Psyllid ID: psy9976
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | 2.2.26 [Sep-21-2011] | |||||||
| P51570 | 392 | Galactokinase OS=Homo sap | yes | N/A | 0.879 | 0.783 | 0.515 | 5e-90 | |
| Q9GKK4 | 392 | Galactokinase OS=Canis fa | yes | N/A | 0.879 | 0.783 | 0.512 | 3e-87 | |
| A6H768 | 392 | Galactokinase OS=Bos taur | yes | N/A | 0.853 | 0.760 | 0.524 | 1e-86 | |
| Q9R0N0 | 391 | Galactokinase OS=Mus musc | yes | N/A | 0.888 | 0.792 | 0.495 | 8e-86 | |
| B4F0A6 | 390 | Galactokinase OS=Proteus | yes | N/A | 0.722 | 0.646 | 0.427 | 4e-53 | |
| C4LB24 | 384 | Galactokinase OS=Tolumona | yes | N/A | 0.727 | 0.661 | 0.435 | 6e-53 | |
| Q9KRP1 | 386 | Galactokinase OS=Vibrio c | yes | N/A | 0.785 | 0.709 | 0.397 | 9e-50 | |
| A0KQH8 | 382 | Galactokinase OS=Aeromona | yes | N/A | 0.727 | 0.664 | 0.412 | 1e-49 | |
| Q97EZ6 | 389 | Galactokinase OS=Clostrid | yes | N/A | 0.724 | 0.650 | 0.422 | 3e-49 | |
| Q87M60 | 386 | Galactokinase OS=Vibrio p | yes | N/A | 0.756 | 0.683 | 0.412 | 1e-48 |
| >sp|P51570|GALK1_HUMAN Galactokinase OS=Homo sapiens GN=GALK1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 331 bits (848), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 162/314 (51%), Positives = 218/314 (69%), Gaps = 7/314 (2%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWAN 79
Q +++ +++TVL+GS + L + S AD+P + F +P Q+ L PG P+WAN
Sbjct: 49 QGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWAN 108
Query: 80 YVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + AP+PGF+AV++SSVP+G GLSSSA+LEVATYTFL+ + + +
Sbjct: 109 YVKGVIQYYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG-TIAA 165
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ+AEHSFAG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D + LI N
Sbjct: 166 RAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPL-SDPKLAVLITN 224
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L+SSEY VRR QC+ V L + S R+V L+ LE A+ L+S E ++R HVV
Sbjct: 225 SNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEA--ARDLVSKEGFRRARHVV 282
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
EI RT + A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A ++PGV G R
Sbjct: 283 GEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSR 342
Query: 320 MTGGGFGGCAIALV 333
MTGGGFGGC + L+
Sbjct: 343 MTGGGFGGCTVTLL 356
|
Major enzyme for galactose metabolism. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 6 |
| >sp|Q9GKK4|GALK1_CANFA Galactokinase OS=Canis familiaris GN=GALK1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (825), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 161/314 (51%), Positives = 214/314 (68%), Gaps = 7/314 (2%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWAN 79
Q +++ ++VTVL+GS + L + S AD+P + F +P Q+ L PG P+WAN
Sbjct: 49 QGLVLPMALELVTVLVGSPRADGLVSLLTTSEDADEPRRLQFPLPTAQRSLEPGTPRWAN 108
Query: 80 YVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + AP+PGF+AV++SSVP+G GLSSSA+LEVATYTFL+ + + +
Sbjct: 109 YVKGVIQHYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG-SVAA 165
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ+AEHSFAGVPCGIMDQ ++++G+EG ALLIDC++ E +PL + + LI N
Sbjct: 166 RAQVCQQAEHSFAGVPCGIMDQLIALLGQEGHALLIDCRSLETSLVPLSEP-KLAVLITN 224
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L SSEY +RR QC+ V L + S R+V L+ LE ++L+S E ++R HVV
Sbjct: 225 SNVRHSLGSSEYPLRRRQCEEVARALGKESLREVQLEELEA--GRELVSKEGFRRARHVV 282
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
EI RT + A AL GD+ FG+LM ESH SLRDDYEVSC ELD + A S PGV G R
Sbjct: 283 GEIRRTAQAAAALCRGDYRAFGRLMVESHHSLRDDYEVSCPELDQLVEAALSAPGVYGSR 342
Query: 320 MTGGGFGGCAIALV 333
MTGGGFGGC + L+
Sbjct: 343 MTGGGFGGCTVTLL 356
|
Major enzyme for galactose metabolism. Canis familiaris (taxid: 9615) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|A6H768|GALK1_BOVIN Galactokinase OS=Bos taurus GN=GALK1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 320 bits (819), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/305 (52%), Positives = 207/305 (67%), Gaps = 7/305 (2%)
Query: 30 QVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWANYVKGVVSIF 88
++VTVL+GS + L + S AD+P + F +P Q+ L PG P WANYVKGV+ +
Sbjct: 58 ELVTVLVGSPRVDGLVSLLTTSEDADEPRRLQFPLPTSQRPLEPGTPHWANYVKGVIQHY 117
Query: 89 NDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAE 148
AP+PGF+AV++SSVP+G GLSSSA+LEVATYTFL+ + + + +A CQ AE
Sbjct: 118 P--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG-TIAARAQVCQRAE 174
Query: 149 HSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSS 208
HSFAGVPCGIMDQ ++++G+ G ALLIDC++ E +PL D + LI NSNV H L S
Sbjct: 175 HSFAGVPCGIMDQLIALLGQRGHALLIDCRSLETSLVPLSDP-KLAVLITNSNVRHSLGS 233
Query: 209 SEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKG 268
SEY +RR QC+ V L + S R+V L+ LE + L+S E ++R HVV EI RT +
Sbjct: 234 SEYPLRRRQCEEVARALGKESLREVQLEELEA--GRDLMSTEAFRRARHVVGEIQRTAQA 291
Query: 269 ANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGC 328
A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A S PGV G RMTGGGFGGC
Sbjct: 292 AAALRRGDYRAFGRLMVESHHSLRDDYEVSCPELDQLVEAALSAPGVYGSRMTGGGFGGC 351
Query: 329 AIALV 333
+ L+
Sbjct: 352 TVTLL 356
|
Major enzyme for galactose metabolism. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q9R0N0|GALK1_MOUSE Galactokinase OS=Mus musculus GN=Galk1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (812), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 159/321 (49%), Positives = 217/321 (67%), Gaps = 11/321 (3%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ-KLTPGAPKWAN 79
Q +++ ++VTV++GS + L + S AD+P + F +P Q L PG P+WAN
Sbjct: 48 QGLVLPMALELVTVMVGSPRTDGLVSLLTTSKDADEPQRLQFPLPSAQWSLEPGIPQWAN 107
Query: 80 YVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + +P+ GF+AV++SSVP+G GLSSSA+LEVATYTF++ + + +
Sbjct: 108 YVKGVIQHYP--ASPLVGFSAVVVSSVPLGGGLSSSASLEVATYTFIQQLCPDSG-AIAA 164
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ AEHSFAGVPCGIMDQ ++++G++G ALLIDC++ E +PL D + LI N
Sbjct: 165 RAQVCQRAEHSFAGVPCGIMDQLIALLGQKGYALLIDCRSLETSLVPL-SDPKLAVLITN 223
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L SSEY VRR QC+ V L + S R+V ++ LE ++L+S E ++R HVV
Sbjct: 224 SNVRHSLGSSEYPVRRRQCEEVAQALGKESLREVRMEELE--AGRELMSKEGFRRARHVV 281
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
+EI RT + A A+ GD++ FG+LM ESH SLRDDYEVSC ELD + A S+PGV G R
Sbjct: 282 SEIRRTAQAAAAMSRGDYKAFGRLMVESHYSLRDDYEVSCPELDQLVEAALSVPGVYGSR 341
Query: 320 MTGGGFGGCAIAL----VSPL 336
MTGGGFGGC + L V+PL
Sbjct: 342 MTGGGFGGCTVTLLEASVAPL 362
|
Major enzyme for galactose metabolism. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|B4F0A6|GAL1_PROMH Galactokinase OS=Proteus mirabilis (strain HI4320) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 158/262 (60%), Gaps = 10/262 (3%)
Query: 77 WANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLK 136
WANY++GV+ G + I +VP G+GLSSSAALEVA ++++ L
Sbjct: 93 WANYIRGVIHFLQQAKYVFQGMDIAITGNVPQGAGLSSSAALEVAIGQTVKTLYQ---LP 149
Query: 137 LTDK--ALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYV 194
++ K AL Q+AE+ F G CGIMDQ +S GEE ALLIDC++ + + + V
Sbjct: 150 ISQKEIALNGQKAENQFVGCNCGIMDQLISACGEESHALLIDCRSLATTAVKMPESA--V 207
Query: 195 FLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKR 254
+IINSN L SEY RR QC+ L+ + RD +L L+ K A L++D+ Y+R
Sbjct: 208 VMIINSNKKRGLVDSEYNTRRQQCEEAAKILNVTALRDATLAQLQAKKA--LMNDKVYRR 265
Query: 255 GHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPG 314
HV+TE +RT + A ALK+GD +LM +SH S+RDD+E++ E+D + +S+ G
Sbjct: 266 ARHVITENERTLQAAEALKQGDLTKLSELMAQSHISMRDDFEITVNEVDTLVEIVKSVIG 325
Query: 315 VL-GCRMTGGGFGGCAIALVSP 335
G RMTGGGFGGC +ALV+P
Sbjct: 326 SQGGVRMTGGGFGGCVVALVTP 347
|
Proteus mirabilis (strain HI4320) (taxid: 529507) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|C4LB24|GAL1_TOLAT Galactokinase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (529), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 157/262 (59%), Gaps = 8/262 (3%)
Query: 77 WANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLK 136
W+NY++GVV ++ + G N V+ +VP G+GLSSSA+LEVA ++ D L
Sbjct: 92 WSNYIRGVVKYLLEKGLSLKGLNMVVSGNVPQGAGLSSSASLEVA---IGQAFNDAYQLG 148
Query: 137 LTDKALAC--QEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYV 194
LT A+A QEAE+ F G CGIMDQ +S GE+ ALL+DC++ + R + + DD
Sbjct: 149 LTPAAIALNGQEAENKFVGCNCGIMDQMISASGEKDHALLLDCRSLQTRLVKMPDD--LA 206
Query: 195 FLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKR 254
LI++SNV L SEY RRAQC+S + RDV+L+ L+ Q L Y+R
Sbjct: 207 VLIVHSNVKRGLVDSEYNTRRAQCESAARYFGVKALRDVTLEQLQQAAEQGKLEPVVYQR 266
Query: 255 GHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPG 314
HV+TE +RT A+AL+ GD E G LM ESH+S+RDD+ ++ +D + Q G
Sbjct: 267 ARHVITENERTLAAADALETGDLEKMGVLMAESHNSMRDDFAITVPAIDTLVEILQQHIG 326
Query: 315 V-LGCRMTGGGFGGCAIALVSP 335
G RMTGGGFGGC +AL+ P
Sbjct: 327 NDGGARMTGGGFGGCVVALLRP 348
|
Tolumonas auensis (strain DSM 9187 / TA4) (taxid: 595494) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q9KRP1|GAL1_VIBCH Galactokinase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=galK PE=3 SV=2 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 159/282 (56%), Gaps = 8/282 (2%)
Query: 55 DKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSS 114
D TD FD+ + P W+NY++GV+ +R G + V+ +VP G+GLSS
Sbjct: 73 DNDTD-EFDLREEIAFQP-KKMWSNYIRGVIKCLIERGFEFNGADIVVSGNVPQGAGLSS 130
Query: 115 SAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALL 174
SAALEV + + K + + AL Q+AE+ F G CGIMDQ +S G+ A+L
Sbjct: 131 SAALEVVIGQTFKELYQLK-ISQAEIALNGQQAENQFVGCNCGIMDQMISAQGQANHAML 189
Query: 175 IDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVS 234
+DC++ + + + + Q +I+NSN L SEY RR QC++ + RDV+
Sbjct: 190 LDCRSLQTEAVAMPE--QMAVVILNSNKKRGLVESEYNTRRQQCEAAAKTFGVKALRDVT 247
Query: 235 LKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD 294
L L K A+ L KR HV+TE +RT A AL+EG+ G+LM SH S+RDD
Sbjct: 248 LAQLTAKQAE--LDPVVAKRARHVITENERTLHAAQALREGNMPRLGELMAASHASMRDD 305
Query: 295 YEVSCKELDDIAHCAQSLPG-VLGCRMTGGGFGGCAIALVSP 335
+E++ KE+D + QS+ G G RMTGGGFGGC +ALV P
Sbjct: 306 FEITVKEIDTLVEIVQSVIGDQGGVRMTGGGFGGCVVALVHP 347
|
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|A0KQH8|GAL1_AERHH Galactokinase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/262 (41%), Positives = 156/262 (59%), Gaps = 8/262 (3%)
Query: 76 KWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVAT-YTFLESITDEKT 134
+W++Y++GVV +R P+ G N V+ +VP G+GLSSSA+LEVA F E++
Sbjct: 91 RWSDYIRGVVKYLQERGYPLRGLNLVVSGNVPQGAGLSSSASLEVAIGQAFKEALG--LA 148
Query: 135 LKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYV 194
+ + AL Q+AE+ F G CGIMDQ +S G++ ALL+DC++ E R IP+ D
Sbjct: 149 ITQAEIALNGQQAENQFVGCNCGIMDQMISASGKQDHALLLDCRSLETRLIPMPTD--LA 206
Query: 195 FLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKR 254
LI+NSNV L SEY RR QC++ + RD+ L +LE A L + Y+R
Sbjct: 207 VLIVNSNVRRGLVDSEYNTRRQQCEAAARHYGVKALRDLDLAALEAGKAG--LDEVCYRR 264
Query: 255 GHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPG 314
HVV + RT A+AL +GD G+LM +SH ++RDD+E++ +D + ++ G
Sbjct: 265 ARHVVGDNSRTLAAADALAQGDLVRLGELMADSHAAMRDDFEITVPAIDGLVEIIKARIG 324
Query: 315 VL-GCRMTGGGFGGCAIALVSP 335
G RMTGGGFGGC +AL+ P
Sbjct: 325 TEGGVRMTGGGFGGCVVALLHP 346
|
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) (taxid: 380703) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q97EZ6|GAL1_CLOAB Galactokinase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (497), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/263 (42%), Positives = 158/263 (60%), Gaps = 10/263 (3%)
Query: 77 WANYVKGVVSIFNDRVAPVP-GFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTL 135
WANYVKGV+ FN + GF + S+P GSGLSSSA++EV T L + + +
Sbjct: 92 WANYVKGVIDTFNKHGHNIENGFEILFYGSIPNGSGLSSSASIEVLTGIILNDLF-KLNI 150
Query: 136 KLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVF 195
+ + CQEAE+SF GV CGIMDQ+ MG++ A+L+DC T E + L + Y
Sbjct: 151 NMVEIVKMCQEAENSFIGVNCGIMDQFSIGMGKKDCAILLDCSTLEYSYSKL-NMTGYKI 209
Query: 196 LIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVS----LKSLEDKHAQKLLSDE- 250
+I N+N L+ S+Y RR++C++ L +L +V ++++ L E + + ++SD
Sbjct: 210 VIANTNKKRGLADSKYNERRSECEAALKELQKV--KNINSLGELTEAEFEELKDIISDPV 267
Query: 251 EYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQ 310
+ +R H V E RT K +L D +TFGKLMNESH SLRDDYEV+ ELD + A
Sbjct: 268 KLRRARHAVYENQRTLKAVVSLNNNDLKTFGKLMNESHISLRDDYEVTGIELDTLVSLAL 327
Query: 311 SLPGVLGCRMTGGGFGGCAIALV 333
GV+G RMTG GFGGC +++V
Sbjct: 328 ESKGVIGSRMTGAGFGGCTVSIV 350
|
Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q87M60|GAL1_VIBPA Galactokinase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (492), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/279 (41%), Positives = 159/279 (56%), Gaps = 15/279 (5%)
Query: 62 FDIPKVQKLTPGAPK-WANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEV 120
FDI Q +T K WANY++GVV R G + + +VP G+GLSSSAALEV
Sbjct: 79 FDIT--QAITFQQDKMWANYIRGVVKCLLARGYQFTGADISVSGNVPQGAGLSSSAALEV 136
Query: 121 A---TYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDC 177
T+ L ++ + + AL Q+AE+ F G CGIMDQ +S G E A+L+DC
Sbjct: 137 VIGQTFKVLFNLE----ISQAEIALNGQQAENEFVGCNCGIMDQMISAEGRENHAMLLDC 192
Query: 178 KTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKS 237
++ E + + +D V IINSN L SEY RR QC+ + RDV+++
Sbjct: 193 RSLETEAVSMPEDMAVV--IINSNKKRGLVDSEYNTRRQQCEEAARIFGVKALRDVTIEQ 250
Query: 238 LEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEV 297
+K A+ L + KR HV+TE DRT + A AL+ D + G+LM ESH S+RDD+E+
Sbjct: 251 FNEKVAE--LDEMVAKRARHVITENDRTVEAAQALRAHDMKRMGELMAESHASMRDDFEI 308
Query: 298 SCKELDDIAHCAQSLPGVL-GCRMTGGGFGGCAIALVSP 335
+ KE+D + + + G G RMTGGGFGGC +ALV P
Sbjct: 309 TVKEIDTLVEIVKEVIGDQGGVRMTGGGFGGCIVALVPP 347
|
Vibrio parahaemolyticus (taxid: 670) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | ||||||
| 193671566 | 398 | PREDICTED: galactokinase-like [Acyrthosi | 0.856 | 0.751 | 0.545 | 5e-92 | |
| 148227080 | 388 | galactokinase 1 [Xenopus laevis] gi|4911 | 0.882 | 0.793 | 0.530 | 8e-89 | |
| 30584063 | 393 | Homo sapiens galactokinase 1 [synthetic | 0.879 | 0.781 | 0.515 | 3e-88 | |
| 332849077 | 422 | PREDICTED: galactokinase isoform 2 [Pan | 0.879 | 0.727 | 0.515 | 3e-88 | |
| 426346806 | 392 | PREDICTED: galactokinase isoform 1 [Gori | 0.879 | 0.783 | 0.515 | 3e-88 | |
| 410329631 | 422 | galactokinase 1 [Pan troglodytes] | 0.879 | 0.727 | 0.515 | 3e-88 | |
| 4503895 | 392 | galactokinase [Homo sapiens] gi|33284907 | 0.879 | 0.783 | 0.515 | 3e-88 | |
| 355754384 | 338 | hypothetical protein EGM_08178, partial | 0.853 | 0.881 | 0.524 | 1e-87 | |
| 387540982 | 392 | galactokinase [Macaca mulatta] | 0.879 | 0.783 | 0.512 | 2e-87 | |
| 355568925 | 338 | hypothetical protein EGK_08988, partial | 0.853 | 0.881 | 0.524 | 2e-87 |
| >gi|193671566|ref|XP_001950752.1| PREDICTED: galactokinase-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 167/306 (54%), Positives = 217/306 (70%), Gaps = 7/306 (2%)
Query: 31 VVTVLLGSRNNSNQIHLHS---DSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSI 87
+VT++LG NNS+ + + D + F IP V+ L G PKWANYVKGV++
Sbjct: 61 MVTIVLGRANNSDNCRVVTACNDFEETEDSNKTEFKIPSVKPLYVGTPKWANYVKGVIAC 120
Query: 88 FNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEA 147
F + GF+AVILSSVP+G GLSSSA+LEVATY+F+E+IT KT++L KA ACQ A
Sbjct: 121 FQSIIV---GFDAVILSSVPLGGGLSSSASLEVATYSFIEAITGNKTIQLVQKAKACQNA 177
Query: 148 EHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELS 207
EH FAGVPCGIMDQ++SVMG EG ALLIDCK+ + +P+ + + YVFLI NSN+HHELS
Sbjct: 178 EHMFAGVPCGIMDQFISVMGIEGHALLIDCKSLQYEPVPMTESN-YVFLITNSNIHHELS 236
Query: 208 SSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYK 267
SS+Y +RR QC+ D L+ S R +++ L H +++ YKR HV+TEI+RT
Sbjct: 237 SSQYQLRRYQCEEASDLLNVQSLRSATMEILNKVHLNGKINEIIYKRARHVITEIERTKT 296
Query: 268 GANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGG 327
A+ LK GD++TFG+LMN SH+SLRDD+EVSC ELD + A+ +PGVLG RMTGGGFGG
Sbjct: 297 AADVLKRGDYKTFGQLMNASHNSLRDDFEVSCPELDQLVELARKVPGVLGSRMTGGGFGG 356
Query: 328 CAIALV 333
C + LV
Sbjct: 357 CTVTLV 362
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|148227080|ref|NP_001085920.1| galactokinase 1 [Xenopus laevis] gi|49118537|gb|AAH73540.1| MGC82807 protein [Xenopus laevis] | Back alignment and taxonomy information |
|---|
Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 167/315 (53%), Positives = 218/315 (69%), Gaps = 7/315 (2%)
Query: 31 VVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWANYVKGVVSIFN 89
+VTV++GS + I + + + ADKP + F+ P+ K L PGAPKW+NYVKGV+ +
Sbjct: 55 LVTVIVGSPRDDGHISIVTTAEGADKPHTVEFEAPQQGKPLVPGAPKWSNYVKGVIEHY- 113
Query: 90 DRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEH 149
R PVPGFNAVI S+VP+G GLSSSA+LEVATYTFL+ + ++ KALACQ+AEH
Sbjct: 114 -RAGPVPGFNAVIASNVPLGGGLSSSASLEVATYTFLQQLCNDDG-DTVQKALACQKAEH 171
Query: 150 SFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSS 209
+FAGVPCGIMDQ++SVMG EG ALLIDC++ + +PL D V LI NSNV HEL+ S
Sbjct: 172 TFAGVPCGIMDQFISVMGREGHALLIDCRSLDVTSLPLADPGLAV-LITNSNVRHELTGS 230
Query: 210 EYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGA 269
EY RR QC+ L + S RD S++ LE ++ L+ YKR HHV++EI RT A
Sbjct: 231 EYPERRRQCEETARTLKKESLRDASMEDLE--AMKESLTKTCYKRAHHVISEITRTTDAA 288
Query: 270 NALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCA 329
+AL+ GD++ FGK M ESH+SLRDDYEVSC ELD++ A +PGV G RMTGGGFGGC
Sbjct: 289 DALQRGDYKAFGKFMVESHNSLRDDYEVSCPELDELVAIALEVPGVYGSRMTGGGFGGCT 348
Query: 330 IALVSPLNLRRGRKK 344
+ L+ R +++
Sbjct: 349 VTLLETSAAERAKQQ 363
|
Source: Xenopus laevis Species: Xenopus laevis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|30584063|gb|AAP36280.1| Homo sapiens galactokinase 1 [synthetic construct] gi|33303869|gb|AAQ02448.1| galactokinase 1, partial [synthetic construct] gi|61372443|gb|AAX43844.1| galactokinase 1 [synthetic construct] gi|61372449|gb|AAX43845.1| galactokinase 1 [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 162/314 (51%), Positives = 218/314 (69%), Gaps = 7/314 (2%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWAN 79
Q +++ +++TVL+GS + L + S AD+P + F +P Q+ L PG P+WAN
Sbjct: 49 QGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWAN 108
Query: 80 YVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + AP+PGF+AV++SSVP+G GLSSSA+LEVATYTFL+ + + +
Sbjct: 109 YVKGVIQYYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG-TIAA 165
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ+AEHSFAG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D + LI N
Sbjct: 166 RAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPL-SDPKLAVLITN 224
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L+SSEY VRR QC+ V L + S R+V L+ LE A+ L+S E ++R HVV
Sbjct: 225 SNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEA--ARDLVSKEGFRRARHVV 282
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
EI RT + A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A ++PGV G R
Sbjct: 283 GEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSR 342
Query: 320 MTGGGFGGCAIALV 333
MTGGGFGGC + L+
Sbjct: 343 MTGGGFGGCTVTLL 356
|
Source: synthetic construct Species: synthetic construct Genus: N/A Family: N/A Order: N/A Class: N/A Phylum: N/A Superkingdom: |
| >gi|332849077|ref|XP_003315781.1| PREDICTED: galactokinase isoform 2 [Pan troglodytes] gi|119609722|gb|EAW89316.1| galactokinase 1 [Homo sapiens] gi|194383614|dbj|BAG64778.1| unnamed protein product [Homo sapiens] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 162/314 (51%), Positives = 218/314 (69%), Gaps = 7/314 (2%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWAN 79
Q +++ +++TVL+GS + L + S AD+P + F +P Q+ L PG P+WAN
Sbjct: 79 QGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWAN 138
Query: 80 YVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + AP+PGF+AV++SSVP+G GLSSSA+LEVATYTFL+ + + +
Sbjct: 139 YVKGVIQYYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG-TIAA 195
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ+AEHSFAG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D + LI N
Sbjct: 196 RAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDP-KLAVLITN 254
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L+SSEY VRR QC+ V L + S R+V L+ LE A+ L+S E ++R HVV
Sbjct: 255 SNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEA--ARDLVSKEGFRRARHVV 312
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
EI RT + A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A ++PGV G R
Sbjct: 313 GEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSR 372
Query: 320 MTGGGFGGCAIALV 333
MTGGGFGGC + L+
Sbjct: 373 MTGGGFGGCTVTLL 386
|
Source: Pan troglodytes Species: Pan troglodytes Genus: Pan Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|426346806|ref|XP_004041062.1| PREDICTED: galactokinase isoform 1 [Gorilla gorilla gorilla] gi|426346808|ref|XP_004041063.1| PREDICTED: galactokinase isoform 2 [Gorilla gorilla gorilla] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 162/314 (51%), Positives = 218/314 (69%), Gaps = 7/314 (2%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWAN 79
Q +++ +++TVL+GS + L + S AD+P + F +P Q+ L PG P+WAN
Sbjct: 49 QGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTTQRSLEPGTPRWAN 108
Query: 80 YVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + AP+PGF+AV++SSVP+G GLSSSA+LEVATYTFL+ + + +
Sbjct: 109 YVKGVIQYYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG-TIAA 165
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ+AEHSFAG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D + LI N
Sbjct: 166 RAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPL-SDPKLAVLITN 224
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L+SSEY VRR QC+ V L + S R+V L+ LE A+ L+S E ++R HVV
Sbjct: 225 SNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEA--ARDLVSKEGFRRARHVV 282
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
EI RT + A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A ++PGV G R
Sbjct: 283 GEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSR 342
Query: 320 MTGGGFGGCAIALV 333
MTGGGFGGC + L+
Sbjct: 343 MTGGGFGGCTVTLL 356
|
Source: Gorilla gorilla gorilla Species: Gorilla gorilla Genus: Gorilla Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|410329631|gb|JAA33762.1| galactokinase 1 [Pan troglodytes] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 162/314 (51%), Positives = 218/314 (69%), Gaps = 7/314 (2%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWAN 79
Q +++ +++TVL+GS + L + S AD+P + F +P Q+ L PG P+WAN
Sbjct: 79 QGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWAN 138
Query: 80 YVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + AP+PGF+AV++SSVP+G GLSSSA+LEVATYTFL+ + + +
Sbjct: 139 YVKGVIQYYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG-TIAA 195
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ+AEHSFAG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D + LI N
Sbjct: 196 RAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDP-KLAVLITN 254
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L+SSEY VRR QC+ V L + S R+V L+ LE A+ L+S E ++R HVV
Sbjct: 255 SNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEA--ARDLVSKEGFRRARHVV 312
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
EI RT + A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A ++PGV G R
Sbjct: 313 GEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSR 372
Query: 320 MTGGGFGGCAIALV 333
MTGGGFGGC + L+
Sbjct: 373 MTGGGFGGCTVTLL 386
|
Source: Pan troglodytes Species: Pan troglodytes Genus: Pan Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|4503895|ref|NP_000145.1| galactokinase [Homo sapiens] gi|332849075|ref|XP_001138227.2| PREDICTED: galactokinase isoform 1 [Pan troglodytes] gi|1730187|sp|P51570.1|GALK1_HUMAN RecName: Full=Galactokinase; AltName: Full=Galactose kinase gi|1002507|gb|AAA96147.1| galactokinase [Homo sapiens] gi|1929895|gb|AAB51607.1| galactokinase [Homo sapiens] gi|12654657|gb|AAH01166.1| Galactokinase 1 [Homo sapiens] gi|30582849|gb|AAP35651.1| galactokinase 1 [Homo sapiens] gi|60655365|gb|AAX32246.1| galactokinase 1 [synthetic construct] gi|189054605|dbj|BAG37404.1| unnamed protein product [Homo sapiens] gi|410211870|gb|JAA03154.1| galactokinase 1 [Pan troglodytes] gi|410259954|gb|JAA17943.1| galactokinase 1 [Pan troglodytes] gi|410300440|gb|JAA28820.1| galactokinase 1 [Pan troglodytes] gi|1586349|prf||2203415A galactokinase | Back alignment and taxonomy information |
|---|
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 162/314 (51%), Positives = 218/314 (69%), Gaps = 7/314 (2%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWAN 79
Q +++ +++TVL+GS + L + S AD+P + F +P Q+ L PG P+WAN
Sbjct: 49 QGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWAN 108
Query: 80 YVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + AP+PGF+AV++SSVP+G GLSSSA+LEVATYTFL+ + + +
Sbjct: 109 YVKGVIQYYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG-TIAA 165
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ+AEHSFAG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D + LI N
Sbjct: 166 RAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPL-SDPKLAVLITN 224
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L+SSEY VRR QC+ V L + S R+V L+ LE A+ L+S E ++R HVV
Sbjct: 225 SNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEA--ARDLVSKEGFRRARHVV 282
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
EI RT + A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A ++PGV G R
Sbjct: 283 GEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSR 342
Query: 320 MTGGGFGGCAIALV 333
MTGGGFGGC + L+
Sbjct: 343 MTGGGFGGCTVTLL 356
|
Source: Homo sapiens Species: Homo sapiens Genus: Homo Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|355754384|gb|EHH58349.1| hypothetical protein EGM_08178, partial [Macaca fascicularis] | Back alignment and taxonomy information |
|---|
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/305 (52%), Positives = 213/305 (69%), Gaps = 7/305 (2%)
Query: 30 QVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWANYVKGVVSIF 88
++VTV++GS + L + S AD+P + F +P Q+ L PG P+WANYVKGV+ +
Sbjct: 4 ELVTVVVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYY 63
Query: 89 NDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAE 148
AP+PGF+AV++SSVP+G GLSSSA+LEVA YTFL+ + + + +A CQ+AE
Sbjct: 64 P--AAPLPGFSAVVVSSVPLGGGLSSSASLEVAMYTFLQQLCPDSG-TIAARAQVCQQAE 120
Query: 149 HSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSS 208
HSFAG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D + LI NSNV H L S
Sbjct: 121 HSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPL-SDPKLAVLITNSNVRHSLGS 179
Query: 209 SEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKG 268
SEY VRR QC+ V L + S R+V L+ LE A++L+S E ++R HVV EI RT +
Sbjct: 180 SEYPVRRRQCEEVAQALGKESLREVQLEELEA--ARELVSKEGFRRAQHVVGEIQRTAQA 237
Query: 269 ANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGC 328
A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A ++PGV G RMTGGGFGGC
Sbjct: 238 AAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGC 297
Query: 329 AIALV 333
+ L+
Sbjct: 298 TVTLL 302
|
Source: Macaca fascicularis Species: Macaca fascicularis Genus: Macaca Family: Cercopithecidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|387540982|gb|AFJ71118.1| galactokinase [Macaca mulatta] | Back alignment and taxonomy information |
|---|
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 161/314 (51%), Positives = 217/314 (69%), Gaps = 7/314 (2%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWAN 79
Q +++ ++VTV++GS + L + S AD+P + F +P Q+ L PG P+WAN
Sbjct: 49 QGLVLPMALELVTVVVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWAN 108
Query: 80 YVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + AP+PGF+AV++SSVP+G GLSSSA+LEVA YTFL+ + + +
Sbjct: 109 YVKGVIQYYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVAMYTFLQQLCPDSG-TIAA 165
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ+AEHSFAG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D + LI N
Sbjct: 166 RAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPL-SDPKLAVLITN 224
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L SSEY VRR QC+ V L + S R+V L+ LE A++L+S E ++R HVV
Sbjct: 225 SNVCHSLGSSEYPVRRRQCEEVAQALGKESLREVQLEELEA--ARELVSKEGFRRARHVV 282
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
EI RT + A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A ++PGV G R
Sbjct: 283 GEIQRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSR 342
Query: 320 MTGGGFGGCAIALV 333
MTGGGFGGC + L+
Sbjct: 343 MTGGGFGGCTVTLL 356
|
Source: Macaca mulatta Species: Macaca mulatta Genus: Macaca Family: Cercopithecidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|355568925|gb|EHH25206.1| hypothetical protein EGK_08988, partial [Macaca mulatta] | Back alignment and taxonomy information |
|---|
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 160/305 (52%), Positives = 213/305 (69%), Gaps = 7/305 (2%)
Query: 30 QVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWANYVKGVVSIF 88
++VTV++GS + L + S AD+P + F +P Q+ L PG P+WANYVKGV+ +
Sbjct: 4 ELVTVVVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYY 63
Query: 89 NDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAE 148
AP+PGF+AV++SSVP+G GLSSSA+LEVA YTFL+ + + + +A CQ+AE
Sbjct: 64 P--AAPLPGFSAVVVSSVPLGGGLSSSASLEVAMYTFLQQLCPDSG-TIAARAQVCQQAE 120
Query: 149 HSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSS 208
HSFAG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D + LI NSNV H L S
Sbjct: 121 HSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPL-SDPKLAVLITNSNVRHSLGS 179
Query: 209 SEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKG 268
SEY VRR QC+ V L + S R+V L+ LE A++L+S E ++R HVV EI RT +
Sbjct: 180 SEYPVRRRQCEEVAQALGKESLREVQLEELEA--ARELVSKEGFRRARHVVGEIQRTAQA 237
Query: 269 ANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGC 328
A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A ++PGV G RMTGGGFGGC
Sbjct: 238 AAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGC 297
Query: 329 AIALV 333
+ L+
Sbjct: 298 TVTLL 302
|
Source: Macaca mulatta Species: Macaca mulatta Genus: Macaca Family: Cercopithecidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | ||||||
| UNIPROTKB|B4E1G6 | 422 | GALK1 "Galactokinase 1" [Homo | 0.879 | 0.727 | 0.468 | 2.6e-70 | |
| UNIPROTKB|P51570 | 392 | GALK1 "Galactokinase" [Homo sa | 0.879 | 0.783 | 0.468 | 2.6e-70 | |
| UNIPROTKB|Q9GKK4 | 392 | GALK1 "Galactokinase" [Canis l | 0.879 | 0.783 | 0.464 | 1.7e-68 | |
| UNIPROTKB|A6H768 | 392 | GALK1 "Galactokinase" [Bos tau | 0.853 | 0.760 | 0.475 | 5.6e-68 | |
| UNIPROTKB|G1K1R6 | 392 | GALK1 "Galactokinase" [Bos tau | 0.853 | 0.760 | 0.475 | 5.6e-68 | |
| RGD|1305375 | 392 | Galk1 "galactokinase 1" [Rattu | 0.879 | 0.783 | 0.452 | 1.5e-67 | |
| UNIPROTKB|F1RVY7 | 420 | GALK1 "Uncharacterized protein | 0.879 | 0.730 | 0.458 | 1.9e-67 | |
| UNIPROTKB|E1C1B4 | 394 | GALK1 "Uncharacterized protein | 0.851 | 0.753 | 0.477 | 2.4e-67 | |
| MGI|MGI:95730 | 391 | Galk1 "galactokinase 1" [Mus m | 0.879 | 0.785 | 0.449 | 3.1e-67 | |
| ZFIN|ZDB-GENE-041010-79 | 393 | galk1 "galactokinase 1" [Danio | 0.845 | 0.750 | 0.454 | 1.1e-64 |
| UNIPROTKB|B4E1G6 GALK1 "Galactokinase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 147/314 (46%), Positives = 200/314 (63%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWAN 79
Q +++ +++TVL+GS + L + S AD+P + F +P Q+ L PG P+WAN
Sbjct: 79 QGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWAN 138
Query: 80 YVKGVVSIFNDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + AP+PGF+AV+ A+LEVATYTFL+ + + +
Sbjct: 139 YVKGVIQYYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGT-IAA 195
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ+AEHSFAG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D V LI N
Sbjct: 196 RAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAV-LITN 254
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L+SSEY VRR QC+ V L + S R+V L+ LE A+ L+S E ++R HVV
Sbjct: 255 SNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEA--ARDLVSKEGFRRARHVV 312
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
EI RT + A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A ++PGV G R
Sbjct: 313 GEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSR 372
Query: 320 MTXXXXXXCAIALV 333
MT C + L+
Sbjct: 373 MTGGGFGGCTVTLL 386
|
|
| UNIPROTKB|P51570 GALK1 "Galactokinase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 147/314 (46%), Positives = 200/314 (63%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWAN 79
Q +++ +++TVL+GS + L + S AD+P + F +P Q+ L PG P+WAN
Sbjct: 49 QGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWAN 108
Query: 80 YVKGVVSIFNDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + AP+PGF+AV+ A+LEVATYTFL+ + + +
Sbjct: 109 YVKGVIQYYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGT-IAA 165
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ+AEHSFAG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D V LI N
Sbjct: 166 RAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAV-LITN 224
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L+SSEY VRR QC+ V L + S R+V L+ LE A+ L+S E ++R HVV
Sbjct: 225 SNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEA--ARDLVSKEGFRRARHVV 282
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
EI RT + A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A ++PGV G R
Sbjct: 283 GEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSR 342
Query: 320 MTXXXXXXCAIALV 333
MT C + L+
Sbjct: 343 MTGGGFGGCTVTLL 356
|
|
| UNIPROTKB|Q9GKK4 GALK1 "Galactokinase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 146/314 (46%), Positives = 196/314 (62%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWAN 79
Q +++ ++VTVL+GS + L + S AD+P + F +P Q+ L PG P+WAN
Sbjct: 49 QGLVLPMALELVTVLVGSPRADGLVSLLTTSEDADEPRRLQFPLPTAQRSLEPGTPRWAN 108
Query: 80 YVKGVVSIFNDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + AP+PGF+AV+ A+LEVATYTFL+ + + +
Sbjct: 109 YVKGVIQHYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG-SVAA 165
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ+AEHSFAGVPCGIMDQ ++++G+EG ALLIDC++ E +PL + V LI N
Sbjct: 166 RAQVCQQAEHSFAGVPCGIMDQLIALLGQEGHALLIDCRSLETSLVPLSEPKLAV-LITN 224
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L SSEY +RR QC+ V L + S R+V L+ LE ++L+S E ++R HVV
Sbjct: 225 SNVRHSLGSSEYPLRRRQCEEVARALGKESLREVQLEELEA--GRELVSKEGFRRARHVV 282
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
EI RT + A AL GD+ FG+LM ESH SLRDDYEVSC ELD + A S PGV G R
Sbjct: 283 GEIRRTAQAAAALCRGDYRAFGRLMVESHHSLRDDYEVSCPELDQLVEAALSAPGVYGSR 342
Query: 320 MTXXXXXXCAIALV 333
MT C + L+
Sbjct: 343 MTGGGFGGCTVTLL 356
|
|
| UNIPROTKB|A6H768 GALK1 "Galactokinase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 145/305 (47%), Positives = 189/305 (61%)
Query: 30 QVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWANYVKGVVSIF 88
++VTVL+GS + L + S AD+P + F +P Q+ L PG P WANYVKGV+ +
Sbjct: 58 ELVTVLVGSPRVDGLVSLLTTSEDADEPRRLQFPLPTSQRPLEPGTPHWANYVKGVIQHY 117
Query: 89 NDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTLKLTDKALACQEAE 148
AP+PGF+AV+ A+LEVATYTFL+ + + + +A CQ AE
Sbjct: 118 P--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGT-IAARAQVCQRAE 174
Query: 149 HSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSS 208
HSFAGVPCGIMDQ ++++G+ G ALLIDC++ E +PL D V LI NSNV H L S
Sbjct: 175 HSFAGVPCGIMDQLIALLGQRGHALLIDCRSLETSLVPLSDPKLAV-LITNSNVRHSLGS 233
Query: 209 SEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKG 268
SEY +RR QC+ V L + S R+V L+ LE + L+S E ++R HVV EI RT +
Sbjct: 234 SEYPLRRRQCEEVARALGKESLREVQLEELEA--GRDLMSTEAFRRARHVVGEIQRTAQA 291
Query: 269 ANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTXXXXXXC 328
A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A S PGV G RMT C
Sbjct: 292 AAALRRGDYRAFGRLMVESHHSLRDDYEVSCPELDQLVEAALSAPGVYGSRMTGGGFGGC 351
Query: 329 AIALV 333
+ L+
Sbjct: 352 TVTLL 356
|
|
| UNIPROTKB|G1K1R6 GALK1 "Galactokinase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 145/305 (47%), Positives = 189/305 (61%)
Query: 30 QVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWANYVKGVVSIF 88
++VTVL+GS + L + S AD+P + F +P Q+ L PG P WANYVKGV+ +
Sbjct: 58 ELVTVLVGSPRVDGLVSLLTTSEDADEPRRLQFPLPTSQRPLEPGTPHWANYVKGVIQHY 117
Query: 89 NDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTLKLTDKALACQEAE 148
AP+PGF+AV+ A+LEVATYTFL+ + + + +A CQ AE
Sbjct: 118 P--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGT-IAARAQVCQRAE 174
Query: 149 HSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSS 208
HSFAGVPCGIMDQ ++++G+ G ALLIDC++ E +PL D V LI NSNV H L S
Sbjct: 175 HSFAGVPCGIMDQLIALLGQRGHALLIDCRSLETSLVPLSDPKLAV-LITNSNVRHSLGS 233
Query: 209 SEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKG 268
SEY +RR QC+ V L + S R+V L+ LE + L+S E ++R HVV EI RT +
Sbjct: 234 SEYPLRRRQCEEVARALGKESLREVQLEELEA--GRDLMSTEAFRRARHVVGEIQRTAQA 291
Query: 269 ANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTXXXXXXC 328
A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A S PGV G RMT C
Sbjct: 292 AAALRRGDYRAFGRLMVESHHSLRDDYEVSCPELDQLVEAALSAPGVYGSRMTGGGFGGC 351
Query: 329 AIALV 333
+ L+
Sbjct: 352 TVTLL 356
|
|
| RGD|1305375 Galk1 "galactokinase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 142/314 (45%), Positives = 197/314 (62%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ-KLTPGAPKWAN 79
Q +++ ++VTV++GS + L + S AD+P + F +P Q L PG P+WAN
Sbjct: 49 QGLVLPMALELVTVMVGSPRTDGLVSLLTTSKDADEPQRLQFPLPSAQWSLEPGIPQWAN 108
Query: 80 YVKGVVSIFNDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + +P+ GF+AV+ A+LEVATY FL+ + + +
Sbjct: 109 YVKGVIQYYP--ASPLCGFSAVVVSSVPLGGGLSSSASLEVATYAFLQQLCPDSG-SIAA 165
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ AEHSFAGVPCGIMDQ ++++G++G ALLIDC++ E +PL D V LI N
Sbjct: 166 RAQVCQRAEHSFAGVPCGIMDQLIALLGQKGYALLIDCRSLETSLVPLSDPKLTV-LITN 224
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L+SSEY +RR QC+ V L + S R+V ++ LE ++L+S E ++R HVV
Sbjct: 225 SNVRHSLASSEYPIRRRQCEEVAQALGKESLREVRMEELEA--GRELMSKEGFRRARHVV 282
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
+EI RT +GA AL GD++ FG+LM ESH SLRDDYEVSC ELD + A S+PGV G R
Sbjct: 283 SEIRRTAQGAAALSRGDYKAFGRLMVESHYSLRDDYEVSCPELDLLVEAALSVPGVYGSR 342
Query: 320 MTXXXXXXCAIALV 333
MT C + L+
Sbjct: 343 MTGGGFGGCTVTLL 356
|
|
| UNIPROTKB|F1RVY7 GALK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 144/314 (45%), Positives = 193/314 (61%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWAN 79
Q +++ ++VTVL+GS + L + S AD+P + F +P ++ L PG P WAN
Sbjct: 77 QGLVLPMALELVTVLVGSPRTDGLVSLLTTSEDADEPRRLQFPLPTDKRPLEPGTPHWAN 136
Query: 80 YVKGVVSIFNDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + AP+PGF+AV+ A+LEVATYTFL+ + + +
Sbjct: 137 YVKGVIQHYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGT-IAA 193
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ AEHSFAGVPCGIMDQ ++++G++G ALLIDC++ E +PL D V LI N
Sbjct: 194 RAQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALLIDCRSLETSLVPLSDPKLAV-LITN 252
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L SSEY +RR QC+ V L + S R+V + LE ++L+S E ++R HVV
Sbjct: 253 SNVRHSLGSSEYPLRRRQCEEVARALGKESLREVQREELEA--GRELVSGEAFRRARHVV 310
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
EI RT + A AL GD+ FG+LM ESH SLRDDYEVSC ELD + A S PGV G R
Sbjct: 311 GEIQRTAQAAAALSRGDYRAFGRLMVESHHSLRDDYEVSCPELDQLVEAALSAPGVYGSR 370
Query: 320 MTXXXXXXCAIALV 333
MT C + L+
Sbjct: 371 MTGGGFGGCTVTLL 384
|
|
| UNIPROTKB|E1C1B4 GALK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 147/308 (47%), Positives = 192/308 (62%)
Query: 30 QVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWANYVKGVVSIF 88
Q+ TVL+GS I + + + AD+P + F P + L+PG P WANYVKGV+ +
Sbjct: 58 QLGTVLVGSPTQDGTISILTTAPGADEPHRVRFPAPTQSRPLSPGRPHWANYVKGVIQHY 117
Query: 89 NDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESI---TDEKTLKLTDKALACQ 145
R PVPGFNAVI A+LEVATYTFL+ + TD+ L KALACQ
Sbjct: 118 --RGGPVPGFNAVIASDVPLGSGLSSSASLEVATYTFLQQLCPATDDGDL--VAKALACQ 173
Query: 146 EAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHE 205
+AEH+FA VPCGIMDQ++SVM +E ALLIDC++ +A +PL D + V LI NSNV H
Sbjct: 174 QAEHTFASVPCGIMDQFISVMAKENHALLIDCRSLDAVPVPLRDANLAV-LITNSNVRHA 232
Query: 206 LSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRT 265
L+ SEY RR QC+ L R + RDV++ LE ++ L +E Y+R HVV E++RT
Sbjct: 233 LTGSEYPTRRRQCQEAAAALGRTTLRDVTMAELEASRSR--LGEEVYRRARHVVGEMERT 290
Query: 266 YKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTXXXX 325
+ A AL++GD+ TFG LM ESH+SLRDDY VSC ELD + A + GV G RMT
Sbjct: 291 ARAAQALRDGDYVTFGMLMVESHNSLRDDYAVSCPELDQLVEAALEVDGVYGSRMTGGGF 350
Query: 326 XXCAIALV 333
C + L+
Sbjct: 351 GGCTVTLL 358
|
|
| MGI|MGI:95730 Galk1 "galactokinase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 141/314 (44%), Positives = 196/314 (62%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ-KLTPGAPKWAN 79
