRRPGLGRLVRQVRLYAEAAAAQAPAAGPGQMSFTFASPTQVFFNSANVRQVDVPTQTG 65

Query: 49  AFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSL 108
           AFGIL  HVPTL +L+PG++ V+  +G + K FVSSG++TVN DSSVQ++AEEA  +D L
Sbjct: 66  AFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDML 125

Query: 109 DASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 146
           D  AA+  L KAQSEL  A+ E  +AE QI +E  EAL
Sbjct: 126 DLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEAL 163

>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H Length = 168

 Score = 66.9 bits (163), Expect = 4e-14
 Identities = 42/71 (59%), Positives = 51/71 (71%)

Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
           K FVSSG++TVN DSSVQ++AEEA  +D LD  AA+  L KAQSEL  A+ E  +AE QI
Sbjct: 96  KYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQI 155

Query: 207 AVEVAEALVAA 217
            +E  EALV A
Sbjct: 156 RIEANEALVKA 166

>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H* Length = 146

 Score =  119 bits (299), Expect = 2e-34
 Identities = 73/139 (52%), Positives = 96/139 (69%)

Query: 8   SATRLARRGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGV 67
           +A   A      QM FT AS  +VF+ + NV+QVDVP+ +GAFGIL  HVPTL +L+PG+
Sbjct: 3   AAAAQAPAAGPGQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGL 62

Query: 68  ITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSA 127
           + V+  +G + K FVSSG++TVN DSSVQ++AEEA  +D LD  AA+  L KAQSEL  A
Sbjct: 63  VVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGA 122

Query: 128 SSETAKAEAQIAVEVAEAL 146
           + E  +AE QI +E  EAL
Sbjct: 123 ADEATRAEIQIRIEANEAL 141

>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H* Length = 146

 Score = 64.5 bits (157), Expect = 1e-13
 Identities = 42/71 (59%), Positives = 51/71 (71%)

Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
           K FVSSG++TVN DSSVQ++AEEA  +D LD  AA+  L KAQSEL  A+ E  +AE QI
Sbjct: 74  KYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQI 133

Query: 207 AVEVAEALVAA 217
            +E  EALV A
Sbjct: 134 RIEANEALVKA 144

>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3zry_H* 3oe7_H* Length = 138

 Score =  117 bits (295), Expect = 5e-34
 Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)

Query: 18  ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVS 77
           +  +    A  ++  Y+   V QV++P+ SG  G+L NHVPT+  L PGV+ V E    S
Sbjct: 7   SSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVME-GSNS 65

Query: 78  QKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQ 137
           +K F+S G  TV  DS + + A EA P++S      +++L++A+  +SS+      AEA 
Sbjct: 66  KKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSS-DAREAAEAA 124

Query: 138 IAVEVAEALK 147
           I VEV E L+
Sbjct: 125 IQVEVLENLQ 134

>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3zry_H* 3oe7_H* Length = 138

 Score = 65.9 bits (161), Expect = 4e-14
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
           K F+S G  TV  DS + + A EA P++S      +++L++A+  +SS+      AEA I
Sbjct: 67  KFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSS-DAREAAEAAI 125

Query: 207 AVEVAEALVAA 217
            VEV E L + 
Sbjct: 126 QVEVLENLQSV 136

>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H* Length = 138

 Score =  115 bits (291), Expect = 2e-33
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 2/128 (1%)

Query: 18  ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVS 77
                  + S  +  + +  V+++ V    G  GI P H P L  +KPG+I + +  G  
Sbjct: 1   GSTYHLDVVSAEQQMF-SGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHE 59

Query: 78  QKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQ 137
           + I++S G + V    +V ++A+ A     LD + A +   KA+  +SS+  +   A+A 
Sbjct: 60  EFIYLSGGILEVQPG-NVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQAS 118

Query: 138 IAVEVAEA 145
             +  A A
Sbjct: 119 AELAKAIA 126

>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H* Length = 138

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
            I++S G + V   + V ++A+ A     LD + A +   KA+  +SS+  +   A+A  
Sbjct: 61  FIYLSGGILEVQPGN-VTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASA 119

Query: 207 AVEVAEALVAAA 218
            +  A A +   
Sbjct: 120 ELAKAIAQLRVI 131

>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A Length = 133

 Score =  105 bits (263), Expect = 3e-29
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 3/126 (2%)

Query: 20  QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQK 79
            +  ++ + +   Y   +V+ V V + SG  GILP H+P +A L+     + +  G +Q 
Sbjct: 3   TIHVSVVTPDGPVY-EDDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKK-GGKTQY 60

Query: 80  IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIA 139
           I VS G + V  D  V I+A+ A   + +D   A+    +A+  L S   +     A++A
Sbjct: 61  IAVSGGFLEVRPD-KVTILAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELA 119

Query: 140 VEVAEA 145
           ++ A  
Sbjct: 120 LKRAMN 125

>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A Length = 133

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 144 EALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAE 203
           +   I VS G + V  D  V I+A+ A   + +D   A+    +A+  L S   +     
Sbjct: 57  KTQYIAVSGGFLEVRPDK-VTILAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKR 115

Query: 204 AQIAVEVAEALVAAA 218
           A++A++ A   ++ A
Sbjct: 116 AELALKRAMNRLSVA 130

>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A Length = 138

 Score = 86.6 bits (215), Expect = 6e-22
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 21  MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
           M   + + +K  + +   ++V +PS +G  GIL NH P L  L+ GV+ V + +     I
Sbjct: 3   MTVRVIAPDKTVW-DAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQ-DREWVAI 60

Query: 81  FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASS---ETAKAEAQ 137
            +  G   V ++  V I+   A   D++D   A+   + AQ+ L+ A     + AK +A 
Sbjct: 61  ALMGGFAEVENN-EVTILVNGAERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQAT 119

Query: 138 IAVEVAEA 145
            A   A A
Sbjct: 120 QAFRRARA 127

>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A Length = 138

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 144 EALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASS---ETA 200
           E + I +  G   V ++  V I+   A   D++D   A+   + AQ+ L+ A     + A
Sbjct: 56  EWVAIALMGGFAEVENNE-VTILVNGAERGDTIDLEKAKAEFAAAQAALAQAEQGESKQA 114

Query: 201 KAEAQIAVEVAEALVAAA 218
           K +A  A   A A + AA
Sbjct: 115 KIQATQAFRRARARLQAA 132

>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 135

 Score = 83.5 bits (207), Expect = 7e-21
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 21  MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
           +   + +  +  +       V      G  G++  H+P +  LK   + + + +     I
Sbjct: 4   VQVDIVTPERKVF-QGEADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQGDK-ETLI 61

