Psyllid ID: psy9969

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MKINKIYTFPFLKISRHTTNRKPRSPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDENYQPAASESWC
Secondary Structure (PSIPRED)
cccccEEEcccccEEcccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccEEEEcccccccccccccccccccccccHHHccccHHHHHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkinkiytfpflkisrhttnrkprspstvtdegdlnfdylsnfgprfrkladmygedpsdeedenyqpaaseswc
Flexible Loop (DISEMBL)
mkinkiytfpflkisrhttnrkprspstvtdegdlnFDYLSNFGPRFRKLADMYGEDpsdeedenyqpaaseswc
Low Complexity Region (SEG)
MKINKIYTFPFLKISRHTTNRKPRSPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDENYQPAASESWC
Disordered region (IsUnstruct)
****KIYTFPFLKI********************LNFDYLSNFGPRFR***************************
Disordered Region (DISOPRED)
***NKIYTFPFL************************FDYLSNFGPRFRKLADMY*********************
Disordered Region (DISEMBL)
MKINKIYTFPFLKISRH*************DEGDLNFDYLSNFGPRFRKLADMYG********************
Disordered Region (DISPRO)
MKINKIYTFPFLKISR*********PSTVTDEGDLNFDYLSNFGPRFRKLADMYGE*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKINKIYTFPFLKISRHTTNRKPRSPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDENYQPAASESWC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q24298	1507	DE-cadherin OS=Drosophila	yes	N/A	0.48	0.023	0.833	1e-11
Q90762	790	Cadherin-6 OS=Gallus gall	yes	N/A	0.506	0.048	0.578	7e-06
Q3SWX5	790	Cadherin-6 OS=Bos taurus	yes	N/A	0.506	0.048	0.578	9e-06
P97326	790	Cadherin-6 OS=Mus musculu	yes	N/A	0.506	0.048	0.578	1e-05
P55285	790	Cadherin-6 OS=Homo sapien	yes	N/A	0.506	0.048	0.552	5e-05
P55280	789	Cadherin-6 OS=Rattus norv	yes	N/A	0.506	0.048	0.552	6e-05
P70408	788	Cadherin-10 OS=Mus muscul	no	N/A	0.44	0.041	0.606	0.0001
Q9Y6N8	788	Cadherin-10 OS=Homo sapie	no	N/A	0.44	0.041	0.606	0.0001
P79995	789	Cadherin-10 OS=Gallus gal	no	N/A	0.44	0.041	0.606	0.0001
Q9ULB4	789	Cadherin-9 OS=Homo sapien	no	N/A	0.506	0.048	0.526	0.0001

>sp|Q24298|CADE_DROME DE-cadherin OS=Drosophila melanogaster GN=shg PE=1 SV=2

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 34/36 (94%)

Query: 25   SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSD 60
            S ++ TD+GDLNFDYLSNFGPRFRKLADMYGE+PSD
Sbjct: 1459 SLASCTDDGDLNFDYLSNFGPRFRKLADMYGEEPSD 1494

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. N-cadherin may be involved in neuronal recognition mechanism.
Drosophila melanogaster (taxid: 7227)

>sp|Q90762|CADH6_CHICK Cadherin-6 OS=Gallus gallus GN=CDH6 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 31/38 (81%)

Query: 25  SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
           S  +VT +GD ++DYLS++GPRF+KLADMYG   SD++
Sbjct: 752 SLESVTTDGDQDYDYLSDWGPRFKKLADMYGSMDSDKD 789

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Gallus gallus (taxid: 9031)

>sp|Q3SWX5|CADH6_BOVIN Cadherin-6 OS=Bos taurus GN=CDH6 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 31/38 (81%)

Query: 25  SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
           S  +VT +GD ++DYLS++GPRF+KLADMYG   SD++
Sbjct: 752 SLESVTTDGDQDYDYLSDWGPRFKKLADMYGGVDSDKD 789

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Bos taurus (taxid: 9913)

>sp|P97326|CADH6_MOUSE Cadherin-6 OS=Mus musculus GN=Cdh6 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 31/38 (81%)