Q +++ ++VTV++GS + L + S AD+P + F +P Q L PG P+WAN
Sbjct: 48 QGLVLPMALELVTVMVGSPRTDGLVSLLTTSKDADEPQRLQFPLPSAQWSLEPGIPQWAN 107
Query: 80 YVKGVVSIFNDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + +P+ GF+AV+ A+LEVATYTF++ + + +
Sbjct: 108 YVKGVIQHYP--ASPLVGFSAVVVSSVPLGGGLSSSASLEVATYTFIQQLCPDSGA-IAA 164
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ AEHSFAGVPCGIMDQ ++++G++G ALLIDC++ E +PL D V LI N
Sbjct: 165 RAQVCQRAEHSFAGVPCGIMDQLIALLGQKGYALLIDCRSLETSLVPLSDPKLAV-LITN 223
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L SSEY VRR QC+ V L + S R+V ++ LE ++L+S E ++R HVV
Sbjct: 224 SNVRHSLGSSEYPVRRRQCEEVAQALGKESLREVRMEELEA--GRELMSKEGFRRARHVV 281
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
+EI RT + A A+ GD++ FG+LM ESH SLRDDYEVSC ELD + A S+PGV G R
Sbjct: 282 SEIRRTAQAAAAMSRGDYKAFGRLMVESHYSLRDDYEVSCPELDQLVEAALSVPGVYGSR 341
Query: 320 MTXXXXXXCAIALV 333
MT C + L+
Sbjct: 342 MTGGGFGGCTVTLL 355
|
|
| ZFIN|ZDB-GENE-041010-79 galk1 "galactokinase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 139/306 (45%), Positives = 192/306 (62%)
Query: 31 VVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTP---GAPKWANYVKGVVSI 87
+VTV++GS+ + + + + + AD+P + FD+P +LTP G P WANYVKGVV
Sbjct: 60 MVTVMVGSKTSGQKCSVLTLTEAADEPRLVDFDLPN--ELTPLLRGQPNWANYVKGVVQH 117
Query: 88 FNDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTLKLTDKALACQEA 147
+ R +PGF AVI A+LEVA YTFL+ + + ++ KA+ACQ+A
Sbjct: 118 Y--RAHSIPGFRAVIASSVPLGGGLSSSASLEVAVYTFLQQLCPDDGDQIA-KAVACQQA 174
Query: 148 EHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELS 207
EH+ A VPCGIMDQ+VSV+G+EG ALLIDC++ EA +PL D V LI NSNV H L+
Sbjct: 175 EHTHAAVPCGIMDQFVSVLGKEGHALLIDCRSLEATAVPLADPG-LVILITNSNVRHSLT 233
Query: 208 SSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYK 267
SEY RR QC+ L + S R+ +L+ LE A+ L Y+R HV+ EI+RT +
Sbjct: 234 GSEYPTRRKQCEEAAAILGKKSLREANLQDLEA--AKDRLDGVTYRRARHVIEEIERTAQ 291
Query: 268 GANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTXXXXXX 327
A A+K+GD++ FG+LM ESH+ LRD+YEVSC ELD++ A + GV G RMT
Sbjct: 292 AAEAMKQGDYKEFGRLMVESHNPLRDNYEVSCPELDELVSAALEVDGVFGSRMTGGGFGG 351
Query: 328 CAIALV 333
C + L+
Sbjct: 352 CTVTLL 357
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7MI80 | GAL1_VIBVY | 2, ., 7, ., 1, ., 6 | 0.4086 | 0.7564 | 0.6839 | yes | N/A |
| Q5E0M1 | GAL1_VIBF1 | 2, ., 7, ., 1, ., 6 | 0.3971 | 0.7679 | 0.6979 | yes | N/A |
| B9K9C8 | GAL1_THENN | 2, ., 7, ., 1, ., 6 | 0.4220 | 0.7077 | 0.7057 | yes | N/A |
| A5IMZ6 | GAL1_THEP1 | 2, ., 7, ., 1, ., 6 | 0.4154 | 0.7621 | 0.76 | yes | N/A |
| B5FP41 | GAL1_SALDC | 2, ., 7, ., 1, ., 6 | 0.4057 | 0.7650 | 0.6989 | yes | N/A |
| Q5PG77 | GAL1_SALPA | 2, ., 7, ., 1, ., 6 | 0.4 | 0.7765 | 0.7094 | yes | N/A |
| Q0ST92 | GAL1_CLOPS | 2, ., 7, ., 1, ., 6 | 0.4135 | 0.7220 | 0.6511 | yes | N/A |
| Q9GKK4 | GALK1_CANFA | 2, ., 7, ., 1, ., 6 | 0.5127 | 0.8796 | 0.7831 | yes | N/A |
| Q1CFP0 | GAL1_YERPN | 2, ., 7, ., 1, ., 6 | 0.4344 | 0.7277 | 0.6631 | yes | N/A |
| B1LCQ5 | GAL1_THESQ | 2, ., 7, ., 1, ., 6 | 0.4154 | 0.7621 | 0.76 | yes | N/A |
| Q8ZGY3 | GAL1_YERPE | 2, ., 7, ., 1, ., 6 | 0.4344 | 0.7277 | 0.6631 | yes | N/A |
| B5QX45 | GAL1_SALEP | 2, ., 7, ., 1, ., 6 | 0.4057 | 0.7650 | 0.6989 | yes | N/A |
| Q9R0N0 | GALK1_MOUSE | 2, ., 7, ., 1, ., 6 | 0.4953 | 0.8882 | 0.7928 | yes | N/A |
| B5F052 | GAL1_SALA4 | 2, ., 7, ., 1, ., 6 | 0.4057 | 0.7650 | 0.6989 | yes | N/A |
| C0PWW2 | GAL1_SALPC | 2, ., 7, ., 1, ., 6 | 0.4057 | 0.7650 | 0.6989 | yes | N/A |
| Q8DBN9 | GAL1_VIBVU | 2, ., 7, ., 1, ., 6 | 0.4086 | 0.7564 | 0.6839 | yes | N/A |
| P22713 | GAL1_SALTY | 2, ., 7, ., 1, ., 6 | 0.4057 | 0.7650 | 0.6989 | yes | N/A |
| O85253 | GAL1_THENE | 2, ., 7, ., 1, ., 6 | 0.4182 | 0.7077 | 0.7057 | yes | N/A |
| Q87M60 | GAL1_VIBPA | 2, ., 7, ., 1, ., 6 | 0.4121 | 0.7564 | 0.6839 | yes | N/A |
| B2VBV2 | GAL1_ERWT9 | 2, ., 7, ., 1, ., 6 | 0.4186 | 0.7220 | 0.6596 | yes | N/A |
| Q8XKP9 | GAL1_CLOPE | 2, ., 7, ., 1, ., 6 | 0.4135 | 0.7220 | 0.6511 | yes | N/A |
| A4TNR8 | GAL1_YERPP | 2, ., 7, ., 1, ., 6 | 0.4344 | 0.7277 | 0.6631 | yes | N/A |
| B4F0A6 | GAL1_PROMH | 2, ., 7, ., 1, ., 6 | 0.4274 | 0.7220 | 0.6461 | yes | N/A |
| B4TC28 | GAL1_SALHS | 2, ., 7, ., 1, ., 6 | 0.4057 | 0.7650 | 0.6989 | yes | N/A |
| P51570 | GALK1_HUMAN | 2, ., 7, ., 1, ., 6 | 0.5159 | 0.8796 | 0.7831 | yes | N/A |
| B4TQR9 | GAL1_SALSV | 2, ., 7, ., 1, ., 6 | 0.4021 | 0.7650 | 0.6989 | yes | N/A |
| Q1C960 | GAL1_YERPA | 2, ., 7, ., 1, ., 6 | 0.4344 | 0.7277 | 0.6631 | yes | N/A |
| P56838 | GAL1_THEMA | 2, ., 7, ., 1, ., 6 | 0.4115 | 0.7707 | 0.7685 | yes | N/A |
| B1YIH8 | GAL1_EXIS2 | 2, ., 7, ., 1, ., 6 | 0.3963 | 0.7277 | 0.6512 | yes | N/A |
| A8AJ37 | GAL1_CITK8 | 2, ., 7, ., 1, ., 6 | 0.4057 | 0.7650 | 0.6989 | yes | N/A |
| A9MTL0 | GAL1_SALPB | 2, ., 7, ., 1, ., 6 | 0.4057 | 0.7650 | 0.6989 | yes | N/A |
| A0KQH8 | GAL1_AERHH | 2, ., 7, ., 1, ., 6 | 0.4122 | 0.7277 | 0.6649 | yes | N/A |
| Q57RI3 | GAL1_SALCH | 2, ., 7, ., 1, ., 6 | 0.4057 | 0.7650 | 0.6989 | yes | N/A |
| Q97EZ6 | GAL1_CLOAB | 2, ., 7, ., 1, ., 6 | 0.4220 | 0.7249 | 0.6503 | yes | N/A |
| B4SZH7 | GAL1_SALNS | 2, ., 7, ., 1, ., 6 | 0.4057 | 0.7650 | 0.6989 | yes | N/A |
| B5R741 | GAL1_SALG2 | 2, ., 7, ., 1, ., 6 | 0.4021 | 0.7650 | 0.6989 | yes | N/A |
| A5UZX0 | GAL1_ROSS1 | 2, ., 7, ., 1, ., 6 | 0.4121 | 0.7535 | 0.6726 | yes | N/A |
| A6H768 | GALK1_BOVIN | 2, ., 7, ., 1, ., 6 | 0.5245 | 0.8538 | 0.7602 | yes | N/A |
| Q8R8R7 | GAL1_THETN | 2, ., 7, ., 1, ., 6 | 0.3704 | 0.7994 | 0.7153 | yes | N/A |
| A4W899 | GAL1_ENT38 | 2, ., 7, ., 1, ., 6 | 0.4210 | 0.7879 | 0.7198 | yes | N/A |
| Q0TQU5 | GAL1_CLOP1 | 2, ., 7, ., 1, ., 6 | 0.4135 | 0.7220 | 0.6511 | yes | N/A |
| A7MV01 | GAL1_VIBHB | 2, ., 7, ., 1, ., 6 | 0.3798 | 0.8309 | 0.7512 | yes | N/A |
| C4LB24 | GAL1_TOLAT | 2, ., 7, ., 1, ., 6 | 0.4351 | 0.7277 | 0.6614 | yes | N/A |
| A6M1P8 | GAL1_CLOB8 | 2, ., 7, ., 1, ., 6 | 0.4176 | 0.7306 | 0.6555 | yes | N/A |
| Q9KRP1 | GAL1_VIBCH | 2, ., 7, ., 1, ., 6 | 0.3971 | 0.7851 | 0.7098 | yes | N/A |
| A9R3B5 | GAL1_YERPG | 2, ., 7, ., 1, ., 6 | 0.4344 | 0.7277 | 0.6631 | yes | N/A |
| B1JST8 | GAL1_YERPY | 2, ., 7, ., 1, ., 6 | 0.4344 | 0.7277 | 0.6631 | yes | N/A |
| B5BC50 | GAL1_SALPK | 2, ., 7, ., 1, ., 6 | 0.4 | 0.7765 | 0.7094 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.7.1.6 | 0.914 |
| 3rd Layer | 2.7.1 | 0.921 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 349 | |||
| COG0153 | 390 | COG0153, GalK, Galactokinase [Carbohydrate transpo | 1e-101 | |
| PRK05322 | 387 | PRK05322, PRK05322, galactokinase; Provisional | 3e-88 | |
| PRK03817 | 351 | PRK03817, PRK03817, galactokinase; Provisional | 8e-88 | |
| PRK05101 | 382 | PRK05101, PRK05101, galactokinase; Provisional | 2e-86 | |
| TIGR00131 | 386 | TIGR00131, gal_kin, galactokinase | 3e-77 | |
| PRK00555 | 363 | PRK00555, PRK00555, galactokinase; Provisional | 8e-64 | |
| PLN02865 | 423 | PLN02865, PLN02865, galactokinase | 2e-35 | |
| PTZ00290 | 468 | PTZ00290, PTZ00290, galactokinase; Provisional | 4e-31 | |
| COG1577 | 307 | COG1577, ERG12, Mevalonate kinase [Lipid metabolis | 3e-20 | |
| TIGR00549 | 274 | TIGR00549, mevalon_kin, mevalonate kinase | 1e-18 | |
| PLN02521 | 497 | PLN02521, PLN02521, galactokinase | 5e-16 | |
| PRK03926 | 302 | PRK03926, PRK03926, mevalonate kinase; Provisional | 3e-15 | |
| PLN02521 | 497 | PLN02521, PLN02521, galactokinase | 4e-14 | |
| pfam00288 | 67 | pfam00288, GHMP_kinases_N, GHMP kinases N terminal | 6e-11 | |
| pfam08544 | 86 | pfam08544, GHMP_kinases_C, GHMP kinases C terminal | 6e-11 | |
| PTZ00298 | 328 | PTZ00298, PTZ00298, mevalonate kinase; Provisional | 1e-09 | |
| COG2605 | 333 | COG2605, COG2605, Predicted kinase related to gala | 0.001 |
| >gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 303 bits (777), Expect = e-101
Identities = 126/303 (41%), Positives = 170/303 (56%), Gaps = 8/303 (2%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRV 92
T + ++ + ++ L+S A DI F + + K WANYVKGV+ R
Sbjct: 55 TYVAVAKRDDGKVRLYS--ANFGNAGDIFFLLLDIAKEK--IDDWANYVKGVIKALQKRG 110
Query: 93 APVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFA 152
G + VI ++P+G+GLSSSAALEVA L+ + + K + A Q AE+ F
Sbjct: 111 YAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKA-ELAKIAQVAENQFV 169
Query: 153 GVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYA 212
GV CGIMDQ S G++ ALL+DC+T E +P +I+NSNV EL+ SEY
Sbjct: 170 GVNCGIMDQLASAFGKKDHALLLDCRTLEYEPVPFPVG-GVSIVIVNSNVKRELADSEYN 228
Query: 213 VRRAQCKSVLDKLHRV--SFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGAN 270
RRA+C+ + L S RDV+ + A+ + + +R HVVTE R + A
Sbjct: 229 ERRAECEEAAEFLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAK 288
Query: 271 ALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAI 330
AL+ GD FG+LMNESH+SLRDDYEV+C ELD + A + G G RMTG GFGGC I
Sbjct: 289 ALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVI 348
Query: 331 ALV 333
ALV
Sbjct: 349 ALV 351
|
Length = 390 |
| >gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional | Back alignment and domain information |
|---|
Score = 270 bits (692), Expect = 3e-88
Identities = 115/265 (43%), Positives = 162/265 (61%), Gaps = 14/265 (5%)
Query: 77 WANYVKGVVSIFNDRVAPVP-GFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTL 135
WANY KGV+ + + GF+ +I ++P G+GLSSSA++E+ T L+ + +
Sbjct: 91 WANYPKGVLKFLQEAGYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLD 150
Query: 136 KLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIP--LGDDHQY 193
+L + Q+ E+ F GV GIMDQ+ MG++ A+L+DC T E ++P LGD Y
Sbjct: 151 RL-ELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCNTLEYEYVPLDLGD---Y 206
Query: 194 VFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRV----SFRDVSLKSLEDKHAQKLLSD 249
V +I+N+N EL+ S+Y RRA+C+ L++L + S +++ + D+++ L+ D
Sbjct: 207 VIVIMNTNKRRELADSKYNERRAECEKALEELQKKLDIKSLGELTEEEF-DEYS-YLIKD 264
Query: 250 E-EYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHC 308
E KR H VTE RT K ALK GD E FG+LMN SH SLRDDYEV+ ELD +
Sbjct: 265 ETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEA 324
Query: 309 AQSLPGVLGCRMTGGGFGGCAIALV 333
A GVLG RMTG GFGGCAIA+V
Sbjct: 325 AWKQEGVLGARMTGAGFGGCAIAIV 349
|
Length = 387 |
| >gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 8e-88
Identities = 117/292 (40%), Positives = 169/292 (57%), Gaps = 18/292 (6%)
Query: 42 SNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAV 101
S + +S++ +K +F++ K++KL WA+Y+KGV+ + R V G
Sbjct: 39 SEKFIFYSENFNEEK----TFELDKLEKLN----SWADYIKGVIWVLEKRGYEVGGVKGK 90
Query: 102 ILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQ 161
+ S++P+G+GLSSSA+LEVA L + KL + AL +EAE+ F GVPCGIMDQ
Sbjct: 91 VSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKL-ELALLAREAENEFVGVPCGIMDQ 149
Query: 162 YVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSV 221
+ G++ A+ +D T E ++P +D Y L+ ++ V EL+SSEY RR +C+
Sbjct: 150 FAVAFGKKDHAIFLDTMTLEYEYVPFPED--YEILVFDTGVKRELASSEYNERRQECEEA 207
Query: 222 LDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFG 281
L L + S ++V+ + L L KR +V+ E +R K +ALKEGD ET G
Sbjct: 208 LKILGKKSSKEVTEEDLS------KLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLG 261
Query: 282 KLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333
+L+ ESH L D+YEVSC+ELD A L G G R+TG GFGG AIALV
Sbjct: 262 ELLTESHWDLADNYEVSCEELDFFVEFALEL-GAYGARLTGAGFGGSAIALV 312
|
Length = 351 |
| >gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 2e-86
Identities = 111/261 (42%), Positives = 154/261 (59%), Gaps = 6/261 (2%)
Query: 76 KWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTL 135
+WANYV+GVV +R G + VI +VP G+GLSSSA+LEVA + + L
Sbjct: 91 QWANYVRGVVKHLQERNPDFGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLP-L 149
Query: 136 KLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVF 195
+ AL QEAE+ F G CGIMDQ +S +G++ ALLIDC++ E + +P+ + V
Sbjct: 150 SGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRSLETKAVPMPEGVAVV- 208
Query: 196 LIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRG 255
IINSNV L SEY RR QC++ + RDV+L+ A+ L KR
Sbjct: 209 -IINSNVKRGLVDSEYNTRRQQCETAARFFGVKALRDVTLEQFNAVAAE--LDPVVAKRA 265
Query: 256 HHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGV 315
HV+TE RT + A+AL GD + G+LM ESH S+RDD+E++ ++D + +++ G
Sbjct: 266 RHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGD 325
Query: 316 L-GCRMTGGGFGGCAIALVSP 335
G RMTGGGFGGC +ALV
Sbjct: 326 QGGVRMTGGGFGGCIVALVPE 346
|
Length = 382 |
| >gnl|CDD|232841 TIGR00131, gal_kin, galactokinase | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 3e-77
Identities = 112/300 (37%), Positives = 153/300 (51%), Gaps = 11/300 (3%)
Query: 51 SARADKPTD-ISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVP-GFNAVILSSVPM 108
A AD S D+P WANY KGV+ + +R P G + V +VP
Sbjct: 65 LANADNKFAERSLDLPLDGSEVS---DWANYFKGVLHVAQERFNSFPLGADIVCSGNVPT 121
Query: 109 GSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGE 168
GSGLSSSAA E A L+++ L L Q AE+ F GV CGIMDQ SV+G+
Sbjct: 122 GSGLSSSAAFECAVGAVLQNMGHLP-LDSKQILLRIQVAENHFVGVNCGIMDQAASVLGK 180
Query: 169 EGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKS---VLDKL 225
E ALL++C++ +A F+I N+NV L+ S Y RR +C + L
Sbjct: 181 EDHALLVECRSLKATPFKF-PQLGIAFVIANTNVKRTLAPSNYNTRRQECTTAANFLAAT 239
Query: 226 HRVSFRDVSLKSLEDKHAQ-KLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLM 284
+ + RD + A+ + +R HVV+E R K A+K+ DF+ FG LM
Sbjct: 240 DKGALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALM 299
Query: 285 NESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKK 344
NESH S DDYE +C E+D++ A + G G RMTG GFGGC + LV N+ + R+
Sbjct: 300 NESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQA 359
|
Galactokinase is a member of the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase) and shares with them an amino-terminal domain probably related to ATP binding.The galactokinases found by This model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity [Energy metabolism, Sugars]. Length = 386 |
| >gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 8e-64
Identities = 111/285 (38%), Positives = 145/285 (50%), Gaps = 12/285 (4%)
Query: 51 SARADKPTDISFDIPKVQKLTPGAPK-WANYVKGVVSIFNDRVAPVPGFNAVILSSVPMG 109
S RAD I D TPG WA Y GV+ PVPG I S V +G
Sbjct: 50 SDRADGSARIPLDT------TPGQVTGWAAYAAGVIWALRGAGHPVPGGAMSITSDVEIG 103
Query: 110 SGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEE 169
SGLSSSAALE A + + T + +L LA Q AE+ + G P G++DQ ++ G
Sbjct: 104 SGLSSSAALECAVLGAVGAATGTRIDRLEQARLA-QRAENEYVGAPTGLLDQLAALFGAP 162
Query: 170 GSALLIDCKTHEARHIPLG-DDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRV 228
+ALLID + R + D V L+++S H + EYA RRA C+ L
Sbjct: 163 KTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRARHRHAGGEYAARRASCERAAADLGVS 222
Query: 229 SFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESH 288
S R V + L A + + +R HV+TE R A AL + DF G+L+ SH
Sbjct: 223 SLRAVQDRGLAALGA--IADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASH 280
Query: 289 DSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333
S+RDD+E++ + +D IA A G LG RMTGGGFGGC IALV
Sbjct: 281 ASMRDDFEITTERIDLIADSAVRA-GALGARMTGGGFGGCVIALV 324
|
Length = 363 |
| >gnl|CDD|215466 PLN02865, PLN02865, galactokinase | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-35
Identities = 83/301 (27%), Positives = 126/301 (41%), Gaps = 24/301 (7%)
Query: 57 PTDISFDIPKVQKLTPGAPK-------WANYVKGVVSIFNDR-VAPVPGFNAVILSSVPM 108
++ F + ++Q W +Y +G V R A G I S +
Sbjct: 82 EGEVRFRVDEIQHPIANVSSDSKEESNWGDYARGAVYALQSRGHALSQGITGYISGSEGL 141
Query: 109 -GSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMG 167
SGLSSSAA+ VA LE+ + T+ D + E+ + G+ GI+DQ ++
Sbjct: 142 DSSGLSSSAAVGVAYLLALENANN-LTVSPEDNIELDRLIENEYLGLRNGILDQSAILLS 200
Query: 168 EEGSALLIDCKTHEARHIPLGDDHQ------YVFLIINSNVHHEL-SSSEYAVRRAQCKS 220
G +DCKT + + + L Q + L+ S + H L + Y +R ++C+
Sbjct: 201 RYGCLTFMDCKTLDHKLVSL-QFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQE 259
Query: 221 VLDKLHRVSFRD-----VSLKSLEDKHAQK-LLSDEEYKRGHHVVTEIDRTYKGANALKE 274
L S D + E A K L +R H +E R KG A
Sbjct: 260 AARFLLEASGNDELEPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWAS 319
Query: 275 GDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVS 334
G+ E FGKL++ S S ++YE C+ L + PGV G R +G GF GC +A V
Sbjct: 320 GNLEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVD 379
Query: 335 P 335
Sbjct: 380 A 380
|
Length = 423 |
| >gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 4e-31
Identities = 88/316 (27%), Positives = 144/316 (45%), Gaps = 64/316 (20%)
Query: 77 WANYVKGVVSIFNDRV------APVPGFNAVILSSVPMGSGLSSSAALEVA--------- 121
W +V+G ++ +R+ + G V+ ++PMG+G+S+SA+ VA
Sbjct: 108 WTTFVRGAATLRLNRLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVV 167
Query: 122 -------------TYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGE 168
Y+ L ++ E+ ++L +A + E F GV GIMDQ++S E
Sbjct: 168 TRRYKGCPTSPGRRYSILPPMSKEELIELAKQA---RRIETEFCGVNVGIMDQFISAFAE 224
Query: 169 EGSALLIDCK--THEARHIP--LGDDHQYVFLIINSNVHHEL---SSSEYAVRRAQCKSV 221
E + +DCK T E+ + LGD FL+I+S + H+L ++ Y R+ +
Sbjct: 225 EDKFMFLDCKSLTFESHDMTPLLGDGA--CFLLIDSMIKHDLLGGTAGMYNTVRSDQEGA 282
Query: 222 LDKL--HRV-----SFRDVSL---KSLEDKHA-------QKLLSDEEYKRGHHVVTEIDR 264
K+ HR +F D+ K D + L++ E++RG + + E R
Sbjct: 283 QKKIGKHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESCKPLMTPGEFERGTYNIMEQIR 342
Query: 265 TYK------GANAL-KEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLG 317
T + L +E F G+++N H +RD +++ ELD I GV G
Sbjct: 343 TLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAG 402
Query: 318 CRMTGGGFGGCAIALV 333
RM GGGFGGC I L+
Sbjct: 403 GRMMGGGFGGCIILLL 418
|
Length = 468 |
| >gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 3e-20
Identities = 67/278 (24%), Positives = 105/278 (37%), Gaps = 52/278 (18%)
Query: 79 NYVKGVVSIFND--RVAPVPGFNAVILSSVPMGSGLSSSAALEVAT----YTFL-ESITD 131
Y++ V + ++ + + F+ I S +P+G+GL SSAA+ VA + ++
Sbjct: 63 GYIQAAVRLASELLNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSP 122
Query: 132 EKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDH 191
E+ KL +K E G G +D G G E I L
Sbjct: 123 EELAKLANKV------ELIVQGKASG-IDIATITYG--GLVAFKKGFDFEKLEIELLG-- 171
Query: 192 QYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEE 251
+I ++ V S++ V + + + D
Sbjct: 172 --TLVIGDTGVPG---STKELVAGVA---------------------KLLEEEPEVIDPI 205
Query: 252 YKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQS 311
+V E + AL+ GDFE G+LMN + L VS ELD++ A+S
Sbjct: 206 LDAIGELVQEAEA------ALQTGDFEELGELMNINQGLL-KALGVSTPELDELVEAARS 258
Query: 312 LPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKKSLDA 349
L G LG ++TG G GGC IAL + + A
Sbjct: 259 L-GALGAKLTGAGGGGCIIALAKNEEIAETLSNRLEKA 295
|
Length = 307 |
| >gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 1e-18
Identities = 71/256 (27%), Positives = 107/256 (41%), Gaps = 46/256 (17%)
Query: 79 NYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLT 138
+YV +S F++ P I S +P G GL SSAA+ VA + ++ D +L+
Sbjct: 63 SYVAEALSYFSELNPPP--LEITIDSEIPPGRGLGSSAAVAVA---LIRALADYFGSELS 117
Query: 139 DKALA--CQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFL 196
+ LA EAE G P GI D S G + K + D F+
Sbjct: 118 KEELAELANEAEKIAHGKPSGI-DTATSTS---GGPVYF-EKGEGEFTKLISLD--GYFV 170
Query: 197 IINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGH 256
I ++ V S+ E AV R ++ L ++ + + D
Sbjct: 171 IADTGVSG--STKE-AVAR-------------------VRQLLERFPELI--DSIMDA-- 204
Query: 257 HVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316
+ E+ AL++GD E+ G+LMN + L VS +LD + A+ G L
Sbjct: 205 --IGELTLE--AKAALEDGDVESLGELMNINQGLL-KALGVSHPKLDQLVEIARKA-GAL 258
Query: 317 GCRMTGGGFGGCAIAL 332
G ++TG G GGC IAL
Sbjct: 259 GAKLTGAGGGGCMIAL 274
|
This model represents mevalonate kinase, the third step in the mevalonate pathway of isopentanyl pyrophosphate (IPP) biosynthesis. IPP is a common intermediate for a number of pathways including cholesterol biosynthesis. This model covers enzymes from eukaryotes, archaea and bacteria. The related enzyme from the same pathway, phosphmevalonate kinase, serves as an outgroup for this clade. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped [Central intermediary metabolism, Other]. Length = 274 |
| >gnl|CDD|215285 PLN02521, PLN02521, galactokinase | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 5e-16
Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 234 SLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFET-----FGKLMNESH 288
SL L+ KL ++R HV +E R + + + E G LMNESH
Sbjct: 349 SLAVLKAAKHFKL-----HQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESH 403
Query: 289 DSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333
S YE SC EL+++ + G LG R+TG G+GGCA+ALV
Sbjct: 404 YSCSVLYECSCPELEELVKVCRD-NGALGARLTGAGWGGCAVALV 447
|
Length = 497 |
| >gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 3e-15
Identities = 75/322 (23%), Positives = 123/322 (38%), Gaps = 85/322 (26%)
Query: 26 MDVRQVVTVLLGSRNNSNQIHLHSDSARA-DKPTDISFDIPKVQKLTPGAPKWANYVKGV 84
+D+R V N + I++ SD + +K +S I K+++
Sbjct: 29 IDLRTYVRAEF----NDDSIYIESDYGKTGEKHPYVSAAIEKMRE--------------- 69
Query: 85 VSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALA- 143
A G I S +P+GSGL SSAA+ VAT + ++ L L+ + +A
Sbjct: 70 -------EADKDGVTVSITSQIPVGSGLGSSAAVTVAT---IGALNRLLGLGLSLEEIAK 119
Query: 144 -CQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNV 202
+ E G D YVS M G + I + + +P + ++ +
Sbjct: 120 LGHKVELLVQGAASPT-DTYVSTM---GGFVTIP----DRKKLPFPE---CGIVVGYTGS 168
Query: 203 HHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEI 262
S+ E + K EEY ++ I
Sbjct: 169 SG--STKELVANVRKLK------------------------------EEYP---ELIEPI 193
Query: 263 -----DRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLG 317
+ KG + GD+ + G+LMN + L D VS KEL ++ + A++ G LG
Sbjct: 194 LSSIGKISEKGEELILSGDYVSLGELMNINQ-GLLDALGVSTKELSELIYAART-AGALG 251
Query: 318 CRMTGGGFGGCAIALVSPLNLR 339
++TG G GGC +AL +P
Sbjct: 252 AKITGAGGGGCMVALAAPEKQS 273
|
Length = 302 |
| >gnl|CDD|215285 PLN02521, PLN02521, galactokinase | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 52/161 (32%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 26 MDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYV---- 81
M +RQ V + S ++ + + DK T +F Q++ KW NY
Sbjct: 74 MAIRQDTIVAIRRAEGSKKLRI---ANVNDKYTTCTFPADPDQEVDLANHKWGNYFICGY 130
Query: 82 KGVVSIFNDR---VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLT 138
KGV + V P G + V+ +VP GSGLSSSAAL + +I L T
Sbjct: 131 KGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAI---AIMAALGLNFT 187
Query: 139 DKALA---CQEAEHSFAGVPCGIMDQYVSVMGEEGSALLID 176
K +A C+ H G G MDQ +S+M ++G A LID
Sbjct: 188 KKEVAQFTCKCERHI--GTQSGGMDQAISIMAQQGVAKLID 226
|
Length = 497 |
| >gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-11
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 101 VILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMD 160
I S++P+G+GL SSAAL VA L + L + A EAE GV G
Sbjct: 3 EIESNIPLGAGLGSSAALAVALLLALNELFG-LPLSKEELARLALEAEG-AIGVNSGDDV 60
Query: 161 QYVSVMGE 168
SV G
Sbjct: 61 -AASVYGG 67
|
This family includes homoserine kinases, galactokinases and mevalonate kinases. Length = 67 |
| >gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 6e-11
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 271 ALKEGDFETFGKLMNESHDS--LRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGC 328
AL+EGD E G+L+NE+ S + ELD++ + L G LG +++G G G
Sbjct: 4 ALREGDLELLGELLNENALSLEPLLYLGILSPELDELLEELREL-GALGAKLSGSGGGPT 62
Query: 329 AIALVSP 335
AL
Sbjct: 63 VFALFKD 69
|
This family includes homoserine kinases, galactokinases and mevalonate kinases. Length = 86 |
| >gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-09
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 241 KHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCK 300
K Q + + + V+E AL++G+ G+LMN +HD + VSC+
Sbjct: 209 KENQPTWFNRLLENYNACVSE------AKEALQKGNLFRVGELMNANHDLCQ-KLTVSCR 261
Query: 301 ELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVS 334
ELD I ++ G LG +M+G G GG +AL +
Sbjct: 262 ELDSIVQTCRTY-GALGAKMSGTGRGGLVVALAA 294
|
Length = 328 |
| >gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 55/239 (23%), Positives = 87/239 (36%), Gaps = 41/239 (17%)
Query: 104 SSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYV 163
S P GSGL SS+A VA L + E A E E + G DQY
Sbjct: 96 SDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAY-EIEREDLKIVGGKQDQYA 154
Query: 164 SVMGEEGSALLIDCKTHEARHIPLG------DDHQYVFLIINSNVHHELSSSEYAVRRAQ 217
+ G G + E PL + + L+ + + + SSE V Q
Sbjct: 155 AAFG--GFNFMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITRQ--SSE--VIEDQ 208
Query: 218 CKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDF 277
++V+D ++LE H K L+ Y+ +AL D
Sbjct: 209 VRNVVDG---------DEETLEALHEMKALA-----------------YEMKDALVRNDI 242
Query: 278 ETFGKLMNESHDSLRD-DYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP 335
FG++++ ++ + +S +D I A G G +++G G GG + P
Sbjct: 243 PEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKN-GAYGGKLSGAGGGGFLLFFCDP 300
|
Length = 333 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| COG0153 | 390 | GalK Galactokinase [Carbohydrate transport and met | 100.0 | |
| PLN02865 | 423 | galactokinase | 100.0 | |
| PTZ00290 | 468 | galactokinase; Provisional | 100.0 | |
| PRK00555 | 363 | galactokinase; Provisional | 100.0 | |
| PRK05101 | 382 | galactokinase; Provisional | 100.0 | |
| PRK05322 | 387 | galactokinase; Provisional | 100.0 | |
| PLN02521 | 497 | galactokinase | 100.0 | |
| TIGR00131 | 386 | gal_kin galactokinase. The galactokinases found by | 100.0 | |
| PRK03817 | 351 | galactokinase; Provisional | 100.0 | |
| TIGR00549 | 273 | mevalon_kin mevalonate kinase. Paracoccus exhibits | 100.0 | |
| TIGR01220 | 358 | Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ | 100.0 | |
| COG1577 | 307 | ERG12 Mevalonate kinase [Lipid metabolism] | 100.0 | |
| PLN02677 | 387 | mevalonate kinase | 100.0 | |
| KOG0631|consensus | 489 | 100.0 | ||
| COG2605 | 333 | Predicted kinase related to galactokinase and meva | 100.0 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 100.0 | |
| PRK03926 | 302 | mevalonate kinase; Provisional | 100.0 | |
| PTZ00298 | 328 | mevalonate kinase; Provisional | 100.0 | |
| KOG1511|consensus | 397 | 100.0 | ||
| TIGR01219 | 454 | Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, | 99.97 | |
| PRK00128 | 286 | ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin | 99.95 | |
| PLN02451 | 370 | homoserine kinase | 99.95 | |
| TIGR01920 | 261 | Shik_kin_archae shikimate kinase. This model repre | 99.94 | |
| PRK01212 | 301 | homoserine kinase; Provisional | 99.94 | |
| PRK02534 | 312 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.93 | |
| COG0083 | 299 | ThrB Homoserine kinase [Amino acid transport and m | 99.93 | |
| TIGR00154 | 293 | ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin | 99.93 | |
| TIGR00191 | 302 | thrB homoserine kinase. P.aeruginosa homoserine ki | 99.92 | |
| PRK03188 | 300 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.91 | |
| PRK01123 | 282 | shikimate kinase; Provisional | 99.91 | |
| PTZ00299 | 336 | homoserine kinase; Provisional | 99.89 | |
| PRK14609 | 269 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.89 | |
| PRK14608 | 290 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.89 | |
| PRK14611 | 275 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.88 | |
| PRK14615 | 296 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.87 | |
| PRK14614 | 280 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.87 | |
| PRK14616 | 287 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.86 | |
| PRK14613 | 297 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.86 | |
| PRK14612 | 276 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.85 | |
| TIGR00144 | 324 | beta_RFAP_syn beta-RFAP synthase. This protein fam | 99.83 | |
| PRK00343 | 271 | ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin | 99.83 | |
| PRK14610 | 283 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.79 | |
| PRK00650 | 288 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.78 | |
| COG1947 | 289 | IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p | 99.75 | |
| PRK05905 | 258 | hypothetical protein; Provisional | 99.68 | |
| PF00288 | 67 | GHMP_kinases_N: GHMP kinases N terminal domain; In | 99.66 | |
| TIGR01240 | 305 | mevDPdecarb diphosphomevalonate decarboxylase. Alt | 99.65 | |
| PRK04181 | 257 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.61 | |
| COG1685 | 278 | Archaeal shikimate kinase [Amino acid transport an | 99.6 | |
| COG1907 | 312 | Predicted archaeal sugar kinases [General function | 99.55 | |
| COG4542 | 293 | PduX Protein involved in propanediol utilization, | 99.52 | |
| PF08544 | 85 | GHMP_kinases_C: GHMP kinases C terminal ; InterPro | 99.43 | |
| COG3890 | 337 | ERG8 Phosphomevalonate kinase [Lipid metabolism] | 99.37 | |
| PLN02407 | 343 | diphosphomevalonate decarboxylase | 99.29 | |
| COG3407 | 329 | MVD1 Mevalonate pyrophosphate decarboxylase [Lipid | 99.28 | |
| KOG4644|consensus | 948 | 99.26 | ||
| COG1829 | 283 | Predicted archaeal kinase (sugar kinase superfamil | 99.02 | |
| KOG4519|consensus | 459 | 98.81 | ||
| KOG1537|consensus | 355 | 98.8 | ||
| KOG2833|consensus | 395 | 98.61 | ||
| PF10509 | 52 | GalKase_gal_bdg: Galactokinase galactose-binding s | 97.31 |
| >COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-76 Score=548.01 Aligned_cols=326 Identities=37% Similarity=0.571 Sum_probs=299.4
Q ss_pred hhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCC-CCcCHhHHHHHHHHHH
Q psy9976 10 LLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTP-GAPKWANYVKGVVSIF 88 (349)
Q Consensus 10 ~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~-~~~~w~~~v~~~~~~l 88 (349)
|.|| |+|+|||+|||| |||..|++.+++++|.+++++|.++. .....+.++. ++.+ ..+.|+||+++++..+
T Consensus 34 LIGE-HtDYn~G~VlP~-Ain~~t~v~v~~r~d~~v~l~s~n~~---~~~~~~~~~~--d~~~~~~~~W~nYvkgvi~~l 106 (390)
T COG0153 34 LIGE-HTDYNGGFVLPC-AINYGTYVAVAKRDDGKVRLYSANFG---NAGDIFFLLL--DIAKEKIDDWANYVKGVIKAL 106 (390)
T ss_pred eecc-ceeccCceEEEE-EeecceEEEEEEccCceEEEEeCCCc---cccceeecch--hhcccccchhhhhHHHHHHHH
Confidence 3455 789999999999 99999999999999999999999873 2233344432 2322 3478999999999999
Q ss_pred HhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhcc
Q psy9976 89 NDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGE 168 (349)
Q Consensus 89 ~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg 168 (349)
++.|+.++|+++.|.||||.|+|||||||++||++.++.++++.++ ++.+++++|+.+|+.|+|.|||+|||+++.||+
T Consensus 107 ~~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~-~k~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G~ 185 (390)
T COG0153 107 QKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPL-DKAELAKIAQVAENQFVGVNCGIMDQLASAFGK 185 (390)
T ss_pred HhcCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhhccCCcCchHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhch--hccCCCCHHHHHHHHhccc
Q psy9976 169 EGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHR--VSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 169 ~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~--~~l~~~~~~~~~~~~~~~~ 246 (349)
+|+++++||++++++++|+|. .++.++|+||++++.++.++||.||+||++|++.|++ +.|++++.+.+.+. ...
T Consensus 186 ~~~al~ld~~~l~~~~~~~p~-~~~~ivI~ns~vkr~la~seYn~Rr~ece~A~~~l~~~~~~L~d~~~~~~~~~--~~~ 262 (390)
T COG0153 186 KDHALLLDCRTLEYEPVPFPV-GGVSIVIVNSNVKRELADSEYNERRAECEEAAEFLGVSIKSLRDVTDEEFAAL--QAE 262 (390)
T ss_pred CCcEEEEEcccCceEEeccCc-cceEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHhh--hhh
Confidence 999999999999999999997 4599999999999999999999999999999999999 99999999998876 333
Q ss_pred C--CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccC
Q psy9976 247 L--SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGG 324 (349)
Q Consensus 247 l--~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG 324 (349)
+ ++..++|+.|+++|++||.++++||+++|+.+||+||++||.+||++|++||||+|+|+++|....|++|+||||||
T Consensus 263 i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~~GaRmTGaG 342 (390)
T COG0153 263 IEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAG 342 (390)
T ss_pred cccchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCcccceecCCC
Confidence 4 46788999999999999999999999999999999999999999999999999999999999875788999999999
Q ss_pred ccceeEEEeCCCchhhhhhhcc
Q psy9976 325 FGGCAIALVSPLNLRRGRKKKS 346 (349)
Q Consensus 325 ~GG~~i~l~~~~~~~~~~~~~~ 346 (349)
||||+|+|++.+.+++|+++++
T Consensus 343 fGGc~IaLv~~~~v~~~~e~v~ 364 (390)
T COG0153 343 FGGCVIALVPNDDVEAVAEAVA 364 (390)
T ss_pred CCceEEEEechhhHHHHHHHHH
Confidence 9999999999999999888764
|
|
| >PLN02865 galactokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-68 Score=513.27 Aligned_cols=327 Identities=25% Similarity=0.370 Sum_probs=292.3
Q ss_pred hhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcc-c------CCCCCcCHhHHHH
Q psy9976 10 LLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ-K------LTPGAPKWANYVK 82 (349)
Q Consensus 10 ~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~-~------l~~~~~~w~~~v~ 82 (349)
|.|| |+|++||+|||| |||++++++++|++|++|+|.|.++ +...+|+++..+ + .....++|+||++
T Consensus 41 lIGE-HtDYngG~VLp~-AI~~~~~va~~~~~~~~i~v~s~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~Yv~ 114 (423)
T PLN02865 41 PLGA-HIDHQGGTVSAM-TINKGILLGFVPSGDPEVLLRSAQF----EGEVRFRVDEIQHPIANVSSDSKEESNWGDYAR 114 (423)
T ss_pred cccc-cccCCCCeEEeE-EeeccEEEEEEECCCCEEEEEECCC----CCceEEeccccccccccccccCCCCCCHHHHHH
Confidence 4555 799999999999 9999999999999999999999876 233566654210 0 1123467999999
Q ss_pred HHHHHHHhcCCCC-CceEEEEEeCC-CCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy9976 83 GVVSIFNDRVAPV-PGFNAVILSSV-PMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMD 160 (349)
Q Consensus 83 ~~~~~l~~~~~~~-~g~~i~i~s~i-P~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D 160 (349)
+++..+.+.+... +||++.|++++ |+|+|||||||++||++.++..+++.++ ++++++++|+++|+.++|.|||+||
T Consensus 115 gv~~~l~~~g~~~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~-~~~~la~~a~~~E~~~~G~~~G~mD 193 (423)
T PLN02865 115 GAVYALQSRGHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTV-SPEDNIELDRLIENEYLGLRNGILD 193 (423)
T ss_pred HHHHHHHHcCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCCcccc
Confidence 9999998888766 69999999999 5799999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhccCCeEEEEecCCCeeEEeeCCCC-----CCeEEEEEeCCCCcccC-hhhHHHHHHHHHHHHHHhc--------
Q psy9976 161 QYVSVMGEEGSALLIDCKTHEARHIPLGDD-----HQYVFLIINSNVHHELS-SSEYAVRRAQCKSVLDKLH-------- 226 (349)
Q Consensus 161 ~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~-----~~~~~ll~~s~~~~~~~-~~~y~~r~~~~~~a~~~l~-------- 226 (349)
|+++++|..|+++++||+++.++++|+|.+ .++.|++++|+++|..+ +..||.||.||+.|+++|+
T Consensus 194 Q~as~~~~~g~~~~iDf~~l~~~~vpl~~~~~~~~~~~~ivv~~s~~~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~~~~ 273 (423)
T PLN02865 194 QSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAARFLLEASGNDEL 273 (423)
T ss_pred HHHHHhcccCceEEEEccCCCcceeecCcccccCCCCeEEEEEeCCCchhhcccchhhHHHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999999988888887631 26889999999999977 7899999999999999996
Q ss_pred hhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHH
Q psy9976 227 RVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIA 306 (349)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~ 306 (349)
..+||+++.+++.+. +..+++..++|+.|+++|+.||.+++++|+++|++.||++|++||.++|++|++||||+|.|+
T Consensus 274 ~~~Lr~~~~~~~~~~--~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~~sh~Slrd~yevS~~eld~lv 351 (423)
T PLN02865 274 EPLLCNVEPEVYEAH--KCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGLSSIENYECGCEPLIQLY 351 (423)
T ss_pred hhhhhcCCHHHHHHH--HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhHHhhccCCcHHHHHHH
Confidence 467899998888765 555788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 307 HCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 307 ~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
+.+++.+|++|+||||||||||+++|++.+.+++|+++.
T Consensus 352 ~~a~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v 390 (423)
T PLN02865 352 EILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFV 390 (423)
T ss_pred HHHHhcCCCeEEEEeccCCccEEEEEEchhHHHHHHHHH
Confidence 999985699999999999999999999999999887764
|
|
| >PTZ00290 galactokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=499.77 Aligned_cols=324 Identities=24% Similarity=0.414 Sum_probs=270.1
Q ss_pred hhhhceeeeCCcEEEecccccceEEEEEEec---CCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 10 LLKSLMVKKRLQWIIMMDVRQVVTVLLGSRN---NSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 10 ~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~---~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+|| |+|++||+|||| |||++++++++++ +++++++.+... . .|+++.. ......+.|+||++++++
T Consensus 48 LIGE-HtDYngG~VLp~-AId~~~~va~~~~~~~~~~~i~~~~~~~-----~--~~~~~~~-~~~~~~~~W~nYv~gv~~ 117 (468)
T PTZ00290 48 FIGE-HVDYMGGYVCPA-AVLEGCHILVGRVKHFCDHKLRFATETD-----E--HFVLDHL-GGAKHNKAWTTFVRGAAT 117 (468)
T ss_pred eccc-ccccCCCeeeec-cccCcEEEEEeecCCCCCCeEEEEECCC-----c--eeecCcc-cccCCcccHHHHHHHHHH
Confidence 3454 789999999999 9999999998765 678899955441 1 3444321 111234679999999998
Q ss_pred H-HHhcCCC-----CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCC-----------------CC--CCHHHHH
Q psy9976 87 I-FNDRVAP-----VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDE-----------------KT--LKLTDKA 141 (349)
Q Consensus 87 ~-l~~~~~~-----~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~-----------------~~--~~~~~l~ 141 (349)
. +++.+.. ++||++.|.|+||+|+|||||||++||++.|++.+++. .+ .+..+++
T Consensus 118 ~~l~~~g~~~~~~~~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA 197 (468)
T PTZ00290 118 LRLNRLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELA 197 (468)
T ss_pred HHHHHhCCCcccCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHH
Confidence 6 6556663 47999999999999999999999999999999998632 12 1458999
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCeeEEeeCCC--CCCeEEEEEeCCCCcccChh---hHHHHHH
Q psy9976 142 LACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGD--DHQYVFLIINSNVHHELSSS---EYAVRRA 216 (349)
Q Consensus 142 ~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~--~~~~~~ll~~s~~~~~~~~~---~y~~r~~ 216 (349)
++|+++|++|+|.|||+|||+++++|++|+++++||++++++++|++. .+++.|+|+||+++|++.++ +||.||.
T Consensus 198 ~~aqraEn~~vGv~cGiMDQ~asa~g~~~~al~iD~~~l~~~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ 277 (468)
T PTZ00290 198 KQARRIETEFCGVNVGIMDQFISAFAEEDKFMFLDCKSLTFESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRS 277 (468)
T ss_pred HHHHHHHHhhcCCCcchhhHHHHHhCCCCcEEEEecCCCeEEEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHH
Confidence 999999999999999999999999999999999999999999998753 14799999999999997655 9999999
Q ss_pred HHHHHHHHhchhccCCCC------------------HHHHH-HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHh----
Q psy9976 217 QCKSVLDKLHRVSFRDVS------------------LKSLE-DKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALK---- 273 (349)
Q Consensus 217 ~~~~a~~~l~~~~l~~~~------------------~~~~~-~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~---- 273 (349)
||+.|++.|++..+++++ ..++. .. +..+++..++|++|+++|++||.+++++|+
T Consensus 278 ece~a~~~L~~~~l~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~Ra~HVitEn~RV~~a~~al~~~~~ 355 (468)
T PTZ00290 278 DQEGAQKKIGKHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESC--KPLMTPGEFERGTYNIMEQIRTLEFIKLNDPELP 355 (468)
T ss_pred HHHHHHHHhccccccchhhhHHHhhhccccccccccHHHHHHHh--hhcCCHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Confidence 999999999875554331 12231 22 355688899999999999999999999995
Q ss_pred ---cCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 274 ---EGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 274 ---~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
++|+..||++|++||.+||++|++|||+||.|++.+.+..|++||||||||||||+|+|++++.++++++++
T Consensus 356 l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~GaRlTGaG~GGc~i~Lv~~~~~~~~~~~v 430 (468)
T PTZ00290 356 LSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHV 430 (468)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCcEEEEecCCCceEEEEEechhhHHHHHHHH
Confidence 567999999999999999999999999999999986543699999999999999999999999988887764
|
|
| >PRK00555 galactokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-63 Score=474.91 Aligned_cols=326 Identities=33% Similarity=0.505 Sum_probs=290.8
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+-|+|| |+|+++|+|||+ |||+++++.++|++|+++++.|.+++ ....++++. .......|.+|+++++.