Query: 81  FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSAS-SETAKAEAQIA 139
            VS G + V  D  V I+A+ A   + +D   A+   ++ ++ L     ++      + A
Sbjct: 62  AVSGGFLEVRPD-KVNILADTAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKRA 120

Query: 140 VEVAEA 145
           +E AE 
Sbjct: 121 LERAEV 126

>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 135

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSAS-SETAKAEAQ 205
            I VS G + V  D  V I+A+ A   + +D   A+   ++ ++ L     ++      +
Sbjct: 60  LIAVSGGFLEVRPDK-VNILADTAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHK 118

Query: 206 IAVEVAEALVAAAS 219
            A+E AE  +  A+
Sbjct: 119 RALERAEVRLQVAN 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
1aqt_A	138	ATP synthase; hydrolase, ATPase, epsilon subunit;	100.0
2e5y_A	133	ATP synthase epsilon chain; F1FO ATP synthase, F1-	100.0
2rq6_A	138	ATP synthase epsilon chain; F1FO ATP synthase, F1-	100.0
2xok_H	160	ATP synthase; hydrolase, ATP-binding, F(O), F(1),	100.0
2w6j_H	168	F1-ATPase delta subunit; ATP phosphorylase (H+ tra	100.0
2ck3_H	146	ATP synthase subunit delta\, mitochondrial; hydrol	100.0
2qe7_H	135	ATP synthase subunit epsilon; blockage of ATP hydr	99.98
3oee_H	138	ATP synthase subunit delta; ATP phosphatase, F1F0	99.98
2ck3_H	146	ATP synthase subunit delta\, mitochondrial; hydrol	99.82
2xok_H	160	ATP synthase; hydrolase, ATP-binding, F(O), F(1),	99.82
2w6j_H	168	F1-ATPase delta subunit; ATP phosphorylase (H+ tra	99.8
1aqt_A	138	ATP synthase; hydrolase, ATPase, epsilon subunit;	99.79
2rq6_A	138	ATP synthase epsilon chain; F1FO ATP synthase, F1-	99.76
2e5y_A	133	ATP synthase epsilon chain; F1FO ATP synthase, F1-	99.76
3oee_H	138	ATP synthase subunit delta; ATP phosphatase, F1F0	99.75
2qe7_H	135	ATP synthase subunit epsilon; blockage of ATP hydr	99.72
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	91.86
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	86.75

>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*

Probab=100.00  E-value=6.2e-35  Score=231.24  Aligned_cols=130  Identities=25%  Similarity=0.441  Sum_probs=125.2

Q ss_pred             cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917          19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII   98 (219)
Q Consensus        19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il   98 (219)
                      ++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+|+|+.|+++|||++|.+| .|+|+
T Consensus         2 ~tl~l~ivtP~~~~~~~-~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~g~~~~~~v~gGf~ev~~~-~vtIl   79 (138)
T 1aqt_A            2 STYHLDVVSAEQQMFSG-LVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPG-NVTVL   79 (138)
T ss_dssp             CCEEEEEEESSCEEEEE-EEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETTTEEEEEEESSEEEEEETT-EEEEE
T ss_pred             CEEEEEEEcCCceEEee-eEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCCcEEEEEEeCcEEEEECC-EEEEE
Confidence            46999999999999998 99999999999999999999999999999999999888899999999999999987 89999


Q ss_pred             eCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917          99 AEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV  150 (219)
Q Consensus        99 a~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V  150 (219)
                      ++.+.+.++||+.+++..+++|+++|++..++.++.+++.+|+++.+++.+.
T Consensus        80 a~~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~arl~~~  131 (138)
T 1aqt_A           80 ADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVI  131 (138)
T ss_dssp             ESSEEEGGGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeEEEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998764

>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A

Probab=100.00  E-value=5.1e-35  Score=230.41  Aligned_cols=130  Identities=26%  Similarity=0.388  Sum_probs=124.0

Q ss_pred             cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917          17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ   96 (219)
Q Consensus        17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~   96 (219)
                      |++ |+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+ .+|+|+.|+++|||++|.+| .|+
T Consensus         1 M~~-~~l~ivtP~~~~~~~-~v~~V~~p~~~G~~GILp~H~p~it~L~~G~v~i~-~~~~~~~~~v~gGf~ev~~~-~vt   76 (133)
T 2e5y_A            1 MKT-IHVSVVTPDGPVYED-DVEMVSVKAKSGELGILPGHIPLVAPLEISAARLK-KGGKTQYIAVSGGFLEVRPD-KVT   76 (133)
T ss_dssp             CCC-EEEEEEETTEEEEEE-EESEEEEEETTEEEEECTTCCCEEEEEEEEEEEEE-ETTEEEEEEEEEEEEEEETT-EEE
T ss_pred             CCc-eEEEEEcCCceEEec-eEEEEEEECCcCCeEecCCCcceEeEecceEEEEE-ECCeEEEEEEcCeEEEEECC-EEE
Confidence            554 999999999999998 99999999999999999999999999999999999 58899999999999999987 899


Q ss_pred             EeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917          97 IIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV  150 (219)
Q Consensus        97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V  150 (219)
                      |+++.+.+.++||..+++..+++|+++|++..++.++.+++.+|+++.+++...
T Consensus        77 Ila~~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~~rl~~~  130 (133)
T 2e5y_A           77 ILAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMNRLSVA  130 (133)
T ss_dssp             EEESSEEEGGGCCHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeEEEEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999888999999999999999998764

>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A

Probab=100.00  E-value=3e-34  Score=227.31  Aligned_cols=128  Identities=29%  Similarity=0.392  Sum_probs=121.9

Q ss_pred             cEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEeeC
Q psy9917          21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAE  100 (219)
Q Consensus        21 l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila~  100 (219)
                      |+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|.||+++|+. +|+|+.|+++|||++|.+| .|+|+++
T Consensus         3 l~l~ivtP~~~~~~~-~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~-~~~~~~~~v~gGf~ev~~~-~vtIla~   79 (138)
T 2rq6_A            3 MTVRVIAPDKTVWDA-PAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQ-DREWVAIALMGGFAEVENN-EVTILVN   79 (138)
T ss_dssp             EEEEEECSSSEEEEE-EESEEEECCTTSCEEEESSCCSEEEEECSEEEEEES-SSCEEEEEECSEEEEECSS-CEEEEES
T ss_pred             eEEEEEcCCceEEee-eEEEEEEECCcCCeEEcCCCcceEeEeccEEEEEEE-CCeEEEEEEcCcEEEEECC-EEEEEEe
Confidence            899999999999998 999999999999999999999999999999999986 6889999999999999987 8999999