Query: 25  SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
           S  +VT +GD ++DYLS++GPRF+KLADMYG   SD++
Sbjct: 752 SLESVTTDGDQDYDYLSDWGPRFKKLADMYGGMDSDKD 789

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Mus musculus (taxid: 10090)

>sp|P55285|CADH6_HUMAN Cadherin-6 OS=Homo sapiens GN=CDH6 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 30/38 (78%)

Query: 25  SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
           S  +VT + D ++DYLS++GPRF+KLADMYG   SD++
Sbjct: 752 SLESVTTDADQDYDYLSDWGPRFKKLADMYGGVDSDKD 789

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Homo sapiens (taxid: 9606)

>sp|P55280|CADH6_RAT Cadherin-6 OS=Rattus norvegicus GN=Cdh6 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 30/38 (78%)

Query: 25  SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
           S  +VT +GD ++ YLS++GPRF+KLADMYG   SD++
Sbjct: 751 SLESVTTDGDQDYGYLSDWGPRFKKLADMYGGMDSDKD 788

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Rattus norvegicus (taxid: 10116)

>sp|P70408|CAD10_MOUSE Cadherin-10 OS=Mus musculus GN=Cdh10 PE=2 SV=3

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 30  TDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
           T EGD N+DYL  +GPRF KLA+MYG   SD++
Sbjct: 755 TTEGDQNYDYLREWGPRFNKLAEMYGGGESDKD 787

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Mus musculus (taxid: 10090)

>sp|Q9Y6N8|CAD10_HUMAN Cadherin-10 OS=Homo sapiens GN=CDH10 PE=1 SV=2

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 30  TDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
           T EGD N+DYL  +GPRF KLA+MYG   SD++
Sbjct: 755 TTEGDQNYDYLREWGPRFNKLAEMYGGGESDKD 787

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Homo sapiens (taxid: 9606)

>sp|P79995|CAD10_CHICK Cadherin-10 OS=Gallus gallus GN=CDH10 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 30  TDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
           T EGD N+DYL  +GPRF KLA+MYG   SD++
Sbjct: 755 TTEGDQNYDYLREWGPRFNKLAEMYGGGESDKD 787

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Gallus gallus (taxid: 9031)

>sp|Q9ULB4|CADH9_HUMAN Cadherin-9 OS=Homo sapiens GN=CDH9 PE=2 SV=2

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 30/38 (78%)

Query: 25  SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
           S  ++T + + ++DYLS++GPRF+KLADMYG D SD +
Sbjct: 752 SLESLTADCNQDYDYLSDWGPRFKKLADMYGGDDSDRD 789

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
61162121	1481	Gb1-cadherin [Gryllus bimaculatus]	0.666	0.033	0.803	3e-15
242019060	1478	Cadherin-23 precursor, putative [Pedicul	0.68	0.034	0.725	6e-14
307175290	1296	DE-cadherin [Camponotus floridanus]	0.68	0.039	0.705	2e-13
345493189	1504	PREDICTED: DE-cadherin-like [Nasonia vit	0.68	0.033	0.705	2e-13
332024905	1591	DE-cadherin [Acromyrmex echinatior]	0.68	0.032	0.705	2e-13
332024902	1525	DE-cadherin [Acromyrmex echinatior]	0.68	0.033	0.686	3e-13
380016155	1489	PREDICTED: LOW QUALITY PROTEIN: DE-cadhe	0.68	0.034	0.686	6e-13
307196225	1448	DE-cadherin [Harpegnathos saltator]	0.666	0.034	0.68	5e-12
350404065	1575	PREDICTED: DE-cadherin-like [Bombus impa	0.666	0.031	0.68	7e-12
340725620	1575	PREDICTED: DE-cadherin-like [Bombus terr	0.666	0.031	0.68	8e-12

>gi|61162121|dbj|BAD91050.1| Gb1-cadherin [Gryllus bimaculatus]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/51 (80%), Positives = 45/51 (88%), Gaps = 1/51 (1%)