T Consensus 10 Rv~LiGE-H~dy~~g~vl~~-Ai~~~~~v~~~~~~~~~i~i~s~~~~----~~~~~~~~~---~~~~~~~w~~y~~gv~~ 80 (363)
T PRK00555 10 RINLIGE-HTDYNLGFALPI-ALPQRTVVTFTPEHTDAITASSDRAD----GSARIPLDT---TPGQVTGWAAYAAGVIW 80 (363)
T ss_pred eEEeecc-cccCCCCeEEeE-EeeccEEEEEEECCCCEEEEEECCCC----CceEEecCC---CCCCCcchHHHHHHHHH
Confidence 4557788 678889999999 99999999999999999999998752 234444431 12234679999999999
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+++.+..+.|+++.|.|+||+|+|||||||++||++.|+..+++.++ ++++++++|+++|+.++|.|||+|||++++|
T Consensus 81 ~l~~~g~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~-~~~~la~~a~~aE~~~~G~~~G~~Dq~as~~ 159 (363)
T PRK00555 81 ALRGAGHPVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRI-DRLEQARLAQRAENEYVGAPTGLLDQLAALF 159 (363)
T ss_pred HHHHcCCCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhhCCCCCChhHHHHHHh
Confidence 998888777899999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCC-CCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDD-HQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQK 245 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~-~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~ 245 (349)
||.|+++++||++..++++|++.. +++.|++++|++++.+++.+||.||.+|+.+.+.++.+.+|++..+.+... ..
T Consensus 160 G~~~~~~~~d~~~~~~~~v~~~~~~~~~~lvv~~s~~~~~~~~~~y~~rr~~~~~~~~~~~~~~lr~~~~~~~~~~--~~ 237 (363)
T PRK00555 160 GAPKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRARHRHAGGEYAARRASCERAAADLGVSSLRAVQDRGLAAL--GA 237 (363)
T ss_pred CCCCeEEEEEcCCCcEEEeccCCCcCceEEEEEcCCCcccccchhhHHHHHHHHHHHHHhCccchhcCCHHHHHHH--Hh
Confidence 999999999998888888887642 346799999999999999999999999999999998888998887766655 33
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCc
Q psy9976 246 LLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGF 325 (349)
Q Consensus 246 ~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~ 325 (349)
..++..++|+.|+++|++|+.+++++|+++|++.||++|+++|.++|+.+++|+|++|.|++.+++ .|++|+|+|||||
T Consensus 238 ~~~~~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~-~Ga~GaklsGaG~ 316 (363)
T PRK00555 238 IADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIADSAVR-AGALGARMTGGGF 316 (363)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHh-cCCeEEEECCCCc
Confidence 346678899999999999999999999999999999999999999998899999999999999999 7999999999999
Q ss_pred cceeEEEeCCCchhhhhhhc
Q psy9976 326 GGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 326 GG~~i~l~~~~~~~~~~~~~ 345 (349)
|||+++|++.+.++++.+.+
T Consensus 317 Gg~vial~~~~~~~~~~~~l 336 (363)
T PRK00555 317 GGCVIALVPADRAEDVADTV 336 (363)
T ss_pred cCeEEEEEchhHHHHHHHHH
Confidence 99999999998887776653
|
|
| >PRK05101 galactokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-63 Score=476.98 Aligned_cols=325 Identities=35% Similarity=0.554 Sum_probs=291.7
Q ss_pred hhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccC-CCCCcCHhHHHHHHHHH
Q psy9976 9 YLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKL-TPGAPKWANYVKGVVSI 87 (349)
Q Consensus 9 ~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l-~~~~~~w~~~v~~~~~~ 87 (349)
-|+||. .|++||.|||+ |||+++++.+++++++.+++.+.++. .....|+++. ++ ......|.||+++++..
T Consensus 30 nL~GeH-~Dy~gg~vL~~-AId~~~~v~i~~~~~~~i~v~s~~~~---~~~~~~~~~~--~~~~~~~~~w~~yv~~~~~~ 102 (382)
T PRK05101 30 NLIGEH-TDYNDGFVLPC-AIDYQTVISCAKRDDRIVRVIAADYD---NQQDEFSLDA--PIVPHPEQQWANYVRGVVKH 102 (382)
T ss_pred EEeccc-eeecCCEEEEE-EecccEEEEEEECCCCEEEEEECCCC---CCceEEecCc--ccccCCCCchHHHHHHHHHH
Confidence 356775 45999999999 99999999999999999999998752 1233455543 12 22356899999999999
Q ss_pred HHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhc
Q psy9976 88 FNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMG 167 (349)
Q Consensus 88 l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~g 167 (349)
+.+.+....||++.|.|+||+|+|||||||++||++.|++.+++.++ ++++++++|+++|+.++|.|||+|||+++++|
T Consensus 103 l~~~~~~~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l-~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G 181 (382)
T PRK05101 103 LQERNPDFGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPL-SGAEIALNGQEAENQFVGCNCGIMDQLISALG 181 (382)
T ss_pred HHHhCCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHHcC
Confidence 98776666799999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccC
Q psy9976 168 EEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLL 247 (349)
Q Consensus 168 g~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l 247 (349)
+.++++++|+++.+++++|+| +++.|+|++|++++++.+..||.||+||+.|.+.++.+.+++++.+++... +..+
T Consensus 182 ~~~~~~~~d~~~~~~~~~~~~--~~~~~vv~~sg~~~~l~~~~y~~r~~e~~~A~~~l~~~~l~~~~~~~~~~~--~~~l 257 (382)
T PRK05101 182 KKDHALLIDCRSLETKAVPMP--EGVAVVIINSNVKRGLVDSEYNTRRQQCETAARFFGVKALRDVTLEQFNAV--AAEL 257 (382)
T ss_pred CCCeEEEEEcCCCceEEeeCC--CCcEEEEEeCCCCccccccchhHHHHHHHHHHHHhChHhhhcCCHHHHHHH--HhhC
Confidence 999999999999888898887 488999999999999888999999999999999999999999988877665 4567
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCC-eEEEecccCcc
Q psy9976 248 SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGV-LGCRMTGGGFG 326 (349)
Q Consensus 248 ~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga-~gakltGaG~G 326 (349)
++..++|+.|+++|++||.++++||+++|+..||++|+++|.+||+.|++|||++|.|++.|++..|+ +||||||||||
T Consensus 258 ~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga~gGakltGaG~G 337 (382)
T PRK05101 258 DPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFG 337 (382)
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCCcceEEeccCCCc
Confidence 88999999999999999999999999999999999999999999988999999999999999994497 58899999999
Q ss_pred ceeEEEeCCCchhhhhhhc
Q psy9976 327 GCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~~~~~~~~~~ 345 (349)
||+++|++++.++++++..
T Consensus 338 G~~ial~~~~~~~~~~~~~ 356 (382)
T PRK05101 338 GCIVALVPEELVEAVRQAV 356 (382)
T ss_pred cEEEEEEcHHHHHHHHHHH
Confidence 9999999999998887654
|
|
| >PRK05322 galactokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=475.59 Aligned_cols=328 Identities=36% Similarity=0.577 Sum_probs=290.2
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCC-CCCcCHhHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLT-PGAPKWANYVKGVV 85 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~-~~~~~w~~~v~~~~ 85 (349)
|+-|+|| |.|++||+|||+ |||+++++++++++|+++++.|.++.. .....|++++ +. .....|.+|+++++
T Consensus 27 Rv~L~GE-H~d~~g~~vl~~-AI~~~~~v~~~~~~~~~i~i~s~~~~~--~~~~~~~~~~---~~~~~~~~w~~y~~gvi 99 (387)
T PRK05322 27 RINLIGE-HTDYNGGHVFPA-AITLGTYGAARKRDDKKVRLYSANFED--LGIIEFDLDD---LSFDKEDDWANYPKGVL 99 (387)
T ss_pred eeEeccc-ceeecCceeeee-eccceEEEEEEECCCCEEEEEECCCCC--CceEEEeccc---cCCCCccchHHHHHHHH
Confidence 4556777 567799999999 999999999999999999999987521 1134455442 22 23467999999999
Q ss_pred HHHHhcCCCC-CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q psy9976 86 SIFNDRVAPV-PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVS 164 (349)
Q Consensus 86 ~~l~~~~~~~-~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~ 164 (349)
..+.+.+..+ .||++.|.|+||+|+|||||||++||++.|++++++.++ ++++++++|+.+|+.++|.|||+|||+++
T Consensus 100 ~~l~~~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l-~~~~la~~a~~~E~~~~G~~sG~mDq~as 178 (387)
T PRK05322 100 KFLQEAGYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDL-DRLELVKLGQKTENEFIGVNSGIMDQFAI 178 (387)
T ss_pred HHHHHcCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhccCCCCcchHHHHHH
Confidence 9998777644 799999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhch----hccCCCCHHHHHH
Q psy9976 165 VMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHR----VSFRDVSLKSLED 240 (349)
Q Consensus 165 ~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~----~~l~~~~~~~~~~ 240 (349)
++||.++++++||++++++.+|++. +++.|+|++|++++++.+..||.||.||+++++.+++ ..+++++.+++..
T Consensus 179 ~~G~~~~~~~~d~~~~~~~~~~~~~-~~~~lvv~dsg~~~~~~~~~yn~r~~e~~~a~~~l~~~~~~~~l~~~~~~~~~~ 257 (387)
T PRK05322 179 GMGKKDHAILLDCNTLEYEYVPLDL-GDYVIVIMNTNKRRELADSKYNERRAECEKALEELQKKLDIKSLGELTEEEFDE 257 (387)
T ss_pred HhccCCeEEEEecCCCceEEeccCC-CCeEEEEEECCCccccCcchhhHHHHHHHHHHHHHhhhcCccchhcCCHHHHHH
Confidence 9999999999999998888988875 5788999999999999999999999999999999864 5688888887776
Q ss_pred HHhcccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEE
Q psy9976 241 KHAQKLL-SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319 (349)
Q Consensus 241 ~~~~~~l-~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gak 319 (349)
+ +..+ ++..++|+.|++.|+.|+..++.||+++|++.||++|+++|.+|++.|++|+|++|.|++.+++.+|++|+|
T Consensus 258 ~--~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~~Ga~gar 335 (387)
T PRK05322 258 Y--SYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGAR 335 (387)
T ss_pred H--HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhcCCccEEE
Confidence 5 4445 378889999999999999999999999999999999999999999999999999999999997436999999
Q ss_pred ecccCccceeEEEeCCCchhhhhhhc
Q psy9976 320 MTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 320 ltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
|||||+|||+++|++.+..+++.+++
T Consensus 336 lsGaG~GG~vial~~~~~~~~~~~~l 361 (387)
T PRK05322 336 MTGAGFGGCAIAIVKKDKVEAFKENV 361 (387)
T ss_pred EecCCCceEEEEEEcHHHHHHHHHHH
Confidence 99999999999999999888776553
|
|
| >PLN02521 galactokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=475.65 Aligned_cols=327 Identities=28% Similarity=0.385 Sum_probs=276.0
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCC-CeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHH----
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNS-NQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYV---- 81 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d-~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v---- 81 (349)
|+.|+|| |+|++||+|||+ |||++++++++++++ +.+++.+.+.. .....|+++...........|.||+
T Consensus 56 RVnLiGE-HtDy~gg~vLp~-AI~~~~~v~~~~~~~~~~i~i~s~~~~---~~~~~~~~~~~~~~~~~~~~W~nYv~~~~ 130 (497)
T PLN02521 56 RVNLIGE-HIDYEGYSVLPM-AIRQDTIVAIRRAEGSKKLRIANVNDK---YTTCTFPADPDQEVDLANHKWGNYFICGY 130 (497)
T ss_pred eEEEecc-ceeecCCeEEEE-EEcCcEEEEEEEcCCCCEEEEEECCCC---CCceeeecCcccccccccccHHHHHHHHH
Confidence 4557787 789999999999 999999999999987 88999987642 1233444432111112345799999
Q ss_pred HHHHHHHHhcCCC---CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy9976 82 KGVVSIFNDRVAP---VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGI 158 (349)
Q Consensus 82 ~~~~~~l~~~~~~---~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~ 158 (349)
++++..+.+.+.. ..||++.|.|+||+|+|||||||++||++.++.++++.++ ++++++++|+++|+ +.|.+||+
T Consensus 131 ~gv~~~l~~~~~~~~~~~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l-~~~~la~la~~~E~-~~g~~~g~ 208 (497)
T PLN02521 131 KGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNF-TKKEVAQFTCKCER-HIGTQSGG 208 (497)
T ss_pred HHHHHHHHHhccccCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhC-ccCCCCCh
Confidence 8999988876653 3499999999999999999999999999999999999999 99999999999999 68999999
Q ss_pred hHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcc---cChhhHHHHHHHHHHHHHHhc---------
Q psy9976 159 MDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHE---LSSSEYAVRRAQCKSVLDKLH--------- 226 (349)
Q Consensus 159 ~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~---~~~~~y~~r~~~~~~a~~~l~--------- 226 (349)
|||+++++|++|+++++||+++.++++|+|. ++.|+|++|++++. +.++.||.||.||+.|+++|+
T Consensus 209 mDq~as~~g~~g~al~~d~~~l~~~~v~~p~--~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~ 286 (497)
T PLN02521 209 MDQAISIMAQQGVAKLIDFNPVRATDVQLPA--GGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEE 286 (497)
T ss_pred HHHHHHHhcCCCcEEEEecCCCceEEeecCC--CcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchh
Confidence 9999999999999999999999999999874 88999999996655 777899999999999999996
Q ss_pred ----hhccCCCC-----------------------------HHHHHHHHhcc-cC------------------CHHHHHH
Q psy9976 227 ----RVSFRDVS-----------------------------LKSLEDKHAQK-LL------------------SDEEYKR 254 (349)
Q Consensus 227 ----~~~l~~~~-----------------------------~~~~~~~~~~~-~l------------------~~~~~~r 254 (349)
..+||++. .+++.+. +. .+ ...+++|
T Consensus 287 ~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R 364 (497)
T PLN02521 287 AISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEI--LGESLTSIFKNSPTSLAVLKAAKHFKLHQR 364 (497)
T ss_pred cccccCCHHHHHHHHhhhcccccchhhHHHhhhhhccccCCHHHHHHH--hCCcHHHHhhccccccccccccchhHHhhh
Confidence 33455541 1233222 11 01 1367899
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcccee
Q psy9976 255 GHHVVTEIDRTYKGANALKEG-----DFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCA 329 (349)
Q Consensus 255 ~~~~i~e~~rv~~~~~al~~~-----d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~ 329 (349)
+.|+++|+.||.+++++|+++ ++..||++|++||.++|++|++|||++|.|++.+++ .|++|+||||||||||+
T Consensus 365 a~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~-~Ga~GaRltGaG~GG~~ 443 (497)
T PLN02521 365 AVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRD-NGALGARLTGAGWGGCA 443 (497)
T ss_pred hhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHh-cCCcEEEECCCCCCeEE
Confidence 999999999999999999886 399999999999999999999999999999999999 69999999999999999
Q ss_pred EEEeCCCchhhhhhhc
Q psy9976 330 IALVSPLNLRRGRKKK 345 (349)
Q Consensus 330 i~l~~~~~~~~~~~~~ 345 (349)
++|++++.++++++++
T Consensus 444 i~lv~~~~~~~~~~~l 459 (497)
T PLN02521 444 VALVKEAIVPQFILAL 459 (497)
T ss_pred EEEECHHHHHHHHHHH
Confidence 9999999888877664
|
|
| >TIGR00131 gal_kin galactokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-60 Score=460.92 Aligned_cols=329 Identities=33% Similarity=0.496 Sum_probs=286.1
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCC-CCcCHhHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTP-GAPKWANYVKGVV 85 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~-~~~~w~~~v~~~~ 85 (349)
|+-++||. .|++||.||++ |||+++++.+++++++++++.+.+++ ....+++++. +..+ ....|.+|+++++
T Consensus 25 rv~L~GeH-~dy~g~~vl~~-AI~~~~~v~~~~~~~~~i~i~~~~~~---~~~~~~~~~~--~~~~~~~~~w~~y~~~~~ 97 (386)
T TIGR00131 25 RVNLIGEH-TDYNDGSVLPC-AIDFGTLCAVAVRDDKNVRIYLANAD---NKFAERSLDL--PLDGSEVSDWANYFKGVL 97 (386)
T ss_pred ceEeeccc-eeeCCceEEee-EeeccEEEEEEECCCCeEEEEECCCC---CcceEEECCC--CCCCCCCCCcHhHHHHHH
Confidence 44567885 55899999999 99999999999999999999998752 1123344331 1222 2468999999999
Q ss_pred HHHHhcCCCC-CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q psy9976 86 SIFNDRVAPV-PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVS 164 (349)
Q Consensus 86 ~~l~~~~~~~-~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~ 164 (349)
..+.+.+... .||++.|.|+||+|+|||||||++||++.|++.+++.++ ++++++++++.+|+.++|.|||+|||+++
T Consensus 98 ~~~~~~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~-~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s 176 (386)
T TIGR00131 98 HVAQERFNSFPLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPL-DSKQILLRIQVAENHFVGVNCGIMDQAAS 176 (386)
T ss_pred HHHHHhcCCCCCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCccCCCcchHHHHHH
Confidence 9988766543 599999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchh---ccCCCCHHHHHHH
Q psy9976 165 VMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRV---SFRDVSLKSLEDK 241 (349)
Q Consensus 165 ~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~---~l~~~~~~~~~~~ 241 (349)
++||.|+++++||++.+++++|+|. .++.|+|++|+++++|.+..||.||.||+.|++.++.+ .+|++.++++...
T Consensus 177 ~~G~~~~~l~~~~~~~~~~~~~~~~-~~~~lvv~~s~~~~~t~~~~y~~r~~e~~~a~~~l~~~~~~~lr~~~~~~~~~~ 255 (386)
T TIGR00131 177 VLGKEDHALLVECRSLKATPFKFPQ-LGIAFVIANTNVKRTLAPSNYNTRRQECTTAANFLAATDKGALRDFMNEYFARY 255 (386)
T ss_pred HhccCCcEEEEEcCCCceeeecCCC-CCeEEEEEeCCCccccccchhHHHHHHHHHHHHHhccccccchhhCCHHHHhhh
Confidence 9999999999999988888888763 37899999999999998899999999999999999876 8888887776531
Q ss_pred Hh-cccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHH-HcCCCCeEEE
Q psy9976 242 HA-QKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCA-QSLPGVLGCR 319 (349)
Q Consensus 242 ~~-~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a-~~~~Ga~gak 319 (349)
.. ...+.+...+|+.|+++|+.||.+++++|+++|++.||++|+++|.+|++.|++|||++|.+++.+ ++ +||+|||
T Consensus 256 ~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~-~GAlGak 334 (386)
T TIGR00131 256 IARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDYECTCPEIDELVCSAALV-NGSGGSR 334 (386)
T ss_pred HhhHhhcCHHHHhhHheeehHHHHHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhc-CCCcEEE
Confidence 00 234566778899999999999999999999999999999999999999998999999999999886 55 7999999
Q ss_pred ecccCccceeEEEeCCCchhhhhhhc
Q psy9976 320 MTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 320 ltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
|||||||||+++|++++.++++++.+
T Consensus 335 ltGaG~GG~vial~~~~~~~~v~~~~ 360 (386)
T TIGR00131 335 MTGAGFGGCTVHLVPNENVDKVRQAV 360 (386)
T ss_pred EecCCCceEEEEEEcHHHHHHHHHHH
Confidence 99999999999999999888887764
|
The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity. |
| >PRK03817 galactokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=414.88 Aligned_cols=316 Identities=36% Similarity=0.565 Sum_probs=281.7
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+.++||+.. +++|+||++ |||+++++.++++ +.+++.+.+++ ....|++++ + ....+|.+|+++++.
T Consensus 8 rv~L~Geh~d-~~~g~~l~~-aI~~~~~v~~~~~--~~~~i~~~~~~----~~~~~~~~~---~-~~~~~~~~~~~~~~~ 75 (351)
T PRK03817 8 RVNLIGEHTD-YNDGYVLPF-AINLYTFLEIEKS--EKFIFYSENFN----EEKTFELDK---L-EKLNSWADYIKGVIW 75 (351)
T ss_pred eEEEecccee-eCCCeEEEE-EecCcEEEEEEeC--CeEEEEECCCC----CcEEEeCCc---c-CCCCchHHHHHHHHH
Confidence 6788999865 799999999 9999999998775 56888888752 235566542 2 234689999999999
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+.+.+....||++.|.|+||+++|||||||++||++.+++++++.++ ++++++++|.++|+.++|.|+|+|||+++++
T Consensus 76 ~~~~~~~~~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~-~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~ 154 (351)
T PRK03817 76 VLEKRGYEVGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNL-SKLELALLAREAENEFVGVPCGIMDQFAVAF 154 (351)
T ss_pred HHHHcCCCCCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHhcccccCCCCcCchhhheee
Confidence 998777767899999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
|+.++++++|+.+..+.++|+|. ++++++++|+.++.+.+..||+||.+|+++++.++..++++++.+++..
T Consensus 155 g~~~~~~~~~~~~~~~~~~~~~~--~~~~vv~~sg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------ 226 (351)
T PRK03817 155 GKKDHAIFLDTMTLEYEYVPFPE--DYEILVFDTGVKRELASSEYNERRQECEEALKILGKKSSKEVTEEDLSK------ 226 (351)
T ss_pred ccCCEEEEEecCCCceEEEecCC--CcEEEEEeCCCccccccchhHHHHHHHHHHHHHhCccchhcCCHHHHHh------
Confidence 99888999999887788888874 8999999999988887789999999999999999988888877665432
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 247 LSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 247 l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
+++..++|+.|++.|++|+.+++.+|+++|++.||++|+++|.++++.|++++|++|.|++.+++ .|++|+|+||||||
T Consensus 227 l~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~-~GalGaklsGaG~G 305 (351)
T PRK03817 227 LPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYEVSCEELDFFVEFALE-LGAYGARLTGAGFG 305 (351)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH-cCCCEEEEecCCCC
Confidence 47778899999999999999999999999999999999999999998899999999999999999 69999999999999
Q ss_pred ceeEEEeCCCchhhhhhh
Q psy9976 327 GCAIALVSPLNLRRGRKK 344 (349)
Q Consensus 327 G~~i~l~~~~~~~~~~~~ 344 (349)
||+++|++++.++++++.
T Consensus 306 g~vlal~~~~~~~~~~~~ 323 (351)
T PRK03817 306 GSAIALVDKGKFESIGEE 323 (351)
T ss_pred eEEEEEEchHHHHHHHHH
Confidence 999999999887776554
|
|
| >TIGR00549 mevalon_kin mevalonate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=336.16 Aligned_cols=270 Identities=25% Similarity=0.328 Sum_probs=211.6
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|++|+|||.+.+ ||+||++ |||+++++.+++++++ +++.+..+.. . .. ........|.+|+++++.
T Consensus 4 kv~L~GEH~v~~-g~~al~~-aI~~~~~~~~~~~~~~-~~i~~~~~~~----~----~~---~~~~~~~~~~~~v~~~l~ 69 (273)
T TIGR00549 4 KIILFGEHAVVY-GEPAIAA-PIPLRTTVTVIESSDG-SFIESDLGRG----S----LD---DAPQELDGLVSYIAEALS 69 (273)
T ss_pred eEEEEecChhcc-CCCeeEE-EecccEEEEEEEcCCC-ceEeccccCC----c----Hh---HhhHHHHHHHHHHHHHHH
Confidence 789999998876 9999999 9999999999888776 6777665410 0 01 011123579999999999
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+.+.+ ..++++.+.|+||+|+|||||||++||++.|++++++.++ ++++++++|+.+|+.++|.|||. ||++++|
T Consensus 70 ~~~~~~--~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~-~~~~l~~~a~~~E~~~~G~~sG~-D~~~~~~ 145 (273)
T TIGR00549 70 YFSELN--PPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSEL-SKEELAKLANEAEKIAHGKPSGI-DTATSTY 145 (273)
T ss_pred HhhccC--CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCCchH-hHHHHhc
Confidence 887432 2359999999999999999999999999999999999999 99999999999999999999997 9999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
|| +++++.... ...++.+ +++.+++++|+.+++|.. .+ +.+.. .++.
T Consensus 146 Gg---~~~~~~~~~-~~~~~~~--~~~~lvl~~tg~~~~T~~-~~-----------~~v~~--~~~~------------- 192 (273)
T TIGR00549 146 GG---PVYFEKGEG-EFTKLIS--LDGYFVIADTGVSGSTKE-AV-----------ARVRQ--LLER------------- 192 (273)
T ss_pred CC---eEEEEcCCC-ceeeccC--CCeEEEEEECCCCCcHHH-HH-----------HHHHH--HHHh-------------
Confidence 98 677775543 2333333 368899999999987642 11 11110 0000
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 247 LSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 247 l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
.++..++....+.+ ++.+++++|+++|++.||++|+++|..+++ +++++|++|+|++.+++ .|++|+||||||+|
T Consensus 193 -~~~~~~~~~~~~~~--~~~~~~~al~~~d~~~lg~l~~~~~~~l~~-~~vs~p~l~~l~~~~~~-~Ga~gaklsGaG~G 267 (273)
T TIGR00549 193 -FPELIDSIMDAIGE--LTLEAKAALQDGDVESLGELMNINQGLLKA-LGVSHPKLDQLVETARK-AGALGAKLTGAGGG 267 (273)
T ss_pred -CHHHHHHHHHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHH-CCCceeeeccCCCC
Confidence 11111122222222 488999999999999999999999998876 79999999999999999 69999999999999
Q ss_pred ceeEEE
Q psy9976 327 GCAIAL 332 (349)
Q Consensus 327 G~~i~l 332 (349)
||+|+|
T Consensus 268 G~~i~l 273 (273)
T TIGR00549 268 GCMIAL 273 (273)
T ss_pred ceEEeC
Confidence 999986
|
Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped. |
| >TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=337.16 Aligned_cols=295 Identities=17% Similarity=0.211 Sum_probs=228.7
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccC---CCCCcCHhHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKL---TPGAPKWANYVKG 83 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l---~~~~~~w~~~v~~ 83 (349)
|++|+|||.+.+.|..+|++ |||+++++.++++++..+++.|.++. .....|..+.. .+ .+...+|.+|+++
T Consensus 8 Kl~L~GEhavv~~G~pAl~~-aI~~~~~v~i~~~~~~~~~i~s~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~ 82 (358)
T TIGR01220 8 KLFVAGEYAVVEPGNPAILV-AVDRFVTVTVEDADGAADVIISSDLG---PQPVGWRRHDG-RLVVRDPDARSALAYVVS 82 (358)
T ss_pred eEEEeeeEEEecCCCeEEEE-EEcCcEEEEEEeCCCCceEEEecCCC---CCceEEEecCC-ceeecccccccchHHHHH
Confidence 78999999999888889999 99999999999999888899888763 22344443321 11 1123479999999
Q ss_pred HHHHH----HhcCCCCCceEEEEEeCCCCC----CCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCC
Q psy9976 84 VVSIF----NDRVAPVPGFNAVILSSVPMG----SGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVP 155 (349)
Q Consensus 84 ~~~~l----~~~~~~~~g~~i~i~s~iP~g----~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~ 155 (349)
++..+ ...+...+||++.|.|++|++ +|||||||++||++.|+..+++.++ ++++++++|+.+|+.++|.+
T Consensus 83 ~i~~~~~~~~~~~~~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l-~~~~l~~lA~~~E~~~~g~~ 161 (358)
T TIGR01220 83 AIETVERYAGERNQKLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLEL-SNDEIFKLAMLATAELQPKG 161 (358)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhhhCCCC
Confidence 98765 334556679999999999994 6999999999999999999999999 99999999999999999998
Q ss_pred ChhhHHHHHHhccCCeEEEEe-cC----------------------CCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHH
Q psy9976 156 CGIMDQYVSVMGEEGSALLID-CK----------------------THEARHIPLGDDHQYVFLIINSNVHHELSSSEYA 212 (349)
Q Consensus 156 ~G~~D~~a~~~gg~~~~~~~d-~~----------------------~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~ 212 (349)
+|. |+++++||| ++++. +. +..+++++++ ++++++|++|+.+++|...
T Consensus 162 sg~-D~~a~~~GG---~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~--~~~~l~v~~tg~~~~T~~~--- 232 (358)
T TIGR01220 162 SCG-DIAASTYGG---WIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAP--KGLTLLIGWTGSPASTASL--- 232 (358)
T ss_pred Ccc-hhhhhhhCC---EEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCC--CCCEEEEEeCCCCcCcHHH---
Confidence 887 999999999 55553 32 1235666665 4789999999999886421
Q ss_pred HHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q psy9976 213 VRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLR 292 (349)
Q Consensus 213 ~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr 292 (349)
++.+. +. +.. .++.+++..+.+.+. +.+++++|+++|++.||++|+++|..|+
T Consensus 233 ---------v~~V~-------------~~--~~~-~~~~~~~~l~~~~~i--~~~~~~al~~~d~~~lg~~~~~~~~lL~ 285 (358)
T TIGR01220 233 ---------VSDVH-------------RR--KWR-GSASYQRFLETSTDC--VESAITAFETGDITSLQKEIRRNRQELA 285 (358)
T ss_pred ---------HHHHH-------------HH--hhc-ChHHHHHHHHHHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 11110 00 000 112233333334444 8899999999999999999999999998
Q ss_pred cc-----cCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCC-chhhhhhhc
Q psy9976 293 DD-----YEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPL-NLRRGRKKK 345 (349)
Q Consensus 293 ~~-----~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~-~~~~~~~~~ 345 (349)
.. .++|+|+++.|++.+++ .|+ |||+||||+|||+|+|++++ ..+++..++
T Consensus 286 ~l~~~~~~~vs~~~l~~li~~a~~-~ga-~aKlsGAGgGg~~ial~~~~~~~~~~~~~~ 342 (358)
T TIGR01220 286 RLDDEVGVGIETEKLKALCDAAEA-YGG-AAKPSGAGGGDCGIAILDAEADITHVRQRW 342 (358)
T ss_pred HhhcccCCCcCCHHHHHHHHHHhh-cCc-eecCCCCCCcCEEEEEeCCchhHHHHHHHH
Confidence 73 48999999999999999 697 99999999999999999764 455565543
|
This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase. |
| >COG1577 ERG12 Mevalonate kinase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=325.81 Aligned_cols=274 Identities=25% Similarity=0.332 Sum_probs=220.2
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+|++|||+|++ |..++.+ |||++.++.++..++..+.+.+.++.. . .++. .+.. .|+..++.
T Consensus 8 KliL~GEHAVVy-G~pAI~~-aI~~~~~v~~~~s~~~~~~i~~~~~~~----~---~~~~------~~~~--~~~~~~v~ 70 (307)
T COG1577 8 KLILFGEHAVVY-GYPAIAA-AIDLRVTVTISESDSNKIVIESSDLKS----S---TLER------DEDE--GYIQAAVR 70 (307)
T ss_pred cEEEEecceeee-CCchhhe-eeeeeEEEEEEecCCCcEEEeccCCCC----c---cccc------cccc--hHHHHHHH
Confidence 899999999999 7789999 999999999999888899999987531 1 1111 0111 57777777
Q ss_pred HHHhcCC--CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q psy9976 87 IFNDRVA--PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVS 164 (349)
Q Consensus 87 ~l~~~~~--~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~ 164 (349)
.+.+... +..||+++|.|+||+|+|||||||+.||++.|++.+++.++ +++++++++.++|..++|+|||+ |.+++
T Consensus 71 ~~~e~~~~~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~l-s~~~l~~la~~~e~~vqG~~Sg~-D~a~~ 148 (307)
T COG1577 71 LASELLNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVEL-SPEELAKLANKVELIVQGKASGI-DIATI 148 (307)
T ss_pred HHHHHhcccCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHcCCCCcc-cceEE
Confidence 6655433 56799999999999999999999999999999999999999 99999999999999999999998 99999
Q ss_pred HhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhc
Q psy9976 165 VMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQ 244 (349)
Q Consensus 165 ~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~ 244 (349)
+||| +++|... ..++++.++. .. .|+|.+++.+.+|... -+ .+.+++.
T Consensus 149 ~~gg---~v~~~~~-~~~~~l~~~~-~~-~~~I~~tg~~~sT~e~-V~-------~V~~l~~------------------ 196 (307)
T COG1577 149 TYGG---LVAFKKG-FDFEKLEIEL-LG-TLVIGDTGVPGSTKEL-VA-------GVAKLLE------------------ 196 (307)
T ss_pred EeCC---EEEEecC-CCcccccccc-CC-eEEEEEcCCcCcHHHH-HH-------HHHHHHH------------------
Confidence 9999 7777632 3456666655 23 6899999999887411 10 1111110
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccC
Q psy9976 245 KLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGG 324 (349)
Q Consensus 245 ~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG 324 (349)
. .++.+....+.+.+. +.++..+++++|.+.||++|+.+|..|.. .++|+|++|+|++.+++ .|+.|||+||||
T Consensus 197 -~-~~~~~~~~~~~ig~~--~~~a~~al~~~d~e~lgelm~~nq~LL~~-LgVs~~~L~~lv~~a~~-~Ga~gaKlTGAG 270 (307)
T COG1577 197 -E-EPEVIDPILDAIGEL--VQEAEAALQTGDFEELGELMNINQGLLKA-LGVSTPELDELVEAARS-LGALGAKLTGAG 270 (307)
T ss_pred -h-hhHHHHHHHHHHHHH--HHHHHHHHhcccHHHHHHHHHHHHHHHHh-cCcCcHHHHHHHHHHHh-cCccccccccCC
Confidence 0 122234445555544 89999999999999999999999999976 88999999999999999 699999999999
Q ss_pred ccceeEEEeCCCc
Q psy9976 325 FGGCAIALVSPLN 337 (349)
Q Consensus 325 ~GG~~i~l~~~~~ 337 (349)
+|||+|+|+++.+
T Consensus 271 gGGc~IaL~~~~~ 283 (307)
T COG1577 271 GGGCIIALAKNEE 283 (307)
T ss_pred CCceEEEEeccch
Confidence 9999999999633
|
|
| >PLN02677 mevalonate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=325.95 Aligned_cols=293 Identities=20% Similarity=0.267 Sum_probs=208.6
Q ss_pred HHHhhhhhceeeeCCcEEEecccccceEEEEEEecC----CCeEEEEecCCCCCCCCceEEeCCCcc-cCC----CC-Cc
Q psy9976 6 QRLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNN----SNQIHLHSDSARADKPTDISFDIPKVQ-KLT----PG-AP 75 (349)
Q Consensus 6 ~~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~----d~~i~v~s~~~~~~~~~~~~~~l~~~~-~l~----~~-~~ 75 (349)
-|+||+|||++.+ ||.+|++ |||+++++.+++++ .+.|.+...+. ....+|+.+... ... +. ..
T Consensus 9 gk~~l~Geh~~~~-g~~a~~~-ai~~~~~~~~~~~~~~~~~~~i~~~~~di----~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (387)
T PLN02677 9 GKIILAGEHAVVH-GSTAVAA-AIDLYTYVSLRFPPSAENDDTLKLQLKDL----GLEFSWPLARIKEALPDLGTPCPST 82 (387)
T ss_pred ccEEEeeeeeeec-CCeeeee-EeeceEEEEEEecCCCCCCCeEEEEcCCC----CceEEechHhhhhhhcccccccccc
Confidence 4899999999988 9999999 99999999998753 34555444332 122333332110 000 00 11
Q ss_pred CHh---HHHHHHHHHHHhcCCC----------------------CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhh
Q psy9976 76 KWA---NYVKGVVSIFNDRVAP----------------------VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESIT 130 (349)
Q Consensus 76 ~w~---~~v~~~~~~l~~~~~~----------------------~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~ 130 (349)
.|. ..+..+..++.+.+.+ ..++++.|.|+||+|+|||||||++||++.||..++
T Consensus 83 ~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~~ 162 (387)
T PLN02677 83 PTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFCVALSAALLAAS 162 (387)
T ss_pred ccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHHh
Confidence 221 1222222333322222 458999999999999999999999999999999999
Q ss_pred CC-CC------------CCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEE
Q psy9976 131 DE-KT------------LKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLI 197 (349)
Q Consensus 131 ~~-~~------------~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll 197 (349)
+. +. .+.++++++|+.+|+.++|.|||+ |+++++||| ++.|+ +..+++++.+ ++++++|
T Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D~a~s~~Gg---~I~f~--~~~~~~l~~~--~~l~llv 234 (387)
T PLN02677 163 DSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-DNTVSTYGN---MIKFK--SGELTRLQSN--MPLKMLI 234 (387)
T ss_pred CCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-hHHHHhcCC---eEEEc--CCCceecCCC--CCceEEE
Confidence 83 21 033688899999999999999999 999999998 55554 4455666654 4789999
Q ss_pred EeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhc---
Q psy9976 198 INSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKE--- 274 (349)
Q Consensus 198 ~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~--- 274 (349)
+||+++++|... ++.+. +. +.. .+..++.....+.++ +.++.++|++
T Consensus 235 ~dTgv~~sT~~l------------V~~V~-------------~~--~~~-~p~~~~~il~~~~~i--~~~a~~al~~~~~ 284 (387)
T PLN02677 235 TNTRVGRNTKAL------------VAGVS-------------ER--ALR-HPDAMKSVFNAVDSI--SEELATIIQSPAE 284 (387)
T ss_pred EECCCCCcHHHH------------HHHHH-------------HH--HHh-CHHHHHHHHHHHHHH--HHHHHHHHhcccc
Confidence 999999997521 11111 00 000 233344445555555 8899999987
Q ss_pred ------CCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCC----chhhhhhh
Q psy9976 275 ------GDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPL----NLRRGRKK 344 (349)
Q Consensus 275 ------~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~----~~~~~~~~ 344 (349)
+|+..||++|+.+|..|+. +++|+|.|+.+++.+++ .| ++||+||||+|||+|+|++++ .++++..+
T Consensus 285 ~~~~~~~~~~~Lg~lm~~N~~LL~~-LGVS~~~le~iv~~a~~-~~-~~AKlTGAGgGGC~IaL~~~~~~~~~~~~l~~~ 361 (387)
T PLN02677 285 DELSITEKEEKLKELMEMNQGLLQC-MGVSHSSIETVLRTTLK-YK-LVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIAE 361 (387)
T ss_pred ccccccchHHHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHH-cC-CccccccCCCCCEEEEEcccccchhHHHHHHHH
Confidence 5699999999999999986 89999999999999999 46 799999999999999999852 34445544
Q ss_pred c
Q psy9976 345 K 345 (349)
Q Consensus 345 ~ 345 (349)
+
T Consensus 362 l 362 (387)
T PLN02677 362 L 362 (387)
T ss_pred H
Confidence 3
|
|
| >KOG0631|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=323.40 Aligned_cols=328 Identities=29% Similarity=0.403 Sum_probs=256.5
Q ss_pred hhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCC-cccCCCCCcCHhHHH----HHH
Q psy9976 10 LLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPK-VQKLTPGAPKWANYV----KGV 84 (349)
Q Consensus 10 ~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~-~~~l~~~~~~w~~~v----~~~ 84 (349)
+.|| |+|++++-|+|| |||..+.+.+.+.+|..++|..++++.+ +...+++++. ...+.++.+.|.||+ +++
T Consensus 50 LiGE-HiDy~~~sVlpm-aid~~~l~~~~~~~d~~~sl~~tN~~~~-f~~~~~~~p~~~~~I~~~~~~w~ny~~C~~~g~ 126 (489)
T KOG0631|consen 50 LIGE-HIDYCGYSVLPM-AIDVDTLIAVAPSDDGIVSLRLTNFNPD-FIYFKYPLPSIVWQIDPDVSKWENYFYCGMKGF 126 (489)
T ss_pred cccc-eeeecCceeeeE-EeeeeeEEEEEEcCCCceeEEEecCCCc-cceeeccCCchhcccCCCccchhhhhccchHHH
Confidence 4555 899999999999 9999999999999999978888877543 4566677765 124566788999999 787
Q ss_pred HHHHHhcCC-CC--CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhh-CCCC-CCHHHHHHHHHHHHHhhcCCCChhh
Q psy9976 85 VSIFNDRVA-PV--PGFNAVILSSVPMGSGLSSSAALEVATYTFLESIT-DEKT-LKLTDKALACQEAEHSFAGVPCGIM 159 (349)
Q Consensus 85 ~~~l~~~~~-~~--~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~-~~~~-~~~~~l~~~a~~~E~~~~G~~~G~~ 159 (349)
.++++.... .. -|+.+...+++|.|+||+||||++++...|...+. |.++ ..+.+++.++..+|+ +.|.++|+|
T Consensus 127 h~~~~~~~~~~~~~vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~-~~G~~~gGm 205 (489)
T KOG0631|consen 127 HEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAES-YIGLNSGGM 205 (489)
T ss_pred HHHHhccccccCCCcceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeec-ccCcCCCcH
Confidence 777743221 22 39999999999999999999999999888887776 7762 278999999998887 689999999
Q ss_pred HHHHHHhccCCeEEEEe--cCCCeeEEeeCCCCCCeEEEEEeCCCCcc---cChhhHHHHHHHHHHHHHHhchhccCCC-
Q psy9976 160 DQYVSVMGEEGSALLID--CKTHEARHIPLGDDHQYVFLIINSNVHHE---LSSSEYAVRRAQCKSVLDKLHRVSFRDV- 233 (349)
Q Consensus 160 D~~a~~~gg~~~~~~~d--~~~~~~~~l~~~~~~~~~~ll~~s~~~~~---~~~~~y~~r~~~~~~a~~~l~~~~l~~~- 233 (349)
||.++++|.+++++++| +.++....++++. .-.|++.++.+..+ +....||.|..||..+...+..+.+-+.
T Consensus 206 dq~asvl~~~~~Al~v~~~~~Pf~~~~lk~~~--~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~ 283 (489)
T KOG0631|consen 206 DQAASVLAEKGHALLVDPYFTPFRRSMLKLPD--GGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELP 283 (489)
T ss_pred HHHHHHHHhcCceEEecccCCccccccccCCC--CceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccH
Confidence 99999999999999999 4466666666653 33789999887654 4567899998777666655542111111
Q ss_pred ---------------------------------------CHHHHHHHHh-------cc--------cCCHHHHHHHHHHH
Q psy9976 234 ---------------------------------------SLKSLEDKHA-------QK--------LLSDEEYKRGHHVV 259 (349)
Q Consensus 234 ---------------------------------------~~~~~~~~~~-------~~--------~l~~~~~~r~~~~i 259 (349)
+.+++...+. +. ....+.++|+.|++
T Consensus 284 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~T~~~v~~~~~k~~~rakHv~ 363 (489)
T KOG0631|consen 284 AYILRYQLQRAWRGDIGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQSLLTLAAVDLQVKKLYQRAKHVY 363 (489)
T ss_pred HHHHhhhhhhccccccchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 1111111110 00 00126789999999
Q ss_pred HHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEe
Q psy9976 260 TEIDRTYKGANALKEGD------FETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333 (349)
Q Consensus 260 ~e~~rv~~~~~al~~~d------~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~ 333 (349)
+|..|+.++..++.+.+ +..||+|||+||.+++.+|++||||+|+|++++++ +|.+|+|+||||||||+++++
T Consensus 364 sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala-~g~~gaRlTGaGwGGc~v~lv 442 (489)
T KOG0631|consen 364 SEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALA-NGGVGARLTGAGWGGCTVALV 442 (489)
T ss_pred HHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHh-cCCccceeeccccccceeeec
Confidence 99999999999987653 56689999999999999999999999999999999 799999999999999999999
Q ss_pred CCCchhhhhhh
Q psy9976 334 SPLNLRRGRKK 344 (349)
Q Consensus 334 ~~~~~~~~~~~ 344 (349)
+.+.++.+.+.
T Consensus 443 p~d~~~~~~~~ 453 (489)
T KOG0631|consen 443 PADLVDFAVAA 453 (489)
T ss_pred cccchHHHHHh
Confidence 98877776654
|
|
| >COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=297.96 Aligned_cols=281 Identities=18% Similarity=0.234 Sum_probs=219.1
Q ss_pred eeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHH--HHhcC
Q psy9976 15 MVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSI--FNDRV 92 (349)
Q Consensus 15 ~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~--l~~~~ 92 (349)
+..++||.||++ +||+++|+.+.+..|++|+++.... ++. .+ .+.. ++. ..++.++.. +...+
T Consensus 22 y~~k~GGaVlna-tIdky~y~~i~~~~d~~I~~~~~~~--------~~v-~~--~~~~-~h~--~~~~~~l~r~~l~~~g 86 (333)
T COG2605 22 YCSKHGGAVLNA-TIDKYIYVTIEKGFDDEIRVRYDRT--------EFV-KS--YLEN-EHK--PLVVESLKRDFLEFNG 86 (333)
T ss_pred HHHhcCCEEEEe-eeeeEEEEEEccCCCceEEEecchH--------Hhh-hh--hHhh-cCc--hHHHHHHHHHHHhhcC
Confidence 467899999999 9999999999999999999884431 111 10 0000 111 255666652 33223
Q ss_pred CCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeE
Q psy9976 93 APVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSA 172 (349)
Q Consensus 93 ~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~ 172 (349)
.+ .+++...+|+|+|+|||||||++||++.|+..+-|..+ ++++|++.|..+|++.++.+.|.|||++++|||+|
T Consensus 87 ~~--~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~-~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFn-- 161 (333)
T COG2605 87 GT--PIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESL-GPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFN-- 161 (333)
T ss_pred CC--ceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHhccccccccHHHHHhCCce--
Confidence 22 29999999999999999999999999999999999999 99999999999999999999999999999999965
Q ss_pred EEEecCC---CeeEEeeCCCC----CCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcc
Q psy9976 173 LLIDCKT---HEARHIPLGDD----HQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQK 245 (349)
Q Consensus 173 ~~~d~~~---~~~~~l~~~~~----~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~ 245 (349)
+++|.+ ..++++++... -+.++++++||+++..+ +++. +++.++. +
T Consensus 162 -fMEf~~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss---------------~V~~---------dQ~~~~~--~ 214 (333)
T COG2605 162 -FMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITRQSS---------------EVIE---------DQVRNVV--D 214 (333)
T ss_pred -EEEEcCCCcEEEeecccchhHHHHHHhceEEEEeccccchh---------------HHHH---------HHHHHhh--c
Confidence 445443 44567665431 24679999999988643 2221 2222220 0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-cCCCChhHHHHHHHHHcCCCCeEEEecccC
Q psy9976 246 LLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD-YEVSCKELDDIAHCAQSLPGVLGCRMTGGG 324 (349)
Q Consensus 246 ~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-~~vs~p~ld~l~~~a~~~~Ga~gakltGaG 324 (349)
.++...++.|.+.+. +.++.++|-.+|+.+||++|+.+|+..+.. -.+|+|.+|.+++.|++ +||+|+|++|||
T Consensus 215 --~~~~~~e~~~~mk~~--A~~~~~al~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~-~GA~~gKl~GaG 289 (333)
T COG2605 215 --GDEETLEALHEMKAL--AYEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALK-NGAYGGKLSGAG 289 (333)
T ss_pred --ccHHHHHHHHHHHHH--HHHHHHHHHhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHh-cCchhceeeccC
Confidence 112234566767666 799999999999999999999999988773 58999999999999999 799999999999
Q ss_pred ccceeEEEeCCCchhhhhhhccC
Q psy9976 325 FGGCAIALVSPLNLRRGRKKKSL 347 (349)
Q Consensus 325 ~GG~~i~l~~~~~~~~~~~~~~~ 347 (349)
+||+++.+|++.+..++++.+..
T Consensus 290 ~gGFllf~~~p~k~~~l~r~l~~ 312 (333)
T COG2605 290 GGGFLLFFCDPSKRNELARALEK 312 (333)
T ss_pred CccEEEEEeCccchHHHHHHHHH
Confidence 99999999999999999887753
|
|
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=333.11 Aligned_cols=285 Identities=16% Similarity=0.179 Sum_probs=213.9
Q ss_pred eCCcEEEecccccce----EEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccC--CCCCcCHhHHHHHHHH-----
Q psy9976 18 KRLQWIIMMDVRQVV----TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKL--TPGAPKWANYVKGVVS----- 86 (349)
Q Consensus 18 ~~~G~vl~~~Ai~~~----~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l--~~~~~~w~~~v~~~~~----- 86 (349)
++||+|||+ |||++ +++.+++++|.+|++.|.++. ....++..+ .+ .....+|.+|+++++.