Q ss_pred             cccCCCCCCHHHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHHHHhhhhhc
Q psy9917         101 EAHPVDSLDASAARDVLSKAQSELSSAS---SETAKAEAQIAVEVAEALKIFVS  151 (219)
Q Consensus       101 ~a~~~~~Id~~~~~~~~e~a~~~l~~~~---~~~~~~~~~~~l~~~~~~l~~Vs  151 (219)
                      .+.+.++||+.+++..+++|+++|++..   ++.++.+++.+|+++.+++.+..
T Consensus        80 ~A~~~~dID~~~a~~a~~~Ae~~l~~~~~~~~~~~~~~a~~aL~rA~arl~~~~  133 (138)
T 2rq6_A           80 GAERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRARARLQAAG  133 (138)
T ss_dssp             CEECSTTCCHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEhhhCCHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999876   77889999999999999988753

>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-34  Score=233.53  Aligned_cols=130  Identities=37%  Similarity=0.586  Sum_probs=114.2

Q ss_pred             cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917          19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII   98 (219)
Q Consensus        19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il   98 (219)
                      ++|+|+|+||++.+|++.+|++|++||.+|+|||||||+|+|+.|+||+++|+. +|+|+.|+++|||++|.+||.|+|+
T Consensus        30 ~~l~l~IVtPe~~~~~~~~v~~V~~p~~~Ge~GILp~H~Plit~L~~G~v~i~~-~g~~~~~aV~gGf~eV~~~n~VtIl  108 (160)
T 2xok_H           30 SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVME-GSNSKKFFISGGFATVQPDSQLCVT  108 (160)
T ss_dssp             ----CCCBCSSCBCCC--CCSEEEEECSSSEEEEESSCCCCEEEECSSCEEECS-SSCCEEECCCCEEEEECTTSCEEEE
T ss_pred             CeEEEEEEcCCeeEEcCCcEEEEEEECCccCeEecCCCccceeEecceEEEEEE-CCEEEEEEEcCeEEEEeCCCeEEEE
Confidence            579999999999999953799999999999999999999999999999999987 8889999999999999876689999


Q ss_pred             eCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917          99 AEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV  150 (219)
Q Consensus        99 a~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V  150 (219)
                      ++.+.+.++||..+++..+++|+++|++. ++.++.+++.+|++++..+.++
T Consensus       109 a~~A~~~~dID~~~A~~a~~~Ae~~l~~~-~~~d~~~A~~~L~~a~~l~~al  159 (160)
T 2xok_H          109 AIEAFPLESFSQENIKNLLAEAKKNVSSS-DAREAAEAAIQVEVLENLQSVL  159 (160)
T ss_dssp             ESCC-CCTTTC-CHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHHCC-
T ss_pred             eeeeEehhhCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999998 8899999999999999887654

>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H

Probab=100.00  E-value=2.4e-35  Score=240.41  Aligned_cols=132  Identities=54%  Similarity=0.783  Sum_probs=81.7

Q ss_pred             cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917          19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII   98 (219)
Q Consensus        19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il   98 (219)
                      ++|+|+|+||++.+|++.+|++|++||.+|+|||||||+|+|+.|+||+++|+..+|+|+.|+++|||++|.+||.|+||
T Consensus        36 ~~~~l~IVtPe~~~~~~~~V~~V~~p~~~Ge~GILp~H~Plit~L~~G~v~i~~~~g~~~~~~V~gGf~eV~~~n~VtIl  115 (168)
T 2w6j_H           36 GQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLL  115 (168)
T ss_dssp             ---CCCEECSSCEEEC-----CCBCCC-----------------CCSBCCBC----------CBCSBC---------CEE
T ss_pred             CeEEEEEEcCCeeEEcCCcEEEEEEeCCccCccccCCCcceEeEecceEEEEEECCCcEEEEEEeCCeEEEecCCeEEEE
Confidence            57999999999999995379999999999999999999999999999999999778889999999999999875589999


Q ss_pred             eCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917          99 AEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV  150 (219)
Q Consensus        99 a~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V  150 (219)
                      ++++.+.++||..+++..+++|+++|++..++.++.++++.+++++.++.++
T Consensus       116 a~~A~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~  167 (168)
T 2w6j_H          116 AEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKAL  167 (168)
T ss_dssp             BSSBCCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC-----
T ss_pred             ecccCccccCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999988764

>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*

Probab=100.00  E-value=4.7e-35  Score=233.90  Aligned_cols=133  Identities=53%  Similarity=0.778  Sum_probs=81.8

Q ss_pred             ccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEE
Q psy9917          18 ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI   97 (219)
Q Consensus        18 a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~I   97 (219)
                      +++|+|+|+||++.+|++.+|++|++||.+|+|||||||+|+|+.|+||+++|+..+|+|+.|+++|||++|.+||.|+|
T Consensus        13 ~~~l~l~IvtP~~~~~~~~~v~~V~~p~~~Ge~GILp~H~P~it~L~~G~v~i~~~~g~~~~~~v~gGf~eV~~~~~VtI   92 (146)
T 2ck3_H           13 PGQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQL   92 (146)
T ss_dssp             ----CCCEECSSCEEEC-----CCBCCC-----------------CCSBCCBC----------CBCSBC---------CE
T ss_pred             CCeEEEEEEcCCeeEEcCCcEEEEEEECCccCeeccCCCcceEeEecceEEEEEECCCcEEEEEEeCCEEEEeCCCEEEE
Confidence            36799999999999999537999999999999999999999999999999999977888999999999999987668999


Q ss_pred             eeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917          98 IAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV  150 (219)
Q Consensus        98 la~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V  150 (219)
                      |++.+.+.++||..+++..+++|+++|++..++.++.+++..|++++.++.++
T Consensus        93 la~~A~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~  145 (146)
T 2ck3_H           93 LAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKAL  145 (146)
T ss_dssp             EBSSBCCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC-----
T ss_pred             EeceeEehhhCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999988765

>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}

Probab=99.98  E-value=1.4e-34  Score=228.46  Aligned_cols=131  Identities=19%  Similarity=0.312  Sum_probs=122.9

Q ss_pred             cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917          17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ   96 (219)
Q Consensus        17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~   96 (219)
                      |++ |+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. ++.|+.|+++|||++|.+| .|+
T Consensus         1 Ma~-~~l~ivtP~~~~~~~-~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~-~~~~~~~~v~gGf~ev~~~-~vt   76 (135)
T 2qe7_H            1 MAT-VQVDIVTPERKVFQG-EADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQ-GDKETLIAVSGGFLEVRPD-KVN   76 (135)
T ss_dssp             CCC-CEEEEBCSSCBCCCS-CCSCEEECBSSSCEEECSCCCCCCCCBCSSCCCBCT-TSCCBCCBCCSCCEEECSS-EEE
T ss_pred             CCc-eEEEEEcCCceEEec-eEEEEEEECCcCCeEecCCCcceEeEecceEEEEEE-CCeEEEEEEcCcEEEEECC-EEE
Confidence            554 999999999999998 999999999999999999999999999999999986 4567899999999999987 899


Q ss_pred             EeeCcccCCCCCCHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhhhhc
Q psy9917          97 IIAEEAHPVDSLDASAARDVLSKAQSELSSA-SSETAKAEAQIAVEVAEALKIFVS  151 (219)
Q Consensus        97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~-~~~~~~~~~~~~l~~~~~~l~~Vs  151 (219)
                      |+++.+.+.++||+.+++..+++|+++|++. .++.++.+++.+|+++.+++....
T Consensus        77 Ila~~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~~a~~al~rA~~rl~~~~  132 (135)
T 2qe7_H           77 ILADTAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKRALERAEVRLQVAN  132 (135)
T ss_dssp             ECCSSCBCTTTSCHHHHHHHHHTTTTTTTTCCSSSSSTTTSTTTHHHHTHHHHTTS
T ss_pred             EEEeeeEEhhhCCHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999988 888899999999999999988753

>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3zry_H* 3oe7_H* 4b2q_H*

Probab=99.98  E-value=9.9e-34  Score=224.32  Aligned_cols=132  Identities=36%  Similarity=0.565  Sum_probs=112.7

Q ss_pred             ccccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceE
Q psy9917          16 GYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSV   95 (219)
Q Consensus        16 ~~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v   95 (219)
                      +..++|+|+|+||++.+|++.+|++|++||.+|+|||||||+|+|+.|.||+++|+ .+|+|++|+++|||++|.+|+.|
T Consensus         5 ~~~~~l~l~IvtP~~~~~~~~~v~~V~~p~~~Ge~GILp~H~P~it~L~~G~v~i~-~~g~~~~~~V~gGf~eV~~~~~v   83 (138)
T 3oee_H            5 AASSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVM-EGSNSKKFFISGGFATVQPDSQL   83 (138)
T ss_dssp             ------CEEEECSSCBCCC--CCSCEECCCSSSCCEECTTCCCCEEEECSEEEEEC-SSSCCEEEEECCEEEEECTTSCE
T ss_pred             cCCCcEEEEEEcCCeeEEcCCcEEEEEEECCcCCeEecCCCcceEeEecceEEEEE-ECCeEEEEEEcCeEEEEeCCCEE
Confidence            34578999999999999995479999999999999999999999999999999998 68889999999999999986689


Q ss_pred             EEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhh
Q psy9917          96 QIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIF  149 (219)
Q Consensus        96 ~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~  149 (219)
                      +|+++.+.+.++||..+++..+++|+++|++ .+++.+++++++|+..+....+
T Consensus        84 ~Ila~~A~~~~eiD~~~A~~a~e~Ae~~l~~-~~~~~~a~A~~~l~~~~~l~~a  136 (138)
T 3oee_H           84 CVTAIEAFPLESFSQENIKNLLAEAKKNVSS-SDAREAAEAAIQVEVLENLQSV  136 (138)
T ss_dssp             EEECSCC-CCSSCC-CCSSSSTTHHHHHTSC-SSSSGGGTTTHHHHHHHTTSCC
T ss_pred             EEEeccccchhhCCHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999987 5556788888988888766544

>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*

Probab=99.82  E-value=6e-22  Score=157.98  Aligned_cols=106  Identities=42%  Similarity=0.486  Sum_probs=62.6

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|++|.++....                       ......++|+|||++|+||+.||||+++|
T Consensus        41 ~~Ge~GILp~H~P~it~L~~G~v~i~~~-----------------------~g~~~~~~v~gGf~eV~~~~~VtIla~~A   97 (146)
T 2ck3_H           41 QTGAFGILAAHVPTLQVLRPGLVVVHAE-----------------------DGTTSKYFVSSGSVTVNADSSVQLLAEEA   97 (146)
T ss_dssp             -----------------CCSBCCBC---------------------------------CBCSBC---------CEEBSSB
T ss_pred             CccCeeccCCCcceEeEecceEEEEEEC-----------------------CCcEEEEEEeCCEEEEeCCCEEEEEecee
Confidence            5789999999999999999999987643                       24556789999999999985599999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhC
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS  219 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~~  219 (219)
                      ++.+|||.++|++++++|+++|.+..++.++.+|+++|+.++++..|++
T Consensus        98 ~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~~  146 (146)
T 2ck3_H           98 VTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKALE  146 (146)
T ss_dssp             CCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC------
T ss_pred             EehhhCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999988899999999999999999999874

>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.3e-21  Score=158.02  Aligned_cols=104  Identities=28%  Similarity=0.404  Sum_probs=89.5

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|++|.++...+                        .....++|+|||++|+||+.|||||++|
T Consensus        57 ~~Ge~GILp~H~Plit~L~~G~v~i~~~------------------------g~~~~~aV~gGf~eV~~~n~VtIla~~A  112 (160)
T 2xok_H           57 KSGRIGVLANHVPTVEQLLPGVVEVMEG------------------------SNSKKFFISGGFATVQPDSQLCVTAIEA  112 (160)
T ss_dssp             SSSEEEEESSCCCCEEEECSSCEEECSS------------------------SCCEEECCCCEEEEECTTSCEEEEESCC
T ss_pred             CccCeEecCCCccceeEecceEEEEEEC------------------------CEEEEEEEcCeEEEEeCCCeEEEEeeee
Confidence            3789999999999999999998886431                        3456789999999999984599999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhC
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS  219 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~~  219 (219)
                      ++.+|||.++|++++++|+++|+++ ++.++.+|+++|+.+++|++|++
T Consensus       113 ~~~~dID~~~A~~a~~~Ae~~l~~~-~~~d~~~A~~~L~~a~~l~~al~  160 (160)
T 2xok_H          113 FPLESFSQENIKNLLAEAKKNVSSS-DAREAAEAAIQVEVLENLQSVLK  160 (160)
T ss_dssp             -CCTTTC-CHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHHCC--
T ss_pred             EehhhCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999988 99999999999999999999974

>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H

Probab=99.80  E-value=2.1e-21  Score=158.09  Aligned_cols=106  Identities=42%  Similarity=0.486  Sum_probs=62.6