Query: 25   SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDENYQPAASESWC 75
            S ++ TDEGDLNFDYLSNFGPRFRKLADMYGE+PSDEE E +Q  ASESWC
Sbjct: 1432 SLASGTDEGDLNFDYLSNFGPRFRKLADMYGEEPSDEE-ETFQNPASESWC 1481

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019060|ref|XP_002429984.1| Cadherin-23 precursor, putative [Pediculus humanus corporis] gi|212515039|gb|EEB17246.1| Cadherin-23 precursor, putative [Pediculus humanus corporis]

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 42/51 (82%)

Query: 25   SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDENYQPAASESWC 75
            S ++ TDE DL+FDYLSNFGPRFRKLADMYGE PSD E ++Y   ASESWC
Sbjct: 1428 SLASCTDEEDLDFDYLSNFGPRFRKLADMYGEQPSDNESDHYTGPASESWC 1478

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175290|gb|EFN65320.1| DE-cadherin [Camponotus floridanus]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 41/51 (80%)

Query: 25   SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDENYQPAASESWC 75
            S ++ TD+GDL F+YLSNFGPRFRKLADMYGEDPSDEE +      SESWC
Sbjct: 1246 SLASCTDDGDLKFNYLSNFGPRFRKLADMYGEDPSDEESDGVGERESESWC 1296

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493189|ref|XP_001603649.2| PREDICTED: DE-cadherin-like [Nasonia vitripennis]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 41/51 (80%)

Query: 25   SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDENYQPAASESWC 75
            S ++ TD+GDL F+YLSNFGPRFRKLADMYGE+PSDEE E      SESWC
Sbjct: 1454 SLASCTDDGDLKFNYLSNFGPRFRKLADMYGEEPSDEESEGVGDRESESWC 1504

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024905|gb|EGI65093.1| DE-cadherin [Acromyrmex echinatior]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 41/51 (80%)

Query: 25   SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDENYQPAASESWC 75
            S ++ TD+GDL F+YLSNFGPRFRKLADMYGEDPSDEE +      SESWC
Sbjct: 1541 SLASCTDDGDLKFNYLSNFGPRFRKLADMYGEDPSDEESDGVGERESESWC 1591

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024902|gb|EGI65090.1| DE-cadherin [Acromyrmex echinatior]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 41/51 (80%)

Query: 25   SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDENYQPAASESWC 75
            S ++ TD+GDL F+YLSNFGPRFRKLADMYGEDPSD+E +      SESWC
Sbjct: 1475 SLASCTDDGDLKFNYLSNFGPRFRKLADMYGEDPSDDESDGVGERGSESWC 1525

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016155|ref|XP_003692054.1| PREDICTED: LOW QUALITY PROTEIN: DE-cadherin-like [Apis florea]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 41/51 (80%)

Query: 25   SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDENYQPAASESWC 75
            S ++ TD+GDL F+YLSNFGPRFRKLADMYGE+PSDEE +      SESWC
Sbjct: 1439 SLASCTDDGDLKFNYLSNFGPRFRKLADMYGEEPSDEESDGVGERESESWC 1489

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196225|gb|EFN77871.1| DE-cadherin [Harpegnathos saltator]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 40/50 (80%)

Query: 25   SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDENYQPAASESW 74
            S ++ TD+GDL F+YLSNFGPRFRKLADMYGEDPSDE+ +      SESW
Sbjct: 1320 SLASCTDDGDLKFNYLSNFGPRFRKLADMYGEDPSDEDSDGVGERESESW 1369

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404065|ref|XP_003486995.1| PREDICTED: DE-cadherin-like [Bombus impatiens]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 40/50 (80%)

Query: 25   SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDENYQPAASESW 74
            S ++ TD+GDL F+YLSNFGPRFRKLADMYGE+PSDEE +      SESW
Sbjct: 1442 SLASCTDDGDLKFNYLSNFGPRFRKLADMYGEEPSDEESDGVGERESESW 1491

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725620|ref|XP_003401166.1| PREDICTED: DE-cadherin-like [Bombus terrestris]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 40/50 (80%)