T Consensus 633 ynGG~VLn~-AId~~g~~pi~v~v~~~~d~~irl~S~d~~----~~~~v~~~~--~l~~~~~~~~~~~~~K~al~~~G~~ 705 (974)
T PRK13412 633 YSGGNVVNL-AIELNGQPPLQVYVKPCSEPHIVLRSIDLG----AMEVVRTNE--ELRDYKKVGSPFSIPKAALCLAGFA 705 (974)
T ss_pred cCCcEEEEE-EEeCCCCccEEEEEEECCCCeEEEEECCCC----CceEEecch--hhcccccccchHhhhhhhheecccc
Confidence 899999999 99996 999999999999999998863 122233211 12 1234579999998874
Q ss_pred ---------HHHhcCCCC-CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCC
Q psy9976 87 ---------IFNDRVAPV-PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPC 156 (349)
Q Consensus 87 ---------~l~~~~~~~-~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~ 156 (349)
.+++..... .||++.|.|+||+|+|||||||++||++.|+.++++.++ +++++++++..+|+.++|.+
T Consensus 706 ~~~~~~~~~~l~e~l~~~G~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~l-s~~ela~~A~~~E~~lhg~~- 783 (974)
T PRK13412 706 PRFSAESYASLEEQLKAFGSGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAW-DKNEICNRTLVLEQLLTTGG- 783 (974)
T ss_pred cccccchhHHHHHHHHhcCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHCCCC-
Confidence 222111111 599999999999999999999999999999999999999 99999999999998866555
Q ss_pred hhhHHHHHHhccCCeEEEEecCC-----CeeEEeeCCC----CCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhch
Q psy9976 157 GIMDQYVSVMGEEGSALLIDCKT-----HEARHIPLGD----DHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHR 227 (349)
Q Consensus 157 G~~D~~a~~~gg~~~~~~~d~~~-----~~~~~l~~~~----~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~ 227 (349)
|.|||+++++|| +.++++.+ ..++++|.+. ..+-+++|++||+++.+.. ++..
T Consensus 784 g~qDq~~a~~GG---~~~i~~~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~---------------iV~~ 845 (974)
T PRK13412 784 GWQDQYGGVLPG---VKLLQTGAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKG---------------ILAE 845 (974)
T ss_pred chhhhhhHhcCC---eEEEEecCCcccCcceeecCcchhhhhhccCcEEEEECCCeeeHHH---------------HHHH
Confidence 667999999999 67777543 1234444321 0134699999999887642 1110
Q ss_pred hccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-cCCCChhHHHHH
Q psy9976 228 VSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD-YEVSCKELDDIA 306 (349)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-~~vs~p~ld~l~ 306 (349)
.+... . ..+....+..+.+.++ +.++.+||+++|+++||++|+++|..++.. .++|+|++|.|+
T Consensus 846 ---------Vv~~~--~--~~~~~~~~~l~~ig~L--a~ea~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li 910 (974)
T PRK13412 846 ---------IVRSM--F--LNSTAHLQLLHEMKAH--ALDMYEAIQRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAII 910 (974)
T ss_pred ---------HHHHH--H--hCcHHHHHHHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 00000 0 0111223344445555 899999999999999999999999988872 499999999999
Q ss_pred HHHHcCCCCeEEEecccCccceeEEEeC-CCchhhhhhhcc
Q psy9976 307 HCAQSLPGVLGCRMTGGGFGGCAIALVS-PLNLRRGRKKKS 346 (349)
Q Consensus 307 ~~a~~~~Ga~gakltGaG~GG~~i~l~~-~~~~~~~~~~~~ 346 (349)
+.|++ ||+|+|+||||+|||++++++ ++.++++++++.
T Consensus 911 ~~A~~--gAlGaKLTGAGGGGcvI~Lak~~~~a~~I~~~L~ 949 (974)
T PRK13412 911 ELIKD--YTLGYKLPGAGGGGYLYMVAKDPGAAERIRKILT 949 (974)
T ss_pred HHHHc--CCcEEEecccCcccEEEEEECChhhHHHHHHHHH
Confidence 99975 799999999999999999995 566777776653
|
|
| >PRK03926 mevalonate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=296.93 Aligned_cols=271 Identities=26% Similarity=0.332 Sum_probs=209.4
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+.++|||.+.+ ||.+|++ |||+++++.++++++ .+++.+... + .+.|.++++.++.
T Consensus 9 kv~L~Geh~~~~-g~~~l~~-aI~~~~~v~i~~~~~-~~~i~~~~~------------~--------~~~~~~~~~~~~~ 65 (302)
T PRK03926 9 KIYLFGEHAVVY-GKPAIAC-AIDLRTYVRAEFNDD-SIYIESDYG------------K--------TGEKHPYVSAAIE 65 (302)
T ss_pred EEEEEecceeec-CCeEEEE-EecceEEEEEEECCC-ceEEecccc------------c--------ccchhHHHHHHHH
Confidence 567889877666 9999999 999999999987754 344432110 0 1146678999998
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+.+... .+|++++++++||+++|||||||+++|++.+++++++.++ ++++++++|+++|+.++|.++|. |+++++|
T Consensus 66 ~~~~~~~-~~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l-~~~~l~~la~~~E~~~~G~~sg~-D~~~~~~ 142 (302)
T PRK03926 66 KMREEAD-KDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGL-SLEEIAKLGHKVELLVQGAASPT-DTYVSTM 142 (302)
T ss_pred HHHHhcC-CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHcCCCchH-HHHHHhc
Confidence 8876533 4599999999999999999999999999999999999999 99999999999999999999996 9999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
|| .++++... ++ +. +++.++|++|+.+.+|. ..|...+. +++.
T Consensus 143 Gg---~~~~~~~~----~l--~~-~~~~~vl~~~~~~~sT~-~~~~~~~~-------------~~~~------------- 185 (302)
T PRK03926 143 GG---FVTIPDRK----KL--PF-PECGIVVGYTGSSGSTK-ELVANVRK-------------LKEE------------- 185 (302)
T ss_pred CC---eEEEcCCC----cC--CC-CCceEEEEECCCCCcHH-HHHHHHHH-------------HHHh-------------
Confidence 98 45554222 33 33 47889999999988764 22221110 0000
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 247 LSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 247 l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
.++.+....+.+.+. +.++..++.++|++.||++|+++|..+ +.+++++|+++.+++.+++ .|++|+||||||+|
T Consensus 186 -~~~~~~~~~~~~~~~--~~~~~~al~~~d~~~l~~~~~~~~~~~-~~~~~~~p~l~~l~~~~~~-~ga~ga~lSGaG~G 260 (302)
T PRK03926 186 -YPELIEPILSSIGKI--SEKGEELILSGDYVSLGELMNINQGLL-DALGVSTKELSELIYAART-AGALGAKITGAGGG 260 (302)
T ss_pred -CHHHHHHHHHHHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHh-CCCceeeeccCCCC
Confidence 111122222233333 566778999999999999999999755 5589999999999999999 69999999999999
Q ss_pred ceeEEEeCCCchhhhhhhc
Q psy9976 327 GCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~~~~~~~~~~ 345 (349)
||+++|++++.++++++++
T Consensus 261 g~v~~l~~~~~~~~~~~~~ 279 (302)
T PRK03926 261 GCMVALAAPEKQSEVATAI 279 (302)
T ss_pred CEEEEEeccccHHHHHHHH
Confidence 9999999988888777654
|
|
| >PTZ00298 mevalonate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=289.10 Aligned_cols=282 Identities=17% Similarity=0.202 Sum_probs=205.9
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecC-CCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNN-SNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVV 85 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~-d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~ 85 (349)
|.+++||.+|++. ...+.. +||++..+.++..+ ++.+.+.+... .++.+ ...-.|++..+.
T Consensus 18 kvil~GEHaVvyg-~~aI~~-~I~~~d~~~i~~~~~~~~~~~~~~~~--------~~~~~--------~~~~~n~~~~a~ 79 (328)
T PTZ00298 18 KVILFGEHFVVYG-AEAIVA-GIDEYTECRLELTKGVPGLQVVDQRP--------AVPGY--------IVEKREEQRKAH 79 (328)
T ss_pred eEEEEecceeecC-Cchhhh-ecccceEEEEEEccCCCCceeccccc--------cccch--------HHHhHHHHHHHH
Confidence 6788999988864 455557 99998776665443 22222222110 01100 001136666666
Q ss_pred HHHHhc-CCC--CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy9976 86 SIFNDR-VAP--VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQY 162 (349)
Q Consensus 86 ~~l~~~-~~~--~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~ 162 (349)
..+.+. +.. .+|++|+|.++||+++|||||||++||++.+++++++.++ +++++++++..+|+.++|.|+|. |++
T Consensus 80 ~~~~~~~~~~~~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~l-s~~el~~~a~~~E~~~~g~~sG~-D~~ 157 (328)
T PTZ00298 80 QLVLRHLNIDTSVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNL-TEEEVNLSAFVGEGGYHGTPSGA-DNT 157 (328)
T ss_pred HHHHHHHhcccCCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCChH-HHH
Confidence 665442 322 2599999999999999999999999999999999999999 99999999999999999999998 999
Q ss_pred HHHhccCCeEEEEecCC--CeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHH
Q psy9976 163 VSVMGEEGSALLIDCKT--HEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLED 240 (349)
Q Consensus 163 a~~~gg~~~~~~~d~~~--~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~ 240 (349)
++++|| +++++... ..+++++++ +++.+++++|+.+.+|. ..|...+. +++..++
T Consensus 158 ~~~~Gg---~~~~~~~~g~~~~~~l~~~--~~~~lvv~~~~~~~sT~-~~~~~v~~-------------~~~~~p~---- 214 (328)
T PTZ00298 158 AATYGG---LISYRRVNGKSVFKRIAFQ--QPLYLVVCSTGITASTT-KVVGDVRK-------------LKENQPT---- 214 (328)
T ss_pred HHHcCC---eEEEecCCCccceeEecCC--CCCeEEEEECCCchhHH-HHHHHHHH-------------HHhcCHH----
Confidence 999998 56655332 235666655 47789999999988864 22321110 0111111
Q ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEe
Q psy9976 241 KHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRM 320 (349)
Q Consensus 241 ~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakl 320 (349)
.+.+....+.+ ++.++..+|.++|++.++++|+++|+.++. +++++|+++.+++.+++ .|++|+||
T Consensus 215 ----------~~~~~~~~~~~--~~~~~~~al~~~d~~~lg~~m~~~~~~l~~-~~v~~p~l~~l~~~~~~-~Ga~gakl 280 (328)
T PTZ00298 215 ----------WFNRLLENYNA--CVSEAKEALQKGNLFRVGELMNANHDLCQK-LTVSCRELDSIVQTCRT-YGALGAKM 280 (328)
T ss_pred ----------HHHHHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHh-CCCceeEe
Confidence 11222233332 378889999999999999999999999986 78999999999999999 69999999
Q ss_pred cccCccceeEEEeCC-Cchhhhhhhc
Q psy9976 321 TGGGFGGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 321 tGaG~GG~~i~l~~~-~~~~~~~~~~ 345 (349)
||+|+|||+++|+++ +.++++.+.+
T Consensus 281 SGsG~GG~v~al~~~~~~a~~~~~~l 306 (328)
T PTZ00298 281 SGTGRGGLVVALAASEDQRDAIAKAV 306 (328)
T ss_pred ccCCCCeEEEEEecchhhHHHHHHHH
Confidence 999999999999976 5566665443
|
|
| >KOG1511|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=243.09 Aligned_cols=287 Identities=21% Similarity=0.255 Sum_probs=197.0
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcc--------c---------
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ--------K--------- 69 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~--------~--------- 69 (349)
|.+++||-+|++ |..+|++ +||++||+.+.+..+++|.+.-.+.. -...|.+++.. .
T Consensus 12 KvILfGEHAVVy-g~~AlAa-ai~LrTyl~l~~san~~i~l~l~di~----~~~~w~l~~~~~~l~~~~~~~~~~q~p~~ 85 (397)
T KOG1511|consen 12 KVILFGEHAVVY-GRTALAA-AIDLRTYLRLQTSANDRILLQLPDIS----IEKAWSLADFNGALPEQRSTYESVQTPAS 85 (397)
T ss_pred cEEEeccceeEE-CCceeEE-EeecceeEEEEecCCCeEEEecccCC----ceEEEEhhhhhhhhhhhhhhhhccCCcch
Confidence 667899988876 5678888 99999999998888888887655542 23455554310 0
Q ss_pred ---------CCC---CCcCHhHH--HHHHHHHHHhcCC----CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhC
Q psy9976 70 ---------LTP---GAPKWANY--VKGVVSIFNDRVA----PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITD 131 (349)
Q Consensus 70 ---------l~~---~~~~w~~~--v~~~~~~l~~~~~----~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~ 131 (349)
+.. ....-..+ +...++.|.-... ..+.+++.+.|++|+|+|||||||++|+++.++..+.|
T Consensus 86 ~~~~e~~k~l~~l~~~~~~~~~~~a~~~~lYlf~~l~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g 165 (397)
T KOG1511|consen 86 EVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFLGLCLRAPGTLPALTVVVDSELPLGAGLGSSAAISVALATALLRLAG 165 (397)
T ss_pred hhhHHHHHHhhhhhhcchhhhHHHHHHHHHHHHHHhhhcccCCCcceEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcc
Confidence 000 00000000 1111222211111 23349999999999999999999999999999998776
Q ss_pred CCC----------CCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCC
Q psy9976 132 EKT----------LKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSN 201 (349)
Q Consensus 132 ~~~----------~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~ 201 (349)
.-- .+.+-+-+.|...|+.+||+|||+ |+++|.||| ++.|. +..+++.++.. |.++++++||.
T Consensus 166 ~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGi-DnaV~t~Gg---~i~f~-kg~~~~~Lk~~--~~L~illtnTr 238 (397)
T KOG1511|consen 166 LIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGI-DNAVCTYGG---LISFK-KGVEIESLKHL--PPLRILLTNTR 238 (397)
T ss_pred cCCCCcchhccccchHHHHHHHHhccceeecCCCccc-chhhhccCc---eEEee-cCccceecccC--CCceEEEEccc
Confidence 421 023566788999999999999999 999999999 44443 22256665433 68999999999
Q ss_pred CCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhc----CCH
Q psy9976 202 VHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKE----GDF 277 (349)
Q Consensus 202 ~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~----~d~ 277 (349)
++++|....-. ++.+ ..++| ++.+.....+.++ ..++...+.+ .+.
T Consensus 239 v~RnTk~lVa~---------Vr~~------------------~~kfP-evi~~i~~aid~i--s~ea~~il~~e~~~~~~ 288 (397)
T KOG1511|consen 239 VPRNTKALVAG---------VREL------------------LEKFP-EVIKAIFDAIDEI--SLEAVWILQRENDEFSS 288 (397)
T ss_pred cCccHHHHHHH---------HHHH------------------HHhhh-HHHHHHHHHHHHH--HHHHHHHHhcccccCCC
Confidence 99998632110 0011 01112 2223344444455 6777777763 122
Q ss_pred H---HHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchh
Q psy9976 278 E---TFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLR 339 (349)
Q Consensus 278 ~---~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~ 339 (349)
. ++.++|..||..|.. .|||+|.+|.++...++ .| +.+|+||||+|||+++|++++.-+
T Consensus 289 ~~Eq~L~eLi~iNq~LL~a-lGVsH~~le~v~~~t~k-~g-i~sKLTGAGgGGc~itlL~~~~~q 350 (397)
T KOG1511|consen 289 PKEQKLEELIRINQDLLDA-LGVSHPSLELVCTTTRK-LG-IHSKLTGAGGGGCVITLLKPGTEQ 350 (397)
T ss_pred cHHHHHHHHHHHhHHHHHH-hCCCcHHHHHHHHHHHH-hC-cceecccCCCCceEEEEECCCCch
Confidence 2 599999999998855 99999999999999999 48 688999999999999999997633
|
|
| >TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=236.43 Aligned_cols=310 Identities=14% Similarity=0.080 Sum_probs=202.5
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCC--C----eEEEEecCCCCCCCCceEEeCCCcc-cCC-------C
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNS--N----QIHLHSDSARADKPTDISFDIPKVQ-KLT-------P 72 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d--~----~i~v~s~~~~~~~~~~~~~~l~~~~-~l~-------~ 72 (349)
||||||||.|..++-..+-. |+|.++++++++..+ . +|+|.|.+|. .....|...... .+. .
T Consensus 7 KlliAGgYlVLep~y~aiVv-al~~r~~a~v~~~~~~~~~~~~~i~v~SpQf~---~~~~~y~~~~~~~~~~~~~~~~~~ 82 (454)
T TIGR01219 7 KVLMAGGYLVLDKPYAGLVL-GLNARFYAIVKPINEEVGAWKWDVRVKSPQFS---DREWLYKISLNHLTLQSVSASDSR 82 (454)
T ss_pred eEEEecceEEecCCCcEEEE-EecceEEEEEeecccccccCcceEEEeCCCCC---CCceEEEEecCCccceeecccccC
Confidence 89999999888876655556 999999999976432 1 5788999874 123344332210 000 0
Q ss_pred CCcCHhHHHHHHHHHH----HhcCCC---CCceEEEEEeCC-------------------CC--------CCCCChHHHH
Q psy9976 73 GAPKWANYVKGVVSIF----NDRVAP---VPGFNAVILSSV-------------------PM--------GSGLSSSAAL 118 (349)
Q Consensus 73 ~~~~w~~~v~~~~~~l----~~~~~~---~~g~~i~i~s~i-------------------P~--------g~GLgSSaA~ 118 (349)
...+| .||..++... ...+.. +++++|+|.||. +. +.|||||||+
T Consensus 83 ~~~~n-~fv~~ai~~~~~y~~~~~~~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSAAv 161 (454)
T TIGR01219 83 NPFVN-PFIQYAIAAVHLYFDKESLHKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSAAM 161 (454)
T ss_pred CCCCC-hHHHHHHHHHHHHHHhccccccccCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHHHH
Confidence 12233 4776666543 333333 678999998887 22 7999999999
Q ss_pred HHHHHHHHHHhhCCCCC------------CHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhccCCeEEEEecCCC-----
Q psy9976 119 EVATYTFLESITDEKTL------------KLTDKALACQEAEHSFAGV-PCGIMDQYVSVMGEEGSALLIDCKTH----- 180 (349)
Q Consensus 119 ~vA~~~al~~~~~~~~~------------~~~~l~~~a~~~E~~~~G~-~~G~~D~~a~~~gg~~~~~~~d~~~~----- 180 (349)
+||++.||..+++.... +++.+.++|+.+|...+|+ +||. |.++++||| +.|.+|.+.
T Consensus 162 tVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~-DvAaavyGg---i~Y~rfd~~~l~~~ 237 (454)
T TIGR01219 162 TTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGF-DVSAAVYGS---QRYRRFSPELISFL 237 (454)
T ss_pred HHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCch-hhhhhhcCc---eEEEecChhhhhhh
Confidence 99999999999986652 5789999999999999996 6887 999999999 677777542
Q ss_pred -----------------------eeEEeeCCCCCCeEEEEEeCCCCcccChhh--HHHHHHH-HHHHHHHhchhccCCCC
Q psy9976 181 -----------------------EARHIPLGDDHQYVFLIINSNVHHELSSSE--YAVRRAQ-CKSVLDKLHRVSFRDVS 234 (349)
Q Consensus 181 -----------------------~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~--y~~r~~~-~~~a~~~l~~~~l~~~~ 234 (349)
+++++++| ++++++|.+++.+.+|.... ...++++ -+.+..++.
T Consensus 238 ~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP--~~l~Llvgdtg~~ssT~~lV~~V~~~~~~~p~~s~~i~~-------- 307 (454)
T TIGR01219 238 QVAITGLPLNEVLGTIVKGKWDNKRTEFSLP--PLMNLFMGDPGGGSSTPSMVGKVKKWQMSDPEESRENWQ-------- 307 (454)
T ss_pred hccccccchhhhHHHHhccCCCCceeeccCC--CCCEEEEEcCCCCcCcHHHHHHHHHHHHHCHHHHHHHHH--------
Confidence 22344444 58999999999998875321 0000000 000001110
Q ss_pred HHHHHHHHhcccCCHHHHHHHHH--HHHHH--HHHHHHHHHHhcC--------CHHHHHHHHHHHHHhhhcc-----cCC
Q psy9976 235 LKSLEDKHAQKLLSDEEYKRGHH--VVTEI--DRTYKGANALKEG--------DFETFGKLMNESHDSLRDD-----YEV 297 (349)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~r~~~--~i~e~--~rv~~~~~al~~~--------d~~~lg~lm~~s~~~lr~~-----~~v 297 (349)
.+... ++.+.....+ ...+. .--..+++.|..+ |+..+.+.|..+...||+. ..|
T Consensus 308 --~l~~a------N~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~sgv~I 379 (454)
T TIGR01219 308 --NLSDA------NLELETKLNDLSKLAKDHWDVYLRVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEASVDI 379 (454)
T ss_pred --HHHHH------HHHHHHHHHhhhhhhccccchhhhhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhcCCcc
Confidence 00000 0000000000 00000 0011223344445 7888999999999888763 367
Q ss_pred CChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCc--hhhhhh
Q psy9976 298 SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLN--LRRGRK 343 (349)
Q Consensus 298 s~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~--~~~~~~ 343 (349)
-+|++..|++.+.+++|++||+.+|||||+|+++|+..+. .+.+.+
T Consensus 380 Ep~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~ 427 (454)
T TIGR01219 380 EPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQ 427 (454)
T ss_pred cCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCChHHHHHHHH
Confidence 8999999999999999999999999999999999997753 344444
|
This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase. |
| >PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-27 Score=217.72 Aligned_cols=251 Identities=17% Similarity=0.170 Sum_probs=182.7
Q ss_pred hhhhhceee-eCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHH
Q psy9976 9 YLLKSLMVK-KRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSI 87 (349)
Q Consensus 9 ~~~~~~~~~-~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~ 87 (349)
.|.|+ +.| +|...++++ |||++.++.+++.+++.+++.+... .++ ..|.|++..++..
T Consensus 16 ~i~g~-~~dg~h~l~si~~-ai~l~~~v~v~~~~~~~~~i~~~~~----------~~~---------~~~~n~~~~~~~~ 74 (286)
T PRK00128 16 DVLGK-REDGYHEVEMIMQ-TIDLADRLEIEKLKEDGIVVESNNR----------YVP---------NDERNLAYKAAKL 74 (286)
T ss_pred ecCcc-CCCCcceeheeeE-ecCCCcEEEEEECCCCCEEEEeCCC----------CCC---------CCCCcHHHHHHHH
Confidence 34555 344 555569999 9999999999887766677665321 011 1244688888877
Q ss_pred HHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhc
Q psy9976 88 FNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMG 167 (349)
Q Consensus 88 l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~g 167 (349)
+.+.....+|++++|.++||+++|||||||.++|++.+++++++.++ ++++++++|.++|. |.+++++|
T Consensus 75 ~~~~~~~~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l-~~~~l~~~a~~~g~----------dv~~~~~G 143 (286)
T PRK00128 75 LKERYNIKQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGL-SLEELAEIGLEIGS----------DVPFCIYG 143 (286)
T ss_pred HHHhcCCCCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCc-CHHHHHHHHHHhCC----------CCCeEeeC
Confidence 76654334689999999999999999999999999999999999999 99999999998853 88889999
Q ss_pred cCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccC
Q psy9976 168 EEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLL 247 (349)
Q Consensus 168 g~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l 247 (349)
| .++.+..+..+.+++.+ ++..+++++|+...+|. ..| +.+.. .
T Consensus 144 g---~~~~~~~g~~~~~~~~~--~~~~~vv~~p~~~~~T~-~~~-----------~~~~~--------~----------- 187 (286)
T PRK00128 144 G---TALATGRGEKITPLKSP--PSCWVVLAKPDIGVSTK-DVY-----------KNLDL--------D----------- 187 (286)
T ss_pred C---eEEEecCCcccccCCCC--CCcEEEEEcCCCCCCHH-HHH-----------hcCcc--------c-----------
Confidence 8 55555444445555433 46779999999877653 111 11100 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCC-CChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 248 SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEV-SCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 248 ~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~v-s~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
+.. ...+..+..++.++|++.++++|+ +.++. +.+ .+|+++.+++.+++ .|++|++|||+|
T Consensus 188 ------~~~-----~~~~~~~~~~l~~~d~~~~~~~~~---n~l~~-~~~~~~p~l~~l~~~~~~-~Ga~g~~lSGsG-- 249 (286)
T PRK00128 188 ------KIS-----HPDTEKLIEAIEEGDYQGICANMG---NVLEN-VTLKKYPEIAKIKERMLK-FGADGALMSGSG-- 249 (286)
T ss_pred ------ccc-----CcchHHHHHHHhcCCHHHHHHhcc---CcHHH-HHHhhChHHHHHHHHHHh-cCCCeeEEcccC--
Confidence 000 001466788899999999999885 33433 555 48999999999999 699999999998
Q ss_pred ceeEEEeCCC-chhhhhhhc
Q psy9976 327 GCAIALVSPL-NLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~-~~~~~~~~~ 345 (349)
+|+++|++++ .++++.+.+
T Consensus 250 ~sv~~l~~~~~~~~~i~~~l 269 (286)
T PRK00128 250 PTVFGLFDDESRAQRIYNGL 269 (286)
T ss_pred ccEEEEeCCHHHHHHHHHHh
Confidence 9999999773 455555543
|
|
| >PLN02451 homoserine kinase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=216.54 Aligned_cols=263 Identities=16% Similarity=0.206 Sum_probs=187.0
Q ss_pred CC--cE-EEeccccc-ceEEEEEEecCC---CeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHh-
Q psy9976 19 RL--QW-IIMMDVRQ-VVTVLLGSRNNS---NQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFND- 90 (349)
Q Consensus 19 ~~--G~-vl~~~Ai~-~~~~v~~~~~~d---~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~- 90 (349)
|- |+ ++.+ |+| +|..+.+++.++ +.+.|.+.... . ...+.+ +-.|++..++..+.+
T Consensus 64 NLGpgfD~lG~-a~d~l~d~v~~~~~~~~~~~~~~i~~~~g~---~--~~l~~~----------~~~Nlv~~a~~~~~~~ 127 (370)
T PLN02451 64 NLGPGFDFLGC-AVDGLGDFVTARVDPGVRPGEVSISEITGD---T--GRLSKD----------PLRNCAGIAAIATMKL 127 (370)
T ss_pred hcccChhhhhh-hhccCcCEEEEEECCCCCcccEEEEEeccc---c--ccCCCC----------cccCcHHHHHHHHHHH
Confidence 55 55 8999 999 999999887653 35666642210 0 011111 112677666665544
Q ss_pred cCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHH-HHhccC
Q psy9976 91 RVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYV-SVMGEE 169 (349)
Q Consensus 91 ~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a-~~~gg~ 169 (349)
.+....|++|+|.++||+|+|||||||+++|++.+++++++.++ +++++++++.++|..+.|.. +|+++ +++||
T Consensus 128 ~g~~~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~l-s~~eL~~la~~~E~~v~g~h---~Dnva~a~~GG- 202 (370)
T PLN02451 128 LGIRSVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPL-GKDDLVLAGLESEAKVSGYH---ADNIAPALMGG- 202 (370)
T ss_pred cCCCCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhchhcCCC---ccchhHhhcCC-
Confidence 45445699999999999999999999999999999999999999 99999999999999888752 59887 78998
Q ss_pred CeEEEEe-cCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCC
Q psy9976 170 GSALLID-CKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLS 248 (349)
Q Consensus 170 ~~~~~~d-~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~ 248 (349)
.++.+ ..+.++.+++++..+++.++++.++.+.+|. ++.+.+.... +
T Consensus 203 --~v~~~~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~sT~------------~ar~~lp~~~------------------~ 250 (370)
T PLN02451 203 --FVLIRSYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTK------------KMRAALPKEI------------------P 250 (370)
T ss_pred --EEEEEecCCCeEEEeecCCCCCeEEEEEcCCCCccHH------------HHHHHHhhhc------------------c
Confidence 45554 4444556666653247899999999888764 2222332100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccce
Q psy9976 249 DEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGC 328 (349)
Q Consensus 249 ~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~ 328 (349)
...+ +.+..|+..+..+|.++|++.+++.|++.|.. +.....++|+++.+++.+++ .|++|++|||+| +|
T Consensus 251 -----~~~~-v~~~~~~~~l~~al~~~d~~~l~~~m~nD~~~-e~~r~~~~P~l~~l~~~~~~-~GA~ga~mSGSG--pt 320 (370)
T PLN02451 251 -----MKHH-VWNCSQAAALVAAILQGDAVLLGEALSSDKIV-EPTRAPLIPGMEAVKKAALE-AGAYGCTISGAG--PT 320 (370)
T ss_pred -----hhhH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-HHHHhhhCccHHHHHHHHHH-CCCeEEEEEccc--hh
Confidence 0111 11234466778999999999999999865432 22235689999999999999 699999999987 89
Q ss_pred eEEEeCCC-chhhhhhh
Q psy9976 329 AIALVSPL-NLRRGRKK 344 (349)
Q Consensus 329 ~i~l~~~~-~~~~~~~~ 344 (349)
+++|++++ .++++.++
T Consensus 321 vfal~~~~~~a~~i~~~ 337 (370)
T PLN02451 321 AVAVIDDEEKGEEVGER 337 (370)
T ss_pred eEEEEcCHHHHHHHHHH
Confidence 99999853 45555443
|
|
| >TIGR01920 Shik_kin_archae shikimate kinase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-25 Score=202.16 Aligned_cols=229 Identities=14% Similarity=0.118 Sum_probs=165.8
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILSSVP 107 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP 107 (349)
+||+++.+.+++.++..+.+.+.. . .|++..++..+.+.....+|+++++.++||
T Consensus 20 aI~~~~~v~v~~~~~~~~~~~~~~----------------------~---~n~i~~~~~~~~~~~~~~~g~~i~i~s~iP 74 (261)
T TIGR01920 20 GIDLWVEAKVREGDEAGVSTYVRG----------------------N---PRLIERILTAIRSKFGIVDGLEVEVESEIP 74 (261)
T ss_pred EccCceEEEEEECCCCceeeeecC----------------------C---hHHHHHHHHHHHHhcCCCCCEEEEEecCCC
Confidence 778888888877665554433311 0 168888888777654434799999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcC-CCChhhHHHHHHhccCCeEEEEecCCCeeE-Ee
Q psy9976 108 MGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAG-VPCGIMDQYVSVMGEEGSALLIDCKTHEAR-HI 185 (349)
Q Consensus 108 ~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G-~~~G~~D~~a~~~gg~~~~~~~d~~~~~~~-~l 185 (349)
+++|||||||+++|++.+++++++.++ +++++++++.++|+..++ .++|.+|+++++||| +++.+.++.... .+
T Consensus 75 ~~~GLGSSaA~~~a~~~al~~~~~~~l-~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG---~~~~~~~~~~~~~~~ 150 (261)
T TIGR01920 75 AGSGLKSSSALVNALVEAVLKAKGVEI-DDIDILRLGARLSKDAGLSVTGAFDDAAASYLGG---IVITDNRRMKILKRD 150 (261)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCC---EEEEeCCCceEEEec
Confidence 999999999999999999999999999 999999999999998764 456777999999999 677776554333 23
Q ss_pred eCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q psy9976 186 PLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRT 265 (349)
Q Consensus 186 ~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv 265 (349)
++ |+..++++.++...+|... . ...+. .. . ..+
T Consensus 151 ~~---~~~~~vv~~p~~~~tt~~~--~---------~~~l~---------------------------~~----~--~~~ 183 (261)
T TIGR01920 151 KL---EGCTAAVLVPKEGERRENV--D---------LNRFR---------------------------RI----S--PVV 183 (261)
T ss_pred CC---CCceEEEEECCCCcccccc--c---------HHHhh---------------------------hc----c--hHH
Confidence 32 3457788888764433200 0 01110 00 0 115
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhh
Q psy9976 266 YKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKK 344 (349)
Q Consensus 266 ~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~ 344 (349)
.++.++++.+|+. ++|+.+|..+....+++++ +++.+++ .|++|++|||+ |||+++|+++. +++.+.
T Consensus 184 ~~~~~~~~~~~l~---~am~~n~~l~~~~lg~~~~----~i~~a~~-~Galga~lSGa--G~sv~aL~~~~--~~v~~~ 250 (261)
T TIGR01920 184 EEAFNLALRGEYL---KAMVLNGVAYATALGYPLE----PASKALE-AGAAAAGLSGK--GPSYFALTEDP--EEAAEA 250 (261)
T ss_pred HHHHHHHhhCCHH---HHHhhChHHhHHhhCCChH----HHHHHHH-cCCcEEeecCC--CCeEEEEeCCH--HHHHHH
Confidence 6667788888877 6788888766456777775 4566888 69999999997 59999998765 444443
|
This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate. |
| >PRK01212 homoserine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=203.98 Aligned_cols=252 Identities=19% Similarity=0.253 Sum_probs=178.1
Q ss_pred cE-EEecccccceEEEEEEecCC-C-e--EEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCC
Q psy9976 21 QW-IIMMDVRQVVTVLLGSRNNS-N-Q--IHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPV 95 (349)
Q Consensus 21 G~-vl~~~Ai~~~~~v~~~~~~d-~-~--i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~ 95 (349)
|| +|.+ +++.+.++.+.+.++ . . +++..... . +++. .+ -.|.+..++..+.+.....
T Consensus 18 gfd~lG~-al~~~d~l~~~~~~~~~~~~~~~~~~~~~-----~----~~p~----~~----~~Nli~~a~~~~~~~~~~~ 79 (301)
T PRK01212 18 GFDSLGL-ALSLYDEVLVGDVVSVEAEFSIEVIGEGA-----D----KLPL----DP----EKNLVYQAALKFLEKLGKP 79 (301)
T ss_pred Chhhhhc-cccCccEEEEEEccCCCCceEEEEEecCC-----C----cCCC----CC----ccccHHHHHHHHHHHcCCC
Confidence 45 7888 999999999887543 2 2 44332110 0 1110 00 1267777777776543334
Q ss_pred CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEE
Q psy9976 96 PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLI 175 (349)
Q Consensus 96 ~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~ 175 (349)
+|++|.|.++||.++|||||||.++|++.+++++++.++ +.++++++|.++|. ++- |...+++|| .++.
T Consensus 80 ~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l-~~~eL~~~a~~~e~------~~d-dv~~~l~GG---~~~~ 148 (301)
T PRK01212 80 PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPL-SKEELLQLATEGEG------HPD-NVAPALLGG---LVLA 148 (301)
T ss_pred CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcC------CHH-HHHHHHhCC---EEEE
Confidence 689999999999999999999999999999999999999 99999999999986 221 556689998 4555
Q ss_pred -ecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHH
Q psy9976 176 -DCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKR 254 (349)
Q Consensus 176 -d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r 254 (349)
+..+..+++++.+ +++++++++|+...+|. .+.+.+.. +. +
T Consensus 149 ~~g~g~~~~~~~~~--~~~~~vlv~p~~~~sT~------------~a~~~l~~----~~--------------~------ 190 (301)
T PRK01212 149 LEENGVISVKIPVF--DDLKWVVAIPNIELSTA------------EARAVLPK----QY--------------S------ 190 (301)
T ss_pred EECCceEEEEecCC--CCeEEEEEECCCcCCHH------------HHHHhCcC----cC--------------C------
Confidence 3555567777665 47889999999877653 22222321 00 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEe
Q psy9976 255 GHHVVTEIDRTYKGANALKEGDFETFGKLMNES-HDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333 (349)
Q Consensus 255 ~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s-~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~ 333 (349)
..+.+.+..|+..+..+|.++|++.+++.|+.. |+..+ ...+|+++.+++.+++ .|++|++|||+| +|+++|+
T Consensus 191 ~~~~~~~~~~~~~l~~al~~~d~~~~~~~~~~~~~~~~~---~~~~p~~~~i~~~~~~-~Ga~g~~~SGsG--ptv~~l~ 264 (301)
T PRK01212 191 LKDAVFNSSRAALLVAALYTGDYELAGRAMKDVLHEPYR---AKLIPGFAEVRQAALE-AGALGAGISGAG--PTVFALC 264 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHhchhheHHhH---HhhCCCHHHHHHHHHH-CCCeEEEEEchh--hheeEEe
Confidence 011223345677889999999999999998432 33332 2356999999999999 699999999987 9999999
Q ss_pred CCCchhhhhhhc
Q psy9976 334 SPLNLRRGRKKK 345 (349)
Q Consensus 334 ~~~~~~~~~~~~ 345 (349)
+++..+++.+++
T Consensus 265 ~~~~~~~~~~~l 276 (301)
T PRK01212 265 DKEDAEKVADAL 276 (301)
T ss_pred ccccHHHHHHHH
Confidence 876555555443
|
|
| >PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-25 Score=207.77 Aligned_cols=266 Identities=15% Similarity=0.152 Sum_probs=185.0
Q ss_pred hhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHH
Q psy9976 10 LLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFN 89 (349)
Q Consensus 10 ~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~ 89 (349)
|.|++---++.+.++++ +||++.++.+++.+++.+++.+... .++. ...|++..++..+.
T Consensus 18 i~g~~~dGy~~l~~~~~-~i~l~d~v~v~~~~~~~~~~~~~~~----------~~~~---------~~~n~~~~~~~~~~ 77 (312)
T PRK02534 18 ILGDRPDGFHELAMVMQ-SIDLADRLELRNNGDGTIRLHCDHP----------QLST---------DDDNLIYRAAQLLR 77 (312)
T ss_pred cCccCCCCCCceEEEEE-ECCCCCEEEEEECCCCcEEEEECCC----------CCCC---------CchhHHHHHHHHHH
Confidence 34664222555568888 9999999999887776677655321 1110 12478888888776
Q ss_pred hc-CCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhcc
Q psy9976 90 DR-VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGE 168 (349)
Q Consensus 90 ~~-~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg 168 (349)
+. +...+|++|+|.++||+++|||||||+++|++.+++++++.++ ++++++++|.++|. |..++++||
T Consensus 78 ~~~~~~~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l-~~~~l~~~a~~~g~----------dv~~~~~GG 146 (312)
T PRK02534 78 KRFPFAEGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGL-TQPELESLAAELGS----------DVPFCIAGG 146 (312)
T ss_pred HHhCCCCCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCC----------CCcEEeECC
Confidence 65 4334699999999999999999999999999999999999999 99999999988752 778889998
Q ss_pred CCeEEEEecCCCeeEEeeCCCCCCeEEEEE-eCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccC
Q psy9976 169 EGSALLIDCKTHEARHIPLGDDHQYVFLII-NSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLL 247 (349)
Q Consensus 169 ~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~-~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l 247 (349)
..+....+..+++++.+ +++.++++ +++...+|. ..|..-| +.+..+ .+.
T Consensus 147 ---~~~~~~~g~~~~~~~~~--~~~~~vv~~~p~~~~~T~-~a~~~~~-------~~~~~~----~~~------------ 197 (312)
T PRK02534 147 ---TQLCFGRGEILEPLPDL--DGLGVVLAKYPSLSVSTP-WAYKTYR-------QQFGDT----YLS------------ 197 (312)
T ss_pred ---eEEEECCCCEeEECCCC--CCcEEEEEECCCCCccHH-HHHHHHh-------hhcccc----ccc------------
Confidence 33333334446666654 47888887 698887653 2221111 111110 000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHH-cCCCCeEEEecccCcc
Q psy9976 248 SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQ-SLPGVLGCRMTGGGFG 326 (349)
Q Consensus 248 ~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~-~~~Ga~gakltGaG~G 326 (349)
.+ .....+.+..|...+..+|.++|++.+++.| |+.+|....-..|+++++++.++ + .|++|+.|||+|
T Consensus 198 ~~----~~~~~~~~~~~~~~l~~al~~~d~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~-~Ga~~~~lSGsG-- 267 (312)
T PRK02534 198 DE----EDFEQRRQALRSGPLLQAISAKDPPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSL-PGCLGTMMSGSG-- 267 (312)
T ss_pred Cc----ccccccccccchhHHHHhhhccCHHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhc-cCCCeeEEECcC--
Confidence 00 0011122233355678899999999998866 55666644447899999999888 8 699999999887
Q ss_pred ceeEEEeCCC-chhhhhhhc
Q psy9976 327 GCAIALVSPL-NLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~-~~~~~~~~~ 345 (349)
+|+++|++++ .++++.+.+
T Consensus 268 ptv~~l~~~~~~a~~~~~~l 287 (312)
T PRK02534 268 PTCFALFESQEQAEQALEQV 287 (312)
T ss_pred cceEEEeCCHHHHHHHHHHH
Confidence 9999999874 555555443
|
|
| >COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-24 Score=194.87 Aligned_cols=241 Identities=19% Similarity=0.262 Sum_probs=180.3
Q ss_pred cE-EEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHH-HHHHhcCCCCCce
Q psy9976 21 QW-IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVV-SIFNDRVAPVPGF 98 (349)
Q Consensus 21 G~-vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~-~~l~~~~~~~~g~ 98 (349)
|| +|.+ |++++..+++....| ..++...... ....+++ + .|++..++ ..+++.+...+ +
T Consensus 18 GFD~lGl-Al~~~~~~~v~~~~~-~~~i~~~g~~-----~~~iP~~------~-----~n~~~~~~~~~~~~~~~~~~-~ 78 (299)
T COG0083 18 GFDVLGL-ALDLYNDVVVVEVVD-KFEIEVEGEG-----ADKIPLD------P-----ENLVYQAALKFLEALGIEAG-V 78 (299)
T ss_pred Cccceee-eccccCcEEEEEecC-cEEEEEeccc-----ccCCCCC------c-----ceeHHHHHHHHHHHhCCCcc-E
Confidence 55 9999 999987777766554 5555444310 1111211 1 13554444 44455555554 9
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHH-HHhccCCeEEEEe-
Q psy9976 99 NAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYV-SVMGEEGSALLID- 176 (349)
Q Consensus 99 ~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a-~~~gg~~~~~~~d- 176 (349)
++.++++||.++|||||||.+||.+.+++++++.++ +++++.+++...| |+| |+.+ |++|| +.+..
T Consensus 79 ~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L-~~~~ll~~a~~~E----gHp----DNVapa~lGG---~~l~~~ 146 (299)
T COG0083 79 KIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPL-SKEELLQLALEIE----GHP----DNVAPAVLGG---LVLVEE 146 (299)
T ss_pred EEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHhc----CCC----chHHHHhhCC---EEEEee
Confidence 999999999999999999999999999999999999 9999999999998 588 8888 99999 34333
Q ss_pred cCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHH
Q psy9976 177 CKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGH 256 (349)
Q Consensus 177 ~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~ 256 (349)
-.+.....+|++ ++++++++.|+.+.+|. +++++|.++. + ..
T Consensus 147 ~~~~~~~~v~~~--~~~~~v~~iP~~e~sT~------------~aR~vLP~~~------------------~------~~ 188 (299)
T COG0083 147 ESGIISVKVPFP--SDLKLVVVIPNFEVSTA------------EARKVLPKSY------------------S------RK 188 (299)
T ss_pred cCCceEEEccCC--cceEEEEEeCCccccHH------------HHHHhccccC------------------C------HH
Confidence 245555666765 49999999999988875 5667775321 1 23
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCC
Q psy9976 257 HVVTEIDRTYKGANALKEGDFETFGKLMNE-SHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP 335 (349)
Q Consensus 257 ~~i~e~~rv~~~~~al~~~d~~~lg~lm~~-s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~ 335 (349)
..+.+.+|+.-++.||.++|++.+...|++ -|+..|. -.-|.++++.+.+.+ .|++|+-+|||| +++++++++
T Consensus 189 daV~n~s~~a~lv~al~~~~~~l~~~~~~D~ihepyR~---~L~P~~~~v~~~a~~-~gA~g~~lSGAG--PTi~al~~~ 262 (299)
T COG0083 189 DAVFNLSRAALLVAALLEGDPELLRAMMKDVIHEPYRA---KLVPGYAEVREAALE-AGALGATLSGAG--PTVFALADE 262 (299)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHhccccchhhhh---hhCccHHHHHHHHhh-CCceEEEEecCC--CeEEEEecc
Confidence 456667778999999999997777777764 4455554 256889999999999 799999999998 999999999
Q ss_pred C
Q psy9976 336 L 336 (349)
Q Consensus 336 ~ 336 (349)
.
T Consensus 263 ~ 263 (299)
T COG0083 263 S 263 (299)
T ss_pred c
Confidence 5
|
|
| >TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=202.93 Aligned_cols=248 Identities=14% Similarity=0.128 Sum_probs=174.7
Q ss_pred hhhceeeeCCcE----EEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 11 LKSLMVKKRLQW----IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 11 ~~~~~~~~~~G~----vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
.++..-.+++|| ++++ +||+++++.+++++++.+++.+... .++. + .|++..++.
T Consensus 13 ~l~i~~~r~dGyH~l~sl~~-~i~l~d~v~i~~~~~~~i~~~~~~~----------~~~~-------~---~nlv~~a~~ 71 (293)
T TIGR00154 13 FLYITGKRPDGYHELQTLMQ-FLDLGDKIIISVRSDDDIRLLKGDF----------DVPL-------E---ENLIYRAAQ 71 (293)
T ss_pred EEecCCcCCCCCcceEEEEE-EeccCcEEEEEECCCCcEEEeeCCC----------CCCC-------C---CcHHHHHHH
Confidence 344434458898 9999 9999999999988887788766432 1110 1 179999998
Q ss_pred HHHhcCC----CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy9976 87 IFNDRVA----PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQY 162 (349)
Q Consensus 87 ~l~~~~~----~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~ 162 (349)
.+.+... ..+|+++.|.++||+++|||||||.++|++.+++++++.++ ++++++++|.++| . |..
T Consensus 72 ~l~~~~~~~~~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l-~~~~l~~la~~lg---------~-Dv~ 140 (293)
T TIGR00154 72 LLKNFANSKIKSLDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGL-SLEELAELGLTLG---------A-DVP 140 (293)
T ss_pred HHHHHhcccccCCCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhC---------C-Ccc
Confidence 8876543 35699999999999999999999999999999999999999 9999999999874 2 888
Q ss_pred HHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHH
Q psy9976 163 VSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKH 242 (349)
Q Consensus 163 a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~ 242 (349)
.+++|| ..+....+..+++++.+ +++.+++++|+...+|. ..| +.+.. ....
T Consensus 141 ~~~~gg---~~~~~g~ge~~~~l~~~--~~~~~vl~~p~~~~sT~-~~~-----------~~l~~---~~~~-------- 192 (293)
T TIGR00154 141 FFVSGH---AAFATGVGEIITPFEDP--PEKWVVIAKPHVSISTP-VVY-----------QAYKL---PRNT-------- 192 (293)
T ss_pred eEEECC---eEEEEecCcEEEECCCC--CCcEEEEEcCCCCcChH-HHH-----------Hhhhh---cccC--------
Confidence 899998 45554444445555433 46779999999988764 222 11110 0000
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecc
Q psy9976 243 AQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTG 322 (349)
Q Consensus 243 ~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltG 322 (349)
+ .. ...+..++..+++..+... .|+.++.....++|+++++++.+++ .|+++++|||
T Consensus 193 -----~-~~-------------~~~l~~~~~~~~~~~~~~~---~~ndle~~~~~~~p~l~~i~~~l~~-~Ga~~a~mSG 249 (293)
T TIGR00154 193 -----P-KR-------------AKEWLKKISLECLQLLDSN---GLNDLEKVALKRHTEVAQALNWLLE-YGLAPERLSG 249 (293)
T ss_pred -----c-ch-------------hHHHHHHHhhccHHHHhhh---hcCccHHHHHhcCHHHHHHHHHHHh-CCCCeEEEec
Confidence 0 00 1123334444455444322 2444544323388999999999999 6999999999
Q ss_pred cCccceeEEEeCCCc-hhhhhh
Q psy9976 323 GGFGGCAIALVSPLN-LRRGRK 343 (349)
Q Consensus 323 aG~GG~~i~l~~~~~-~~~~~~ 343 (349)
+| +|+++|++++. ++++.+
T Consensus 250 SG--~tvf~l~~~~~~a~~~~~ 269 (293)
T TIGR00154 250 SG--ACVFALFDMESEAEQVLE 269 (293)
T ss_pred cc--cceEEEeCCHHHHHHHHH
Confidence 96 99999998754 444444
|
Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis. |
| >TIGR00191 thrB homoserine kinase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=197.02 Aligned_cols=247 Identities=17% Similarity=0.217 Sum_probs=168.7
Q ss_pred CcE-EEecccccceEEEEEEe----cCCC-eEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhc-C
Q psy9976 20 LQW-IIMMDVRQVVTVLLGSR----NNSN-QIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDR-V 92 (349)
Q Consensus 20 ~G~-vl~~~Ai~~~~~v~~~~----~~d~-~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~-~ 92 (349)
-|| +|.+ |++.|..+.+.. .... .+++..... . .++ ..+ -.|++..++..+.+. +
T Consensus 14 ~GfD~lg~-al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~p----~~~----~~Nlv~~a~~~~~~~~g 75 (302)
T TIGR00191 14 PGFDVLGA-ALSLYLGLTVTDVVAQESDDTEIEAEGEGV-----E----KIP----TEP----TDNLIYQVAKRFLDQLG 75 (302)
T ss_pred cChhhhhh-hccccceEEEEeeecccCCCceEEEEeccc-----c----cCC----CCc----ccccHHHHHHHHHHHcC
Confidence 355 8999 999998777764 2221 233332110 0 111 000 126887777766554 4
Q ss_pred CCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHH-HHHHhccCCe
Q psy9976 93 APVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQ-YVSVMGEEGS 171 (349)
Q Consensus 93 ~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~-~a~~~gg~~~ 171 (349)
.+.+|++|.|.++||+++|||||||.++|++.+++++++.++ ++++++++|.++|. +| |+ .+++|||
T Consensus 76 ~~~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l-~~~el~~~a~~~E~----h~----Dnv~~~l~GG--- 143 (302)
T TIGR00191 76 IRMPPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPL-SKERLLDYASELEG----HP----DNVAPALLGG--- 143 (302)
T ss_pred CCCCCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhcC----Cc----ccHHHHhccC---
Confidence 333699999999999999999999999999999999999999 99999999999985 23 74 5688998
Q ss_pred EEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHH
Q psy9976 172 ALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEE 251 (349)
Q Consensus 172 ~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~ 251 (349)
+++....+..+.+++++..+++.+++++|+.+.+|. ++.+.+... + +.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~p~~~~sT~------------~a~~~lp~~----~--------------~~-- 191 (302)
T TIGR00191 144 FQLAFVEDDKLEVLKIPIFSKLDWVLAIPNIEVSTA------------EARAVLPKA----Y--------------PR-- 191 (302)
T ss_pred EEEEEEcCCceEEEEeCCCCCEEEEEEECCCcccHH------------HHHHhCccc----C--------------CH--
Confidence 555544444455655542147899999999887764 222333210 0 10
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--HHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcccee
Q psy9976 252 YKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNES--HDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCA 329 (349)
Q Consensus 252 ~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s--~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~ 329 (349)
.+.+.+..|...+..+|.+++++ +++.+..+ |+..+ ...+|+++.+++.+++ .|++|++|||+| +|+
T Consensus 192 ----~~~v~~~~~~~~l~~al~~~~~~-l~~~~~~d~l~e~~~---~~l~p~l~~i~~~~~~-~Ga~g~~lSGsG--ptv 260 (302)
T TIGR00191 192 ----QDLVFNLSHLAGLVHAIYQKKPD-LGAIMMKDRIHQPYR---ESLIPNLFKIKQAALE-KGAYGITISGSG--PTI 260 (302)
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCHH-HHHHHcccccchhhH---hhhCCCHHHHHHHHHH-CCCeEEEEEchh--hhh
Confidence 11122233455567888888764 56665544 23333 3468999999999999 699999999998 999
Q ss_pred EEEeCCCchh
Q psy9976 330 IALVSPLNLR 339 (349)
Q Consensus 330 i~l~~~~~~~ 339 (349)
++|++++...