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|++|.++....                       ......++|+|||++|+||+.||||+++|
T Consensus        63 ~~Ge~GILp~H~Plit~L~~G~v~i~~~-----------------------~g~~~~~~V~gGf~eV~~~n~VtIla~~A  119 (168)
T 2w6j_H           63 QTGAFGILAAHVPTLQVLRPGLVVVHAE-----------------------DGTTSKYFVSSGSVTVNADSSVQLLAEEA  119 (168)
T ss_dssp             -----------------CCSBCCBC---------------------------------CBCSBC---------CEEBSSB
T ss_pred             CccCccccCCCcceEeEecceEEEEEEC-----------------------CCcEEEEEEeCCeEEEecCCeEEEEeccc
Confidence            4789999999999999999999987643                       24556789999999999963599999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhC
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS  219 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~~  219 (219)
                      ++.+|||.++|++++++|+++|++..++.++.+|+++|+.++++..|++
T Consensus       120 ~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~~  168 (168)
T 2w6j_H          120 VTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKALE  168 (168)
T ss_dssp             CCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC------
T ss_pred             CccccCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999988899999999999999999999874

>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*

Probab=99.79  E-value=2.8e-20  Score=146.99  Aligned_cols=100  Identities=22%  Similarity=0.266  Sum_probs=89.3

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|++|.++....                       ......++|+|||++|+|| .|||||++|
T Consensus        28 ~~Ge~GILp~H~p~it~L~~G~v~i~~~-----------------------~g~~~~~~v~gGf~ev~~~-~vtIla~~A   83 (138)
T 1aqt_A           28 SEGELGIYPGHAPLLTAIKPGMIRIVKQ-----------------------HGHEEFIYLSGGILEVQPG-NVTVLADTA   83 (138)
T ss_dssp             SSSEEEECTTCCCEEEEECSEEEEEEET-----------------------TTEEEEEEESSEEEEEETT-EEEEEESSE
T ss_pred             CcCCeEecCCCcceEeEecceEEEEEEC-----------------------CCcEEEEEEeCcEEEEECC-EEEEEEeeE
Confidence            5789999999999999999999887532                       1345678999999999999 599999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL  214 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l  214 (219)
                      ++.+|||.++|++++++|+++|+++.++.++.+|+++|....+-
T Consensus        84 ~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~ar  127 (138)
T 1aqt_A           84 IRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQ  127 (138)
T ss_dssp             EEGGGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHH
T ss_pred             EEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888999999999998876653

>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A

Probab=99.76  E-value=6.1e-20  Score=145.07  Aligned_cols=107  Identities=24%  Similarity=0.275  Sum_probs=90.7

Q ss_pred             ecCeEEEe---cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcC
Q psy9917          83 SSGTITVN---DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVND  159 (219)
Q Consensus        83 sgG~~~V~---~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~  159 (219)
                      +|.+-.|.   .+|+++||++|+|+++.|++|.++....                        .....+||+|||++|+|
T Consensus        16 ~~~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~------------------------~~~~~~~v~gGf~ev~~   71 (138)
T 2rq6_A           16 DAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQD------------------------REWVAIALMGGFAEVEN   71 (138)
T ss_dssp             EEEESEEEECCTTSCEEEESSCCSEEEEECSEEEEEESS------------------------SCEEEEEECSEEEEECS
T ss_pred             eeeEEEEEEECCcCCeEEcCCCcceEeEeccEEEEEEEC------------------------CeEEEEEEcCcEEEEEC
Confidence            44444443   5789999999999999999999886431                        34567899999999999


Q ss_pred             CCcEEEEecccccCCCCCHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHH
Q psy9917         160 DSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSAS---SETAKAEAQIAVEVAEAL  214 (219)
Q Consensus       160 ~~~vtvla~~A~~~~~id~~~a~~~~~~A~~~l~~~~---~~~~~~~a~~~l~~~~~l  214 (219)
                      |. |||||++|++.+|||.++|++++++|+++|+++.   ++.++.+|+++|....+-
T Consensus        72 ~~-vtIla~~A~~~~dID~~~a~~a~~~Ae~~l~~~~~~~~~~~~~~a~~aL~rA~ar  128 (138)
T 2rq6_A           72 NE-VTILVNGAERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRARAR  128 (138)
T ss_dssp             SC-EEEEESCEECSTTCCHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             CE-EEEEEeeEEEhhhCCHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHH
Confidence            95 9999999999999999999999999999998766   778899999988876653

>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A

Probab=99.76  E-value=5.5e-20  Score=144.47  Aligned_cols=106  Identities=25%  Similarity=0.286  Sum_probs=91.8

Q ss_pred             ecCeEEEe---cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcC
Q psy9917          83 SSGTITVN---DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVND  159 (219)
Q Consensus        83 sgG~~~V~---~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~  159 (219)
                      +|.+-.|.   .+|+++||++|+|+++.|++|.++.. .                       ......++|+|||++|+|
T Consensus        17 ~~~v~~V~~p~~~G~~GILp~H~p~it~L~~G~v~i~-~-----------------------~~~~~~~~v~gGf~ev~~   72 (133)
T 2e5y_A           17 EDDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLK-K-----------------------GGKTQYIAVSGGFLEVRP   72 (133)
T ss_dssp             EEEESEEEEEETTEEEEECTTCCCEEEEEEEEEEEEE-E-----------------------TTEEEEEEEEEEEEEEET
T ss_pred             eceEEEEEEECCcCCeEecCCCcceEeEecceEEEEE-E-----------------------CCeEEEEEEcCeEEEEEC
Confidence            34444443   57899999999999999999998875 2                       134567899999999999


Q ss_pred             CCcEEEEecccccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy9917         160 DSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA  213 (219)
Q Consensus       160 ~~~vtvla~~A~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~  213 (219)
                      | .|||||++|++.+|||.++|++++++|+++|+++.++.++.+|+++|....+
T Consensus        73 ~-~vtIla~~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~~  125 (133)
T 2e5y_A           73 D-KVTILAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMN  125 (133)
T ss_dssp             T-EEEEEESSEEEGGGCCHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHH
T ss_pred             C-EEEEEEeEEEEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHH
Confidence            9 5999999999999999999999999999999988888999999999887654

>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3zry_H* 3oe7_H* 4b2q_H*

Probab=99.75  E-value=1.5e-21  Score=154.26  Aligned_cols=104  Identities=29%  Similarity=0.406  Sum_probs=89.9