Query: 25   SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDENYQPAASESW 74
            S ++ TD+GDL F+YLSNFGPRFRKLADMYGE+PSDEE +      SESW
Sbjct: 1442 SLASCTDDGDLKFNYLSNFGPRFRKLADMYGEEPSDEESDGVGERESESW 1491

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
FB|FBgn0003391	1507	shg "shotgun" [Drosophila mela	0.533	0.026	0.780	4.5e-11
UNIPROTKB|G1K340	715	CDH6 "Cadherin-6" [Gallus gall	0.506	0.053	0.578	1.8e-06
UNIPROTKB|Q90762	790	CDH6 "Cadherin-6" [Gallus gall	0.506	0.048	0.578	2.1e-06
UNIPROTKB|F1LQP8	788	Cdh6 "Cadherin-6" [Rattus norv	0.506	0.048	0.578	3.4e-06
UNIPROTKB|Q3SWX5	790	CDH6 "Cadherin-6" [Bos taurus	0.506	0.048	0.578	3.4e-06
MGI|MGI:107435	790	Cdh6 "cadherin 6" [Mus musculu	0.506	0.048	0.578	3.4e-06
UNIPROTKB|F1LSF6	790	Cdh6 "Cadherin-6" [Rattus norv	0.506	0.048	0.578	3.4e-06
UNIPROTKB|F1SP42	791	CDH6 "Uncharacterized protein"	0.506	0.048	0.552	9.1e-06
ZFIN|ZDB-GENE-050320-92	794	cdh6 "cadherin 6" [Danio rerio	0.48	0.045	0.583	1.2e-05
UNIPROTKB|P55285	790	CDH6 "Cadherin-6" [Homo sapien	0.506	0.048	0.552	1.5e-05

FB|FBgn0003391 shg "shotgun" [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 32/41 (78%), Positives = 36/41 (87%)

Query:    25 SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEEDEN 65
             S ++ TD+GDLNFDYLSNFGPRFRKLADMYGE+PSD  D N
Sbjct:  1459 SLASCTDDGDLNFDYLSNFGPRFRKLADMYGEEPSDT-DSN 1498

GO:0005886 "plasma membrane" evidence=NAS;IDA

GO:0007156 "homophilic cell adhesion" evidence=ISS;NAS;IDA

GO:0007507 "heart development" evidence=IMP;TAS

GO:0007314 "oocyte anterior/posterior axis specification" evidence=NAS

GO:0007298 "border follicle cell migration" evidence=IMP;TAS

GO:0030708 "germarium-derived female germ-line cyst encapsulation" evidence=TAS

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS;IDA;NAS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0004872 "receptor activity" evidence=ISS

GO:0050839 "cell adhesion molecule binding" evidence=ISS

GO:0030720 "oocyte localization involved in germarium-derived egg chamber formation" evidence=TAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0002009 "morphogenesis of an epithelium" evidence=NAS;TAS

GO:0005912 "adherens junction" evidence=NAS

GO:0008356 "asymmetric cell division" evidence=IMP

GO:0008013 "beta-catenin binding" evidence=NAS

GO:0001748 "optic lobe placode development" evidence=IMP

GO:0030031 "cell projection assembly" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP;TAS

GO:0007411 "axon guidance" evidence=NAS

GO:0005914 "spot adherens junction" evidence=IDA;NAS

GO:0005915 "zonula adherens" evidence=NAS

GO:0008258 "head involution" evidence=IMP

GO:0042078 "germ-line stem cell division" evidence=TAS

GO:0048103 "somatic stem cell division" evidence=TAS

GO:0007420 "brain development" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0005913 "cell-cell adherens junction" evidence=TAS

GO:0035147 "branch fusion, open tracheal system" evidence=IMP;TAS

GO:0007297 "ovarian follicle cell migration" evidence=TAS

GO:0035019 "somatic stem cell maintenance" evidence=IMP;TAS

GO:0007280 "pole cell migration" evidence=TAS

GO:0008406 "gonad development" evidence=IMP;TAS

GO:0007506 "gonadal mesoderm development" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP;TAS