T Consensus 261 ~al~~~~~~~ 270 (302)
T TIGR00191 261 LAMADEEFAE 270 (302)
T ss_pred eEEecchhhH
Confidence 9999876543
|
P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054) |
| >PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=194.18 Aligned_cols=207 Identities=13% Similarity=0.157 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy9976 79 NYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGI 158 (349)
Q Consensus 79 ~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~ 158 (349)
|.+..+++.+.+.....+|++|+|.|+||+++|||||||.++|++.+++++++.++ ++++++++|.++|
T Consensus 65 nl~~~~~~~~~~~~~~~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~l-s~~el~~~a~~ig---------- 133 (300)
T PRK03188 65 NLAWRAAELLAEHVGRAPDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGL-SRDELLELAAELG---------- 133 (300)
T ss_pred cHHHHHHHHHHHHhCCCCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhC----------
Confidence 67777777765543334689999999999999999999999999999999999999 9999999999874
Q ss_pred hHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHH
Q psy9976 159 MDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSL 238 (349)
Q Consensus 159 ~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~ 238 (349)
.|..++++|| .++.+..+..+.+++.+ +++.++++.++...+|. ..|+ .+.. ++..
T Consensus 134 ~dv~~~~~GG---~~~~~~~g~~~~~~~~~--~~~~~~lv~p~~~~sT~-~~~~-----------~l~~--~~~~----- 189 (300)
T PRK03188 134 SDVPFALLGG---TALGTGRGEQLAPVLAR--GTFHWVLAFADGGLSTP-AVFR-----------ELDR--LREA----- 189 (300)
T ss_pred CCcchhhcCC---eEEEEecCCEEEECCCC--CCcEEEEEeCCCCCCHH-HHHH-----------hchh--hhcc-----
Confidence 2888899998 55555444445555443 35566666666555442 2222 1110 0000
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCC-CChhHHHHHHHHHcCCCCeE
Q psy9976 239 EDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEV-SCKELDDIAHCAQSLPGVLG 317 (349)
Q Consensus 239 ~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~v-s~p~ld~l~~~a~~~~Ga~g 317 (349)
..+....++..+..++.++|++.+++.|.. .++. +.+ .+|+++++++.+++ .|++|
T Consensus 190 ------------------~~~~~~~~~~~~~~al~~~d~~~l~~~~~n---~le~-~~~~~~p~l~~l~~~~~~-~Galg 246 (300)
T PRK03188 190 ------------------GDPPRLGEPDPLLAALRAGDPAQLAPLLGN---DLQA-AALSLRPSLRRTLRAGEE-AGALA 246 (300)
T ss_pred ------------------ccccccccHHHHHHHHHcCCHHHHHHHhhC---cCHH-HHHHhCchHHHHHHHHHH-CCCCE
Confidence 000011125778899999999999999853 2332 434 49999999999999 69999
Q ss_pred EEecccCccceeEEEeCC-Cchhhhhhhc
Q psy9976 318 CRMTGGGFGGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 318 akltGaG~GG~~i~l~~~-~~~~~~~~~~ 345 (349)
++|||+| +++++|+++ +.++++.+.+
T Consensus 247 a~lSGsG--~tv~~l~~~~~~~~~~~~~l 273 (300)
T PRK03188 247 GIVSGSG--PTCAFLCADADSAVDVAAAL 273 (300)
T ss_pred EEEEccc--cceEEEeCCHHHHHHHHHHH
Confidence 9999987 678899986 4455665544
|
|
| >PRK01123 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=186.32 Aligned_cols=236 Identities=15% Similarity=0.100 Sum_probs=158.2
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILSSVP 107 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP 107 (349)
+||++..+.+++.++. +.+.... . .++ . .. .|++..++..+.+......||++++.++||
T Consensus 26 ~i~l~~~v~v~~~~~~-~~~~~~~------~----~~~------~--~~-~~~v~~~~~~~~~~~~~~~~~~i~i~s~IP 85 (282)
T PRK01123 26 GIDLKTTATVELSDDG-GGIEGEI------S----GNP------D--AD-TRLIERCVELVLERFGIDYGATVRTKSEIP 85 (282)
T ss_pred EeccEEEEEEEECCCC-ceeeecc------c----CCC------C--CC-chHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 7889999998776553 2222110 0 011 0 11 267777777665543223599999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhccCCeEEEEecCCCe-eEEe
Q psy9976 108 MGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGV-PCGIMDQYVSVMGEEGSALLIDCKTHE-ARHI 185 (349)
Q Consensus 108 ~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~-~~G~~D~~a~~~gg~~~~~~~d~~~~~-~~~l 185 (349)
+++|||||||+++|++.+++++++.++ ++++++++|.++|+...+. .++.+|+++++||| +++.+..+.. +..
T Consensus 86 ~~~GLGSSaA~~va~~~a~~~~~~~~l-~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG---~~~~~~~~~~~~~~- 160 (282)
T PRK01123 86 LASGLKSSSAAANATVLATLDALGEDL-DDLDILRLGVKASRDAGVTVTGAFDDACASYFGG---VTVTDNREMKLLKR- 160 (282)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHhhccccccccCchhHHHHHHhCC---EEEEcCCCceEEEE-
Confidence 999999999999999999999999999 9999999999999987664 35667899999999 5666543322 223
Q ss_pred eCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q psy9976 186 PLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRT 265 (349)
Q Consensus 186 ~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv 265 (349)
.+. ++.++++.|+.+.+|... |+ .++.. . . .++
T Consensus 161 -~~~--~~~~vv~~p~~~~~T~~~----r~-------~~l~~-------------~------~--------------~~~ 193 (282)
T PRK01123 161 -DEV--ELDVLVLIPPEGAFSASA----DV-------ERMKL-------------I------A--------------PYV 193 (282)
T ss_pred -ecC--CcEEEEEECCCCcchhhh----hh-------hhchh-------------c------C--------------cHH
Confidence 332 578999999987766421 10 00110 0 0 002
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 266 YKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 266 ~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
.++.++++.+|+. ++|+.++...|...++++ .++..+++ .|++|+++||+ |||+++|++.+..+++.+.+
T Consensus 194 d~~~~~~~~~~l~---~~~~~~~l~~~~~l~~~~----~~i~~a~~-~Ga~ga~lSGa--Gptv~al~~~~~~~~v~~~l 263 (282)
T PRK01123 194 DMAFELALDGEYF---KAMTLNGLLYSSALGFPT----EPALEALE-AGAVGVGLSGT--GPSYVAIVDEEDPEEVKEAW 263 (282)
T ss_pred HHHHHHHhhccHH---HHHHhCCchhhhhhCCCh----HHHHHHHH-CCCeEEEEecC--CCeEEEEeCCCCHHHHHHHH
Confidence 2333344556765 566665444444455554 33555778 69999999986 49999999887777665553
|
|
| >PTZ00299 homoserine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=185.88 Aligned_cols=238 Identities=17% Similarity=0.209 Sum_probs=165.6
Q ss_pred cE-EEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHH-HhcCC-CCCc
Q psy9976 21 QW-IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIF-NDRVA-PVPG 97 (349)
Q Consensus 21 G~-vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l-~~~~~-~~~g 97 (349)
|| +|.+ |++++..+.+++.+...+++..... . .++. .-.|.+..++..+ .+.+. ..+|
T Consensus 22 GFDsLGl-AL~lyd~v~v~~~~~~~i~i~G~~~-----~----~lp~---------~~~nlv~~a~~~~~~~~~~~~~~g 82 (336)
T PTZ00299 22 AYDTLGM-ALSIFMELTVEHADAFSMTVEGEGS-----E----HIST---------DEDNMVVQACRLAFEEYAHKSMPP 82 (336)
T ss_pred cHHHHhh-hcccCcEEEEEECCCCEEEEecCCc-----C----CCCC---------CcchHHHHHHHHHHHHhcCCCCCc
Confidence 45 8889 9999999998875543454432110 0 1111 0125665555544 33333 2358
Q ss_pred eEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHhhcCCCChhhH-HHHHHhccCCeEE
Q psy9976 98 FNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLK---LTDKALACQEAEHSFAGVPCGIMD-QYVSVMGEEGSAL 173 (349)
Q Consensus 98 ~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~---~~~l~~~a~~~E~~~~G~~~G~~D-~~a~~~gg~~~~~ 173 (349)
+++.|.++||+++|||||||.+||.+.+++++++.++ + ++++.+++.++| |+| | ...+++|| +.
T Consensus 83 ~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l-~~~~~~el~~~A~~~E----GHp----DNVapal~GG---~~ 150 (336)
T PTZ00299 83 LKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTM-ETENEEALLQAIAKFE----GHP----DNAAPAIYGG---IQ 150 (336)
T ss_pred eEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCC-CccCHHHHHHHHHhhc----CCc----ccHHHHHhCC---EE
Confidence 9999999999999999999999999999999999988 5 789999999988 566 9 45599999 44
Q ss_pred EEe-cCCCe--eEEeeCCCCCCeEEEEEeCCCCc--ccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCC
Q psy9976 174 LID-CKTHE--ARHIPLGDDHQYVFLIINSNVHH--ELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLS 248 (349)
Q Consensus 174 ~~d-~~~~~--~~~l~~~~~~~~~~ll~~s~~~~--~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~ 248 (349)
+.. ....+ ..+++.+ +++.++++.|+... +| . .++++|.++ + +
T Consensus 151 ~~~~~~~ge~~~~~i~~~--~~~~~vv~iP~~~~~~sT--~----------~aR~vLP~~----v--------------~ 198 (336)
T PTZ00299 151 LVYKKDNGRFLTYRVPTP--PNLSVVLFVPHNKMKANT--H----------VTRNLIPTS----V--------------S 198 (336)
T ss_pred EEEecCCCceEEEecCCC--CCeEEEEEECCCCccccH--H----------HHHhhCccc----C--------------c
Confidence 333 22223 3345544 48899999998743 44 2 233444311 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccC--CCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 249 DEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYE--VSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 249 ~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~--vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
..+.+.+..|+..++.+|.++|++.+..+.+.-|+ .|. -..|+++.+.+.+.+ .|++|+-|||||
T Consensus 199 ------~~dav~n~~~~~~lv~al~~~d~~ll~~~~D~lhe----p~R~~~liP~~~~v~~~~~~-~Ga~g~~lSGSG-- 265 (336)
T PTZ00299 199 ------LEDAVFNISRTSILVLALSTGDLRMLKSCSDKLHE----QQRSDALFPHFRPCVKAARE-AGAHYAFLSGAG-- 265 (336)
T ss_pred ------HHHHHHhhhHHHHHHHHHHhCCHHHHHhchhcccC----cccccccCccHHHHHHHHHH-CCCeEEEEEchh--
Confidence 12344455666778999999999998653222333 343 358999999999999 699999999998
Q ss_pred ceeEEEeC
Q psy9976 327 GCAIALVS 334 (349)
Q Consensus 327 G~~i~l~~ 334 (349)
.++++|++
T Consensus 266 PTv~al~~ 273 (336)
T PTZ00299 266 PSVCALVG 273 (336)
T ss_pred hhheEEec
Confidence 99999998
|
|
| >PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-22 Score=183.48 Aligned_cols=244 Identities=12% Similarity=0.145 Sum_probs=160.5
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcc--cC--C---CCCcCHhHHHHHHHHHHHhcCCCCCceEE
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ--KL--T---PGAPKWANYVKGVVSIFNDRVAPVPGFNA 100 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~--~l--~---~~~~~w~~~v~~~~~~l~~~~~~~~g~~i 100 (349)
-||++..|.. +|+|+.+.|.|....++-.+.+++...+.. .+ . .....|.|++..++..+.+... ..|++|
T Consensus 8 KiNL~L~v~~-~r~dGyH~l~s~~~~i~l~D~l~i~~~~~~~~~~~~~~~~~~~~~~~Nlv~~a~~~~~~~~~-~~~~~i 85 (269)
T PRK14609 8 KINLGLNVVE-KRPDGYHNLETVFYPIPLTDALEITVRSATKTSLTVSGIPIPGDPEDNLVVKAYNLLKKDFP-LPPVHI 85 (269)
T ss_pred cEEeeeccCC-cCCCCcceeeEEEEECCCCcEEEEEEcCCCcEEEEeCCCCCCCCccccHHHHHHHHHHHHcC-CCCeEE
Confidence 6666666663 566677666666443433444444321100 00 0 0113467999998888876544 468999
Q ss_pred EEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCC
Q psy9976 101 VILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTH 180 (349)
Q Consensus 101 ~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~ 180 (349)
.+.++||+++|||||||.++|++.+++++++.++ +.+++.++|.++ |. |...+++|+ ..+....+.
T Consensus 86 ~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l-~~~~l~~la~~i---------Ga-Dvpffl~g~---~a~~~G~Ge 151 (269)
T PRK14609 86 HLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGL-SDEELEAYAATL---------GA-DCAFFIRNK---PVYATGIGD 151 (269)
T ss_pred EEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHh---------CC-CceEEccCC---CEEEEEeCC
Confidence 9999999999999999999999999999999999 999999999976 33 888888886 344444455
Q ss_pred eeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy9976 181 EARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVT 260 (349)
Q Consensus 181 ~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~ 260 (349)
.+++++.+. +++.+++++|++..+|. ..| +.+... . +... ....+.
T Consensus 152 ~l~~l~~~~-~~~~~vlv~P~~~~sT~-~a~-----------~~l~~~----~--------------~~~~---~~~~~~ 197 (269)
T PRK14609 152 IFSPIDLSL-SGYYIALVKPDIHVSTA-EAY-----------AGIKPH----K--------------PETS---LKEIIR 197 (269)
T ss_pred eeEECCCCC-CCCEEEEECCCCCCChH-HHH-----------Hhhhhc----C--------------cchh---hHHHHh
Confidence 567765443 57789999999988774 222 222100 0 0000 000000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCC-Cchh
Q psy9976 261 EIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP-LNLR 339 (349)
Q Consensus 261 e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~-~~~~ 339 (349)
.+... +++.-|+.++......+|+++.+.+.+++ .|+++++||||| +|+++++++ +..+
T Consensus 198 --------------~~~~~---~~~~l~Ndle~~~~~~~p~l~~i~~~l~~-~ga~~~~mSGSG--~tvf~l~~~~~~~~ 257 (269)
T PRK14609 198 --------------QPVEE---WKNKLVNDFEDSVFPKYPEIAEIKEKLYR-SGALYAAMSGSG--SSVFGIFKKPPNLD 257 (269)
T ss_pred --------------hHHHH---HHhhcCCChHHHHHHcChHHHHHHHHHHh-CCCCeEEEeCcc--ceeEEEECChHHcC
Confidence 00001 11112344444445578999999999999 699999999997 999999975 4455
Q ss_pred hh
Q psy9976 340 RG 341 (349)
Q Consensus 340 ~~ 341 (349)
+|
T Consensus 258 ~~ 259 (269)
T PRK14609 258 EF 259 (269)
T ss_pred cc
Confidence 54
|
|
| >PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=187.40 Aligned_cols=250 Identities=16% Similarity=0.126 Sum_probs=162.6
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCc-c-cCC---C--CCcCHhHHHHHHHHHHHhcCC-CCCceE
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKV-Q-KLT---P--GAPKWANYVKGVVSIFNDRVA-PVPGFN 99 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~-~-~l~---~--~~~~w~~~v~~~~~~l~~~~~-~~~g~~ 99 (349)
-||++..|.. +|+|+.+.|.|....++-.+.+++...+. . .+. . -...+.|++..++..+.+... ..+|++
T Consensus 14 KiNL~L~i~~-kr~dGyH~l~s~~~~i~l~D~l~i~~~~~~~i~~~~~~~~~ip~~~~Nlv~ka~~~~~~~~g~~~~~~~ 92 (290)
T PRK14608 14 KINLALHVTG-RRADGYHLLESLVAFADVGDRLTLEPAEALSLTVSGPFAAGLGDGDDNLVLRAARALRARVGPGLPPGA 92 (290)
T ss_pred eEEeeeccCC-CCCCCCcceeEEEEECCCCcEEEEEECCCCcEEEeCCCccCCCCCCCcHHHHHHHHHHHHhCCCCCceE
Confidence 6777766663 56777777777654343344554432111 0 000 0 012357999888888876542 456999
Q ss_pred EEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCC
Q psy9976 100 AVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKT 179 (349)
Q Consensus 100 i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~ 179 (349)
++|.++||+++|||||||.+||++.+++++++.++ ++++++++|.++| . |..++++|| ..+....+
T Consensus 93 i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~l-s~~el~~la~~ig---------~-dv~~~l~gg---~~~~~g~g 158 (290)
T PRK14608 93 FHLEKNLPVAAGIGGGSADAAAALRLLARLWGLAL-DDERLAALALSLG---------A-DVPVCLDSR---PLIMRGIG 158 (290)
T ss_pred EEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhC---------C-CcchhhcCC---eEEEEecC
Confidence 99999999999999999999999999999999999 9999999999874 2 889999998 44444444
Q ss_pred CeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHH
Q psy9976 180 HEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259 (349)
Q Consensus 180 ~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i 259 (349)
..+++++.+ +++.++|++|+.+.+|. ..| +.+... ...+.. ..+
T Consensus 159 ~~~~~l~~~--~~~~~vv~~p~~~~sT~-~~~-----------~~l~~~--~~~~~~--------------------~~~ 202 (290)
T PRK14608 159 EELTPLPGL--PSLPAVLVNPGVPVATP-DVF-----------RALGLR--DGPPLP--------------------GAP 202 (290)
T ss_pred CEeEECCCC--CCcEEEEECCCCCcChH-HHH-----------Hhhccc--cCCcch--------------------hhh
Confidence 456666532 57789999999988864 222 222110 000000 000
Q ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCC-CCeEEEecccCccceeEEEeCCC
Q psy9976 260 TEIDRTYKGANALK--EGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLP-GVLGCRMTGGGFGGCAIALVSPL 336 (349)
Q Consensus 260 ~e~~rv~~~~~al~--~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~-Ga~gakltGaG~GG~~i~l~~~~ 336 (349)
....+...+..++. .+|++... --.+|+++.+.+.+++ . |++|++||||| +++++|++++
T Consensus 203 ~~~~~~~~l~~~~~~~~ndle~~~--------------~~l~p~l~~i~~~~~~-~~Ga~~~~lSGSG--stvf~l~~~~ 265 (290)
T PRK14608 203 DPLASADALLAALAATRNDLEPPA--------------LALAPVIGEVLAALRA-QPGALLARMSGSG--ATCFALFADE 265 (290)
T ss_pred hhhhhhhhHHHHHHhccCccHHHH--------------HHcCcHHHHHHHHHHh-cCCCCeeEEeccc--cCeEEEeCCH
Confidence 01111222222222 12332211 1258999999999999 8 99999999998 9999999864
Q ss_pred -chhhhhhhc
Q psy9976 337 -NLRRGRKKK 345 (349)
Q Consensus 337 -~~~~~~~~~ 345 (349)
.++++.+.+
T Consensus 266 ~~a~~~~~~l 275 (290)
T PRK14608 266 AAAEAAAAAI 275 (290)
T ss_pred HHHHHHHHHh
Confidence 355555443
|
|
| >PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=180.64 Aligned_cols=195 Identities=13% Similarity=0.175 Sum_probs=143.7
Q ss_pred HhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCC
Q psy9976 77 WANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPC 156 (349)
Q Consensus 77 w~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~ 156 (349)
+.|++..++..+.+......|++|++.++||+++|||||||.+||++.+++++++.++ +.+++.++|.++|.
T Consensus 60 ~~n~v~~a~~~~~~~~g~~~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l-~~~~l~~la~~i~~------- 131 (275)
T PRK14611 60 EENIVYKALRLFERYTGIDINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPL-SEEELFELASSISA------- 131 (275)
T ss_pred cccHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHhCC-------
Confidence 5689999998887654334699999999999999999999999999999999999999 99999999998863
Q ss_pred hhhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHH
Q psy9976 157 GIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236 (349)
Q Consensus 157 G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~ 236 (349)
|...+++|| .++.+..+..+.+++.+ ++..+++++|+.+.+|. ..| +.+...
T Consensus 132 ---D~~~~~~Gg---~~~~~~~g~~~~~~~~~--~~~~~vv~~p~~~~sT~-~~~-----------~~l~~~-------- 183 (275)
T PRK14611 132 ---DAPFFLKGG---FALGRGIGDKLEFLEKP--ISREITLVYPNIKSSTG-RVY-----------SKVTKQ-------- 183 (275)
T ss_pred ---CCCeeecCC---eEEEeccCceeEECCcC--CCcEEEEEeCCCCCChH-HHH-----------Hhcchh--------
Confidence 766677887 55555544445555433 35578999999988764 222 112100
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCe
Q psy9976 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316 (349)
Q Consensus 237 ~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~ 316 (349)
......+...+.+++.++|+..++..+. +.+.+.+.-..|++..+.+...+ .| +
T Consensus 184 ---------------------~~~~~~~~~~l~~~l~~~~~~~~~~~~~---n~l~~~~~~~~P~l~~~~~~l~~-~~-~ 237 (275)
T PRK14611 184 ---------------------ILTNKEDLNIIISLLREGEEKKIEEVIE---NTLGEIALELYPEIKEVYRFLEY-LG-Y 237 (275)
T ss_pred ---------------------hccCcchHHHHHHHHHcCCHHHHHHhcC---CcccHHHHHHCHHHHHHHHHHHh-CC-C
Confidence 0011122455677888999988876542 33444444578999999988766 46 5
Q ss_pred EEEecccCccceeEEEeCC
Q psy9976 317 GCRMTGGGFGGCAIALVSP 335 (349)
Q Consensus 317 gakltGaG~GG~~i~l~~~ 335 (349)
++.|||+| .++++++++
T Consensus 238 ~~~~SGSG--~tvf~l~~~ 254 (275)
T PRK14611 238 KPFVSGSG--SSVYVFGKP 254 (275)
T ss_pred CEEEeCcc--ccceeEeCC
Confidence 89999998 999999965
|
|
| >PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-21 Score=178.74 Aligned_cols=263 Identities=13% Similarity=0.101 Sum_probs=159.8
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCCCC-CCceEEeCCCc-c-cCC---CCCcCHhHHHHHHHHHHHhcCCCCCceEEE
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARADK-PTDISFDIPKV-Q-KLT---PGAPKWANYVKGVVSIFNDRVAPVPGFNAV 101 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~-~~~~~~~l~~~-~-~l~---~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~ 101 (349)
-||++..|.. +|+|+++.|.+....++. .+.+++...+. . .+. ...+.-.|.+..++..+.+.....+|++|+
T Consensus 14 KINL~L~v~~-kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~~~i~~~~~~~~~~~~~Nlv~~a~~~~~~~~~~~~~~~i~ 92 (296)
T PRK14615 14 KVNLDLRITG-VRPDGYHEIDSLFLPLPEPHDELHVRVTDAPGITVTCTIPDLDPERNTVTRAYTAFAAATGFRPPLEVH 92 (296)
T ss_pred eEEeccccCC-cCCCCCcceEEEEEECCCCCcEEEEEECCCCCEEEEECCCCCCCCccHHHHHHHHHHHHhCCCCCeEEE
Confidence 6666666553 456666666666433331 33444432110 0 000 000111578877777776543333699999
Q ss_pred EEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCe
Q psy9976 102 ILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHE 181 (349)
Q Consensus 102 i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~ 181 (349)
|.++||+++|||||||.++|++.+++++++.++ +.+++++++.++|. |...+.+|| ..+.......
T Consensus 93 i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l-~~~~l~~~a~~~ga----------DvPffl~gg---~a~~~G~Ge~ 158 (296)
T PRK14615 93 LRKGIPHGAGLGGGSADAAALLRHLNSIAPHPL-SPEALAKLAAGVGA----------DVPFFLHNV---PCRATGIGEI 158 (296)
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCC----------CCeeeccCC---CEEEEeeEeE
Confidence 999999999999999999999999999999999 99999999998754 666666676 3444444455
Q ss_pred eEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhc-cCCCCHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy9976 182 ARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVS-FRDVSLKSLEDKHAQKLLSDEEYKRGHHVVT 260 (349)
Q Consensus 182 ~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~-l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~ 260 (349)
+++++++. +++.++|++|+++.+|. ..| +.+.... +.... ..+
T Consensus 159 ~~~l~~~~-~~~~~vl~~P~~~vsT~-~a~-----------~~~~~~~~~~~~~------------~~~----------- 202 (296)
T PRK14615 159 LTPVALGL-SGWTLVLVCPEVQVSTP-WAY-----------AAWDAANAKQIAA------------SSR----------- 202 (296)
T ss_pred EEECCCCC-CCcEEEEECCCCCcChH-HHH-----------HHhhhhccccccc------------ccc-----------
Confidence 66766544 57789999999988774 223 2221100 00000 000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCC-Cchh
Q psy9976 261 EIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP-LNLR 339 (349)
Q Consensus 261 e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~-~~~~ 339 (349)
...+...+......+|...+++... .++.++...--..|+++.+.+.+++ .|++|++|||+| +|+++|+++ +.++
T Consensus 203 ~~~~~~~~l~~~~~~~~~~~~~~~~-l~ndle~~~~~l~P~l~~~~~~~~~-~GAlga~mSGSG--ptvfaL~~~~~~a~ 278 (296)
T PRK14615 203 KQNRLRGCLTTEGVADRNPLSRGLW-LHNSFEPVVFAAHPELRRLKETLLR-HGAAAALMSGSG--SSVFGLFRRRAQAE 278 (296)
T ss_pred cccchHHHHHhhhccchhhhhhhhh-ccccchhHhHHhChHHHHHHHHHHh-cCCCEEEEeccC--cceEEEeCCHHHHH
Confidence 0000111222333334333222110 0111222111378999999999999 699999999998 999999876 4456
Q ss_pred hhhhhc
Q psy9976 340 RGRKKK 345 (349)
Q Consensus 340 ~~~~~~ 345 (349)
++.+++
T Consensus 279 ~i~~~l 284 (296)
T PRK14615 279 AAFEML 284 (296)
T ss_pred HHHHHH
Confidence 666554
|
|
| >PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-21 Score=177.53 Aligned_cols=198 Identities=14% Similarity=0.118 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy9976 79 NYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGI 158 (349)
Q Consensus 79 ~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~ 158 (349)
|.+..++..+.+.....+|+++.|.++||+++|||||||.++|++.+++++++.++ +++++.++|..+ |.
T Consensus 67 nl~~~a~~~~~~~~~~~~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l-~~~~l~~~a~~~---------G~ 136 (280)
T PRK14614 67 NIAWRAADALLDLSGREVGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGL-SDERLMEIGVKL---------GA 136 (280)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHh---------CC
Confidence 67766666665543334589999999999999999999999999999999999999 999999998865 33
Q ss_pred hHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHH
Q psy9976 159 MDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSL 238 (349)
Q Consensus 159 ~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~ 238 (349)
|..++++|| ..+....+..+++++.+ +++.+++++|+...+|. ..|.. +... ++..
T Consensus 137 -Dv~~~l~gg---~~~~~g~ge~~~~l~~~--~~~~ivl~~p~~~~sT~-~~~~~-----------~~~~--~~~~---- 192 (280)
T PRK14614 137 -DVPFFIFKK---TALAEGIGDKLTAVEGV--PPLWVVLVNPGLHVSTA-WVYQN-----------LRLT--SRKD---- 192 (280)
T ss_pred -CcceeeeCC---cEEEEEcCceeEECCCC--CCcEEEEECCCCCCCHH-HHHhc-----------cccc--ccCc----
Confidence 888888987 44444344455665543 46789999999988764 22211 1000 0000
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEE
Q psy9976 239 EDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGC 318 (349)
Q Consensus 239 ~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~ga 318 (349)
....... +.. . ....++..+|++.+. + -..|+++.+++.+++ .|++|+
T Consensus 193 ----------~~~~~~~---~~~---~-~~~~~~~~ndle~~~--~------------~~~p~l~~i~~~~~~-~Galga 240 (280)
T PRK14614 193 ----------LAIIPRF---FGS---V-AEVCALLSNDLESVT--I------------GRFPVIGEIKEELLA-AGARGS 240 (280)
T ss_pred ----------chhhhhh---hhh---H-HHHhhhcccCcHHHH--H------------hcChHHHHHHHHHHh-CCCCEE
Confidence 0000000 000 1 111244557776552 0 037999999999999 699999
Q ss_pred EecccCccceeEEEeCCCc-hhhhhhh
Q psy9976 319 RMTGGGFGGCAIALVSPLN-LRRGRKK 344 (349)
Q Consensus 319 kltGaG~GG~~i~l~~~~~-~~~~~~~ 344 (349)
+|||+| ||+++|++++. ++++.+.
T Consensus 241 ~lSGSG--~tv~~l~~~~~~~~~~~~~ 265 (280)
T PRK14614 241 LMSGSG--STVFGLFDDEAAARAAAEE 265 (280)
T ss_pred EEeccc--cceEEEeCCHHHHHHHHHH
Confidence 999997 99999998765 4555443
|
|
| >PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-21 Score=178.09 Aligned_cols=204 Identities=13% Similarity=0.101 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCCh
Q psy9976 78 ANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCG 157 (349)
Q Consensus 78 ~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G 157 (349)
.|++..++..+.+......|++|.|.++||+++|||||||.++|++.+++++++.++ +.++++++|.++|.
T Consensus 64 ~nl~~~a~~~~~~~~~~~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~l-s~~el~~~a~~ig~-------- 134 (287)
T PRK14616 64 SNLCIRAAKALQEYAGVSKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINA-PSADLHRLAVKLGA-------- 134 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCC--------
Confidence 477777777665543335699999999999999999999999999999999999999 99999999999864
Q ss_pred hhHHHHHH-hccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHH
Q psy9976 158 IMDQYVSV-MGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236 (349)
Q Consensus 158 ~~D~~a~~-~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~ 236 (349)
|..+++ +|| +.+.......+++++.+. .+.+++++|+...+|. .+.+.+.++...
T Consensus 135 --Dvp~~l~~gg---~~~~~g~g~~~~~~~~~~--~~~~vvv~P~~~vsT~------------~a~~~l~~~~~~----- 190 (287)
T PRK14616 135 --DVPYFLEMKG---LAYATGIGDELEDLQLTL--PFHIVTVFPEEHISTV------------WAYKNFYRRFER----- 190 (287)
T ss_pred --CcceEeccCC---cEEEEEcCceeEECCcCC--CcEEEEECCCCCcCHH------------HHHHHhhhhccc-----
Confidence 644444 355 333333344455554443 4779999999988774 222333211000
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCC
Q psy9976 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKE-GDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGV 315 (349)
Q Consensus 237 ~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~-~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga 315 (349)
...++..++.++.. +|++.++.++|.- +..+. -..|+++.+.+.+++ .|+
T Consensus 191 ------------------------~~~~~~~l~~~l~~~~~~~l~~~~~nD~-e~~~~---~l~p~l~~v~~~~~~-~Ga 241 (287)
T PRK14616 191 ------------------------ERPDLKTLVRRLCLDGDTSVLPAFENDF-ESAVF---DHYPAVRKVKDDLLE-AGS 241 (287)
T ss_pred ------------------------CCchHHHHHHHHhcCCHHHHHHHhcCcc-HHHHH---HhChHHHHHHHHHHh-CCC
Confidence 01112333444433 5666665544422 11221 247999999999999 699
Q ss_pred eEEEecccCccceeEEEeCC-Cchhhhhhhc
Q psy9976 316 LGCRMTGGGFGGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 316 ~gakltGaG~GG~~i~l~~~-~~~~~~~~~~ 345 (349)
+|+.|||+| .|+++|+++ +.++++.+.+
T Consensus 242 lg~~lSGSG--ptv~al~~~~~~a~~i~~~l 270 (287)
T PRK14616 242 FFASLSGSG--SAVFGLFENEADAEAAAEMM 270 (287)
T ss_pred CeEEEeccc--ccceEEeCCHHHHHHHHHHh
Confidence 999999998 899999987 5566666554
|
|
| >PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=176.84 Aligned_cols=208 Identities=13% Similarity=0.072 Sum_probs=141.3
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCCh
Q psy9976 78 ANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCG 157 (349)
Q Consensus 78 ~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G 157 (349)
.|++..++..+.+......|++|+|.++||+++|||||||..++++.+++..+++. ..+++.+++.++|
T Consensus 74 ~Nlv~ka~~~~~~~~~~~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l~--~~e~L~~lA~~lG--------- 142 (297)
T PRK14613 74 QNILYKTFIKARSLFPELPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNFF--TSDEMQVFAKEIG--------- 142 (297)
T ss_pred cchHHHHHHHHHHHhCCCCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHhC---------
Confidence 58998888887665444469999999999999999999999988888888766542 3577777988873
Q ss_pred hhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHH
Q psy9976 158 IMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKS 237 (349)
Q Consensus 158 ~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~ 237 (349)
. |..+++.|+ ..+.+..+..+++++++ +.+ ++++.|++..+|. . +.+.+......
T Consensus 143 a-DvP~~l~G~---~a~~~g~Ge~~~~l~~~--~~~-~vlv~P~~~vsT~-~-----------a~~~l~~~~~~------ 197 (297)
T PRK14613 143 S-DVPFFLGEG---HAFVTGKGEIMEEIEVH--KGQ-GILALTPQVMNTG-E-----------MYALLKKPLQE------ 197 (297)
T ss_pred C-ccchhhcCC---eEEEecCCcEEEEcCCC--CCe-EEEEECCCCcChH-H-----------HHHhcchhhcc------
Confidence 2 866676665 45555555556666544 344 4677899888764 2 22333211000
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHhhhcccCCCChhHHHHHHHHHcCCCCe
Q psy9976 238 LEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLM-NESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316 (349)
Q Consensus 238 ~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm-~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~ 316 (349)
+. ...++. .+...+..++.++|++.+...| |.-+. .+ .--.|+++.+.+.+++ .|++
T Consensus 198 ----------~~-----~~~~~~--~~~~~~~~al~~~~~~~l~~~l~ndle~-~~---~~l~P~~~~i~~~~~~-~Ga~ 255 (297)
T PRK14613 198 ----------SA-----SQKNGN--TLSEDLISSLKVGDWVSLQGRLENDFEP-VA---FQLHPELGVLKDKFLE-FGSS 255 (297)
T ss_pred ----------cc-----cccccc--ccHHHHHHHHHcCCHHHHHHHhcccchH-HH---HHhCcHHHHHHHHHHH-cCCC
Confidence 00 000111 1245677888999999875543 44322 11 1248999999999999 6999
Q ss_pred EEEecccCccceeEEEeCC-Cchhhhhhhc
Q psy9976 317 GCRMTGGGFGGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 317 gakltGaG~GG~~i~l~~~-~~~~~~~~~~ 345 (349)
+++||||| +|+++++++ +.++++.+.+
T Consensus 256 ~~~mSGSG--ptvf~l~~~~~~a~~~~~~l 283 (297)
T PRK14613 256 YCSLTGSG--SSMYGLVQGLEIQEELLPRL 283 (297)
T ss_pred EEEEEccc--cceEEEeCCHHHHHHHHHHH
Confidence 99999996 999999987 5555555443
|
|
| >PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=173.46 Aligned_cols=236 Identities=17% Similarity=0.153 Sum_probs=154.4
Q ss_pred eCCcE----EEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCC
Q psy9976 18 KRLQW----IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVA 93 (349)
Q Consensus 18 ~~~G~----vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~ 93 (349)
+.+|| .|.. +||++..+.+.+.++ .+++..... .++. ...|.+..++..+.+...
T Consensus 21 ~~dgyH~l~sl~~-al~l~d~v~i~~~~~-~~~i~~~~~----------~~p~---------~~~Nli~ka~~~~~~~~g 79 (276)
T PRK14612 21 REDGYHELHTLMV-PLDVGDRLEVEPIAS-GLELRVLGA----------DLPT---------DERNLVYRAARAYLDAAG 79 (276)
T ss_pred CCCCCceeEEEEE-ECCCCCEEEEEECCC-cEEEEcCCC----------CCCC---------CCcccHHHHHHHHHHHhC
Confidence 34554 6667 888888888766543 344432110 1110 123677767666655432
Q ss_pred CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEE
Q psy9976 94 PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSAL 173 (349)
Q Consensus 94 ~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~ 173 (349)
..+|++|+|.++||+++|||||||.+||++.+++++++.++ + +.+++..+| . |.+.+++|| ..
T Consensus 80 ~~~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l-~---l~~ia~~~g---------~-dv~~~~~GG---~~ 142 (276)
T PRK14612 80 QPGGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPV-D---LPALALTLG---------A-DVPFFLLGG---AA 142 (276)
T ss_pred CCCCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCCh-H---HHHHHHHhC---------C-CcCeeeeCC---eE
Confidence 34589999999999999999999999999999999999776 5 445555442 2 888899998 44
Q ss_pred EEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHH
Q psy9976 174 LIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYK 253 (349)
Q Consensus 174 ~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 253 (349)
+....+..+++++ . +++.++|+.|+++.+|. . +.+.+..+ .+ +.
T Consensus 143 ~~~g~g~~~~~l~--~-~~~~~vv~~P~~~~sT~-~-----------a~~~l~~~---~~--------------~~---- 186 (276)
T PRK14612 143 EARGVGERLTPLE--L-PPVPLVLVNPGVAVSAR-D-----------AYRWLEPE---DF--------------GP---- 186 (276)
T ss_pred EEEecCccceEcC--C-CCcEEEEECCCCCCCHH-H-----------HHHhhccc---cC--------------CC----
Confidence 4443344455554 2 47789999999988764 2 22222100 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEe
Q psy9976 254 RGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333 (349)
Q Consensus 254 r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~ 333 (349)
..|+..+..+|.++|...+.+ .++......+|+++.+++.+++ .|++|++|||+| +|+++|+
T Consensus 187 --------~~~~~~l~~~l~~~d~~~~~n-------~l~~~~~~~~p~l~~i~~~l~~-~Ga~~~~lSGsG--ptvfal~ 248 (276)
T PRK14612 187 --------ELDVEAILAALARGEEPPYWN-------SLEGPVFARHPELQEVLAALRA-AGLRGVLMSGSG--STCFGLA 248 (276)
T ss_pred --------cccHHHHHHHHHhcccccccC-------CcHHHHHHhChHHHHHHHHHHh-CCCCEEEEcCcc--hhhEEEe
Confidence 012455666777777433221 2333334588999999999999 699999999998 8999999
Q ss_pred CCCc-hhhhhhhc
Q psy9976 334 SPLN-LRRGRKKK 345 (349)
Q Consensus 334 ~~~~-~~~~~~~~ 345 (349)
+++. ++++.+.+
T Consensus 249 ~~~~~a~~~~~~l 261 (276)
T PRK14612 249 EDAAQAQRAAAAL 261 (276)
T ss_pred CCHHHHHHHHHHh
Confidence 8643 55555543
|
|
| >TIGR00144 beta_RFAP_syn beta-RFAP synthase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-18 Score=161.04 Aligned_cols=237 Identities=17% Similarity=0.167 Sum_probs=156.1
Q ss_pred cccc-eEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q psy9976 28 VRQV-VTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILSSV 106 (349)
Q Consensus 28 Ai~~-~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~i~s~i 106 (349)
|||- ++++.+++.++..+++.+... . .++ ...-.|.+..++..+.+.... .|++++|.++|
T Consensus 30 al~~~~~~v~v~~~~~~~v~~~~~~g-----~----~l~--------~~~~~n~~~~~~~~~~~~~g~-~~~~i~i~~~I 91 (324)
T TIGR00144 30 ALEEPEIVIGLKESDDMGVEFTSHAE-----G----KLG--------EEYRRSRIMEAARKTLKHIGS-EGFHFTVRSMF 91 (324)
T ss_pred EEeCCcEEEEEEECCCceEEeccccc-----c----ccc--------chhHHHHHHHHHHHHHHHhCC-CCEEEEEeecC
Confidence 6665 788888887776665554321 0 111 112246676666655443222 59999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEec----C----
Q psy9976 107 PMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDC----K---- 178 (349)
Q Consensus 107 P~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~----~---- 178 (349)
|+++|||||||..+|.+.|++++++.++ +++++++++.+. .++|. |.+++.+|| ++ ++. .
T Consensus 92 P~~~GLGSsaa~avA~~~a~~~l~~~~l-s~~el~~~a~~g------e~s~~-~va~~~~GG---~v-v~~G~~~~~~~~ 159 (324)
T TIGR00144 92 PAHSGLGSGTQLSLAVGRLVSEYYGMKF-TAREIAHIVGRG------GTSGI-GVASFEDGG---FI-VDGGHSSKEKSD 159 (324)
T ss_pred CCccCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHhCC------CCCcc-ceeeeeeCC---EE-EECCcccccccc
Confidence 9999999999999999999999999999 999999998854 44555 678899999 34 331 1
Q ss_pred -----------CCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccC
Q psy9976 179 -----------THEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLL 247 (349)
Q Consensus 179 -----------~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l 247 (349)
+..+.+ ++. |+|+++++.|+.+ +|.+. | ..++|.+. ..++.++
T Consensus 160 ~~~~~~~~~~~~~~~~r--~~~-p~~~~vlviP~~~-~t~~a----r------e~~~lp~~--~~i~~~d---------- 213 (324)
T TIGR00144 160 FLPSSASSAKPAPVIAR--YDF-PDWNIILAIPEID-SVSGR----R------EVNIFQKY--CPVPLRD---------- 213 (324)
T ss_pred cCcccccCCCCCCeEEe--cCC-CCcEEEEEecCCC-CCCcH----H------HHHHHHhc--CCCCHHH----------
Confidence 011222 333 5899999999977 55432 1 12234321 1122221
Q ss_pred CHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhhhccc--CCCChhHHHHHHHHHcCCCCeEEEeccc
Q psy9976 248 SDEEYKRGHHVVTEIDRT--YKGANALKEGDFETFGKLMNESHDSLRDDY--EVSCKELDDIAHCAQSLPGVLGCRMTGG 323 (349)
Q Consensus 248 ~~~~~~r~~~~i~e~~rv--~~~~~al~~~d~~~lg~lm~~s~~~lr~~~--~vs~p~ld~l~~~a~~~~Ga~gakltGa 323 (349)
. .+..|+ .++..+|.++|++.|++.|++-+..--+.. +.-.|.+..+++.+.+ ++|+-|||+
T Consensus 214 ----v-------~~~~~~~l~~l~~al~~~d~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~---a~g~~iSGs 279 (324)
T TIGR00144 214 ----V-------ERICHLILMKMMPAVVEGDLDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS---APGAGMSSF 279 (324)
T ss_pred ----H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh---ccCceecCC
Confidence 1 222232 556999999999999999986443210101 1236677777777654 488999876
Q ss_pred CccceeEEEeCCC
Q psy9976 324 GFGGCAIALVSPL 336 (349)
Q Consensus 324 G~GG~~i~l~~~~ 336 (349)
| +++++|++++
T Consensus 280 G--PTv~al~~~~ 290 (324)
T TIGR00144 280 G--PTVYAVTDEK 290 (324)
T ss_pred C--CeEEEEecCc
Confidence 5 9999999864
|
This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens. |
| >PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=166.25 Aligned_cols=191 Identities=17% Similarity=0.152 Sum_probs=131.1
Q ss_pred CHhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCC
Q psy9976 76 KWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVP 155 (349)
Q Consensus 76 ~w~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~ 155 (349)
.|.|++..++..+.+......|+++.|.++||+++|||||||.++|++.+++++++.++ ++++++++|.++|.
T Consensus 66 ~~~N~v~~a~~~l~~~~~~~~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~l-s~~el~~la~~iga------ 138 (271)
T PRK00343 66 EEDNLIVRAARLLQKATGTPLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGL-SRDELAELGLKLGA------ 138 (271)
T ss_pred CcccHHHHHHHHHHHHhCCCCCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCC------
Confidence 46799999999887754444699999999999999999999999999999999999999 99999999988743
Q ss_pred ChhhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCH
Q psy9976 156 CGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSL 235 (349)
Q Consensus 156 ~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~ 235 (349)
|..+++.|+ ..+....+..+++++. +...++|++|+.+.+|. ..|+. . .+.+ ..
T Consensus 139 ----Dvp~~l~g~---~~~~~g~g~~~~~l~~---~~~~~vl~~p~~~~sT~-~~~~~-~--------~~~~----~~-- 192 (271)
T PRK00343 139 ----DVPVFVRGH---AAFAEGIGEILTPVDL---PEKWYLVVKPGVHISTA-EIFSD-P--------DLTR----DT-- 192 (271)
T ss_pred ----CceEEecCC---cEEEEecCCEEEECCC---CCcEEEEEeCCCCcChH-HHHhh-h--------hhcc----CC--
Confidence 655555554 3444444445566543 34557889999988764 33311 0 0000 00
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCC
Q psy9976 236 KSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGV 315 (349)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga 315 (349)
+.. . ...+......+|++.... --.|+++.+.+.+.+ .|+
T Consensus 193 ------------~~~-------~------~~~~~~~~~~Ndle~~~~--------------~~~P~~~~~~~~l~~-~ga 232 (271)
T PRK00343 193 ------------PKI-------S------IADFLAGPFRNDCEPVVR--------------KRYPEVAQALSWLLE-YAP 232 (271)
T ss_pred ------------Chh-------h------HHHHHhccccCCHHHHHH--------------HhChHHHHHHHHHHh-CCC
Confidence 100 0 011111112345555431 257889999999988 587
Q ss_pred eEEEecccCccceeEEEeCCCc-hhhhhh
Q psy9976 316 LGCRMTGGGFGGCAIALVSPLN-LRRGRK 343 (349)
Q Consensus 316 ~gakltGaG~GG~~i~l~~~~~-~~~~~~ 343 (349)
+.|||+| .++++|++++. ++++.+
T Consensus 233 --~~mSGSG--~tvF~l~~~~~~a~~~~~ 257 (271)
T PRK00343 233 --SRMTGTG--ACVFAEFDTEAEAEQVLA 257 (271)
T ss_pred --eEEeccc--cceEEEcCCHHHHHHHHH
Confidence 8899998 99999998743 444443
|
|
| >PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=159.00 Aligned_cols=201 Identities=14% Similarity=0.172 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCCh
Q psy9976 78 ANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCG 157 (349)
Q Consensus 78 ~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G 157 (349)
.|++..++..+.+.....+|++|+|.++||+++|||||||.++|++.+++++++ + +.+++.+++.++ |
T Consensus 65 ~Nlv~kA~~~l~~~~~~~~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--l-s~~~l~~ia~~l---------G 132 (283)
T PRK14610 65 NNTVQRAIGLLLRHSPVRTNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--I-DEQILNELALSV---------G 132 (283)
T ss_pred CcHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--C-CHHHHHHHHHHh---------C
Confidence 589988888876654434599999999999999999999999999999999996 6 889999998874 5
Q ss_pred hhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeC-CCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHH
Q psy9976 158 IMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINS-NVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236 (349)
Q Consensus 158 ~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s-~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~ 236 (349)
. |...+++|| ..+....+..+++++....+. .++|+.+ ++..+| ...|.. +... ...