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|++|.++.. .                       ......++|+|||++|+||+.||||+++|
T Consensus        35 ~~Ge~GILp~H~P~it~L~~G~v~i~-~-----------------------~g~~~~~~V~gGf~eV~~~~~v~Ila~~A   90 (138)
T 3oee_H           35 KSGRIGVLANHVPTVEQLLPGVVEVM-E-----------------------GSNSKKFFISGGFATVQPDSQLCVTAIEA   90 (138)
T ss_dssp             SSSCCEECTTCCCCEEEECSEEEEEC-S-----------------------SSCCEEEEECCEEEEECTTSCEEEECSCC
T ss_pred             CcCCeEecCCCcceEeEecceEEEEE-E-----------------------CCeEEEEEEcCeEEEEeCCCEEEEEeccc
Confidence            57899999999999999999998764 2                       14566789999999999984599999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhC
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS  219 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~~  219 (219)
                      ++.+|||.++|++++++|+++|++ .++.++++|+++|+.+++|.+||.
T Consensus        91 ~~~~eiD~~~A~~a~e~Ae~~l~~-~~~~~~a~A~~~l~~~~~l~~al~  138 (138)
T 3oee_H           91 FPLESFSQENIKNLLAEAKKNVSS-SDAREAAEAAIQVEVLENLQSVLK  138 (138)
T ss_dssp             -CCSSCC-CCSSSSTTHHHHHTSC-SSSSGGGTTTHHHHHHHTTSCC--
T ss_pred             cchhhCCHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999976 566779999999999999999874

>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}

Probab=99.72  E-value=6.2e-20  Score=144.53  Aligned_cols=98  Identities=21%  Similarity=0.270  Sum_probs=86.7

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|++|.++....                        .....++|+|||++|+|| .|||||++|
T Consensus        28 ~~Ge~GILp~H~p~it~L~~G~v~i~~~------------------------~~~~~~~v~gGf~ev~~~-~vtIla~~A   82 (135)
T 2qe7_H           28 VEGELGVMAGHIPLVTPLKTAPVRIKQG------------------------DKETLIAVSGGFLEVRPD-KVNILADTA   82 (135)
T ss_dssp             SSSCEEECSCCCCCCCCBCSSCCCBCTT------------------------SCCBCCBCCSCCEEECSS-EEEECCSSC
T ss_pred             CcCCeEecCCCcceEeEecceEEEEEEC------------------------CeEEEEEEcCcEEEEECC-EEEEEEeee
Confidence            4789999999999999999999887532                        235678999999999999 599999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Q psy9917         171 HPVDSLDASAARDVLSKAQSELSSA-SSETAKAEAQIAVEVAEA  213 (219)
Q Consensus       171 ~~~~~id~~~a~~~~~~A~~~l~~~-~~~~~~~~a~~~l~~~~~  213 (219)
                      ++.+|||.++|++++++|+++|+++ .++.++.+|+++|....+
T Consensus        83 ~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~~a~~al~rA~~  126 (135)
T 2qe7_H           83 ELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKRALERAEV  126 (135)
T ss_dssp             BCTTTSCHHHHHHHHHTTTTTTTTCCSSSSSTTTSTTTHHHHTH
T ss_pred             EEhhhCCHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887 788888888888776554

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=91.86  E-value=0.44  Score=35.54  Aligned_cols=77  Identities=22%  Similarity=0.322  Sum_probs=59.3

Q ss_pred             EEEEEecCceeeecCceeEEEEecCce---eee-ecCCC--------ccceecccCeEEEEEEcCC-eEEEEEEecCeEE
Q psy9917          22 DFTLASGNKVFYTNQNVKQVDVPSFSG---AFG-ILPNH--------VPTLAILKPGVITVYETEG-VSQKIFVSSGTIT   88 (219)
Q Consensus        22 ~l~IvTP~~~~~~~~~v~~V~~~t~~G---~~g-IL~~H--------~p~it~L~~G~l~i~~~~g-~~~~~~vsgG~~~   88 (219)
                      .+.|+.--.+.|+| +|.+..+-..+|   .+| ++||-        .|-+..+..|.++++.++. +|+ -+-.|....
T Consensus        11 nVtv~kkaNvYFdG-kV~S~~~~~~dG~~kTlGVm~PGe~~YtF~T~~~E~MevvsG~l~V~Lpg~~eW~-~~~aGesF~   88 (111)
T 3hqx_A           11 HVTVIKKSNVYFGG-LCISHTVQFEDGTKKTLGVILPTEQPLTFETHVPERMEIISGECRVKIADSTESE-LFRAGQSFY   88 (111)
T ss_dssp             SCEECSSCEEETTT-TEEEEEEECTTSCEEEEEEECCCSSCEEEECSSCEEEEEEESEEEEEETTCSSCE-EEETTCEEE
T ss_pred             CEEEEEEeEEEeCC-eEEEEEEEeCCCCEEEEEEEeccccceEEcCCCcEEEEEEEeEEEEEcCCcccCE-EeCCCCEEE
Confidence            46788888889999 999999999998   477 67886        6778888899999998753 565 455677777


Q ss_pred             EecCceEEEeeC
Q psy9917          89 VNDDSSVQIIAE  100 (219)
Q Consensus        89 V~~~g~v~Ila~  100 (219)
                      |-.|..+.|-+.
T Consensus        89 VpanssF~lkv~  100 (111)
T 3hqx_A           89 VPGNSLFKIETD  100 (111)
T ss_dssp             ECTTCEEEEECS
T ss_pred             ECCCCcEEEEEC
Confidence            776656766554

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=86.75  E-value=2.5  Score=31.19  Aligned_cols=76  Identities=11%  Similarity=0.136  Sum_probs=53.9

Q ss_pred             EEEEEecCceeeecCceeEEEEecCcee---eee-cCC------CccceecccCeEEEEEEcC-CeEEEEEEecCeEEEe
Q psy9917          22 DFTLASGNKVFYTNQNVKQVDVPSFSGA---FGI-LPN------HVPTLAILKPGVITVYETE-GVSQKIFVSSGTITVN   90 (219)
Q Consensus        22 ~l~IvTP~~~~~~~~~v~~V~~~t~~G~---~gI-L~~------H~p~it~L~~G~l~i~~~~-g~~~~~~vsgG~~~V~   90 (219)
                      .+.|+.--.+.|+| +|.+..+-..+|.   +|| +||      +.|-+..+..|.++++.++ .+|+ -+-.|....|-
T Consensus        10 ~vtv~kkaNvYFDG-kV~S~~~~~~dG~~kTlGVm~PGeY~F~T~~~E~MevvsG~l~V~LpG~~eW~-~~~aGesF~Vp   87 (106)
T 3eo6_A           10 ATALGKSSRISLDG-RRSERSVILADGSMHSLTLLHPGVYTLSSEVAETIRVLSGMAYYHAEGANDVQ-ELHAGDSMVIP   87 (106)
T ss_dssp             EEEEESCCEEETTT-TEEEEEEEETTSCEEEEEEECSEEEEECCSSCEEEEEEEEEEEEECTTCSSCE-EEETTCEEEEC
T ss_pred             ceEEEEEeeEEeCC-eEEEEEEEeCCCCeEEEEEEeeeEEEecCCCcEEEEEEEeEEEEECCCCccCE-EECCCCEEEEC
Confidence            36677777889999 9999999988874   674 454      5677778888999998765 2464 44556666666