GO:0007399 "nervous system development" evidence=IMP

GO:0010004 "gastrulation involving germ band extension" evidence=IMP

GO:0045186 "zonula adherens assembly" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IGI

GO:0001738 "morphogenesis of a polarized epithelium" evidence=IMP

GO:0035262 "gonad morphogenesis" evidence=IGI;IMP

GO:0016318 "ommatidial rotation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045176 "apical protein localization" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0043296 "apical junction complex" evidence=IDA

GO:0030175 "filopodium" evidence=IDA

GO:0001745 "compound eye morphogenesis" evidence=IGI;IMP

GO:0003151 "outflow tract morphogenesis" evidence=IMP

GO:0008354 "germ cell migration" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0042060 "wound healing" evidence=IMP

GO:0071907 "determination of digestive tract left/right asymmetry" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0044331 "cell-cell adhesion mediated by cadherin" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

UNIPROTKB|G1K340 CDH6 "Cadherin-6" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 22/38 (57%), Positives = 31/38 (81%)

Query:    25 SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
             S  +VT +GD ++DYLS++GPRF+KLADMYG   SD++
Sbjct:   677 SLESVTTDGDQDYDYLSDWGPRFKKLADMYGSMDSDKD 714

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q90762 CDH6 "Cadherin-6" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 22/38 (57%), Positives = 31/38 (81%)

Query:    25 SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
             S  +VT +GD ++DYLS++GPRF+KLADMYG   SD++
Sbjct:   752 SLESVTTDGDQDYDYLSDWGPRFKKLADMYGSMDSDKD 789

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1LQP8 Cdh6 "Cadherin-6" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 22/38 (57%), Positives = 31/38 (81%)

Query:    25 SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
             S  +VT +GD ++DYLS++GPRF+KLADMYG   SD++
Sbjct:   750 SLESVTTDGDQDYDYLSDWGPRFKKLADMYGGMDSDKD 787

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q3SWX5 CDH6 "Cadherin-6" [Bos taurus (taxid:9913)]

 Score = 119 (46.9 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 22/38 (57%), Positives = 31/38 (81%)

Query:    25 SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
             S  +VT +GD ++DYLS++GPRF+KLADMYG   SD++
Sbjct:   752 SLESVTTDGDQDYDYLSDWGPRFKKLADMYGGVDSDKD 789

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:107435 Cdh6 "cadherin 6" [Mus musculus (taxid:10090)]

 Score = 119 (46.9 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 22/38 (57%), Positives = 31/38 (81%)

Query:    25 SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
             S  +VT +GD ++DYLS++GPRF+KLADMYG   SD++
Sbjct:   752 SLESVTTDGDQDYDYLSDWGPRFKKLADMYGGMDSDKD 789

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1LSF6 Cdh6 "Cadherin-6" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 22/38 (57%), Positives = 31/38 (81%)

Query:    25 SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
             S  +VT +GD ++DYLS++GPRF+KLADMYG   SD++
Sbjct:   752 SLESVTTDGDQDYDYLSDWGPRFKKLADMYGGMDSDKD 789

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SP42 CDH6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 115 (45.5 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 21/38 (55%), Positives = 30/38 (78%)

Query:    25 SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
             S  + T +GD ++DYLS++GPRF+KLADMYG   SD++
Sbjct:   753 SLESATTDGDQDYDYLSDWGPRFKKLADMYGGVDSDKD 790

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-050320-92 cdh6 "cadherin 6" [Danio rerio (taxid:7955)]

 Score = 114 (45.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/36 (58%), Positives = 29/36 (80%)

Query:    25 SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSD 60
             S  +V+ EG+ +++YLS +GPRFRKLADMYG + SD
Sbjct:   756 SLGSVSSEGEQDYNYLSEWGPRFRKLADMYGGEDSD 791

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0048793 "pronephros development" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IMP

UNIPROTKB|P55285 CDH6 "Cadherin-6" [Homo sapiens (taxid:9606)]

 Score = 113 (44.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 21/38 (55%), Positives = 30/38 (78%)