T Consensus 133 a-DvPffl~g~---~a~~~G~Ge~l~~l~~~~~~~-~~vl~~p~~~~~sT-~~vy~~-----------~~~~---~~~-- 190 (283)
T PRK14610 133 S-DVPACLDSK---TLFVRGIGEDILLLPDLSLPT-YVVLVAPKGKFLST-RKVFNK-----------YECK---AFS-- 190 (283)
T ss_pred C-CCcEEEECC---eEEEEecccEEEECcccCCCC-eEEEEECCCCccCh-HHHHHh-----------hccc---ccC--
Confidence 4 999999997 456776677777775311133 4777777 566665 344421 1100 000
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCe
Q psy9976 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316 (349)
Q Consensus 237 ~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~ 316 (349)
+.. .. . .+..+++.. ++...++.++...--.+|+++++.+..++..|++
T Consensus 191 -----------~~~--~~-~--------------~~~~~~~~~---~~~~~~Ndle~~~~~l~P~l~~~~~~l~~~~ga~ 239 (283)
T PRK14610 191 -----------EPI--DN-L--------------PVAQDDLLE---LLKEARNDLLETAISLVPEIEEILFVLESLEGCI 239 (283)
T ss_pred -----------Ccc--cc-c--------------ccchhHHHH---HHHHhcCchHHHHHHhChHHHHHHHHHHhcCCCc
Confidence 000 00 0 011112221 1222244444311225899999999887534889
Q ss_pred EEEecccCccceeEEEeCC-Cchhhhhhhc
Q psy9976 317 GCRMTGGGFGGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 317 gakltGaG~GG~~i~l~~~-~~~~~~~~~~ 345 (349)
++.|||+| .|+++++++ +.++++.+.+
T Consensus 240 ~a~mSGSG--sTvf~l~~~~~~a~~~~~~l 267 (283)
T PRK14610 240 LSRMSGSG--ATCFALFEEEEAAEAAARYL 267 (283)
T ss_pred eEEEeCcc--cceeEEeCCHHHHHHHHHHh
Confidence 99999998 899999976 4556665554
|
|
| >PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.8e-18 Score=155.61 Aligned_cols=163 Identities=11% Similarity=0.064 Sum_probs=115.5
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcc--cCC--CCCcCHhHHHHHHHHHHHhcCCCCCceEEEEE
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ--KLT--PGAPKWANYVKGVVSIFNDRVAPVPGFNAVIL 103 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~--~l~--~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~i~ 103 (349)
-||++..|.. +|+|+.+.|.|....++-.+.+++...+.. .+. +..+.-.|++..++..+.+......|++|.+.
T Consensus 8 KINL~L~V~g-kR~DGYH~l~sl~~~i~l~D~l~i~~~~~~~i~i~~~~~~~~~~Nlv~ra~~~l~~~~g~~~~v~I~i~ 86 (288)
T PRK00650 8 KLNLFLQLLG-KREDGFHEIVTRYQAIAFGDQLSLSISSRDSLQVINACHLETPSNSIWKSVALFRRYTGITTPVSWRVV 86 (288)
T ss_pred eEEeeeccCC-cCCCCCcceeEEEEEcCCCCEEEEEECCCCcEEEeCCCCCCccccHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 6777766663 567777777776543443455555421110 010 00011258998888887765333458999999
Q ss_pred eCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCeeE
Q psy9976 104 SSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEAR 183 (349)
Q Consensus 104 s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~~ 183 (349)
++||+++|||||||..+|++.+++++++.++ +++++.+++.++|- |...++.|| ..+....+..++
T Consensus 87 K~IP~gaGLGggSS~aAa~L~~ln~l~~~~l-s~~eL~~lA~~lGa----------DvPffl~~g---~a~~~G~Ge~l~ 152 (288)
T PRK00650 87 KQIPIGAGLAGGSSNAATALFALNQIFQTGL-SDEELRSLAEKIGM----------DTPFFFSTG---SALGVGRGEKII 152 (288)
T ss_pred eCCCCcCCcCcchhHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCC----------cchhhhcCc---eEEEEecCCEEE
Confidence 9999999999999999999999999999999 99999999998853 888888876 444444455667
Q ss_pred EeeCCCCCCeEEEEEeCCCCcccC
Q psy9976 184 HIPLGDDHQYVFLIINSNVHHELS 207 (349)
Q Consensus 184 ~l~~~~~~~~~~ll~~s~~~~~~~ 207 (349)
+++.+ ++..++++.|++..+|.
T Consensus 153 ~~~~~--~~~~~vlv~P~~~vsT~ 174 (288)
T PRK00650 153 ALEES--VSDRYVLYFSSEGVLTS 174 (288)
T ss_pred ECcCC--CCceEEEEeCCCCCChH
Confidence 76543 45678999999887764
|
|
| >COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-17 Score=148.78 Aligned_cols=251 Identities=15% Similarity=0.136 Sum_probs=162.6
Q ss_pred ecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCC-cc--cCC---CCCcCHhHHHHHHHHHHHhcCCCCCce
Q psy9976 25 MMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPK-VQ--KLT---PGAPKWANYVKGVVSIFNDRVAPVPGF 98 (349)
Q Consensus 25 ~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~-~~--~l~---~~~~~w~~~v~~~~~~l~~~~~~~~g~ 98 (349)
|+ -||++..|.. +|+|+++.|.+...-++..+++++..-+ +. ... ..-+.-.|++..+...|++......|+
T Consensus 9 pA-KiNL~L~V~g-kr~DGYHel~sl~~~id~~D~l~i~~~~~~~~~~~~~~~~~lp~~~NLv~rAa~ll~~~~~~~~~v 86 (289)
T COG1947 9 PA-KINLFLHVTG-KRADGYHELETLFQFIDLGDELTIRPRDDDGFIVLGTFADGLPTDENLVYRAAELLRKRTGIAGGV 86 (289)
T ss_pred cc-eEEEEEEecc-cCCCCceeeEEEEEEeccCCEEEEEECCCCCceEecCCCCCCCCcchHHHHHHHHHHHHhCCCCCe
Confidence 45 7888888874 6678888888874333334555554332 11 000 011111289999999888766566789
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecC
Q psy9976 99 NAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCK 178 (349)
Q Consensus 99 ~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~ 178 (349)
+|+|+++||+++|||+.||.++|++.+|+++|+.++ +.++|.+++.++ |. |...|++|| .-+....
T Consensus 87 ~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~l-s~~eL~~Lg~~L---------Ga-DVPffl~g~---tA~a~G~ 152 (289)
T COG1947 87 SIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGL-SLEELAELGLRL---------GA-DVPFFLSGG---TAFAEGR 152 (289)
T ss_pred eEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHh---------CC-CcCeeeeCC---ceEEEEc
Confidence 999999999999999999999999999999999999 999999999987 44 999999987 4455666
Q ss_pred CCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHH
Q psy9976 179 THEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHV 258 (349)
Q Consensus 179 ~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~ 258 (349)
+..+++++-+ +...++++++++..+|. ..|. ...+...+ ..+
T Consensus 153 GE~l~~~~~~--~~~~~vl~~P~v~vsT~-~vy~--------------~~~~~~~~-----------~~~---------- 194 (289)
T COG1947 153 GEKLEPLEDP--PEKWYVLAKPGVGVSTK-EVYK--------------DPELTRNT-----------PKS---------- 194 (289)
T ss_pred cceeeECCCC--CCceEEEEeCCCCCChH-HHHc--------------CcCccccc-----------CCc----------
Confidence 7777776532 46778999998877764 3332 10000000 000
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCc-
Q psy9976 259 VTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLN- 337 (349)
Q Consensus 259 i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~- 337 (349)
.....++...++..+.+.. ++.|+..---..|+++.......+ .|+.+++|||+| .|++++++.+.
T Consensus 195 -------~~~~~~~~~~~~~~~~~~~---~NdLe~~~~~~~p~v~~~~~~l~~-~ga~~~~mSGSG--stvF~l~~~~~~ 261 (289)
T COG1947 195 -------EPLIAALSLENLKQIAPFL---INDLEKVALRLYPEVKEALSELLE-YGALPARMSGSG--STVFALFDTEKE 261 (289)
T ss_pred -------hhhhHHHhhhhHhhhcccc---ccchHHHHHHhChHHHHHHHHHhh-cccccceEecCC--CcEEEEeCChHH
Confidence 0111111112222221111 112222111245778886666776 488999999998 99999998865
Q ss_pred hhhhh
Q psy9976 338 LRRGR 342 (349)
Q Consensus 338 ~~~~~ 342 (349)
++++-
T Consensus 262 a~~~~ 266 (289)
T COG1947 262 AQRVA 266 (289)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK05905 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=139.44 Aligned_cols=163 Identities=12% Similarity=0.109 Sum_probs=114.3
Q ss_pred cccceEEEEEEecC-CCeEEEEecCCCC-CCCCceEEeCCCc---c-cCC---CC-CcCHhHHHH-HHHHHHHhcCCCCC
Q psy9976 28 VRQVVTVLLGSRNN-SNQIHLHSDSARA-DKPTDISFDIPKV---Q-KLT---PG-APKWANYVK-GVVSIFNDRVAPVP 96 (349)
Q Consensus 28 Ai~~~~~v~~~~~~-d~~i~v~s~~~~~-~~~~~~~~~l~~~---~-~l~---~~-~~~w~~~v~-~~~~~l~~~~~~~~ 96 (349)
-||++..|.. +|+ |+++.|.|....+ +-.+++++...+. . .+. .. ... .|.+. .++..+.+.....+
T Consensus 8 KINL~L~I~g-kR~DdGYHel~sv~~~i~~l~D~l~i~~~~~~~~~i~~~~~~~~~~~~-~nli~~ka~~~l~~~~~~~~ 85 (258)
T PRK05905 8 KINLGLSIYK-KCKKVTKHKLESIFILVENVYDDIEIEKIEKNIDDIHYFDETNEILVY-SRLILVKTLEWLRDKYNIKN 85 (258)
T ss_pred eEEeeeeecc-cCCCCCCcceeEEEEEccccccEEEEEECCCCCceEEEeCCCcCCCCC-cchHHHHHHHHHHHHhCCCC
Confidence 6777777763 556 4777777775444 3345555542211 0 000 00 112 57776 88887766544346
Q ss_pred ceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhc-cCCeEEEE
Q psy9976 97 GFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMG-EEGSALLI 175 (349)
Q Consensus 97 g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~g-g~~~~~~~ 175 (349)
|++|.+.++||.++||||+||.++|++.+|+++++ + +.+++.+++.++ |. |...+++| + ..+.
T Consensus 86 ~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--l-s~~~L~~ia~~l---------GA-DVPFfl~g~~---~a~~ 149 (258)
T PRK05905 86 HFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--I-NEINYKDVVNKL---------GS-DIPFFLSGYK---TAYI 149 (258)
T ss_pred CeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--C-CHHHHHHHHHHh---------CC-CcceEEeCCc---cEEE
Confidence 89999999999999999999999999999999997 5 889999998876 44 99999999 6 3455
Q ss_pred ecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhH
Q psy9976 176 DCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEY 211 (349)
Q Consensus 176 d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y 211 (349)
...+..+++++.+ +...++|+++++..+|. ..|
T Consensus 150 ~G~GE~l~pl~~~--~~~~~vlv~P~~~vST~-~vY 182 (258)
T PRK05905 150 SDYGSQVEDLIGQ--FKLTYKVIFMNVNVSTK-KVF 182 (258)
T ss_pred EeeCceeEECCCC--CCceEEEECCCCCCCHH-HHH
Confidence 6566677887543 24568999999888764 444
|
|
| >PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-16 Score=113.42 Aligned_cols=67 Identities=40% Similarity=0.450 Sum_probs=63.3
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhcc
Q psy9976 99 NAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGE 168 (349)
Q Consensus 99 ~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg 168 (349)
+|+++|+||+++|||||||+++|++.+++++++.++ ++++++++++.+|+.+ |.|+|. |+++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~-~~~~l~~~a~~~e~~~-g~~~g~-d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPL-SKEELAKLAQEAERYI-GKPSGI-DDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSS-BHHHHHHHHHHHHHHC-SSSHSH-HHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccc-cHHHHHHHHHHHHHHc-CCCChh-hHHHHHhCc
Confidence 589999999999999999999999999999999999 9999999999999877 999777 779999997
|
7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A .... |
| >TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-13 Score=129.55 Aligned_cols=218 Identities=16% Similarity=0.155 Sum_probs=140.7
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCCh
Q psy9976 78 ANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCG 157 (349)
Q Consensus 78 ~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G 157 (349)
.+.+..++..+++......+++|.+.+++|.++|||||||..+|++.|++++++.++ ++.++.+++.+.| |..|+
T Consensus 66 ~~~v~~~l~~~~~~~~~~~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l-~~~eL~~lA~~gs----Gsa~~ 140 (305)
T TIGR01240 66 NEKTSNCLDDFRQLRKEQEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPL-DTSELSRIARKGS----GSACR 140 (305)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhc----CCeee
Confidence 357788888887765555689999999999999999999999999999999999999 9999999999876 44444
Q ss_pred hhHHHHHHhccCCeEEEEecC----CCeeEEeeCCCC-CCeE-EEEEeCCCCccc-ChhhHHHHHHHHHHHHHHhchhcc
Q psy9976 158 IMDQYVSVMGEEGSALLIDCK----THEARHIPLGDD-HQYV-FLIINSNVHHEL-SSSEYAVRRAQCKSVLDKLHRVSF 230 (349)
Q Consensus 158 ~~D~~a~~~gg~~~~~~~d~~----~~~~~~l~~~~~-~~~~-~ll~~s~~~~~~-~~~~y~~r~~~~~~a~~~l~~~~l 230 (349)
++||| ++..+.. +....++|.+.. ++++ ++++.+..+... .+. .+...+..
T Consensus 141 ------s~~GG---~v~~~~g~~~~~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt~----------gm~~~~~t--- 198 (305)
T TIGR01240 141 ------SLFGG---YVAWEKGKDDHSSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSRQ----------GMQLTVAT--- 198 (305)
T ss_pred ------eeecC---eEEEEcCCCCCCeeEEECCCccccccceEEEEEcCCCCCCCCCHH----------HHHHhhhc---
Confidence 78999 4555431 122344433311 2333 334444443321 111 01111110
Q ss_pred CCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-------cCCCChhHH
Q psy9976 231 RDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD-------YEVSCKELD 303 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-------~~vs~p~ld 303 (349)
++....+..+ ..+ +..++++||.++|++.||++...+-..+... +-.-+|+--
T Consensus 199 -----------------s~~~~~~v~~-~~~--~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~ 258 (305)
T TIGR01240 199 -----------------SELFKEWIEH-VVP--DFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSK 258 (305)
T ss_pred -----------------CccHHHHHHH-HHH--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHH
Confidence 1111122222 111 3789999999999999999887665554432 122334433
Q ss_pred H---HHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 304 D---IAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 304 ~---l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
. +++..++ .|...+-..-|| +.+..|++++..+++.+.+
T Consensus 259 ~ii~~v~~~r~-~g~~~~~T~DAG--pNv~vl~~~~~~~~v~~~~ 300 (305)
T TIGR01240 259 RAMSAVHTLRQ-GGTICYFTMDAG--PNVKVLYLAENLSKLFEFI 300 (305)
T ss_pred HHHHHHHHHHh-CCCcEEEEEcCC--CCEEEEEccccHHHHHHHH
Confidence 3 4444566 476666666676 9999999999988876643
|
Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase |
| >PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-15 Score=135.99 Aligned_cols=164 Identities=16% Similarity=0.156 Sum_probs=114.3
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCC-CCCCceEEeCCCcc--cCCCC--CcCHhHHHHHHHHHHHhc--CC----CCC
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARA-DKPTDISFDIPKVQ--KLTPG--APKWANYVKGVVSIFNDR--VA----PVP 96 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~-~~~~~~~~~l~~~~--~l~~~--~~~w~~~v~~~~~~l~~~--~~----~~~ 96 (349)
-||++..|.. +| |+.+.|.|....+ +-.+++++...... .+... .+.-.|++..++..+.+. +. ..+
T Consensus 8 KINL~L~v~~-kr-dGyH~l~s~~~~i~~l~D~l~i~~~~~~~~~i~~~~~~p~~~NLv~kA~~~l~~~~~~~~~~~~~~ 85 (257)
T PRK04181 8 KVNIFLKILG-KR-GNYHELISRFVLVKDLFDEIEFVPKSAESFELIGNFDCPLEENIIYKAYQELKNKGFSNELIEFFK 85 (257)
T ss_pred eEEEEEeeCc-CC-CCCceeheeeeEccCcCcEEEEEECCCCCEEEEcCCCCCCCCcHHHHHHHHHHHhccccccccCCC
Confidence 6777766664 45 7777777765444 33445555421100 01000 001258888888877652 21 125
Q ss_pred ceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhc-cCCeEEEE
Q psy9976 97 GFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMG-EEGSALLI 175 (349)
Q Consensus 97 g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~g-g~~~~~~~ 175 (349)
|++|.+.++||+++|||||||.++|++.+++++++.++ +++++.+++.++ |. |...+++| + ..+.
T Consensus 86 gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~l-s~~eL~~lA~~l---------Ga-DvPffl~~~~---~a~~ 151 (257)
T PRK04181 86 KKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKL-SLEELAEIGSKV---------GA-DVAFFISGYK---SANV 151 (257)
T ss_pred ceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHh---------CC-CccEEecCCc---eEEE
Confidence 89999999999999999999999999999999999999 999999999876 44 99999998 5 4455
Q ss_pred ecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhH
Q psy9976 176 DCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEY 211 (349)
Q Consensus 176 d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y 211 (349)
...+..+++++.+ +. .++|+++++..+|. ..|
T Consensus 152 ~G~Ge~l~~l~~~--~~-~~~lv~P~~~vsT~-~vy 183 (257)
T PRK04181 152 SGIGEIVEEFEEE--IL-NLEIFTPNIFCSTK-AVY 183 (257)
T ss_pred EeeCCeeEECCCC--CC-eEEEECCCCCcCHH-HHH
Confidence 6566677877532 23 38899999888764 455
|
|
| >COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-13 Score=119.81 Aligned_cols=197 Identities=18% Similarity=0.162 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCC-Ch
Q psy9976 79 NYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVP-CG 157 (349)
Q Consensus 79 ~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~-~G 157 (349)
+.+..++..+.+......|+++.++|+||.++||.||||+..|++.|+..+.+.++ ++.+++.+..++-.+. |.. .|
T Consensus 52 ~li~~~~~~v~e~~g~~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~-~~~~i~~l~a~~S~~a-GvSvTG 129 (278)
T COG1685 52 RLIERCVERVREKYGIPLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEI-DDFEILRLGARASKEA-GVSVTG 129 (278)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHhc-CceEec
Confidence 47778888777766555699999999999999999999999999999999999998 9999999888876542 432 45
Q ss_pred hh-HHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHH
Q psy9976 158 IM-DQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236 (349)
Q Consensus 158 ~~-D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~ 236 (349)
.. |..++.||| +.+.|.+...+-... +. +++..+|.-++.+..+.. ++.+
T Consensus 130 A~DDa~AS~~GG---~~iTDN~~m~Ilrr~-~~-~~~~vlI~~p~~k~~~~~------------------------vdv~ 180 (278)
T COG1685 130 AFDDACASYLGG---IVITDNRKMRILRRL-DL-PELTVLILAPGEKRLSAN------------------------VDVN 180 (278)
T ss_pred cchHHHHHHhCC---eEEecchhheehhcc-cc-CCceEEEEecCCcccccc------------------------CCHH
Confidence 44 566699998 777776665443321 22 577778877886644321 2222
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCe
Q psy9976 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316 (349)
Q Consensus 237 ~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~ 316 (349)
.++ +..+++ +.+.+.-.+|+|.. .|.-|.......++.... +...+.+ .|+.
T Consensus 181 ~~r--------------~~a~~~------e~A~~lA~~G~~~~---Am~lNG~~y~~aLG~~~e----~~~~ale-~GA~ 232 (278)
T COG1685 181 RLR--------------LIAPVV------EEAFRLALKGEYFK---AMVLNGILYCSALGYDLE----PALKALE-AGAA 232 (278)
T ss_pred HHH--------------HhhHHH------HHHHHHHhcccHHH---HHHHhHHHHHHHhCCChH----HHHHHHh-cccc
Confidence 221 122222 23333334577765 466666655555666552 3556777 5999
Q ss_pred EEEecccCccceeEEEeCCC
Q psy9976 317 GCRMTGGGFGGCAIALVSPL 336 (349)
Q Consensus 317 gakltGaG~GG~~i~l~~~~ 336 (349)
++-+||-| ++.++|++++
T Consensus 233 ~aglSGtG--Pa~~Al~~~~ 250 (278)
T COG1685 233 AAGLSGTG--PAYFALTEDP 250 (278)
T ss_pred eeccCCCC--CceEEEecCc
Confidence 99999876 9999999887
|
|
| >COG1907 Predicted archaeal sugar kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-13 Score=120.26 Aligned_cols=197 Identities=20% Similarity=0.273 Sum_probs=147.1
Q ss_pred CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEE
Q psy9976 96 PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLI 175 (349)
Q Consensus 96 ~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~ 175 (349)
.|++|.|.+++|...||||-..+..|+..++++++++.+ +..+++....+ |-.||+ -.++.-+|| +.+
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~-~~~elA~~vgR------G~tSgi-Gv~afe~GG----FIV 137 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLEL-SIRELAFAVGR------GGTSGI-GVYAFEYGG----FIV 137 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHcc------CCccce-eEEEEEECC----EEE
Confidence 689999999999999999999999999999999999999 98888777664 555676 567778888 345
Q ss_pred ecC--C------Ce--eEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcc
Q psy9976 176 DCK--T------HE--ARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQK 245 (349)
Q Consensus 176 d~~--~------~~--~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~ 245 (349)
|.. . .. +-...+|. +|+|+|+-|..++... +++| ..++.+ ..
T Consensus 138 DGGh~~~f~ps~~sP~I~R~dfPe--dW~~VlaIP~~~rg~~------~~~E----~~if~~----------------~~ 189 (312)
T COG1907 138 DGGHSFGFLPSSASPLIFRLDFPE--DWRFVLAIPEVERGVS------GRRE----VDIFKK----------------YC 189 (312)
T ss_pred ECCcccCcccCCCCceeeeecCCC--ceEEEEEecCCCcccc------chHH----HHHHHh----------------cC
Confidence 631 1 11 22334543 8999999999876432 1111 233321 12
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh---hc--ccCCCChhHHHHHHHHHcCCCCeEEEe
Q psy9976 246 LLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSL---RD--DYEVSCKELDDIAHCAQSLPGVLGCRM 320 (349)
Q Consensus 246 ~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~l---r~--~~~vs~p~ld~l~~~a~~~~Ga~gakl 320 (349)
.++.+..+++.|.+ ..+++.|+-++|++.||+.|++-|... -+ .-.+.|+.++.+++.+.+ + +++|-+
T Consensus 190 p~p~~~~~~ls~~v-----Lm~mmPavvE~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~-~-a~~agq 262 (312)
T COG1907 190 PVPLEEVGELSHRV-----LMKMMPAVVERDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVE-A-AYGAGQ 262 (312)
T ss_pred CCCHHHHHHHHHHH-----HHHHhHHHHhhCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHH-h-cccccc
Confidence 23545556666665 688999999999999999999988865 22 245688899999999999 5 788888
Q ss_pred cccCccceeEEEeCCCchhhh
Q psy9976 321 TGGGFGGCAIALVSPLNLRRG 341 (349)
Q Consensus 321 tGaG~GG~~i~l~~~~~~~~~ 341 (349)
| .||+++++++++....++
T Consensus 263 S--SwGPtvY~i~d~~~~~~~ 281 (312)
T COG1907 263 S--SWGPTVYGIVDSREAGSV 281 (312)
T ss_pred c--ccCCEEEEeccccccchH
Confidence 5 689999999998775543
|
|
| >COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-13 Score=117.54 Aligned_cols=192 Identities=21% Similarity=0.276 Sum_probs=141.5
Q ss_pred CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEE
Q psy9976 95 VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALL 174 (349)
Q Consensus 95 ~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~ 174 (349)
..|.++.+.|+||.|.||+||+|..||++.|+.+++|.++ +..+++++|..+|.. |- .+|-+ +++
T Consensus 81 ~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l-~es~iakLcv~iEPt---------Ds--iiF~~---~tl 145 (293)
T COG4542 81 NTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGREL-RESEIAKLCVSIEPT---------DS--IIFDK---ATL 145 (293)
T ss_pred cCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCC-CHHHHHHHHhhcCCc---------cc--eeccc---cee
Confidence 4689999999999999999999999999999999999999 999999999999954 32 23544 788
Q ss_pred EecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHH-HHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHH
Q psy9976 175 IDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAV-RRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYK 253 (349)
Q Consensus 175 ~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~-r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 253 (349)
||.+...+... ....|.+.+|++.++....|. .|+. +|.+ +.+ ++. +
T Consensus 146 Fd~r~g~~~~~-~g~~PpL~ilv~e~~~~v~T~--~y~q~~r~e-----~~~----------~~~--------------~ 193 (293)
T COG4542 146 FDQREGRVIEF-LGEMPPLHILVFEGKGTVETV--DYNQPPRGE-----KLL----------APL--------------A 193 (293)
T ss_pred ehhccchHHHh-cCCCCceEEEEEcCCCceeee--eccCCchhh-----hhh----------hhH--------------H
Confidence 88766555432 222268899999988777665 3432 2211 000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEe
Q psy9976 254 RGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333 (349)
Q Consensus 254 r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~ 333 (349)
-+.+. .+.+.+|+..+|...+|+.-..|-...++. .+-|.++.|.+.+.+. +++|--..-+ |++++|.
T Consensus 194 ----e~~~l--~~~v~~A~~~~~~~~lG~AAT~SAv~~Q~~--LPK~~~~~lL~l~e~~-~~~Gv~VAHS---GtmlGli 261 (293)
T COG4542 194 ----ELGNL--INLVEKALKVGDPKLLGEAATLSAVKNQDR--LPKPGLNELLRLVEET-CAIGVIVAHS---GTMLGLI 261 (293)
T ss_pred ----HHHHH--HHHHHHHHccCCHHHHHHHHHHHHHhhccc--cCchhHHHHHHHHHHh-cccceEEecc---CceEEee
Confidence 11111 456677899999999999999887766553 6888999999999995 7889888777 6999998
Q ss_pred CCCchhhhhhhc
Q psy9976 334 SPLNLRRGRKKK 345 (349)
Q Consensus 334 ~~~~~~~~~~~~ 345 (349)
-+........|+
T Consensus 262 ~D~~~~~d~~k~ 273 (293)
T COG4542 262 YDRKYALDPRKL 273 (293)
T ss_pred eccccccchHHH
Confidence 877644444443
|
|
| >PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-13 Score=104.53 Aligned_cols=77 Identities=34% Similarity=0.505 Sum_probs=66.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh-hhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEe-CCCchhhhhhhc
Q psy9976 268 GANALKEGDFETFGKLMNESHDS-LRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV-SPLNLRRGRKKK 345 (349)
Q Consensus 268 ~~~al~~~d~~~lg~lm~~s~~~-lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~-~~~~~~~~~~~~ 345 (349)
|++||.++|++.|+++|+++|.. ......+.+|+++.+++.+++ .|+++++|||+|||||+++|+ +.+.++++++.+
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEE-NGALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-TTESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHH-CCCCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 57899999999999999999884 222467899999999999999 699999999999999999999 557777777665
|
7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A .... |
| >COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-10 Score=101.98 Aligned_cols=178 Identities=13% Similarity=0.068 Sum_probs=103.1
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHH-HHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYV-KGVV 85 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v-~~~~ 85 (349)
|+.++|+|-+-..|+..... |++++..... +||.+.++ + -|.++ .+.....+....+ .-++
T Consensus 11 k~LlaGdYs~lv~glsahai-a~nkr~~cs~-------vrvKskds----w---lfhis---i~g~~knsfiEl~~~~Vf 72 (337)
T COG3890 11 KLLLAGDYSILVEGLSAHAI-AINKRAFCSF-------VRVKSKDS----W---LFHIS---IKGIDKNSFIELRSDFVF 72 (337)
T ss_pred ceEEeccceeeeecceeeEE-Eeccccccce-------eEeccCce----E---EEEee---ecccCCChHHHHHHHHHH
Confidence 67789999888778776666 7777644332 45555442 0 11111 0111112221111 1234
Q ss_pred HHHHhc-CCCCCceEEE----EE--eC-CCC---CCCCChHHHHHHHHH--HHHHHhhCCCCCCHHHHHHHHHHHHHhhc
Q psy9976 86 SIFNDR-VAPVPGFNAV----IL--SS-VPM---GSGLSSSAALEVATY--TFLESITDEKTLKLTDKALACQEAEHSFA 152 (349)
Q Consensus 86 ~~l~~~-~~~~~g~~i~----i~--s~-iP~---g~GLgSSaA~~vA~~--~al~~~~~~~~~~~~~l~~~a~~~E~~~~ 152 (349)
.+|... ..-..++++. .. ++ +|. ..|||||||+++.+. ..+.+..+.++..+.++.++|+.+...-+
T Consensus 73 ~yF~~~~~~c~qnlev~~ddayy~q~~f~~d~g~KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQ 152 (337)
T COG3890 73 KYFAYLSQNCFQNLEVFADDAYYDQSNFFFDDGTKTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQ 152 (337)
T ss_pred HHHHhhhhhccccceeecchhhcccccceecCCccCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHh
Confidence 444322 1112233333 11 11 222 699999999999987 33344355566235899999999988877
Q ss_pred CC-CChhhHHHHHHhccCCeEEEEecCCCeeEEee-C---CCCCCeEEEEEeCCCCcccC
Q psy9976 153 GV-PCGIMDQYVSVMGEEGSALLIDCKTHEARHIP-L---GDDHQYVFLIINSNVHHELS 207 (349)
Q Consensus 153 G~-~~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~-~---~~~~~~~~ll~~s~~~~~~~ 207 (349)
|. .||. |.++++||+ +++-+|.+.-...++ + +. .++.++..+.....+|.
T Consensus 153 ggIGSGf-DiaaA~fGs---iiyrRF~p~li~~l~qig~~nf-g~y~LmmGd~a~gSeTv 207 (337)
T COG3890 153 GGIGSGF-DIAAAIFGS---IIYRRFEPGLIPKLRQIGAVNF-GDYYLMMGDQAIGSETV 207 (337)
T ss_pred CCCCccc-hhhHhhhcc---eEEeecCcchhhhhHhhCcccc-cCeeeeecccccCccch
Confidence 65 4555 999999998 777667664333331 1 11 47888888888766654
|
|
| >PLN02407 diphosphomevalonate decarboxylase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-09 Score=103.03 Aligned_cols=198 Identities=18% Similarity=0.174 Sum_probs=120.9
Q ss_pred eEEEEEe--CCCCCCCCChHHHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEE
Q psy9976 98 FNAVILS--SVPMGSGLSSSAALEVATYTFLESITDEKTLK-LTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALL 174 (349)
Q Consensus 98 ~~i~i~s--~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~-~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~ 174 (349)
+++.|.| ++|.++||+||||..+|++.|+..+++.++ + +.++..+|. +| ||. |.- ++||| ++.
T Consensus 104 ~~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~-~~~~~ls~lAr------~G--SGS-a~r-S~~Gg---~v~ 169 (343)
T PLN02407 104 LHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKE-DFPGELSAIAR------QG--SGS-ACR-SLYGG---FVK 169 (343)
T ss_pred ccEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHh------cc--ChH-HHH-HhhCC---eEE
Confidence 3677777 999999999999999999999999999998 8 889888888 35 665 655 99999 566
Q ss_pred EecCC----CeeEEeeCCCC---CCeEE--EEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcc
Q psy9976 175 IDCKT----HEARHIPLGDD---HQYVF--LIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQK 245 (349)
Q Consensus 175 ~d~~~----~~~~~l~~~~~---~~~~~--ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~ 245 (349)
..... ...-..|++.. |++++ +|++.+.+.-..+. +.+.- +
T Consensus 170 w~~G~~~d~~ds~A~~i~~~~~~~dl~~~i~vv~~~~K~vsSt~-----------GM~~t---------------v---- 219 (343)
T PLN02407 170 WNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTS-----------GMRES---------------V---- 219 (343)
T ss_pred ecCCCCCCCCceeEEECCCccCCccceEEEEEEcCCcCCCCchH-----------HHHHh---------------h----
Confidence 65331 12222333221 34553 33444432211111 00000 0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-------cCCCChhHH---HHHHHHHcCCCC
Q psy9976 246 LLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD-------YEVSCKELD---DIAHCAQSLPGV 315 (349)
Q Consensus 246 ~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-------~~vs~p~ld---~l~~~a~~~~Ga 315 (349)
.-++-.-.|..+++. ++..++.+||+++|+..||++.-.+-..+... +-..+|+-- .+++..++..|.
T Consensus 220 ~TSp~~~~w~~~~~~--~~~~~~~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~ 297 (343)
T PLN02407 220 ETSPLLQHRAKEVVP--KRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGT 297 (343)
T ss_pred hcChhHHHHHHhhhH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCC
Confidence 002222233333222 24789999999999999999987665554432 111234333 344444442253
Q ss_pred -eEEEecccCccceeEEEeCCCchhh-hhh
Q psy9976 316 -LGCRMTGGGFGGCAIALVSPLNLRR-GRK 343 (349)
Q Consensus 316 -~gakltGaG~GG~~i~l~~~~~~~~-~~~ 343 (349)
-.+--.-|| +.+..|++++..++ +.+
T Consensus 298 ~~v~yT~DAG--PNv~vl~~~~~~~~~v~~ 325 (343)
T PLN02407 298 PQVAYTFDAG--PNAVLIALNRKVAAQLLQ 325 (343)
T ss_pred ccEEEEecCC--CCEEEEEChhhhHHHHHH
Confidence 355566676 88999999888776 653
|
|
| >COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-09 Score=99.42 Aligned_cols=219 Identities=17% Similarity=0.088 Sum_probs=136.2
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCCh
Q psy9976 78 ANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCG 157 (349)
Q Consensus 78 ~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G 157 (349)
...++.+++.+++....-..+.|...++.|-++||+||||..+|+..|+..+++.++ |..++-++|+.+ ..|+
T Consensus 71 ~~k~~~~ld~~R~~~~~~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~-d~~~lS~~AR~g------SGSa 143 (329)
T COG3407 71 NEKARRVLDRFRKEYGISFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDL-DDEFLSRIARLG------SGSA 143 (329)
T ss_pred HHHHHHHHHHHHHhhcccceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCC-CHHHHHHHHHHh------ccch
Confidence 467899999998644434578889999999999999999999999999999999999 999999998864 2222
Q ss_pred hhHHHHHHhccCCeEEEEecCC-Cee-----EEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccC
Q psy9976 158 IMDQYVSVMGEEGSALLIDCKT-HEA-----RHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFR 231 (349)
Q Consensus 158 ~~D~~a~~~gg~~~~~~~d~~~-~~~-----~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~ 231 (349)
.-++||| ++.-+..+ ..+ .+.+++.+...-++++.+..+.-..+... +.-
T Consensus 144 ----~RS~~Gg---~~~W~~~~g~~~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm-----------~~~------ 199 (329)
T COG3407 144 ----SRSIFGG---FVLWEKGEGEDSAAEQLFRLDLWKELAMIVLVISPKKKKVSSREGM-----------QLT------ 199 (329)
T ss_pred ----hhhhcCC---eeEeccCCCCccceeeeccccCccccceEEEEEccccCCCCchHHH-----------HHH------
Confidence 2378999 44444222 111 22233321234456556555443221111 100
Q ss_pred CCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-c------CCCChhHHH
Q psy9976 232 DVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD-Y------EVSCKELDD 304 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-~------~vs~p~ld~ 304 (349)
.. + ++..-.|..|.. +. ..++..+++++|++.|+++..++-..+... + -+-+++--.
T Consensus 200 --------~~--t---S~~y~~w~~~~~-~~--~~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ 263 (329)
T COG3407 200 --------AE--T---SPFYDAWLEHSE-ED--LEEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLR 263 (329)
T ss_pred --------HH--c---ChHHHHHHHHHH-Hh--HHHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHH
Confidence 00 0 222223333332 22 378899999999999999887665544331 1 223445445
Q ss_pred HHHHHHcC--CCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 305 IAHCAQSL--PGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 305 l~~~a~~~--~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
+++..+++ .|-..+-..-|| +.+..++..+..+++.+.+
T Consensus 264 ii~~v~~~r~~g~~~~fT~DaG--PnV~v~~~~~~l~~~~~~~ 304 (329)
T COG3407 264 IIEFVHELRKEGNAVYFTMDAG--PNVKVITLEENLIDLLEIL 304 (329)
T ss_pred HHHHHHHHHhcCCceEEEEcCC--CceEEEEecccHHHHHHHH
Confidence 55544443 132334444444 9999999999888876654
|
|
| >KOG4644|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-10 Score=109.12 Aligned_cols=210 Identities=16% Similarity=0.184 Sum_probs=136.4
Q ss_pred CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHH----HHHHHHHHHHhhcCCCChhhHHHHHHhccCC
Q psy9976 95 VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTD----KALACQEAEHSFAGVPCGIMDQYVSVMGEEG 170 (349)
Q Consensus 95 ~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~----l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~ 170 (349)
..||++...|++|-|+|||.||-+....+.|+....+.-. ..+. +..-..+.|+ ++...+|+|||...++-|..
T Consensus 689 ~~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~-gTeaLiHailHtvlrlEQ-ilTTGGGWQDQ~G~im~GIK 766 (948)
T KOG4644|consen 689 CCGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRAD-GTEALIHAILHTVLRLEQ-ILTTGGGWQDQCGAIMEGIK 766 (948)
T ss_pred cCceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhcccc-chhHhHHHHHHHHHHHHH-HhhcCCchhhhccchhhhhh
Confidence 4699999999999999999999999888889888877654 4333 3444446777 45677899999998888732
Q ss_pred eE-EEEe-cCCCeeEEeeCCC----CCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhc
Q psy9976 171 SA-LLID-CKTHEARHIPLGD----DHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQ 244 (349)
Q Consensus 171 ~~-~~~d-~~~~~~~~l~~~~----~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~ 244 (349)
.. .+.+ ..+.+++++.+|. +-+-++++++||.++ .|..+|+. .+| .-+.+.
T Consensus 767 ~gr~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKTR---------------LAkNLLQd-ViR----n~far~--- 823 (948)
T KOG4644|consen 767 KGRCRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKTR---------------LAKNLLQD-VIR----NFFARC--- 823 (948)
T ss_pred hccchhhccCCceeeeecCCHHHHHHHhhcEEEEEeCchH---------------HHHHHHHH-HHH----HHHHhh---
Confidence 11 1111 1133456666654 123368999999754 22334431 011 111100
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc-ccCCCChhHHHHHHHHHc-CCCCeEEEecc
Q psy9976 245 KLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRD-DYEVSCKELDDIAHCAQS-LPGVLGCRMTG 322 (349)
Q Consensus 245 ~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~-~~~vs~p~ld~l~~~a~~-~~Ga~gakltG 322 (349)
+ . .+.-.|-+.|. +.++.+.+++|..+.+|+++...|...+- .-++..+...+|++.... ..| -.+-..|
T Consensus 824 ---~-a-~~Q~ah~l~~~--tdecAegf~kGsl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hg-esgw~AG 895 (948)
T KOG4644|consen 824 ---K-A-TKQKAHKLAEA--TDECAEGFEKGSLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHG-ESGWAAG 895 (948)
T ss_pred ---H-H-HHHHHHHHHHH--HHHHHHHHhcCcHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhcccccc-ccchhcc
Confidence 1 1 11222334444 89999999999999999999988876533 235666677777776543 123 2334889
Q ss_pred cCccceeEEEeCCCc
Q psy9976 323 GGFGGCAIALVSPLN 337 (349)
Q Consensus 323 aG~GG~~i~l~~~~~ 337 (349)
||+||+++.+.+...
T Consensus 896 AGGGGFiYLl~kEpq 910 (948)
T KOG4644|consen 896 AGGGGFIYLLIKEPQ 910 (948)
T ss_pred CCCCcEEEEEecCCC
Confidence 999999999987643
|
|
| >COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-07 Score=84.58 Aligned_cols=200 Identities=23% Similarity=0.240 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy9976 80 YVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIM 159 (349)
Q Consensus 80 ~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~ 159 (349)
..+.+++.+.. .|+.+.+.+++|+|+|+|-|+|...+.+.+++..++. +.+..++.|+.+|-+ ..+|+.
T Consensus 62 ~~~~v~e~L~~-----~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~---~~~~a~~~AH~aEV~---~gtGLG 130 (283)
T COG1829 62 ITRKVIEKLGP-----DGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGL---GEESAARIAHVAEVE---NGTGLG 130 (283)
T ss_pred hHHHHHHHhCc-----cCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHH---cCCCch
Confidence 45677777763 3478999999999999999999999999999998875 467899999999864 345777
Q ss_pred HHHHHHhccCCeEEEEecCC---CeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHH
Q psy9976 160 DQYVSVMGEEGSALLIDCKT---HEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236 (349)
Q Consensus 160 D~~a~~~gg~~~~~~~d~~~---~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~ 236 (349)
|..+..+||. .+.+.-.. ..++.+|.| +++++.+.-+. .+|. +++
T Consensus 131 DVvAq~~GGl--ViR~~pG~Pg~~~vd~Ip~~---~~~V~~~~~g~-l~T~---------------~vi----------- 178 (283)
T COG1829 131 DVVAQYTGGL--VIRVKPGGPGEGEVDRIPVP---GLRVITISLGE-LSTK---------------SVI----------- 178 (283)
T ss_pred HHHHHhcCcE--EEEecCCCCCeEEEEEeecC---CceEEEEEccc-ccHH---------------Hhh-----------
Confidence 9999999981 22332222 245666654 46766555442 3332 122
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCC
Q psy9976 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKG-ANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGV 315 (349)
Q Consensus 237 ~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~-~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga 315 (349)
+++..+ .+++. ..++ .+.|++-+++.| |+.+.+--+ ..+.++.++...++.... .|-
T Consensus 179 -----------~~~~~~----~i~~~--g~~~l~ellk~Ptle~f---~~~a~~FA~-~~Gl~~~~v~~~~~~~~~-~g~ 236 (283)
T COG1829 179 -----------TDEVVR----KINEA--GKRALAELLKNPTLENF---MEEAREFAR-RTGLMSEEVKEAAEALHS-VGG 236 (283)
T ss_pred -----------hhHHHH----HHHHH--HHHHHHHHHhCCCHHHH---HHHHHHHHH-HhCcCHHHHHHHHHHhhh-cCc
Confidence 111111 12222 2222 334555566665 666655333 377888887777777776 466
Q ss_pred eEEEecccCccceeEEEe-CCCchhhhhhhcc
Q psy9976 316 LGCRMTGGGFGGCAIALV-SPLNLRRGRKKKS 346 (349)
Q Consensus 316 ~gakltGaG~GG~~i~l~-~~~~~~~~~~~~~ 346 (349)
+++.|.= .|-.++++. ..+..+++.+.+.
T Consensus 237 l~as~~m--lg~tVFa~~~~~e~~~~~~~~~~ 266 (283)
T COG1829 237 LGASMAM--LGVTVFALSPEAERLAEVGKDLG 266 (283)
T ss_pred hhHhHHh--hCcEEEEeccccchHHHHHHhhc
Confidence 7665533 247788888 3456666665543
|
|
| >KOG4519|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-06 Score=79.60 Aligned_cols=68 Identities=22% Similarity=0.073 Sum_probs=50.4
Q ss_pred CCCCChHHHHHHHHHHHHHHhhCC---C-------C-C-CHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEe
Q psy9976 109 GSGLSSSAALEVATYTFLESITDE---K-------T-L-KLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLID 176 (349)
Q Consensus 109 g~GLgSSaA~~vA~~~al~~~~~~---~-------~-~-~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d 176 (349)
+.|||||||++.++..++.+.++. + + + +++-+-.+|+.+.-..+|+-+...|..+++||. ..|.+
T Consensus 152 KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS---~rYrR 228 (459)
T KOG4519|consen 152 KTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRR 228 (459)
T ss_pred ccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccc---eeeee
Confidence 789999999999999777766642 1 2 1 245567788888777888765555999999997 56666
Q ss_pred cCC
Q psy9976 177 CKT 179 (349)
Q Consensus 177 ~~~ 179 (349)
|.+
T Consensus 229 F~P 231 (459)
T KOG4519|consen 229 FSP 231 (459)
T ss_pred CCH
Confidence 753
|
|
| >KOG1537|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.5e-08 Score=87.46 Aligned_cols=201 Identities=22% Similarity=0.306 Sum_probs=126.0
Q ss_pred ceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh-------hcCCCChh-----------
Q psy9976 97 GFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHS-------FAGVPCGI----------- 158 (349)
Q Consensus 97 g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~-------~~G~~~G~----------- 158 (349)
+-.+.+..-||.|.|+|||++..+|-....++...+.+ ++......+.-+|+. ++|.-+|.
T Consensus 94 ~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGl-sk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~ 172 (355)
T KOG1537|consen 94 TTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGL-SKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAK 172 (355)
T ss_pred ceeeeecCCccccccccchhhhhhhhheecchHhhcCC-ccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhh
Confidence 45677788899999999999999998877777666655 554444444444431 11111110
Q ss_pred -----hHHHH-HHhccCCeEEEEe-cCCCee-EEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhcc
Q psy9976 159 -----MDQYV-SVMGEEGSALLID-CKTHEA-RHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSF 230 (349)
Q Consensus 159 -----~D~~a-~~~gg~~~~~~~d-~~~~~~-~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l 230 (349)
.|... ...|| ..++. ..+.+. +++.+|..++++++++.+.....|... +..|..
T Consensus 173 ~~~~~ad~ilp~~~gg---~~li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fel~T~k~------------R~vLPt--- 234 (355)
T KOG1537|consen 173 VSGYHADNILPAIMGG---FVLIRNLPPLDLGKPLRFPWDKDLKFILVIPDFELPTKKM------------RAVLPT--- 234 (355)
T ss_pred hcCCCHHHhcccccCC---eeeecCCCcccccccccCCCCccceEEEEeccccccchhh------------hhhcCc---
Confidence 13222 55555 23333 445555 556666656899999999988777521 223321
Q ss_pred CCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHH-HHHHH-HHHhhhcccCCCChhHHHHHH
Q psy9976 231 RDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEG-DFETFG-KLMNE-SHDSLRDDYEVSCKELDDIAH 307 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~-d~~~lg-~lm~~-s~~~lr~~~~vs~p~ld~l~~ 307 (349)
.|.+..|++ +.+|...+..|+.++ |-..++ .+|.+ -|+..|. --.|-++.+..
T Consensus 235 --------------------~yp~~d~V~-NlqrlA~LttAl~~~p~n~~L~y~~m~DkvhqPyRa---~LIPGl~~il~ 290 (355)
T KOG1537|consen 235 --------------------EYPMVDHVW-NLQRLAALTTALLEGPDNVMLGYALMSDKVHQPYRA---PLIPGLEAILK 290 (355)
T ss_pred --------------------cccceeeee-cHHHHHHHHHHHhcCCCchhhhhhhhhccccCcccc---ccCccHHHHHH
Confidence 123344444 456777778888877 544444 45542 4444444 35688999998
Q ss_pred HHHc--CCCCeEEEecccCccceeEEEeCCCchhhhhh
Q psy9976 308 CAQS--LPGVLGCRMTGGGFGGCAIALVSPLNLRRGRK 343 (349)
Q Consensus 308 ~a~~--~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~ 343 (349)
.+.. ++|.+|.-++||| .+++++.. ++-+++..
T Consensus 291 ~~~p~t~pGl~GiclSGAG--PT~lAlat-enf~eI~~ 325 (355)
T KOG1537|consen 291 AALPATYPGLFGICLSGAG--PTALALAT-ENFQEIGE 325 (355)
T ss_pred hhCcccCCceeeEEecCCC--CeeEEEec-CcHHHHHH
Confidence 8877 2499999999998 99999987 44555443
|
|
| >KOG2833|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.3e-06 Score=75.34 Aligned_cols=141 Identities=21% Similarity=0.209 Sum_probs=88.2
Q ss_pred eEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHH-HHhccCCeEEEEe
Q psy9976 98 FNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYV-SVMGEEGSALLID 176 (349)
Q Consensus 98 ~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a-~~~gg~~~~~~~d 176 (349)
+.|.-.+|.|..+||.||||=-+|++.+|+.+|+++. +++++-.+|++. ||. ++ ++||| ++...