Q ss_pred             cCceEEEee
Q psy9917          91 DDSSVQIIA   99 (219)
Q Consensus        91 ~~g~v~Ila   99 (219)
                      .|..+.|-+
T Consensus        88 anssF~lkv   96 (106)
T 3eo6_A           88 ANQSYRLEV   96 (106)
T ss_dssp             SSSCEEEEE
T ss_pred             CCCcEEEEE
Confidence            554555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d2jdih2	85	b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP sy	1e-23
d2jdih2	85	b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP sy	0.002
d1aqta2	85	b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synt	4e-15
d2jdih1	44	a.2.10.1 (H:102-145) Epsilon subunit of F1F0-ATP s	1e-04
d2jdih1	44	a.2.10.1 (H:102-145) Epsilon subunit of F1F0-ATP s	8e-04

>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 85

class: All beta proteins
fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain
superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain
family: Epsilon subunit of F1F0-ATP synthase N-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.9 bits (218), Expect = 1e-23
 Identities = 48/84 (57%), Positives = 66/84 (78%)

Query: 23  FTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFV 82
           FT AS  +VF+ + NV+QVDVP+ +GAFGIL  HVPTL +L+PG++ V+  +G + K FV
Sbjct: 2   FTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFV 61

Query: 83  SSGTITVNDDSSVQIIAEEAHPVD 106
           SSG++TVN DSSVQ++AEEA  +D
Sbjct: 62  SSGSVTVNADSSVQLLAEEAVTLD 85

>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 85

class: All beta proteins
fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain
superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain
family: Epsilon subunit of F1F0-ATP synthase N-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 144 EALKIFVSSGTITVNDDSSVQIIAEEAHPVD 174
              K FVSSG++TVN DSSVQ++AEEA  +D
Sbjct: 55  TTSKYFVSSGSVTVNADSSVQLLAEEAVTLD 85

>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Escherichia coli [TaxId: 562]} Length = 85

class: All beta proteins
fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain
superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain
family: Epsilon subunit of F1F0-ATP synthase N-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 65.9 bits (161), Expect = 4e-15
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 21  MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
               + S  +  ++   V+++ V    G  GI P H P L  +KPG+I + +  G  + I
Sbjct: 3   YHLDVVSAEQQMFSGL-VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFI 61

Query: 81  FVSSGTITVNDDSSVQIIAEEA 102
           ++S G + V    +V ++A+ A
Sbjct: 62  YLSGGILEVQPG-NVTVLADTA 82

>d2jdih1 a.2.10.1 (H:102-145) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 44

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Epsilon subunit of F1F0-ATP synthase C-terminal domain
family: Epsilon subunit of F1F0-ATP synthase C-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase C-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.3 bits (83), Expect = 1e-04
 Identities = 23/42 (54%), Positives = 27/42 (64%)

Query: 176 LDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAA 217
           LD  AA+  L KAQSEL  A+ E  +AE QI +E  EALV A
Sbjct: 2   LDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKA 43

>d2jdih1 a.2.10.1 (H:102-145) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 44

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Epsilon subunit of F1F0-ATP synthase C-terminal domain
family: Epsilon subunit of F1F0-ATP synthase C-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase C-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.0 bits (77), Expect = 8e-04
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query: 108 LDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 146
           LD  AA+  L KAQSEL  A+ E  +AE QI +E  EAL
Sbjct: 2   LDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEAL 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1aqta2	85	Epsilon subunit of F1F0-ATP synthase N-terminal do	99.94
d2jdih2	85	Epsilon subunit of F1F0-ATP synthase N-terminal do	99.9
d2jdih2	85	Epsilon subunit of F1F0-ATP synthase N-terminal do	98.94
d1aqta2	85	Epsilon subunit of F1F0-ATP synthase N-terminal do	98.91
d1aqta1	50	Epsilon subunit of F1F0-ATP synthase C-terminal do	97.61
d2jdih1	44	Epsilon subunit of F1F0-ATP synthase C-terminal do	97.32
d1aqta1	50	Epsilon subunit of F1F0-ATP synthase C-terminal do	96.83
d2jdih1	44	Epsilon subunit of F1F0-ATP synthase C-terminal do	93.04

>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain
superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain
family: Epsilon subunit of F1F0-ATP synthase N-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.9e-27  Score=170.90  Aligned_cols=84  Identities=26%  Similarity=0.561  Sum_probs=80.3

Q ss_pred             cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917          19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII   98 (219)
Q Consensus        19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il   98 (219)
                      ++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||.++|+..+|+++.|+++|||++|.+| +|+|+
T Consensus         1 ~Tf~l~IvtP~~~~~~~-~v~~v~~~~~~G~~gIL~~H~p~i~~L~~g~v~i~~~~~~~~~~~v~gG~~~v~~n-~v~Il   78 (85)
T d1aqta2           1 STYHLDVVSAEQQMFSG-LVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPG-NVTVL   78 (85)
T ss_dssp             CCEEEEEEESSCEEEEE-EEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETTTEEEEEEESSEEEEEETT-EEEEE
T ss_pred             CeEEEEEECCCceEEee-EEEEEEEECCcCCEEEcCCCcceeEEecCCEEEEEECCCCEEEEEEcccEEEEECC-EEEEE
Confidence            57999999999999998 99999999999999999999999999999999999889999999999999999987 89999


Q ss_pred             eCcccC
Q psy9917          99 AEEAHP  104 (219)
Q Consensus        99 a~~a~~  104 (219)
                      ++.|..
T Consensus        79 ~~~A~r   84 (85)
T d1aqta2          79 ADTAIR   84 (85)
T ss_dssp             ESSEEE
T ss_pred             Eeeeec
Confidence            998864

>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain
superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain
family: Epsilon subunit of F1F0-ATP synthase N-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=4.8e-26  Score=164.39  Aligned_cols=83  Identities=57%  Similarity=0.924  Sum_probs=39.6

Q ss_pred             EEEEEecCceeee-cCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEeeC
Q psy9917          22 DFTLASGNKVFYT-NQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAE  100 (219)
Q Consensus        22 ~l~IvTP~~~~~~-~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila~  100 (219)
                      .|+|+||++.+|+ + +|++|++||.+|+|||||||+|+|+.|+||.++|+..+|+|++|+++|||++|++|+.+.|+++
T Consensus         1 sl~i~TP~~~~~~~~-~v~~V~~p~~~G~~gIL~~H~p~i~~L~~G~l~i~~~~g~~~~~~v~gGf~eV~~~~~v~Ilae   79 (85)
T d2jdih2           1 SFTFASPTQVFFNSA-NVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAE   79 (85)
T ss_dssp             CCCEECSSCEEEC------CCCCCC-----------------CCSBCCCC----------CBCSBC---------CEEBS
T ss_pred             CeEEECCCceeECCC-cEEEEEEECCcccEEECCCCccceeeeeCCEEEEEECCCcEEEEEECCCeEEEeCCCEEEEEee
Confidence            3789999999995 5 8999999999999999999999999999999999988889999999999999986657999998