Query:    25 SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDEE 62
             S  +VT + D ++DYLS++GPRF+KLADMYG   SD++
Sbjct:   752 SLESVTTDADQDYDYLSDWGPRFKKLADMYGGVDSDKD 789

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0034329 "cell junction assembly" evidence=TAS

GO:0034332 "adherens junction organization" evidence=TAS

GO:0045216 "cell-cell junction organization" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SWX5	CADH6_BOVIN	No assigned EC number	0.5789	0.5066	0.0481	yes	N/A
Q24298	CADE_DROME	No assigned EC number	0.8333	0.48	0.0238	yes	N/A
Q90762	CADH6_CHICK	No assigned EC number	0.5789	0.5066	0.0481	yes	N/A
P55280	CADH6_RAT	No assigned EC number	0.5526	0.5066	0.0481	yes	N/A
P97326	CADH6_MOUSE	No assigned EC number	0.5789	0.5066	0.0481	yes	N/A
P55285	CADH6_HUMAN	No assigned EC number	0.5526	0.5066	0.0481	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	75
pfam01049	145	pfam01049, Cadherin_C, Cadherin cytoplasmic region	4e-12

>gnl|CDD|216265 pfam01049, Cadherin_C, Cadherin cytoplasmic region

 Score = 56.9 bits (138), Expect = 4e-12
 Identities = 17/33 (51%), Positives = 27/33 (81%)

Query: 25  SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGED 57
           S ++ + +GD ++DYLS++GPRF+KLAD+YG  
Sbjct: 113 SLNSSSSDGDQDYDYLSDWGPRFKKLADLYGGG 145

Cadherins are vital in cell-cell adhesion during tissue differentiation. Cadherins are linked to the cytoskeleton by catenins. Catenins bind to the cytoplasmic tail of the cadherin. Cadherins cluster to form foci of homophilic binding units. A key determinant to the strength of the binding that it is mediated by cadherins is the juxtamembrane region of the cadherin. This region induces clustering and also binds to the protein p120ctn. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
PF01049	149	Cadherin_C: Cadherin cytoplasmic region; InterPro:	99.83

>PF01049 Cadherin_C: Cadherin cytoplasmic region; InterPro: IPR000233 Cadherins are transmembrane glycoproteins vital in calcium-dependent cell-cell adhesion during tissue differentiation []

Probab=99.83  E-value=1.1e-21  Score=134.44  Aligned_cols=53  Identities=23%  Similarity=0.501  Sum_probs=22.8

Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCcCcchHHHHHhhcCC
Q psy9969           5 KIYTFPFLKISRHTTNRKPRSPSTVTDEGDLNFDYLSNFGPRFRKLADMYGED   57 (75)
Q Consensus         5 ~~~~~~y~~EG~gS~AGSLSSL~Ss~~d~~~~~dyL~~WGPrFq~LA~ly~~~   57 (75)
                      -+.+..|.+||.||+|||||||.|.+.+++++|+||++|||||++||+||+++
T Consensus        97 ~Dsl~~Y~~EG~gS~agSLSSL~S~s~~~~~~~~~L~~wGPkF~~LAeiy~~~  149 (149)
T PF01049_consen   97 YDSLQVYAYEGQGSSAGSLSSLESCSSDEEQDYDFLDDWGPKFRKLAEIYGDR  149 (149)
T ss_dssp             -EEEEE----------TT---------------GGGGGS-GGGHHHHHCCSS-
T ss_pred             ccceeeeccCCCCCcCCCcccccCCCcccccCchhhhhcChhHHHHHHHHccC
Confidence            34667888999999999999999988888999999999999999999999864

Cadherins cluster to form foci of homophilic binding units. A key determinant to the strength of the binding that it is mediated by cadherins is the juxtamembrane region of the cadherin. This region induces clustering and also binds to the protein p120ctn []. The cytoplasmic region is highly conserved in sequence and has been shown experimentally to regulate the cell-cell binding function of the extracellular domain of E-cadherin, possibly through interaction with the cytoskeleton []. This domain is found upstream of the cadherin domain IPR002126 from INTERPRO.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2KOH_B 3IFQ_D 1I7X_D 1I7W_D 3L6Y_F 3L6X_B.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	3e-10
1i7w_B	151	E-cadherin, epithelial-cadherin; cell adhesion, be	3e-09