T Consensus 106 lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~-~~~els~iAR~G--------SGS---ACRSl~GG---~V~W~ 170 (395)
T KOG2833|consen 106 LHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDD-SPEELSRIARQG--------SGS---ACRSLYGG---FVAWE 170 (395)
T ss_pred EEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCC-CHHHHHHHHhcc--------Cch---hhhhhhcc---eeEee
Confidence 5555666899999999999999999999999999999 999998888853 332 23 78999 55552
Q ss_pred ------cCC-CeeEEeeCCCCCCeEEEE-EeCCCCcccC-hhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccC
Q psy9976 177 ------CKT-HEARHIPLGDDHQYVFLI-INSNVHHELS-SSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLL 247 (349)
Q Consensus 177 ------~~~-~~~~~l~~~~~~~~~~ll-~~s~~~~~~~-~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l 247 (349)
... ..++..|-..=|++++++ +-+.....+. ++.+..-+ +.
T Consensus 171 mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sv----eT-------------------------- 220 (395)
T KOG2833|consen 171 MGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSV----ET-------------------------- 220 (395)
T ss_pred cccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHH----HH--------------------------
Confidence 111 223333321115666443 3344433332 11111000 00
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy9976 248 SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMN 285 (349)
Q Consensus 248 ~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~ 285 (349)
+.-+..|+.+++- +|..++.+|+++.||+.|.++.-
T Consensus 221 S~L~qhRi~~vVP--~Ri~~m~eaI~~rDF~~FA~lTm 256 (395)
T KOG2833|consen 221 SQLLQHRIESVVP--QRIQQMREAIRERDFESFAKLTM 256 (395)
T ss_pred hHHHHHHHHhhhH--HHHHHHHHHHHhcCHHHHHHHHH
Confidence 1112234444432 46889999999999999999754
|
|
| >PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry [] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00015 Score=49.65 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=23.3
Q ss_pred hhhhceeeeCCcEEEecccccceEEEEEEec
Q psy9976 10 LLKSLMVKKRLQWIIMMDVRQVVTVLLGSRN 40 (349)
Q Consensus 10 ~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~ 40 (349)
|.|| |+|+++|+|||+ |||+.+++++++|
T Consensus 24 liGe-HtDy~gG~Vl~~-Ai~~~~~~a~~~r 52 (52)
T PF10509_consen 24 LIGE-HTDYNGGFVLPA-AIDLRTYVAVSPR 52 (52)
T ss_dssp EE-T-T-GGGT-EEEEE-EEEEEEEEEEEEE
T ss_pred ecCc-ccccCCCeEEEE-EeeccEEEEEEcC
Confidence 4555 789999999999 9999999999886
|
The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 349 | ||||
| 1wuu_A | 399 | Crystal Structure Of Human Galactokinase Complexed | 6e-73 | ||
| 1pie_A | 419 | Crystal Structure Of Lactococcus Lactis Galactokina | 3e-30 | ||
| 2cz9_A | 350 | Crystal Structure Of Galactokinase From Pyrococcus | 8e-29 | ||
| 1s4e_A | 352 | Pyrococcus Furiosus Galactokinase In Complex With G | 3e-25 | ||
| 2a2d_A | 478 | X-Ray Structure Of Human N-Acetyl Galactosamine Kin | 1e-11 | ||
| 2aj4_A | 548 | Crystal Structure Of Saccharomyces Cerevisiae Galac | 3e-06 | ||
| 2hfu_A | 332 | Crystal Structure Of L. Major Mevalonate Kinase In | 5e-06 | ||
| 3v2u_C | 520 | Crystal Structure Of The Yeast Gal Regulon Complex | 6e-06 | ||
| 3v5r_A | 505 | Crystal Structure Of The Unliganded Form Of Gal3p L | 7e-06 | ||
| 2hfs_A | 332 | Crystal Structure Of L. Major Mevalonate Kinase Len | 3e-05 |
| >pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With Mgamppnp And Galactose Length = 399 | Back alignment and structure |
|
| >pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase Complexed With Galactose Length = 419 | Back alignment and structure |
|
| >pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus Horikoshi Length = 350 | Back alignment and structure |
|
| >pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With Galactose, Adp And Magnesium Length = 352 | Back alignment and structure |
|
| >pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase Complexed With Mn-Amppnp And N-Acetyl Glactosamine Length = 478 | Back alignment and structure |
|
| >pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Galactokinase In Complex With Galactose And Mg:amppnp Length = 548 | Back alignment and structure |
|
| >pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex With R-Mevalonate Length = 332 | Back alignment and structure |
|
| >pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The Repressor, Gal80p, And The Transducer, Gal3p, With Galactose And Atp Length = 520 | Back alignment and structure |
|
| >pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p Length = 505 | Back alignment and structure |
|
| >pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase Length = 332 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 | Back alignment and structure |
|---|
Score = 388 bits (999), Expect = e-135
Identities = 161/302 (53%), Positives = 211/302 (69%), Gaps = 7/302 (2%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWANYVKGVVSIFNDR 91
TVL+GS + L + S AD+P + F +P Q+ L PG P+WANYVKGV+ +
Sbjct: 68 TVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYY--P 125
Query: 92 VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSF 151
AP+PGF+AV++SSVP+G GLSSSA+LEVATYTFL+ + + + +A CQ+AEHSF
Sbjct: 126 AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDS-GTIAARAQVCQQAEHSF 184
Query: 152 AGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEY 211
AG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D + LI NSNV H L+SSEY
Sbjct: 185 AGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPL-SDPKLAVLITNSNVRHSLASSEY 243
Query: 212 AVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANA 271
VRR QC+ V L + S R+V L+ LE A+ L+S E ++R HVV EI RT + A A
Sbjct: 244 PVRRRQCEEVARALGKESLREVQLEELEA--ARDLVSKEGFRRARHVVGEIRRTAQAAAA 301
Query: 272 LKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIA 331
L+ GD+ FG+LM ESH SLRDDYEVSC ELD + A ++PGV G RMTGGGFGGC +
Sbjct: 302 LRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVT 361
Query: 332 LV 333
L+
Sbjct: 362 LL 363
|
| >1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 | Back alignment and structure |
|---|
Score = 372 bits (958), Expect = e-128
Identities = 103/306 (33%), Positives = 159/306 (51%), Gaps = 12/306 (3%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRV 92
T L ++ L+S++ K I FD+ +V+K W+NYVKG++ +
Sbjct: 80 TTGLARLREDKKVKLYSENF--PKLGVIEFDLDEVEK--KDGELWSNYVKGMIVMLKGAG 135
Query: 93 APV-PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSF 151
+ GF +I +P SGLSSSA+LE+ L+ + + + + Q+ E+ +
Sbjct: 136 YEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLN-VPRLELVQLGQKTENDY 194
Query: 152 AGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEY 211
GV GI+DQ+ GE A+ +DC T + +P+ + Y +I+N+N L+ S+Y
Sbjct: 195 IGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPV-ELRDYDIVIMNTNKPRALTESKY 253
Query: 212 AVRRAQCKSVLDKLHRV----SFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYK 267
R A+ + L ++ S ++S + + + + + KR H V E +RT
Sbjct: 254 NERFAETREALKRMQTRLDIQSLGELSNEEFD-ANTDLIGDETLIKRARHAVYENNRTKI 312
Query: 268 GANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGG 327
A G+ FG+L+N SH SL+DDYEV+ ELD +A AQ GVLG RMTG GFGG
Sbjct: 313 AQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGG 372
Query: 328 CAIALV 333
CAIALV
Sbjct: 373 CAIALV 378
|
| >2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 | Back alignment and structure |
|---|
Score = 359 bits (923), Expect = e-124
Identities = 102/301 (33%), Positives = 153/301 (50%), Gaps = 20/301 (6%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRV 92
T + ++ ++ L+S + F + ++K W +YVKG+ + +
Sbjct: 33 TKIEAEKHG--EVILYS----EHFGEERKFSLNDLRK----ENSWIDYVKGIFWVLKESD 82
Query: 93 APVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFA 152
V G + ++P+G+GLSSSA+ EV L+ + + K L K L ++AE+ F
Sbjct: 83 YEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLK-LDSLSKVLLAKKAENEFV 141
Query: 153 GVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYA 212
GVPCGI+DQ+ V G EG+ + +D T + +IP D L+ + V EL+SSEYA
Sbjct: 142 GVPCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFPKD--VSILVFYTGVRRELASSEYA 199
Query: 213 VRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANAL 272
R+ + L L + S ++V L L K ++V E R + +AL
Sbjct: 200 ERKHIAEESLKILGKGSSKEVREGELSK------LPPLHRKFFGYIVRENARVLEVRDAL 253
Query: 273 KEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIAL 332
KEG+ E GK++ +H L +YEVSCKELD A L G G R+TG GFGG AIAL
Sbjct: 254 KEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKL-GAYGARLTGAGFGGSAIAL 312
Query: 333 V 333
V
Sbjct: 313 V 313
|
| >2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 | Back alignment and structure |
|---|
Score = 302 bits (774), Expect = e-100
Identities = 84/355 (23%), Positives = 143/355 (40%), Gaps = 63/355 (17%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRV 92
++ + + L + + D S +Q + P W NY + +
Sbjct: 87 VLIAVEPVKTYALQLANTN---PLYPDFSTSANNIQ-IDKTKPLWHNYFLCGLKGIQEHF 142
Query: 93 A--PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHS 150
+ G N ++ ++P SGLSSS+AL ++ + L + A C ++E
Sbjct: 143 GLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLG-RNLSKVELAEICAKSER- 200
Query: 151 FAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNV-HHELSSS 209
+ G G MDQ +S + EEG+A LI+ A + L VF+I NS V ++ ++S
Sbjct: 201 YIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKL--PSGAVFVIANSCVEMNKAATS 258
Query: 210 EYAVRRAQCKSVLDKLHRV---------------SFRDVSLKSLE--------------- 239
+ +R +C+ L + + +SL+ +
Sbjct: 259 HFNIRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPE 318
Query: 240 ------------------DKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALK---EGDFE 278
+ Q +L + Y+R HV +E R + + E +
Sbjct: 319 EICRCLGISLEELRTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQ 378
Query: 279 TFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333
G+LMN+SH S RD YE SC ELD + + G G R+TG G+GGC +++V
Sbjct: 379 LLGELMNQSHMSCRDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWGGCTVSMV 432
|
| >2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 5e-69
Identities = 48/257 (18%), Positives = 85/257 (33%), Gaps = 44/257 (17%)
Query: 77 WANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLK 136
V + I S++P G+ SSAA+ +A + L
Sbjct: 54 EDTLSMAVYASLEYLNITEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQ-ADLP 112
Query: 137 LTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFL 196
+ AE P G+ + + K + + +
Sbjct: 113 HDVLEILVNRAEMIAHMNPSGLDAKTCLSDQ-----PIRFIKNVGFTELEMDLSAY--LV 165
Query: 197 IINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGH 256
I ++ V+ + V+ ++
Sbjct: 166 IADTGVYGHTREAIQVVQNKG--------------------------------KDALPFL 193
Query: 257 HVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316
H + E+ T + A+ + D E G++++++H L+ + VS E D + A S G L
Sbjct: 194 HALGEL--TQQAEIAISQKDAEGLGQILSQAHLHLK-EIGVSSLEADSLVETALS-HGAL 249
Query: 317 GCRMTGGGFGGCAIALV 333
G +M+GGG GGC IALV
Sbjct: 250 GAKMSGGGLGGCIIALV 266
|
| >2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 4e-67
Identities = 54/279 (19%), Positives = 102/279 (36%), Gaps = 41/279 (14%)
Query: 59 DISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAAL 118
+ P + +V G I + SG+ +SA+
Sbjct: 59 QVDDQRPAIPGYIAQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGGPLVPSSGIGASASD 118
Query: 119 EVATYTFLESITDEKTLKLTDKALA--CQEAEHSFAGVPCGIMDQYVSVMGEEGSALLID 176
VA L + L LTD+ + E + G P G + + G +L
Sbjct: 119 VVAFSRALSELYQ---LNLTDEEVNLSAFVGEGGYHGTPSGADNTAATYGG----LILYR 171
Query: 177 CKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236
+ ++ P+ + +++ + ++ + V + + +
Sbjct: 172 RQNGKSVFKPIAFQQRLYLVVVGTGINASTAKVVNDVHKMKQQ----------------- 214
Query: 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYE 296
Q + Y H+V++ AL++GD + G+LMN +HD R +
Sbjct: 215 -------QPVQFKRLYDNYTHIVSQ------AREALQKGDLQRLGQLMNANHDLCR-QID 260
Query: 297 VSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP 335
VSC+EL+ I ++ G LG +++G G GG A+AL +
Sbjct: 261 VSCRELESIVQTCRT-YGALGAKLSGTGRGGIAVALAAS 298
|
| >1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 5e-67
Identities = 56/305 (18%), Positives = 101/305 (33%), Gaps = 54/305 (17%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDR- 91
+ + ++I L+ D + ++ +++ + P Y + D
Sbjct: 37 STIEIKETQEDEIILNL----NDLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYL 92
Query: 92 -VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALA--CQEAE 148
+ P GF I S +P+ GL SSA++ + T + + +L D +A E
Sbjct: 93 NIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYN---KELKDDEIAKLGYMVE 149
Query: 149 HSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSS 208
G D ++ N
Sbjct: 150 KEIQGKASI-TDTSTITYKG---------------------------ILEIKNNKFRKIK 181
Query: 209 SEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKG 268
E+ CK ++ + + ++ + + + EID+
Sbjct: 182 GEFEEFLKNCKFLI--------VYAEKRKKKTAELVNEVA--KIENKDEIFKEIDKV--I 229
Query: 269 ANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGC 328
ALK + E FGKLM ++H+ L+ +S +LD I G ++TG G GGC
Sbjct: 230 DEALKIKNKEDFGKLMTKNHELLK-KLNISTPKLDRIVDIGNR--FGFGAKLTGAGGGGC 286
Query: 329 AIALV 333
I LV
Sbjct: 287 VIILV 291
|
| >2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 3e-66
Identities = 51/295 (17%), Positives = 98/295 (33%), Gaps = 47/295 (15%)
Query: 41 NSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNA 100
N+ +I + ++ + + I D+ +++K +V+ F +
Sbjct: 35 NAGKIKVLIEALESGNYSSIKSDV-----YDGMLYDAPDHLKSLVNRFVELNNITEPLAV 89
Query: 101 VILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMD 160
I +++P GL SSAA+ VA K+L + AE G P GI
Sbjct: 90 TIQTNLPPSRGLGSSAAVAVAFVRASYDFLG-KSLTKEELIEKANWAEQIAHGKPSGIDT 148
Query: 161 QYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKS 220
Q + + K H L D ++I++ V + + V +
Sbjct: 149 QTIVSGK-----PVWFQKGHAETLKTLSLDGY--MVVIDTGVKGSTRQAVHDVHKLC--- 198
Query: 221 VLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETF 280
E+ + HV + ++ ++ FE
Sbjct: 199 -----------------------------EDPQYMSHVKHIGKLVLRASDVIEHHKFEAL 229
Query: 281 GKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP 335
+ NE H L+ VS +++ + + G + ++TG G GG + L
Sbjct: 230 ADIFNECHADLK-ALTVSHDKIEQLMKIGKE-NGAIAGKLTGAGRGGSMLLLAKD 282
|
| >3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 7e-61
Identities = 55/289 (19%), Positives = 100/289 (34%), Gaps = 24/289 (8%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIP---KVQKLTPGAPKWANYVKGVVSIFN 89
+ + + +A K FD+P + P +W+NY K + + +
Sbjct: 71 MLCAVKILDEKNPSITLTNA-DPKFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGLHVAH 129
Query: 90 D----------RVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTD 139
P+ G S +P G GLSS+ A T ++ + D
Sbjct: 130 SYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGLSSAFTCAAALATIRANMGKNFDISKKD 189
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTH-EARHIPL--GDDHQYVFL 196
AEH + GV G MDQ SV GEE AL ++ + +A +H+ F+
Sbjct: 190 LTRITAVAEH-YVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFV 248
Query: 197 IINSNVHH---ELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYK 253
I N+ V E + + Y +R + + L + S +D + + ++
Sbjct: 249 IANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALP--SHKDNSNSERGNLRDFM 306
Query: 254 RGHHVVTEIDRTYKGANALKEGD-FETFGKLMNESHDSLRDDYEVSCKE 301
++ E + + +L+ ES + + V
Sbjct: 307 DAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEAS 355
|
| >3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520 | Back alignment and structure |
|---|
Score = 120 bits (301), Expect = 2e-30
Identities = 43/169 (25%), Positives = 59/169 (34%), Gaps = 13/169 (7%)
Query: 172 ALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFR 231
A + L + V S + + + L+ R
Sbjct: 308 AYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTR 367
Query: 232 DVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFET-------FGKLM 284
D + + Y+R HV +E R K + F T FG+LM
Sbjct: 368 DY-----LTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLM 422
Query: 285 NESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333
NES S YE SC E + I A + G G R+TG G+GGC I LV
Sbjct: 423 NESQASCDKLYECSCIETNQICSIALA-NGSFGSRLTGAGWGGCTIHLV 470
|
| >3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 1e-48
Identities = 51/300 (17%), Positives = 96/300 (32%), Gaps = 38/300 (12%)
Query: 38 SRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGV-VSIFNDRVAPVP 96
NS +I +++ A+ K + A+ +KGV I D
Sbjct: 46 EETNSGRIEINAYDAQCCKSYLSMSQLEID--------GEASLIKGVYNRIIRDYRLEPK 97
Query: 97 GFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPC 156
F + P GSGL +S+ + V L + + E E G+
Sbjct: 98 SFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLP-LGDYETSRLAYEIERKDLGLSG 156
Query: 157 GIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRA 216
G DQY + G + D L + + EL SS
Sbjct: 157 GKQDQYAAAFGGFNYMEFLQN-----------DLVIVNPLKMKRWIVDELESSMVLYFTG 205
Query: 217 QCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGD 276
+ +S S + ++ ++ H + + AL +GD
Sbjct: 206 RSRS-------------SAAIINEQKKNTSEGNQTAIEAMHKIKQS--AIDTKLALLKGD 250
Query: 277 FETFGKLMNESHDSLRD-DYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP 335
F +++ E ++ + ++ + + A G + +++G G GG + +V P
Sbjct: 251 VGEFARILGEGWENKKKMAGAITNPMIQEAFDVATG-AGAMAGKVSGAGGGGFIMFVVEP 309
|
| >1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395 | Back alignment and structure |
|---|
Score = 128 bits (321), Expect = 8e-34
Identities = 51/258 (19%), Positives = 83/258 (32%), Gaps = 52/258 (20%)
Query: 94 PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDK------------- 140
+P + ++ S +P G+GL SSAA V L + +E T L D+
Sbjct: 125 TLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKS 184
Query: 141 -ALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
E E G P G+ + + + + + + Q L+ N
Sbjct: 185 INKWAYEGERVIHGNPSGVDNSVST------WGGALRYQQGKMSSLKRLPALQ--ILLTN 236
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLS--DEEYKRGHH 257
+ V + VR K + LL+ D
Sbjct: 237 TKVPRSTKALVAGVRSRLIK-------------------FPEIMAPLLTSIDAISLECER 277
Query: 258 VVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLG 317
V+ E+ A A + +LM+ + L V LD + + L
Sbjct: 278 VLGEM------AAAPVPEQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAA--HGLH 328
Query: 318 CRMTGGGFGGCAIALVSP 335
++TG G GGC I L+ P
Sbjct: 329 SKLTGAGGGGCGITLLKP 346
|
| >3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 | Back alignment and structure |
|---|
Score = 98.9 bits (246), Expect = 2e-23
Identities = 48/324 (14%), Positives = 94/324 (29%), Gaps = 40/324 (12%)
Query: 23 IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWA---N 79
I+ V + +T+ L N++ + + P +L P W
Sbjct: 30 AILTAVNRYITLTLEDSER-NELWIPHY--------ENPVSWPIGGELKPDGEHWTFTAE 80
Query: 80 YVKGVVSIFNDRVAPVPGFNAVILSSVP----MGSGLSSSAALEVATYTFLESITDEKTL 135
+ + + VI + + GL SSAA VA L + +
Sbjct: 81 AINIATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEIS 140
Query: 136 KLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVF 195
L LA + G D + G I T + + ++ +
Sbjct: 141 MLKKFKLA-ALSHLVVQGNGSC-GDIASCMYGG-----WIAYTTFDQEWVKHRLAYKSLE 193
Query: 196 LIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRG 255
+ + + V + + + + E+ K
Sbjct: 194 WFMKEPWPML---------QIETLEEPVPTFSVGWTGTPVSTGKLVSQIHAFKQEDSKNY 244
Query: 256 HHVVTEIDR-TYKGANALKEGDFETFGKLMNESHDSLRD-----DYEVSCKELDDIAHCA 309
H +T + + A D E + E+ L++ + L ++A A
Sbjct: 245 QHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSA 304
Query: 310 QSLPGVLGCRMTGGGFGGCAIALV 333
+++ G + +G G G C IA
Sbjct: 305 ENMGG--AGKSSGSGGGDCGIAFS 326
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 7e-06
Identities = 55/359 (15%), Positives = 108/359 (30%), Gaps = 110/359 (30%)
Query: 2 KTILQRLYLLKSLMVKKRLQ----WIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKP 57
KT + L + S V+ ++ W+ + + TVL + QI + ++R+D
Sbjct: 163 KTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHS 220
Query: 58 TDISFDIPKVQKLTPGAPKWANYVKG-----------VVSIFNDRVAPVPGFNAVIL--- 103
++I I +Q K Y + FN + IL
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------LSCKILLTT 272
Query: 104 --SSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVP---CGI 158
V LS++ ++ ++T ++ L K L C+ + +P
Sbjct: 273 RFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-----LPREVLTT 325
Query: 159 MDQYVSVMGEEGSALLIDCKTH--EARHI-----------------PLGDDHQYVFL-II 198
+ +S++ + D +H+ P + L +
Sbjct: 326 NPRRLSIIA----ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 199 NSNVH----------HELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLS 248
+ H ++ S+ V++KLH+ SL +K
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSD-------VMVVVNKLHK--------YSLVEKQ-----P 421
Query: 249 DEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCK-ELDDIA 306
E + E+ + AL H S+ D Y + + DD+
Sbjct: 422 KESTISIPSIYLELKVKLENEYAL---------------HRSIVDHYNIPKTFDSDDLI 465
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 1e-05
Identities = 30/166 (18%), Positives = 47/166 (28%), Gaps = 48/166 (28%)
Query: 203 HHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV--- 259
HH E + Q K +L + K ++D + +LS EE H++
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEID---HIIMSK 58
Query: 260 TEIDRTY--------KGANALK----EGDFETFGKLM-----------------NESHDS 290
+ T K ++ E + LM E D
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 291 LRDD------YEVS-CKELDDIAHCAQSL---PGVLGCRMTGGGFG 326
L +D Y VS + + L VL + G G
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV--LGSG 162
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| 3v2u_C | 520 | Protein GAL3; rossmann fold, GHMP superfamily, tra | 100.0 | |
| 1wuu_A | 399 | Galactokinase; galactosemia, GHMP superfamily, tra | 100.0 | |
| 1pie_A | 419 | Galactokinase; galactose, galactosemia, transferas | 100.0 | |
| 2a2c_A | 478 | N-acetylgalactosamine kinase; galactokinase, , tra | 100.0 | |
| 2cz9_A | 350 | Probable galactokinase; structural genomics, NPPSF | 100.0 | |
| 3k85_A | 357 | D-glycero-D-manno-heptose 1-phosphate kinase; bact | 100.0 | |
| 3k17_A | 365 | LIN0012 protein; protein structure initiative II(P | 100.0 | |
| 3gon_A | 335 | Phosphomevalonate kinase; GHMP kinase superfamily, | 100.0 | |
| 2pg9_A | 337 | Phosphomevalonate kinase; GHMP kinase superfamily, | 100.0 | |
| 1kvk_A | 395 | MK, mevalonate kinase; RMK, ATP, GHMP, transferase | 100.0 | |
| 2x7i_A | 308 | Mevalonate kinase; transferase; HET: CIT; 2.20A {S | 100.0 | |
| 4hac_A | 321 | Mevalonate kinase; GHMP, ATP binding, phosphorylat | 100.0 | |
| 1kkh_A | 317 | Mevalonate kinase; mixed beta sheet, phosphate-bin | 100.0 | |
| 2hfs_A | 332 | Mevalonate kinase, putative; GHMP kinase, trypanos | 100.0 | |
| 2oi2_A | 292 | Mevalonate kinase; enzyme-inhibitor complex, trans | 100.0 | |
| 1h72_C | 296 | HK, homoserine kinase; transferase, threonine bios | 100.0 | |
| 3hul_A | 298 | HSK, HK, homoserine kinase; structural genomics, p | 99.95 | |
| 2gs8_A | 317 | Mevalonate pyrophosphate decarboxylase; streptococ | 99.95 | |
| 3pyf_A | 306 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.94 | |
| 3qt5_A | 332 | Mevalonate diphosphate decarboxylase; GHMP kinase | 99.93 | |
| 2v8p_A | 271 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.93 | |
| 1uek_A | 275 | 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k | 99.91 | |
| 2ww4_A | 283 | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; | 99.91 | |
| 1fi4_A | 416 | Mevalonate 5-diphosphate decarboxylase; mixed alph | 99.87 | |
| 2hke_A | 380 | Diphosphomevalonate decarboxylase, putative; meval | 99.81 | |
| 3lto_A | 323 | Mevalonate diphosphate decarboxylase; protein stru | 99.74 | |
| 3f0n_A | 414 | Mevalonate pyrophosphate decarboxylase; cholestero | 99.68 |
| >3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-63 Score=490.51 Aligned_cols=328 Identities=28% Similarity=0.407 Sum_probs=273.7
Q ss_pred HhhhhhceeeeCCcEEEecccccceEEEEEEec--CCCeEEEEecCCCCCCCCceEEeCCCcc---cCCCCCcCHhHHHH
Q psy9976 8 LYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRN--NSNQIHLHSDSARADKPTDISFDIPKVQ---KLTPGAPKWANYVK 82 (349)
Q Consensus 8 l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~--~d~~i~v~s~~~~~~~~~~~~~~l~~~~---~l~~~~~~w~~~v~ 82 (349)
+.|+|| |+|++||+|||| |||++++++++++ +|+.|+|+|.+.. ....+|+++.+. .+.+..+.|+||++
T Consensus 48 VnLiGE-HtDyngG~VLp~-AI~~~~~vav~~~~~~d~~i~i~S~~~~---~~~~~~~l~~~~~~~~i~~~~~~W~~Yv~ 122 (520)
T 3v2u_C 48 VNLIGE-HIDYCDFSVLPL-AIDVDMLCAVKILDEKNPSITLTNADPK---FAQRKFDLPLDGSYMAIDPSVSEWSNYFK 122 (520)
T ss_dssp EEEECT-TCGGGTCCBEEE-EEEEEEEEEEEECCCSSCEEEEEESSTT---SCCEEEECCTTCCCCCCCTTSCCHHHHHH
T ss_pred EEEecc-CeeeCCCEEEEE-EeecceEEEEEeccCCCCEEEEEECCCC---CCceEEEeccCccccccCcccccHHHHHH
Confidence 457788 467899999999 9999999999998 8999999998742 224567763110 23344568999999
Q ss_pred HHH----HHHHhc------CCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHH
Q psy9976 83 GVV----SIFNDR------VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESIT---DEKTLKLTDKALACQEAEH 149 (349)
Q Consensus 83 ~~~----~~l~~~------~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~---~~~~~~~~~l~~~a~~~E~ 149 (349)
+++ +.+++. +.+..||++.|.|+||+|+|| |||++||++.|+..++ +.++ ++.+++++|+++|+
T Consensus 123 g~i~~v~~~l~~~~~~~~~g~~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l-~~~~la~la~~aE~ 199 (520)
T 3v2u_C 123 CGLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDI-SKKDLTRITAVAEH 199 (520)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSCCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCC-BHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHH
Confidence 865 345442 446789999999999999999 9999999999999998 7778 99999999999998
Q ss_pred hhcCCCChhhHHHHHHhccCCeEEEEecCC-CeeEEeeCCC--CCCeEEEEEeCCC---CcccChhhHHHHHHHHHHHHH
Q psy9976 150 SFAGVPCGIMDQYVSVMGEEGSALLIDCKT-HEARHIPLGD--DHQYVFLIINSNV---HHELSSSEYAVRRAQCKSVLD 223 (349)
Q Consensus 150 ~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~-~~~~~l~~~~--~~~~~~ll~~s~~---~~~~~~~~y~~r~~~~~~a~~ 223 (349)
++|.|||+|||+++++|++|+++++||++ ++++++|+|. .+++.|+|++|++ ++.+.+++||.||.||+.|++
T Consensus 200 -~vG~~~G~mDQ~as~~G~~g~~l~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~ 278 (520)
T 3v2u_C 200 -YVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAAN 278 (520)
T ss_dssp -GGTCCCCSHHHHHHHHCBTTBEEEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHH
T ss_pred -HhCCCCchhhHHHHHhCCCCeEEEEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999873 1489999999999 788889999999999999999
Q ss_pred Hhchh-----------------ccCCCCHH---------------------HHHHH-------Hhcc-------------
Q psy9976 224 KLHRV-----------------SFRDVSLK---------------------SLEDK-------HAQK------------- 245 (349)
Q Consensus 224 ~l~~~-----------------~l~~~~~~---------------------~~~~~-------~~~~------------- 245 (349)
+|++. +||+++.+ +++.. +...
T Consensus 279 ~L~~~~g~~~~~~~~~~~~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l 358 (520)
T 3v2u_C 279 ALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTAL 358 (520)
T ss_dssp HHHHHTTBCCCCCCSCSSCTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHT
T ss_pred HHHHhhCCcccccccccccccccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhh
Confidence 99642 35544211 01000 0000
Q ss_pred cCC-H-----------------HHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhhhcccCCCCh
Q psy9976 246 LLS-D-----------------EEYKRGHHVVTEIDRTYKGANALKEG-------DFETFGKLMNESHDSLRDDYEVSCK 300 (349)
Q Consensus 246 ~l~-~-----------------~~~~r~~~~i~e~~rv~~~~~al~~~-------d~~~lg~lm~~s~~~lr~~~~vs~p 300 (349)
.++ + .+++|++|+++|++||.+++++|+++ |++.||++|+++|.+||++|++|||
T Consensus 359 ~~~~~~l~~~~l~~~~~~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~p 438 (520)
T 3v2u_C 359 NCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCI 438 (520)
T ss_dssp TSCHHHHHHHHTSSSCEEESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCH
T ss_pred cCChhhhhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 011 1 36899999999999999999999997 5999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCeEEEecccCccceeEEEe---CCCchhhhhhhc
Q psy9976 301 ELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV---SPLNLRRGRKKK 345 (349)
Q Consensus 301 ~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~---~~~~~~~~~~~~ 345 (349)
+||.|+++|++ .|++|+||||||||||+|+|+ +++.++++++.+
T Consensus 439 eld~lv~~a~~-~Ga~GarlTGaG~GGc~iaLv~~~~~~~~~~~~~~l 485 (520)
T 3v2u_C 439 ETNQICSIALA-NGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKAL 485 (520)
T ss_dssp HHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEEEESTTCSHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCEEEEecCCCCceEEEEEcCCCHHHHHHHHHHH
Confidence 99999999999 699999999999999999999 888888887764
|
| >1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-54 Score=422.86 Aligned_cols=330 Identities=49% Similarity=0.862 Sum_probs=285.8
Q ss_pred HhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccC-CCCCcCHhHHHHHHHH
Q psy9976 8 LYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKL-TPGAPKWANYVKGVVS 86 (349)
Q Consensus 8 l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l-~~~~~~w~~~v~~~~~ 86 (349)
+.++||+.. +++|.+|++ |||+++++++++++++.+++.+.++........+|+++..+.+ .+....|.||+++++.
T Consensus 45 v~L~Geh~D-y~~~~~l~~-ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~v~~a~~ 122 (399)
T 1wuu_A 45 VNLIGEHTD-YNQGLVLPM-ALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQ 122 (399)
T ss_dssp EEEECTTCG-GGTCEEEEE-EEEEEEEEEEEEETTCEEEEEECCSSSCSCSEEEEECCCSSCCCCCCSSGGGHHHHHHHH
T ss_pred EEEeccccc-cCCCEEEeE-EecccEEEEEEECCCCeEEEEECCCCCccccceEEecCccccccccCCCCHHHHHHHHHH
Confidence 346789874 899999999 9999999999999888999999864211011234555411111 1224579999999999
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+ .+...+|+++.+.|+||+|+|||||||++||++.|++++++.++ ++++++++|+++|+.++|.|||+|||+++++
T Consensus 123 ~l--~~~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l-~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~ 199 (399)
T 1wuu_A 123 YY--PAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG-TIAARAQVCQQAEHSFAGMPCGIMDQFISLM 199 (399)
T ss_dssp HC--SSSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCS-CHHHHHHHHHHHHHHHTCCCCCSHHHHHHHH
T ss_pred Hh--cCCCCCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHHh
Confidence 88 34456899999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
||.+.++++|+.+..++++|++. +++.++|++|+++++|....||.|+.+|+.+.++|+.+.+++.+.+++... .+.
T Consensus 200 Gg~~~~~~~~~~~~~~~~~~~~~-~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~--~~~ 276 (399)
T 1wuu_A 200 GQKGHALLIDCRSLETSLVPLSD-PKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAA--RDL 276 (399)
T ss_dssp CCTTEEEEEETTTCCEEEEECCC-SSEEEEEEEEEEEC--CTTTHHHHHHHHHHHHHHTTCSSTTSCCHHHHTTG--GGG
T ss_pred ccCCeEEEEecCCCceEEecCCC-CCeEEEEEECCCccccccccHHHHHHHHHHHHHHhChhhhhcCCHHHHHHH--Hhh
Confidence 99988899999888889998874 589999999999999988899999999999999999888888888877665 556
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 247 LSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 247 l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
+++..++|+.|.+.|++|+.+++++|+++|++.||++|+++|+++++.+++++|+++.+++.+++..|++|+||||||||
T Consensus 277 l~~~~~~r~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~G 356 (399)
T 1wuu_A 277 VSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFG 356 (399)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSE
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCceEEeeecCCCc
Confidence 78888899999999999999999999999999999999999999998899999999999999998339999999999999
Q ss_pred ceeEEEeCCCchhhhhhhc
Q psy9976 327 GCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~~~~~~~~~~ 345 (349)
||+++|++++.++++.+.+
T Consensus 357 g~v~~l~~~~~~~~~~~~l 375 (399)
T 1wuu_A 357 GCTVTLLEASAAPHAMRHI 375 (399)
T ss_dssp EEEEEEEEGGGHHHHHHHH
T ss_pred cEEEEEEccchHHHHHHHH
Confidence 9999999988778777654
|
| >1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-54 Score=418.98 Aligned_cols=327 Identities=33% Similarity=0.507 Sum_probs=283.3
Q ss_pred hhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHH
Q psy9976 9 YLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIF 88 (349)
Q Consensus 9 ~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l 88 (349)
.++||+. |.+||.+|++ |||+++++++++++++.+++.+.++. +....+|++++. ..+....|.||+++++..+
T Consensus 58 ~L~Geh~-d~~G~~~l~~-aI~l~~~v~v~~~~~~~i~i~~~~~~--~~~~~~~~~~~~--~~~~~~~~~n~v~~~~~~l 131 (419)
T 1pie_A 58 NLIGEHT-DYNGGYVFPA-SITIGTTGLARLREDKKVKLYSENFP--KLGVIEFDLDEV--EKKDGELWSNYVKGMIVML 131 (419)
T ss_dssp EEECCSC-TTTTCEEEEE-EEEEEEEEEEEECSSSEEEEEETTCG--GGCCEEEETTCT--TSCCTTCTHHHHHHHHHHH
T ss_pred EEcccce-eeCCCEEEEE-EEcccEEEEEEECCCCEEEEEECCCC--CcceeEEecccc--cCCCCcCHHHHHHHHHHHH
Confidence 4567864 5688999999 99999999999988888999887631 012345665421 0122368999999999999
Q ss_pred HhcCCCC-CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhc
Q psy9976 89 NDRVAPV-PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMG 167 (349)
Q Consensus 89 ~~~~~~~-~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~g 167 (349)
.+.+... .|++|.|.|+||+|+|||||||++||++.|++++++.++ ++++++++|+++|+.++|.|||+|||++++||
T Consensus 132 ~~~g~~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~l-s~~el~~la~~~E~~~~G~~~G~~D~~~~~~G 210 (419)
T 1pie_A 132 KGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNV-PRLELVQLGQKTENDYIGVNSGILDQFAIGFG 210 (419)
T ss_dssp HHTTCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHC
T ss_pred HHhCCCCCCCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCccchhHHHHHhc
Confidence 8766555 799999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhc----hhccCCCCHHHHHHHHh
Q psy9976 168 EEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLH----RVSFRDVSLKSLEDKHA 243 (349)
Q Consensus 168 g~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~----~~~l~~~~~~~~~~~~~ 243 (349)
|.+.++++|+.+..++++|+|. +++.++|++|+++++|.+..||.||.+|++|.++|+ ...+++.+++++.++
T Consensus 211 g~~~~~~~d~~~~~~~~l~~~~-~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~~v~~l~~~~~~~~~~~-- 287 (419)
T 1pie_A 211 EVKKAIELDCNTLKYEMVPVEL-RDYDIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEFDAN-- 287 (419)
T ss_dssp BTTEEEEEETTTCCEEEEECCC-TTEEEEEEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHCCCSSGGGCCHHHHHHT--
T ss_pred cCCeEEEeecCCCceEEeecCC-CCcEEEEEECCCccccccchHHHHHHHHHHHHHHHhhccccCchhhCCHHHHHHH--
Confidence 9988999999888899998874 589999999999999988999999999999999997 456777777777655
Q ss_pred cccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecc
Q psy9976 244 QKLL-SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTG 322 (349)
Q Consensus 244 ~~~l-~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltG 322 (349)
.+.+ ++..++|+.|++.|+.|+.+++++|+++|++.||++|+++|.++++.|++++|+++.+++.+++.+|++|+||||
T Consensus 288 ~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~lsG 367 (419)
T 1pie_A 288 TDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTG 367 (419)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECS
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcCCCceeeEec
Confidence 4445 345678899999999999999999999999999999999999999989999999999999999933999999999
Q ss_pred cCccceeEEEeCCCchhhhhhhc
Q psy9976 323 GGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 323 aG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
||||||+++|++++.++++++.+
T Consensus 368 aG~Gg~v~al~~~~~a~~~~~~l 390 (419)
T 1pie_A 368 AGFGGCAIALVAHDNVSAFRKAV 390 (419)
T ss_dssp SCSSSEEEEEEEGGGHHHHHHHH
T ss_pred CCCCeEEEEEEchhhHHHHHHHH
Confidence 99999999999988777776654
|
| >2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=417.66 Aligned_cols=326 Identities=25% Similarity=0.390 Sum_probs=263.5
Q ss_pred hhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHH
Q psy9976 9 YLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIF 88 (349)
Q Consensus 9 ~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l 88 (349)
.++||+ .|++|+.||++ |||+++++++++++++.++|.+.+.. ....++++++. .....+..|.||++.++..+
T Consensus 65 ~L~Geh-~D~~g~~vl~~-AI~~~~~v~v~~~~~~~i~i~~~~~~---~~~~~~~~~~l-~~~~~~~~~~n~v~~a~~~v 138 (478)
T 2a2c_A 65 NIIGEH-IDYCGYSVLPM-AVEQDVLIAVEPVKTYALQLANTNPL---YPDFSTSANNI-QIDKTKPLWHNYFLCGLKGI 138 (478)
T ss_dssp EEECTT-CGGGTCCBEEE-EEEEEEEEEEEECSSSCEEEEESSTT---SCCEEECCCCC---CCSSCCHHHHHHHHHHHH
T ss_pred EEeccc-eeeCCCeEEEE-EecccEEEEEEECCCCeEEEEECCCC---Ccceeccchhc-ccCCCcccHHHHHHHHHHHH
Confidence 456886 56789999999 99999999999998889999987632 11223333311 11123568999996555443
Q ss_pred HhcCC--CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 89 NDRVA--PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 89 ~~~~~--~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+... ...||++.|.|+||+|+|||||||++||++.|++.+++.++ ++++++++|+++|+ +.|.|+|+|||+++++
T Consensus 139 ~~~~~~~~~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~l-s~~~l~~la~~~E~-~~g~~~g~~D~~a~~~ 216 (478)
T 2a2c_A 139 QEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNL-SKVELAEICAKSER-YIGTEGGGMDQSISFL 216 (478)
T ss_dssp HHHTTCCSCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHG-GGTCCCCSHHHHHHHH
T ss_pred HHHHhccCCCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-hcCCCCccHHHHHHHh
Confidence 32211 25799999999999999999999999999999999999999 99999999999997 7899999999999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCccc-ChhhHHHHHHHHHHHHHHhchh---------ccCCC---
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHEL-SSSEYAVRRAQCKSVLDKLHRV---------SFRDV--- 233 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~-~~~~y~~r~~~~~~a~~~l~~~---------~l~~~--- 233 (349)
|++|++++++|.+..++++|+| +++.|+|++|++++++ .+..||.||.||+.|+++|+++ .++++
T Consensus 217 G~~g~~~~i~f~~~~~~~~~~~--~~~~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~~~L~~~~~~~~~~~~~l~d~~~~ 294 (478)
T 2a2c_A 217 AEEGTAKLIEFSPLRATDVKLP--SGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAK 294 (478)
T ss_dssp CBTTBEEEEETTTTEEEEECCC--TTEEEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHHHHHTTCCTTTCCCHHHHHHH
T ss_pred ccCCcEEEEEcCCCceEEecCC--CCcEEEEEeCCCcccccccchhHHHHHHHHHHHHHHHhhhcccccccchHHhhhhh
Confidence 9777899999999888888887 4899999999999975 3589999999999999999854 12221
Q ss_pred ---------------------CHHHHHHHHh-------cccCC--------HHHHHHHHHHHHHHHHHHHHHHHHhc---
Q psy9976 234 ---------------------SLKSLEDKHA-------QKLLS--------DEEYKRGHHVVTEIDRTYKGANALKE--- 274 (349)
Q Consensus 234 ---------------------~~~~~~~~~~-------~~~l~--------~~~~~r~~~~i~e~~rv~~~~~al~~--- 274 (349)
+.+++.+.++ ...++ ...++|+.|++.|+.|+.+++++|++
T Consensus 295 ~~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~~~ 374 (478)
T 2a2c_A 295 LGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPE 374 (478)
T ss_dssp HTCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred hcccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1111111000 00001 13567899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 275 GDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 275 ~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
+|++.||++|+++|.++|++|++|||++|.|++.+++ .|++|+||||||||||+++|++++.++++++.+
T Consensus 375 ~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~-~Ga~GarltGAG~GG~viaLv~~~~~~~~~~~l 444 (478)
T 2a2c_A 375 NMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWGGCTVSMVPADKLPSFLANV 444 (478)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECTTCSSSEEEEEEEGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh-CCCcEEEeccCCCccEEEEEEcHHHHHHHHHHH
Confidence 9999999999999999999899999999999999999 699999999999999999999998888777654
|
| >2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-51 Score=390.01 Aligned_cols=317 Identities=31% Similarity=0.471 Sum_probs=270.2
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+.++||+.. .++|.+|++ |||+++++.+++++++.+++.+... ....+| ++ .+..+.|.||+++++.
T Consensus 9 ki~L~Ge~~d-~~~~~~l~~-ai~~~~~v~v~~~~~~~i~i~~~~~----~~~~~~-l~-----~~~~~~~~~~~~~~~~ 76 (350)
T 2cz9_A 9 RVNLIGEHTD-YTYGYVMPM-AINLYTKIEAEKHGEVILYSEHFGE----ERKFSL-ND-----LRKENSWIDYVKGIFW 76 (350)
T ss_dssp EEEEECTTCG-GGTCEEEEE-EEEEEEEEEEEEESSEEEEETTTTE----EEEECT-TC-----CCCCSSTHHHHHHHHH
T ss_pred EEEEeecChh-hCCCEEEEE-EeeceEEEEEEECCCCeEEEEECCC----Cccccc-cC-----CCCCCcHHHHHHHHHH
Confidence 3456788765 789999999 9999999999988777788765442 001111 21 0124579999999998
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+.+.+...+|++|.+.|+||+|+|||||||++||++.|++++++.++ ++++++++|.++|..++|.|+|+||++++++
T Consensus 77 ~l~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l-~~~el~~la~~~e~~~~g~~~gi~d~~~~~~ 155 (350)
T 2cz9_A 77 VLKESDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKL-DSLSKVLLAKKAENEFVGVPCGILDQFAVVF 155 (350)
T ss_dssp HHHHTTCCCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTTCCCCCSHHHHHHHH
T ss_pred HHHhcCCCCCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCccchhHHHHHh
Confidence 887766666899999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
|+.++++++|+.+..++++|++ ++++++|++|++++++.+..|+.|+.+|++|++.++.+.+|+.+.+++ ..
T Consensus 156 g~~~~~~~~d~~~~~~~~l~~~--~~~~~vl~~~~~~~~~~t~~~~~r~~~~~~a~~~~~~~~lr~~~~~~~------~~ 227 (350)
T 2cz9_A 156 GREGNVIFLDTHTLDYEYIPFP--KDVSILVFYTGVRRELASSEYAERKHIAEESLKILGKGSSKEVREGEL------SK 227 (350)
T ss_dssp CCTTEEEEEETTTCCEEEEECC--TTEEEEEEECSCC----CHHHHHHHHHHHHHHHHHTCSCGGGCCGGGG------GG
T ss_pred cCCCeEEEEecCCCcEEEEcCC--CCcEEEEEECCCCCccccchHHHHHHHHHHHHHHhChhhhhhCCHHHH------hh
Confidence 9988899999988888999887 489999999999987777779999999999999998878887765443 12
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 247 LSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 247 l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
+++..+++..|.+.|+.|+.++.++|.++|++.||++|+++|.++++.+++++|+++.+++.+++ .|++|+||||||||
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~-~Ga~ga~lsGaG~G 306 (350)
T 2cz9_A 228 LPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALK-LGAYGARLTGAGFG 306 (350)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-TTCSEEEECSSCSS
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-cCCCEEEEecCCCc
Confidence 46666678889999999999999999999999999999999999998899999999999999999 59999999999999
Q ss_pred ceeEEEeCCCchhhhhhhc
Q psy9976 327 GCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~~~~~~~~~~ 345 (349)
||+++|++++.++++.+.+
T Consensus 307 ~~v~~l~~~~~~~~~~~~l 325 (350)
T 2cz9_A 307 GSAIALVDKEDAETIGEEI 325 (350)
T ss_dssp SEEEEEEEGGGHHHHHHHH
T ss_pred eEEEEEEchhhHHHHHHHH
Confidence 9999999987777666543
|
| >3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-50 Score=384.03 Aligned_cols=297 Identities=15% Similarity=0.163 Sum_probs=221.9
Q ss_pred HHhhhhhceeee------CCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHH
Q psy9976 7 RLYLLKSLMVKK------RLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANY 80 (349)
Q Consensus 7 ~l~~~~~~~~~~------~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~ 80 (349)
|+.++|| |+|+ ++|+|||+ |||+++++++++++|+.|+|.|.++ ....+|++++ .+ ....|.||
T Consensus 11 RvnL~Ge-htD~~~~~~~~gG~vl~~-AId~~~~v~i~~~~d~~i~i~s~~~----~~~~~~~~~~--~~--~~~~~~~~ 80 (357)
T 3k85_A 11 RLGLAGG-GSDVSPYSDIYGGLILNA-TINLYAYCTIEETNSGRIEINAYDA----QCCKSYLSMS--QL--EIDGEASL 80 (357)
T ss_dssp EEEEECT-TTTSTTHHHHTCEEEEEE-EEEEEEEEEEEECSSSEEEEEETTT----TEEEEEECCS--SC--CCCSSSHH
T ss_pred EEEEecC-CccCcchhhcCCCEEEEE-EEeCcEEEEEEECCCCeEEEEECCC----CceEEEeccc--cc--cccchHHH
Confidence 3456674 2333 89999999 9999999999999999999999875 2344566542 12 24679999
Q ss_pred HHHHHHHHHhcCCC-CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy9976 81 VKGVVSIFNDRVAP-VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIM 159 (349)
Q Consensus 81 v~~~~~~l~~~~~~-~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~ 159 (349)
++++++.+.+.+.. .+||++.+.++||+|+|||||||++||++.|++++++.++ ++++++++|+++|+.++|.|||+|
T Consensus 81 v~~~~~~l~~~~~~~~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l-~~~~l~~~a~~~E~~~~G~~~G~~ 159 (357)
T 3k85_A 81 IKGVYNRIIRDYRLEPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPL-GDYETSRLAYEIERKDLGLSGGKQ 159 (357)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHTTTCCCCCSH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHccCCCcHH
Confidence 99999999887653 6799999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHhccCCeEEEEecCCCeeEEeeCCCCC-----CeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCC
Q psy9976 160 DQYVSVMGEEGSALLIDCKTHEARHIPLGDDH-----QYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVS 234 (349)
Q Consensus 160 D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~-----~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~ 234 (349)
||++++|||...+.+.++.+..++++|++. . ++.++|++|+.++++. ++++... +
T Consensus 160 D~~a~~~Gg~~~~~~~~~~~~~~~~l~~~~-~~~~~l~~~lvi~~t~~~~~a~---------------~~l~~~~----~ 219 (357)
T 3k85_A 160 DQYAAAFGGFNYMEFLQNDLVIVNPLKMKR-WIVDELESSMVLYFTGRSRSSA---------------AIINEQK----K 219 (357)
T ss_dssp HHHHHHHCSEEEEEEETTTEEEEEEECCCH-HHHHHHHHTEEEECC----------------------------------
T ss_pred HHHHHHhCCceEEEEeCCCceeEEEEecCh-hhhhhcCceEEEEECCCcccHH---------------HHHHHHH----H
Confidence 999999999654445555666678887763 1 2578999999888753 2232100 0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-cCCCChhHHHHHHHHHcCC
Q psy9976 235 LKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD-YEVSCKELDDIAHCAQSLP 313 (349)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-~~vs~p~ld~l~~~a~~~~ 313 (349)
.+ +. .+..+.++.|.+.+ ++.++++||+++|++.||++|+++|.++++. +++|+|++|.+++.+++ .