Q ss_pred             cccCC
Q psy9917         101 EAHPV  105 (219)
Q Consensus       101 ~a~~~  105 (219)
                      .+..+
T Consensus        80 ~A~~i   84 (85)
T d2jdih2          80 EAVTL   84 (85)
T ss_dssp             SBCCS
T ss_pred             eeEeC
Confidence            88765

>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain
superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain
family: Epsilon subunit of F1F0-ATP synthase N-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.94  E-value=2e-11  Score=86.65  Aligned_cols=61  Identities=36%  Similarity=0.431  Sum_probs=23.0

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|+++.++...+                       ..+...++++|||++|.+|+.|+||||+|
T Consensus        25 ~~G~~gIL~~H~p~i~~L~~G~l~i~~~-----------------------~g~~~~~~v~gGf~eV~~~~~v~Ilae~A   81 (85)
T d2jdih2          25 QTGAFGILAAHVPTLQVLRPGLVVVHAE-----------------------DGTTSKYFVSSGSVTVNADSSVQLLAEEA   81 (85)
T ss_dssp             -----------------CCSBCCCC---------------------------------CBCSBC---------CEEBSSB
T ss_pred             CcccEEECCCCccceeeeeCCEEEEEEC-----------------------CCcEEEEEECCCeEEEeCCCEEEEEeeee
Confidence            4789999999999999999999986543                       24556789999999999875699999999


Q ss_pred             ccCC
Q psy9917         171 HPVD  174 (219)
Q Consensus       171 ~~~~  174 (219)
                      +++|
T Consensus        82 ~~iD   85 (85)
T d2jdih2          82 VTLD   85 (85)
T ss_dssp             CCSS
T ss_pred             EeCc
Confidence            8875

>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain
superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain
family: Epsilon subunit of F1F0-ATP synthase N-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=2.4e-11  Score=86.37  Aligned_cols=59  Identities=19%  Similarity=0.252  Sum_probs=50.3

Q ss_pred             cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917          91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA  170 (219)
Q Consensus        91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A  170 (219)
                      .+|+++||++|+|+++.|+++.++...+                       ..+...++++|||++|.+| .|+||+|+|
T Consensus        27 ~~G~~gIL~~H~p~i~~L~~g~v~i~~~-----------------------~~~~~~~~v~gG~~~v~~n-~v~Il~~~A   82 (85)
T d1aqta2          27 SEGELGIYPGHAPLLTAIKPGMIRIVKQ-----------------------HGHEEFIYLSGGILEVQPG-NVTVLADTA   82 (85)
T ss_dssp             SSSEEEECTTCCCEEEEECSEEEEEEET-----------------------TTEEEEEEESSEEEEEETT-EEEEEESSE
T ss_pred             CcCCEEEcCCCcceeEEecCCEEEEEEC-----------------------CCCEEEEEEcccEEEEECC-EEEEEEeee
Confidence            4789999999999999999999886432                       2345678999999999999 499999999


Q ss_pred             ccC
Q psy9917         171 HPV  173 (219)
Q Consensus       171 ~~~  173 (219)
                      +++
T Consensus        83 ~rg   85 (85)
T d1aqta2          83 IRG   85 (85)
T ss_dssp             EEG
T ss_pred             ecC
Confidence            874

>d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Epsilon subunit of F1F0-ATP synthase C-terminal domain
family: Epsilon subunit of F1F0-ATP synthase C-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=4.9e-05  Score=47.78  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=34.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy9917         174 DSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVA  211 (219)
Q Consensus       174 ~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~  211 (219)
                      +|||+.+|++++++||+.|.+..++.++.+|+++|..-
T Consensus         1 edlDearA~eAk~~AEe~l~~~~~d~dy~~a~a~La~A   38 (50)
T d1aqta1           1 QDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKA   38 (50)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHH
Confidence            58999999999999999999999999999999988653

>d2jdih1 a.2.10.1 (H:102-145) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Epsilon subunit of F1F0-ATP synthase C-terminal domain
family: Epsilon subunit of F1F0-ATP synthase C-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase C-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.32  E-value=4.2e-05  Score=45.38  Aligned_cols=43  Identities=53%  Similarity=0.597  Sum_probs=40.8

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhh
Q psy9917         176 LDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAA  218 (219)
Q Consensus       176 id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~  218 (219)
                      +|...++..+++|+..|..++|+..|+++|+.++.-+++++||
T Consensus         2 ld~~aak~nlekaqsel~~asdeaarae~~i~ieaneaivkal   44 (44)
T d2jdih1           2 LDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKAL   44 (44)
T ss_dssp             CCCSHHHHHHHHHHHHSSSCCCSSSSHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHhhHHHHHHHHhccchHHhhhhheeeehhhHHHHhhC
Confidence            6888999999999999999999999999999999999999986

>d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Epsilon subunit of F1F0-ATP synthase C-terminal domain
family: Epsilon subunit of F1F0-ATP synthase C-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.0011  Score=41.26  Aligned_cols=45  Identities=24%  Similarity=0.251  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917         106 DSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV  150 (219)
Q Consensus       106 ~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V  150 (219)
                      ++||..++...+.+|++.|.+..++.++.+++..|.++.+++.++
T Consensus         1 edlDearA~eAk~~AEe~l~~~~~d~dy~~a~a~La~A~AqL~~i   45 (50)
T d1aqta1           1 QDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVI   45 (50)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999888764

>d2jdih1 a.2.10.1 (H:102-145) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Epsilon subunit of F1F0-ATP synthase C-terminal domain
family: Epsilon subunit of F1F0-ATP synthase C-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase C-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.04  E-value=0.03  Score=32.75  Aligned_cols=42  Identities=50%  Similarity=0.530  Sum_probs=37.7

Q ss_pred             CCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhh
Q psy9917         108 LDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIF  149 (219)
Q Consensus       108 Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~  149 (219)
                      +|.+.++..++.|+..|....|+..|++++++++..++.+.+
T Consensus         2 ld~~aak~nlekaqsel~~asdeaarae~~i~ieaneaivka   43 (44)
T d2jdih1           2 LDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKA   43 (44)
T ss_dssp             CCCSHHHHHHHHHHHHSSSCCCSSSSHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHhhHHHHHHHHhccchHHhhhhheeeehhhHHHHhh
Confidence            577889999999999999999999999999999998887654