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 53.3 bits (128), Expect = 3e-10
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 25  SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSDE 61
           S ++     + +++YLS++G RFRKLADMYG D  +E
Sbjct: 844 SLNSSNSNDEHDYNYLSDWGSRFRKLADMYGGDDDEE 880

>1i7w_B E-cadherin, epithelial-cadherin; cell adhesion, beta-catenin, protein-protein complex, extended interface, armadillo repeat, phosphoserin; HET: SEP; 2.00A {Mus musculus} SCOP: j.71.1.1 PDB: 1i7x_B 3ifq_C* Length = 151

 Score = 49.3 bits (117), Expect = 3e-09
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 25  SPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSD 60
           S ++   + D ++DYL+ +G RF+KLADMYG    D
Sbjct: 116 SLNSSESDQDQDYDYLNEWGNRFKKLADMYGGGEDD 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
1i7w_B	151	E-cadherin, epithelial-cadherin; cell adhesion, be	99.84
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	99.76

>1i7w_B E-cadherin, epithelial-cadherin; cell adhesion, beta-catenin, protein-protein complex, extended interface, armadillo repeat, phosphoserin; HET: SEP; 2.00A {Mus musculus} SCOP: j.71.1.1 PDB: 1i7x_B 3ifq_C*

Probab=99.84  E-value=7e-22  Score=136.28  Aligned_cols=55  Identities=29%  Similarity=0.451  Sum_probs=36.7

Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCcCcchHHHHHhhcCCCC
Q psy9969           5 KIYTFPFLKISRHTTNRKPRSPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPS   59 (75)
Q Consensus         5 ~~~~~~y~~EG~gS~AGSLSSL~Ss~~d~~~~~dyL~~WGPrFq~LA~ly~~~~~   59 (75)
                      -+.+.+|.+||.||+|||||||.|++.+.+++|+||.+|||||++||+||+..+.
T Consensus        96 ~D~l~~Y~yEG~gS~agSLSsl~S~~~~~d~d~d~L~~wGPrF~~LA~~yg~~~~  150 (151)
T 1i7w_B           96 YDSLLVFDYEGSGSEAASLSSLNSSESDQDQDYDYLNEWGNRFKKLADMYGGGED  150 (151)
T ss_dssp             CCCCCCCCCCCCCCCCTTCCCC-----------CCTTTSCGGGHHHHHHC-----
T ss_pred             ccceeeeeecCCCCccCccccccccCcccCcCchhhcccchhHHHHHHHhccCCC
Confidence            3467889999999999999999998888899999999999999999999997654

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=99.76  E-value=3.6e-20  Score=150.64  Aligned_cols=57  Identities=30%  Similarity=0.478  Sum_probs=0.0

Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCcCcchHHHHHhhcCCCCC
Q psy9969           4 NKIYTFPFLKISRHTTNRKPRSPSTVTDEGDLNFDYLSNFGPRFRKLADMYGEDPSD   60 (75)
Q Consensus         4 ~~~~~~~y~~EG~gS~AGSLSSL~Ss~~d~~~~~dyL~~WGPrFq~LA~ly~~~~~~   60 (75)
                      +.++...|.|||.||+|||||||.|+..+++++|+||++|||||+|||+||+..+.+
T Consensus       823 p~D~l~~y~yEG~gS~agSlssl~s~~~~~d~d~d~L~~~gprF~~LA~~~~~~~~~  879 (880)
T 1q55_A          823 PYDSLLVFDYEGSGSEAASLSSLNSSNSNDEHDYNYLSDWGSRFRKLADMYGGDDDE  879 (880)
T ss_dssp             ---------------------------------------------------------
T ss_pred             cccceeeecccCCCCcCCCchhcccCCCccccChhhhcccchhhHHHHHHhCCCcCC
Confidence            345778999999999999999999999999999999999999999999999987653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00