T Consensus 220 --~~------~~-~~~~~~~~~~~i~~--~~~~~~~aL~~~d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~-~ 287 (357)
T 3k85_A 220 --NT------SE-GNQTAIEAMHKIKQ--SAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATG-A 287 (357)
T ss_dssp ---------------CCTTHHHHHHHH--HHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTT-S
T ss_pred --Hh------hc-CcHHHHHHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-c
Confidence 00 00 00112456777766 5899999999999999999999999999986 89999999999999999 5
Q ss_pred CCeEEEecccCccceeEEEeCCCchhhhhhhcc
Q psy9976 314 GVLGCRMTGGGFGGCAIALVSPLNLRRGRKKKS 346 (349)
Q Consensus 314 Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~~ 346 (349)
||+|+||||||+|||+++|++++.++++++.++
T Consensus 288 Ga~GaklsGaG~gG~vial~~~~~~~~~~~~l~ 320 (357)
T 3k85_A 288 GAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALN 320 (357)
T ss_dssp CCSEEEECCCC---CEEEECCHHHHHHHHHHHH
T ss_pred CCeEeEecccCCCCEEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999888888876653
|
| >3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=347.81 Aligned_cols=287 Identities=17% Similarity=0.165 Sum_probs=227.4
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|++|+|||.+..+||.|||+ |||+++++++++++|. +|.|..++ ...+|+++. .+......| +|++++++
T Consensus 14 rv~L~GEh~~~~~g~~~l~~-Ai~~~~~v~v~~~~~~--~i~s~~~~----~~~~~~~~~--~~~~~~~~~-~yv~~~i~ 83 (365)
T 3k17_A 14 KLYVAGEYAVVESGHTAILT-AVNRYITLTLEDSERN--ELWIPHYE----NPVSWPIGG--ELKPDGEHW-TFTAEAIN 83 (365)
T ss_dssp EEEEECTTGGGSTTCEEEEE-EEEEEEEEEEEECSSC--EEECTTCS----SCBCCCTTS--CCCCSCGGG-HHHHHHHH
T ss_pred eEEEecccEEecCCCEEEEE-EccCcEEEEEEECCCc--EEEecCCC----cceeeeccc--CCCCCCChH-HHHHHHHH
Confidence 67899998877679999999 9999999999998876 57777652 233444432 122234568 99999988
Q ss_pred HHH----hcCCCCCceEEEEEeCCCC----CCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy9976 87 IFN----DRVAPVPGFNAVILSSVPM----GSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGI 158 (349)
Q Consensus 87 ~l~----~~~~~~~g~~i~i~s~iP~----g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~ 158 (349)
.+. +.+...+||++.|.|+||+ ++|||||||++||++.|++++++.++ ++++++++|+.+|+.++|.+ |.
T Consensus 84 ~~~~~~~~~g~~~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l-~~~~l~~~a~~~E~~~~g~~-~g 161 (365)
T 3k17_A 84 IATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEI-SMLKKFKLAALSHLVVQGNG-SC 161 (365)
T ss_dssp HHHHHHHHTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHHHSSC-CS
T ss_pred HHHHHHHhcCCCCCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCC-Cc
Confidence 653 4566778999999999997 57999999999999999999999999 99999999999999999954 55
Q ss_pred hHHHHHHhccCCeEEEEe-cC----------------------CCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHH
Q psy9976 159 MDQYVSVMGEEGSALLID-CK----------------------THEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRR 215 (349)
Q Consensus 159 ~D~~a~~~gg~~~~~~~d-~~----------------------~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~ 215 (349)
|||++++||| +++++ +. +..++++|++. + +++|++|+.+++|..
T Consensus 162 ~D~~~~~~Gg---~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~--~-~lll~~t~~~~sT~~------- 228 (365)
T 3k17_A 162 GDIASCMYGG---WIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPV--P-TFSVGWTGTPVSTGK------- 228 (365)
T ss_dssp HHHHHHHHCS---EEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCS--S-EEEEEECSCCCCHHH-------
T ss_pred ccHHHHhcCC---EEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCc--c-cEEEEECCCccchHH-------
Confidence 7999999999 66665 32 45677887764 6 899999999998641
Q ss_pred HHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc
Q psy9976 216 AQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEID-RTYKGANALKEGDFETFGKLMNESHDSLRDD 294 (349)
Q Consensus 216 ~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~-rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~ 294 (349)
+++.+.. . ++. .+ .+..+++.++. ++.+++++|+++|++.||++|+++|.+||+
T Consensus 229 -----~~~~v~~----------~-----~~~-~~---~~~~~~~~~~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~- 283 (365)
T 3k17_A 229 -----LVSQIHA----------F-----KQE-DS---KNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQE- 283 (365)
T ss_dssp -----HHHHHHH----------H-----HHH-CH---HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-
T ss_pred -----HHHHHHH----------H-----HHh-Ch---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-
Confidence 1111110 0 000 11 12456777764 589999999999999999999999999998
Q ss_pred cCC------CChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCC-chhhhhhhc
Q psy9976 295 YEV------SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPL-NLRRGRKKK 345 (349)
Q Consensus 295 ~~v------s~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~-~~~~~~~~~ 345 (349)
+++ ++|++|.|++.+++ .|++ +||||||||||+++|++++ .++++++.+
T Consensus 284 l~v~~~~~is~p~ld~l~~~a~~-~Ga~-ak~sGAGgGg~vial~~~~~~~~~l~~~l 339 (365)
T 3k17_A 284 LGTKAGVNIETSLLKELADSAEN-MGGA-GKSSGSGGGDCGIAFSKTKELAEKLVNEW 339 (365)
T ss_dssp HHHHHTCCCSCHHHHHHHHHHHH-TTSE-EEECTTCSSSEEEEEESSHHHHHHHHHHH
T ss_pred hhhhcCCcccCHHHHHHHHHHHh-cCCE-EEecCCCCCCEEEEEECCHHHHHHHHHHH
Confidence 665 99999999999999 5988 9999999999999999874 466666554
|
| >3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=343.06 Aligned_cols=280 Identities=13% Similarity=0.085 Sum_probs=219.3
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|++|+|||+|.++|+.+|++ |||+++++.++++++.+| ++..++. . +++. ..+..+-|.++++.+..
T Consensus 9 KviL~GEhaVv~~G~~Ala~-ai~~~~~v~i~~~~~~~i--~~~~~~~----~--~~~~----~~~~~~~~~~~i~~~~~ 75 (335)
T 3gon_A 9 KLYWAGEYAILEPGQLALIK-DIPIYMRAEIAFSDSYRI--YSDMFDF----A--VDLR----PNPDYSLIQETIALMGD 75 (335)
T ss_dssp EEEEECTTGGGSTTCEEEEE-EEEEEEEEEEEECSSCEE--EETTSSS----C--BCSS----CCTTTHHHHHHHHHHHH
T ss_pred EEEEEeeeeEEcCCCcEEEE-EecceEEEEEEECCCCEE--EEeCCCc----c--cccC----cCCCcHHHHHHHHHHHH
Confidence 78999999999999999999 999999999999877654 5554311 1 1111 01112235566777778
Q ss_pred HHHhcCCCCCceEEEEEeCCCCC---CCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHH
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMG---SGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYV 163 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g---~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a 163 (349)
++.+.+...+||++.|.|++|.+ +|||||||++||++.+++++++.++ ++++++++|+.+|+.++|.||| |||++
T Consensus 76 ~l~~~~~~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~-~~~~l~~la~~~E~~~~g~~sg-~D~a~ 153 (335)
T 3gon_A 76 FLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSV-DQNLLFKLTSAVLLKRGDNGSM-GDLAC 153 (335)
T ss_dssp HHHHTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTTCCSCS-HHHHH
T ss_pred HHHHcCCCCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccc-hHHHHHHHHHHHHHHhcCCCCC-CCcce
Confidence 88888888899999999999987 6999999999999999999999999 9999999999999999999988 79999
Q ss_pred HHhccCCeEEEEecC----------------------CCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHH
Q psy9976 164 SVMGEEGSALLIDCK----------------------THEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSV 221 (349)
Q Consensus 164 ~~~gg~~~~~~~d~~----------------------~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a 221 (349)
++||| +++++.. ....++++.+ +++++++++++.+.+|.. +
T Consensus 154 a~~Gg---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~t~~------------~ 216 (335)
T 3gon_A 154 IAAED---LVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPT--LECDFLVGWTKEVAVSSH------------M 216 (335)
T ss_dssp HHHTS---CEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCC--SCCEEEEEECCCCCCHHH------------H
T ss_pred eecCC---eEEEEeCCccccceeecccchhheecccccceeEEcCCc--cccceEEeecCChhhHHH------------H
Confidence 99999 4555432 1234455444 478999999999887641 1
Q ss_pred HHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc-ccCCCCh
Q psy9976 222 LDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRD-DYEVSCK 300 (349)
Q Consensus 222 ~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~-~~~vs~p 300 (349)
++.+. ....+.. .....+++.++.++|+++|++.||++|+++|.+|++ .+++++|
T Consensus 217 v~~v~------------------~~~~~~~------~~~~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~is~p 272 (335)
T 3gon_A 217 VQQIK------------------QNINQNF------LTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTP 272 (335)
T ss_dssp HHHHG------------------GGCCHHH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCH
T ss_pred HHHHH------------------HHhHHHH------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcCCCH
Confidence 12121 1112221 122334589999999999999999999999999998 5689999
Q ss_pred hHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCC-chhhhhhh
Q psy9976 301 ELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPL-NLRRGRKK 344 (349)
Q Consensus 301 ~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~-~~~~~~~~ 344 (349)
++|.|++.|++ .|+ |+||||||||||+|+|++++ .+++++++
T Consensus 273 ~ld~l~~~a~~-~g~-~akltGAG~Ggc~ial~~~~~~~~~i~~~ 315 (335)
T 3gon_A 273 LLRQLKEASQD-LQA-VAKSSGAGGGDCGIALSFDAQSTKTLKNR 315 (335)
T ss_dssp HHHHHHHTTTT-SSE-EEEECTTCSSSEEEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCc-EEEEccccchheEEEEECCHHHHHHHHHH
Confidence 99999999999 585 89999999999999999864 35555543
|
| >1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-43 Score=339.34 Aligned_cols=293 Identities=21% Similarity=0.276 Sum_probs=222.9
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCC-----C---------
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLT-----P--------- 72 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~-----~--------- 72 (349)
|+.++|||.+ ++||.||++ |||+++++.+++++++.+++.+.+.. ...+|++++..... +
T Consensus 13 rv~L~Geh~d-~~g~~~l~~-ai~~~~~v~v~~~~~~~i~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
T 1kvk_A 13 KVILHGEHAV-VHGKVALAV-ALNLRTFLVLRPQSNGKVSLNLPNVG----IKQVWDVATLQLLDTGFLEQGDVPAPTLE 86 (395)
T ss_dssp EEEEECTTGG-GGTCCEEEE-EEEEEEEEEEEECSSSEEEEEETTTT----EEEEEEHHHHHTSCC--------------
T ss_pred EEEEecCCee-eECCEeeee-EeeccEEEEEEECCCCeEEEEcCCCC----ceEEEEhHhhhhhhcccccccccccccHH
Confidence 4568899875 779999999 99999999999999999999887641 12345443110000 0
Q ss_pred ---------CCcCHhHH-----HHHHHHHHHhc-CC--CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCC---
Q psy9976 73 ---------GAPKWANY-----VKGVVSIFNDR-VA--PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDE--- 132 (349)
Q Consensus 73 ---------~~~~w~~~-----v~~~~~~l~~~-~~--~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~--- 132 (349)
....|.|| ++.++..+.+. +. ..+||++.+.|+||+|+|||||||++||++.|++++++.
T Consensus 87 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~~~ 166 (395)
T 1kvk_A 87 QLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTN 166 (395)
T ss_dssp --CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccccCCCCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHhCcccc
Confidence 02378898 44554444332 32 257999999999999999999999999999999999998
Q ss_pred --CCCC-------H---HHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeC
Q psy9976 133 --KTLK-------L---TDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINS 200 (349)
Q Consensus 133 --~~~~-------~---~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s 200 (349)
++ + + .+++++|+.+|+.++|.|||+ ||+++++|| +++++ +..++++|.+ ++++++|++|
T Consensus 167 ~~~l-~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D~~~~~~Gg---~~~~~--~~~~~~l~~~--~~~~~vl~~~ 237 (395)
T 1kvk_A 167 PLKD-RGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-DNSVSTWGG---ALRYQ--QGKMSSLKRL--PALQILLTNT 237 (395)
T ss_dssp GGGG-CCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-HHHHHHHCS---EEEES--SSCEEECSCC--CCEEEEEEEC
T ss_pred cccc-cccccccchhhHHHHHHHHHHhhheEecCCCCc-chHHhhhcc---eEEEc--CCCceeccCC--CCcEEEEEEC
Confidence 77 7 7 556666889999999999999 999999998 56653 4467777754 5899999999
Q ss_pred CCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHH
Q psy9976 201 NVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKG-ANALKEGDFET 279 (349)
Q Consensus 201 ~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~-~~al~~~d~~~ 279 (349)
+++++|.. .+...|... ..+ .+.+ +..++++.|++.|+.|+... ..+|.++|++.
T Consensus 238 ~~~~~T~~-~~~~~~~~~----~~~---------~~~~----------~~~~~~~~~~~~~~~~~l~~~~~al~~~d~~~ 293 (395)
T 1kvk_A 238 KVPRSTKA-LVAGVRSRL----IKF---------PEIM----------APLLTSIDAISLECERVLGEMAAAPVPEQYLV 293 (395)
T ss_dssp CCCCCHHH-HHHHHHHHH----HHS---------HHHH----------HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred CCCCchHH-HHHHHHHHH----HHC---------HHHH----------HHHHHHHHHHHHHHHHHHHhhhccccHHHHHH
Confidence 99998742 222111000 000 0111 12356778888888776655 57788899999
Q ss_pred HHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhh
Q psy9976 280 FGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRG 341 (349)
Q Consensus 280 lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~ 341 (349)
||++|+++|.++++ |++++|++|.+++.+++ .|+ |+||||||||||+++|++++..+++
T Consensus 294 lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~-~Ga-ga~~sGaG~Gg~v~~l~~~~~~~~~ 352 (395)
T 1kvk_A 294 LEELMDMNQHHLNA-LGVGHASLDQLCQVTAA-HGL-HSKLTGAGGGGCGITLLKPGLERAK 352 (395)
T ss_dssp HHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHH-TTC-EEEECSSCSSSEEEEEECTTCCHHH
T ss_pred HHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCC-ceeeccCCCCCEEEEEecCCCCHHH
Confidence 99999999999997 99999999999999999 599 9999999999999999998754443
|
| >2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=306.21 Aligned_cols=277 Identities=19% Similarity=0.230 Sum_probs=217.2
Q ss_pred HHhhhhhceeeeCCcEEEecccccce-EEEEEEecCCCe-EEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVV-TVLLGSRNNSNQ-IHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGV 84 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~-~~v~~~~~~d~~-i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~ 84 (349)
|+.++||+.. ++++.+|++ +||++ +++++++++++. +++.+..+. .+++ ..+.|.|+++++
T Consensus 14 kinL~Ge~~d-~~g~~~l~~-ai~~~~~~v~v~~~~~~~~i~~~~~~~~--------~~~~-------~~~~~~~~v~~~ 76 (308)
T 2x7i_A 14 KIILIGEHAV-TFGEPAIAV-PFNAGKIKVLIEALESGNYSSIKSDVYD--------GMLY-------DAPDHLKSLVNR 76 (308)
T ss_dssp EEEEEEBTTC-CTTSCEEEE-EEEEEEEEEEEEECCTTCCCEEEEEECS--------SCCC-------CTTSCHHHHHHH
T ss_pred EEEEEecCee-ecCCeEEEE-EEcCCEEEEEEEECCCCCeeEEEecCCC--------CChh-------hhhHHHHHHHHH
Confidence 4456799865 899999999 99995 889999887766 777765421 0121 123689999999
Q ss_pred HHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q psy9976 85 VSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVS 164 (349)
Q Consensus 85 ~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~ 164 (349)
+..+.+. .+|++|.+.++||+++|||||||+++|++.|++++++.++ ++++++++|+++|+.++|.|||. |+.++
T Consensus 77 ~~~~~~~---~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l-~~~~l~~la~~~E~~~~g~~sG~-d~~~~ 151 (308)
T 2x7i_A 77 FVELNNI---TEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSL-TKEELIEKANWAEQIAHGKPSGI-DTQTI 151 (308)
T ss_dssp HHHHTTC---CSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHSSCCHH-HHHHH
T ss_pred HHHHHhh---CCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHCCCCchH-HHHHh
Confidence 9888643 3599999999999999999999999999999999999999 99999999999999999999998 99999
Q ss_pred HhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhc
Q psy9976 165 VMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQ 244 (349)
Q Consensus 165 ~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~ 244 (349)
.+|| .++++ ++..++++|++ +++.+++++++.+++|.. .+ +.+.. . .
T Consensus 152 ~~g~---~~~~~-~g~~~~~~~~~--~~~~~vi~~~~~~~sT~~-~~-----------~~l~~-----~----~------ 198 (308)
T 2x7i_A 152 VSGK---PVWFQ-KGHAETLKTLS--LDGYMVVIDTGVKGSTRQ-AV-----------HDVHK-----L----C------ 198 (308)
T ss_dssp HHTS---CEEEE-TTEEEECSCCC--BSSEEEEEECCC--CCSC-CC-----------C---------------------
T ss_pred hCCc---eEEEE-cCCCceEeccC--CCceEEEEECcCCCCHHH-HH-----------HHHHH-----H----H------
Confidence 9987 56777 45556666654 378899999999888752 11 11110 0 0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccC
Q psy9976 245 KLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGG 324 (349)
Q Consensus 245 ~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG 324 (349)
. .++..++ ..+ +. .++.++.++|+++|++.||++|+++|..+++ +++++|+++.+++.+++ .|++|+||||+|
T Consensus 199 ~-~~~~~~~-~~~-~~--~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG 271 (308)
T 2x7i_A 199 E-DPQYMSH-VKH-IG--KLVLRASDVIEHHKFEALADIFNECHADLKA-LTVSHDKIEQLMKIGKE-NGAIAGKLTGAG 271 (308)
T ss_dssp ---CCHHHH-HHH-HH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHH-TTCSEEEESBTT
T ss_pred h-cCchHHH-HHH-HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH-CCCcEEEeeccC
Confidence 0 0111111 222 22 2478889999999999999999999999998 79999999999999999 699999999999
Q ss_pred ccceeEEEeCC-Cchhhhhhhc
Q psy9976 325 FGGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 325 ~GG~~i~l~~~-~~~~~~~~~~ 345 (349)
+|||+++|+++ +.++++.+++
T Consensus 272 ~GG~v~~l~~~~~~~~~~~~~l 293 (308)
T 2x7i_A 272 RGGSMLLLAKDLPTAKNIVKAV 293 (308)
T ss_dssp TCSSEEEEESSHHHHHHHHHHH
T ss_pred CCcEEEEEeCChhHHHHHHHHH
Confidence 99999999998 6677776654
|
| >4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=298.16 Aligned_cols=273 Identities=24% Similarity=0.344 Sum_probs=205.4
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+.++||+ .+.+||.+|++ |||+++++++++.++ ++|.+... .. .++ .... |+++.+..
T Consensus 29 kinL~GeH-~~~~Gg~~l~~-aI~~~~~v~v~~~~~--i~i~~~~~------~~--~~~------~~~~---~~~~~~~~ 87 (321)
T 4hac_A 29 KIYLFGEH-AVVYGETAIAC-AVELRTRVRAELNDS--ITIQSQIG------RT--GLD------FEKH---PYVSAVIE 87 (321)
T ss_dssp EEEEECTT-TGGGTCCEEEE-EEEEEEEEEEEECSS--EEEEETTE------EE--SSC------TTTS---HHHHHHHH
T ss_pred EEEEEccC-EEEcCCEEEEE-EeccCEEEEEEECCC--EEEEECCC------Cc--ccc------cchh---HHHHHHHH
Confidence 34566754 56689999999 999999999987543 88887652 00 111 1122 44455555
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+.+.+ ..+|+++.+.++||+++|||||||+++|++.|++++++.++ ++++++++|.++|+.++|.+ |.+|++++++
T Consensus 88 ~l~~~~-~~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l-~~~~l~~la~~~e~~~~g~~-~~~D~~~~~~ 164 (321)
T 4hac_A 88 KMRKSI-PINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGL-SLQEIAKLGHEIEIKVQGAA-SPTDTYVSTF 164 (321)
T ss_dssp HHTTTS-CCCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHSCC-CSHHHHHHHH
T ss_pred HHHHhC-CCCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCC-cHHHHHHHHc
Confidence 555444 46799999999999999999999999999999999999999 99999999999999999995 5569999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
|| ++++ ... +.+++ |+++++|++|+++++|.. .|. .++.+.. .
T Consensus 165 Gg---~~~~-~~~---~~l~~---p~~~~vlv~p~~~~sT~~-~~~--------~~~~l~~------------------~ 207 (321)
T 4hac_A 165 GG---VVTI-PER---RKLKT---PDCGIVIGDTGVFSSTKE-LVA--------NVRQLRE------------------S 207 (321)
T ss_dssp CS---EEEE-TTC---CEECC---CCCEEEEEECCCCCCHHH-HHH--------HHHHHHH------------------H
T ss_pred CC---eEEE-cCC---ceecc---CCCEEEEEECCCCccHHH-HHH--------HHHHHHh------------------c
Confidence 98 5665 222 23443 378899999999988642 111 1111110 0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 247 LSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 247 l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
.+...+...+.+.+. +.++.++|.++|++.||++|+++|..+ +.+++++|+++++++.+++ .|++|+||||+|+|
T Consensus 208 -~~~~~~~~~~~~~~~--~~~~~~al~~~d~~~lg~~~~~~~~~~-~~~~v~~p~l~~l~~~a~~-~Ga~ga~~SGaG~G 282 (321)
T 4hac_A 208 -YPDLIEPLMTSIGKI--SRIGEQLVLSGDYASIGRLMNVNQGLL-DALGVNILELSQLIYSARA-AGAFGAKITGAGGG 282 (321)
T ss_dssp -CHHHHHHHHHHHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHTCCCHHHHHHHHHHHH-TTCSEEEECSSCSS
T ss_pred -CHHHHHHHHHHHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHH-hhcCCCCHHHHHHHHHHHH-CCCCEEEECccCCC
Confidence 111112222233332 678899999999999999999998755 4589999999999999999 69999999999999
Q ss_pred ceeEEEeCCCchhhhhhhc
Q psy9976 327 GCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~~~~~~~~~~ 345 (349)
||+++|++++.++++.+.+
T Consensus 283 G~v~al~~~~~a~~~~~~l 301 (321)
T 4hac_A 283 GCMVALTAPEKCNQVAEAV 301 (321)
T ss_dssp SEEEEEECSTTHHHHHHHH
T ss_pred CEEEEEcCHHHHHHHHHHH
Confidence 9999999777777777655
|
| >1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=297.49 Aligned_cols=282 Identities=21% Similarity=0.292 Sum_probs=214.3
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+.++|||.+. +|+.+|++ |||+++++.++++++..+++.+... ....+|++++ .+...+.+| ++++.++.
T Consensus 13 ki~L~geh~~~-~G~~~l~~-ai~~~~~v~v~~~~~~~i~i~~~~~----~~~~~~~~~~--~~~~~~~~~-~~~~~~~~ 83 (317)
T 1kkh_A 13 KVILFGEHAVV-YGYRAISM-AIDLTSTIEIKETQEDEIILNLNDL----NKSLGLNLNE--IKNINPNNF-GDFKYCLC 83 (317)
T ss_dssp EEEEECTTGGG-GTCCEEEE-EEEEEEEEEEEECCSSEEEEEETTT----TEEEEEETTT--GGGCCGGGS-GGGHHHHH
T ss_pred EEEEEcCCeeE-cCCEEEEE-EecCeEEEEEEECCCCeEEEEeCCC----CCceEEEecc--CCccCcccc-hHHHHHHH
Confidence 45678998765 67789999 9999999999998888898887653 1234455431 111223467 66777766
Q ss_pred HHHhc----CC-CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy9976 87 IFNDR----VA-PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQ 161 (349)
Q Consensus 87 ~l~~~----~~-~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~ 161 (349)
.+... +. ..+|++|.+.++||+++|||||||+++|++.|++++++.++ ++++++++|+++|+.++|.|+| +|+
T Consensus 84 ~~~~~~~~~~~~~~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l-~~~~l~~~a~~~E~~~~g~~sg-~D~ 161 (317)
T 1kkh_A 84 AIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKEL-KDDEIAKLGYMVEKEIQGKASI-TDT 161 (317)
T ss_dssp HHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHHHHHSSSCCS-HHH
T ss_pred HHHHHHHhhcccCCCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCch-HHH
Confidence 65431 32 24699999999999999999999999999999999999999 9999999999999999999988 599
Q ss_pred HHHHhccCCeEEEEecCCCeeEEeeCCCCC-----CeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHH
Q psy9976 162 YVSVMGEEGSALLIDCKTHEARHIPLGDDH-----QYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236 (349)
Q Consensus 162 ~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~-----~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~ 236 (349)
+++++|| .+++ .+..+++++++. | ++.+++++|+.+++|.. +.+.+.. ++
T Consensus 162 ~~~~~Gg---~~~~--~~~~~~~~~~~~-~~~l~~~~~~vl~~~~~~~~T~~------------~~~~~~~--~~----- 216 (317)
T 1kkh_A 162 STITYKG---ILEI--KNNKFRKIKGEF-EEFLKNCKFLIVYAEKRKKKTAE------------LVNEVAK--IE----- 216 (317)
T ss_dssp HHHHHCS---EEEE--SSSCEEEECHHH-HHHHHTCCEEEEEEECCCSCHHH------------HHHHHHT--CT-----
T ss_pred HHHHhCC---eEEE--cCCCceEecCCc-ccccccCcEEEEEECCCcCcHHH------------HHHHHHH--hh-----
Confidence 9999998 4455 345577776432 1 25899999999887641 1111210 00
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCe
Q psy9976 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316 (349)
Q Consensus 237 ~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~ 316 (349)
+. ...+.+.. ..+.+++..+|++.|+++|+++|..+++ +++++|+++.+++.+++ .| +
T Consensus 217 -----------~~------~~~~~~~~--~~~~~a~~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~-~G-~ 274 (317)
T 1kkh_A 217 -----------NK------DEIFKEID--KVIDEALKIKNKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNR-FG-F 274 (317)
T ss_dssp -----------TH------HHHHHHHH--HHHHHHHHCCSHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHH-HS-S
T ss_pred -----------cc------HHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHh-cC-c
Confidence 00 01112221 2245678889999999999999998876 79999999999999999 59 9
Q ss_pred EEEecccCccceeEEEeCCCchhhhhhhcc
Q psy9976 317 GCRMTGGGFGGCAIALVSPLNLRRGRKKKS 346 (349)
Q Consensus 317 gakltGaG~GG~~i~l~~~~~~~~~~~~~~ 346 (349)
|+||||+|+|||+++|++++.++++.+.++
T Consensus 275 ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~ 304 (317)
T 1kkh_A 275 GAKLTGAGGGGCVIILVNEEKEKELLKELN 304 (317)
T ss_dssp EEEECSSSSSEEEEEECCGGGHHHHHHHHH
T ss_pred eeEEeecCCCCEEEEEechhhHHHHHHHHH
Confidence 999999999999999999887777776653
|
| >2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=290.55 Aligned_cols=281 Identities=20% Similarity=0.282 Sum_probs=209.5
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecC-CCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNN-SNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVV 85 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~-d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~ 85 (349)
|+.++|||.+ .+||.+|++ +||+++++.+++++ ++.+++.+... .++. ....+.|.+..++
T Consensus 21 Ki~L~Geh~~-~~G~~~l~~-ai~~~~~v~v~~~~~~~~~~~~~~~~----------~~~~------~~~~~~~~~~~a~ 82 (332)
T 2hfs_A 21 KVILFGEHFV-VHGAEAIVA-GISEYTECRLEINPGVPGLQVDDQRP----------AIPG------YIAQKRDEQIKAH 82 (332)
T ss_dssp EEEEECTTGG-GGTCCEEEE-EEEEEEEEEEEEETTCCSEEEEECCC----------CCTT------HHHHHHHHHHHHH
T ss_pred EEEEecCCEE-EcCCeEEEE-EecccEEEEEEEcCCCCCeEEEecCc----------cccc------cccccchhHHHHH
Confidence 4567787655 478999999 99999999998875 45566644321 1110 0012335555555
Q ss_pred HHH-HhcCCCC--CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy9976 86 SIF-NDRVAPV--PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQY 162 (349)
Q Consensus 86 ~~l-~~~~~~~--~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~ 162 (349)
..+ ...+... +|++|.+.++||+++|||||||+++|++.|++++++.++ ++++++++|+++|+.++|.|+|. |++
T Consensus 83 ~~~~~~~g~~~~~~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l-~~~~l~~~a~~~E~~~~G~~~G~-D~~ 160 (332)
T 2hfs_A 83 QLVLDHLKVDLSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNL-TDEEVNLSAFVGEGGYHGTPSGA-DNT 160 (332)
T ss_dssp HHHHHHTTBCCSSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHGGGSSSCCCSH-HHH
T ss_pred HHHHHHcCCccCCCceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCCcH-hHH
Confidence 544 3344432 699999999999999999999999999999999999999 99999999999999999999999 999
Q ss_pred HHHhccCCeEEEEecCC-C-eeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHH
Q psy9976 163 VSVMGEEGSALLIDCKT-H-EARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLED 240 (349)
Q Consensus 163 a~~~gg~~~~~~~d~~~-~-~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~ 240 (349)
++++|| +++++... . .+++++++ ++++++|++|+.+++|. ..|...+ .+ ++.
T Consensus 161 ~~~~Gg---~~~~~~~~g~~~~~~~~~~--~~~~~vl~~~~~~~~T~-~~~~~~~--------~~-----~~~------- 214 (332)
T 2hfs_A 161 AATYGG---LILYRRQNGKSVFKPIAFQ--QRLYLVVVGTGINASTA-KVVNDVH--------KM-----KQQ------- 214 (332)
T ss_dssp HHHHCE---EEEEEECSSSEEEEEECCC--SCEEEEEEECSCCCCHH-HHHHHHH--------HH-----HHH-------
T ss_pred HHhcCC---eEEEecCCCCcceeeecCC--CCcEEEEEECCCCccHH-HHHHHHH--------HH-----HHh-------
Confidence 999998 55565322 2 46777765 48999999999998863 2222110 00 000
Q ss_pred HHhcccCCHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEE
Q psy9976 241 KHAQKLLSDEEYKRGHHVVTEI-DRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319 (349)
Q Consensus 241 ~~~~~~l~~~~~~r~~~~i~e~-~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gak 319 (349)
++..++. ++... +++.++.++|+++|++.|+++|+++|..++. +++++|+++.+++.+++ .|++|+|
T Consensus 215 -------~~~~~~~---~~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~ 282 (332)
T 2hfs_A 215 -------QPVQFKR---LYDNYTHIVSQAREALQKGDLQRLGQLMNANHDLCRQ-IDVSCRELESIVQTCRT-YGALGAK 282 (332)
T ss_dssp -------CHHHHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHH-TTCSEEE
T ss_pred -------CHHHHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCCceEE
Confidence 1111111 11111 2367889999999999999999999998887 78999999999999999 6999999
Q ss_pred ecccCccceeEEEeCCCc-hhhhhhhc
Q psy9976 320 MTGGGFGGCAIALVSPLN-LRRGRKKK 345 (349)
Q Consensus 320 ltGaG~GG~~i~l~~~~~-~~~~~~~~ 345 (349)
|||+|+|||+++|++++. ++++.+.+
T Consensus 283 ~sGaG~gg~v~~l~~~~~~a~~~~~~l 309 (332)
T 2hfs_A 283 LSGTGRGGIAVALAASSDQRDAIVKGL 309 (332)
T ss_dssp EESSCSSSEEEEEESSHHHHHHHHHHH
T ss_pred eccCCCCcEEEEEecCcccHHHHHHHH
Confidence 999999999999998764 55665543
|
| >2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=284.14 Aligned_cols=265 Identities=20% Similarity=0.238 Sum_probs=199.6
Q ss_pred HHhhhhhceeeeCCcEEEecccc-cceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVR-QVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVV 85 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai-~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~ 85 (349)
|+.++||+.. .+|+.+|++ +| |+++++.+++++ +.+++.+. ...|.+..+.
T Consensus 13 ki~L~Ge~~~-~~g~~~l~~-ai~~~~~~v~v~~~~-~~~~i~~~-------------------------~~~~~~~~~~ 64 (292)
T 2oi2_A 13 KIILIGEHAV-VYGYPAISL-PLLEVEVTCKVVPAE-SPWRLYEE-------------------------DTLSMAVYAS 64 (292)
T ss_dssp EEEEECTTGG-GGTCCEEEE-EEEEEEEEEEEEECS-SCCCCCCC-------------------------SHHHHHHHHH
T ss_pred EEEEEeCCee-ecCCcEEEE-EEcCcEEEEEEEECC-CceEEEec-------------------------Cccchhhhhh
Confidence 4567899865 588889999 99 999999998753 22222110 1124444444
Q ss_pred HHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Q psy9976 86 SIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSV 165 (349)
Q Consensus 86 ~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~ 165 (349)
..+. +...+|++|.+.++||+++|||||||+++|++.|++++++.++ ++++++++|.++|+.++|.|+|+ |+++++
T Consensus 65 ~~~~--~~~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l-~~~~l~~la~~~E~~~~~~p~g~-d~~~~~ 140 (292)
T 2oi2_A 65 LEYL--NITEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADL-PHDVLEILVNRAEMIAHMNPSGL-DAKTCL 140 (292)
T ss_dssp HHHH--TCSCCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHTTCCCCSH-HHHHHT
T ss_pred HHHh--cccCCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCCch-hHHHHh
Confidence 4332 4435699999999999999999999999999999999999999 99999999999999899999997 999999
Q ss_pred hccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcc
Q psy9976 166 MGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQK 245 (349)
Q Consensus 166 ~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~ 245 (349)
+|| ++++ .+...++++|++. +.+ +++++++.+++|.. +.+.+....
T Consensus 141 ~gg---~~~~-~~~~~~~~~~~~~-~~~-~~i~~~~~~~sT~~------------~~~~l~~~~---------------- 186 (292)
T 2oi2_A 141 SDQ---PIRF-IKNVGFTELEMDL-SAY-LVIADTGVYGHTRE------------AIQVVQNKG---------------- 186 (292)
T ss_dssp CSS---CEEE-ETTTEEEECCCCC-SCE-EEEEECSSCCCHHH------------HHHHHHHTG----------------
T ss_pred cCc---eEEE-EcCCCceeecCCC-CCE-EEEEECCCCCcHHH------------HHHHHHHHH----------------
Confidence 998 4555 3455677777654 455 89999998887642 122221100
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCc
Q psy9976 246 LLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGF 325 (349)
Q Consensus 246 ~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~ 325 (349)
+. .++..+.+.+. +.++.++|.++|++.|+++|+++|..+++ +++++|+++.+++.+++ .|++|+||||+|+
T Consensus 187 --~~--~~~~~~~~~~~--~~~~~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~ 258 (292)
T 2oi2_A 187 --KD--ALPFLHALGEL--TQQAEIAISQKDAEGLGQILSQAHLHLKE-IGVSSLEADSLVETALS-HGALGAKMSGGGL 258 (292)
T ss_dssp --GG--GHHHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHT-TTCSEEEEESSSS
T ss_pred --hh--hHHHHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHh-CCCceeeeccCCC
Confidence 00 01223333333 67888999999999999999999999987 79999999999999999 6999999999999
Q ss_pred cceeEEEeCC-Cchhhhhhhc
Q psy9976 326 GGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 326 GG~~i~l~~~-~~~~~~~~~~ 345 (349)
|||+++|+++ +.++++.+.+
T Consensus 259 Gg~v~~l~~~~~~~~~~~~~l 279 (292)
T 2oi2_A 259 GGCIIALVTNLTHAQELAERL 279 (292)
T ss_dssp SSEEEEEESCHHHHHHHHHHH
T ss_pred CcEEEEEecCchHHHHHHHHH
Confidence 9999999987 5677766654
|
| >1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=252.60 Aligned_cols=254 Identities=18% Similarity=0.187 Sum_probs=196.7
Q ss_pred EEecccccc-eEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhc-CCCCCceEE
Q psy9976 23 IIMMDVRQV-VTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDR-VAPVPGFNA 100 (349)
Q Consensus 23 vl~~~Ai~~-~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~-~~~~~g~~i 100 (349)
|+++ ++|. ++++++++++++.+++.+... .++ .+.|.|++..+++.+.+. +.. .|++|
T Consensus 20 vl~~-a~d~~~~~~~~~~~~~~~~~i~~~~~----------~~~--------~~~~~n~v~~a~~~~~~~~g~~-~g~~i 79 (296)
T 1h72_C 20 VFGL-CLKEPYDVIEVEAIDDKEIIIEVDDK----------NIP--------TDPDKNVAGIVAKKMIDDFNIG-KGVKI 79 (296)
T ss_dssp TEEE-EEEEEEEEEEEEEESSSSEEEEESCT----------TSC--------CCTTTSHHHHHHHHHHHHTTCC-CEEEE
T ss_pred hhHH-hcccccEEEEEEecCCCeEEEEEcCC----------cCC--------CCCccCcHHHHHHHHHHHhCCC-CCeEE
Confidence 8999 9998 566677776666677664321 011 123789999999887664 433 69999
Q ss_pred EEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCC
Q psy9976 101 VILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTH 180 (349)
Q Consensus 101 ~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~ 180 (349)
.+.++||+|+|||||||+++|++.|++++++.++ ++++++++|.++|..++|.|++. |..++++||. +++.+..+.
T Consensus 80 ~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l-~~~~l~~la~~~e~~~~g~~~~d-dv~~~~~gg~--~~~~~~~~~ 155 (296)
T 1h72_C 80 TIKKGVKAGSGLGSSAASSAGTAYAINELFKLNL-DKLKLVDYASYGELASSGAKHAD-NVAPAIFGGF--TMVTNYEPL 155 (296)
T ss_dssp EEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHSSCCCT-THHHHHHCSE--EEEEETTTT
T ss_pred EEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHhcCcccCCCCcc-chHHHHhCCE--EEEEeCCce
Confidence 9999999999999999999999999999999999 99999999999999999999974 6666999982 344445555
Q ss_pred eeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy9976 181 EARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVT 260 (349)
Q Consensus 181 ~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~ 260 (349)
.++++++| ++++++|++|+++.+|. ++.+.+.. ..+ ..+.+.
T Consensus 156 ~~~~~~~~--~~~~~vl~~p~~~~~T~------------~~~~~l~~------------------~~~------~~~~~~ 197 (296)
T 1h72_C 156 EVLHIPID--FKLDILIAIPNISINTK------------EAREILPK------------------AVG------LKDLVN 197 (296)
T ss_dssp EEEEECCC--SCCCEEEECCSSCCCHH------------HHHHTSCS------------------CCC------HHHHHH
T ss_pred EEEEEcCC--CCeEEEEEeCCCCccHH------------HHHHhccC------------------cCc------HHHHHH
Confidence 57888776 37889999999876653 22223321 001 234556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH--HHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCch
Q psy9976 261 EIDRTYKGANALKEGDFETFGKLM--NESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNL 338 (349)
Q Consensus 261 e~~rv~~~~~al~~~d~~~lg~lm--~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~ 338 (349)
+..|+.++.++|.++|++.||++| |..|+.++. .++|+++.+++.+++ . ++|++|||+| +|+++|++++.+
T Consensus 198 ~~~~~~~~~~al~~~d~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~-~-a~ga~~sGsG--~~v~~l~~~~~~ 270 (296)
T 1h72_C 198 NVGKACGMVYALYNKDKSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKD-K-VYGITISGSG--PSIIAFPKEEFI 270 (296)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTT-T-EEEEEECTTS--SCEEEEECGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHh-h-cceEEEecCC--hheEEEecHHHH
Confidence 666788899999999999999999 556666654 799999999999999 5 7999999998 599999976777
Q ss_pred hhhhhhc
Q psy9976 339 RRGRKKK 345 (349)
Q Consensus 339 ~~~~~~~ 345 (349)
+++.+.+
T Consensus 271 ~~~~~~l 277 (296)
T 1h72_C 271 DEVENIL 277 (296)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
|
| >3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=216.81 Aligned_cols=247 Identities=15% Similarity=0.141 Sum_probs=171.3
Q ss_pred EEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCCCceEEEE
Q psy9976 23 IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVI 102 (349)
Q Consensus 23 vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~i 102 (349)
+|.+ |||++.++.+++. ++.+++..... . .++. ++ .|++..++..+.+ ...|++|.+
T Consensus 20 ~lg~-al~l~d~v~~~~~-~~~~~i~~~~~-----~----~~p~------~~---~nlv~~a~~~~~~---~~~g~~i~i 76 (298)
T 3hul_A 20 SCGL-ALTLYLTLDIGAE-ADSWYIEHNIG-----G----GIPH------DE---TNVIIETALNLAP---NLTPHHLVM 76 (298)
T ss_dssp TEEE-EEEEEEEEEEEEE-CSSCEEECCCC-----T----TCCS------ST---TSHHHHHHHHHCT---TCCCEEEEE
T ss_pred hhhh-hcccceEEEEEEc-CCceEEEecCc-----c----cCCC------CC---CcHHHHHHHHHhc---cCCceEEEE
Confidence 6667 9999999988753 34455554321 0 1110 11 2566666666654 356999999
Q ss_pred EeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCee
Q psy9976 103 LSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEA 182 (349)
Q Consensus 103 ~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~ 182 (349)
.++||+++|||||||+++|++.|++++++.++ +++++++++.++| |.| .|.+++++|| +.+....+..+
T Consensus 77 ~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l-~~~el~~la~~~e----g~~---ddv~~~~~GG---~~~~~g~ge~~ 145 (298)
T 3hul_A 77 TCDIPPARGLGSSSAAVVAGIELANTLAELNL-SKEEKVRIAAEIE----GHP---DNVAPAVLGN---WVVGAKLDGED 145 (298)
T ss_dssp EECSCTTSSSSHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHH----SCS---TTHHHHHHCS---EEEEEEETTEE
T ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHhc----CCc---ccCcccccCC---EEEEEeCCCcE
Confidence 99999999999999999999999999999999 9999999999998 444 2566788999 44433333344
Q ss_pred EEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q psy9976 183 RHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEI 262 (349)
Q Consensus 183 ~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~ 262 (349)
...+++. |+++++++.++...+|. ++.+.+..+ .+. . ..+.+.
T Consensus 146 ~~~~~~~-p~~~~vlv~p~~~~sT~------------~a~~~l~~~------------------~~~---~---~~~~~~ 188 (298)
T 3hul_A 146 FYVRHLF-PDCALIAFIPKAELLTS------------ESRGVLPDT------------------LPF---K---EAVQAS 188 (298)
T ss_dssp EEEEECC-C-CEEEEEECCCCCC--------------------CCE------------------EEH---H---HHHHHH
T ss_pred EEEEcCC-CCeEEEEEECCCCCCcH------------HHHHHHhhh------------------ccH---H---HHHHHH
Confidence 4334443 57899999999887764 122333210 010 0 122334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH--HHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhh
Q psy9976 263 DRTYKGANALKEGDFETFGKLMNE--SHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRR 340 (349)
Q Consensus 263 ~rv~~~~~al~~~d~~~lg~lm~~--s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~ 340 (349)
.++..++.+|.++|++.++++|+. .|+..+. ..+|+++.+++.+++ .|++|++|||+| +|+++|++++.+++
T Consensus 189 ~~~~~~~~al~~~d~~~l~~~l~nd~~~e~~~~---~~~p~l~~l~~~~~~-~Ga~ga~~SGsG--ptv~al~~~~~a~~ 262 (298)
T 3hul_A 189 SIANVMIAAILRNDMTLAGEMMERDLWHEKYRS---QLVPHLAQIRDVAKN-QGAYAACLSGAG--PTVLVFAPRNLANK 262 (298)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTCCCC-----C---TTGGGHHHHHHHHHT-TTCCEEEECTTS--SCEEEEECGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhhhHHHHHHHH---hhCchHHHHHHHHHH-CCCEEEEEeccc--hheEEEECHHHHHH
Confidence 457889999999999999999963 2454443 258999999999999 699999999998 79999999777777
Q ss_pred hhhhcc
Q psy9976 341 GRKKKS 346 (349)
Q Consensus 341 ~~~~~~ 346 (349)
+.+.++
T Consensus 263 v~~~l~ 268 (298)
T 3hul_A 263 LQTSLQ 268 (298)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
|
| >2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-27 Score=219.79 Aligned_cols=267 Identities=15% Similarity=0.086 Sum_probs=183.9
Q ss_pred ceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCC
Q psy9976 14 LMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVA 93 (349)
Q Consensus 14 ~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~ 93 (349)
|+.++++|+++|. ....++.+. ..+++-+++..+..+ +..++.++.. .....|.|+++.+++.+.+.+.
T Consensus 22 ~~g~~~~g~~lp~-~dslg~al~-~l~~~~~v~~~~~~~-----~~~~~~~~g~----~~~~~~~n~v~~~~~~~~~~~~ 90 (317)
T 2gs8_A 22 YWGKENQAKMIPS-TSSISLTLE-NMFTTTSVSFLPDTA-----TSDQFYINGI----LQNDEEHTKISAIIDQFRQPGQ 90 (317)
T ss_dssp CCCEEETTTTEES-SCEEEEEEE-EEEEEEEEEECCTTC-----CSCEEEETTE----ECCHHHHHHHHHHHTTTCCTTC
T ss_pred eeeeccCCcccCC-CCceEEEee-cccceEEEEEEcCCC-----CeEEEEECCC----ccccchHHHHHHHHHHHHHhcC
Confidence 7889999999988 777776664 344433444322221 1123443311 1123699999999998876554
Q ss_pred CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEE
Q psy9976 94 PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSAL 173 (349)
Q Consensus 94 ~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~ 173 (349)
.|++|.+.++||.++|||||||.++|++.|++++++.++ +++++++++.+.|. +...+++|| ++
T Consensus 91 --~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~l-s~~el~~la~~~~G----------~~~~~~~GG---~~ 154 (317)
T 2gs8_A 91 --AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQL-DQKALAQKAKFASG----------SSSRSFFGP---VA 154 (317)
T ss_dssp --CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHG----------GGGGGGSCS---EE
T ss_pred --CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHhhcc----------hhHhhhcCC---hh
Confidence 789999999999999999999999999999999999999 99999999987752 345578998 55
Q ss_pred EEecCCCeeEEeeCCCCCCeEE--EEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHH
Q psy9976 174 LIDCKTHEARHIPLGDDHQYVF--LIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEE 251 (349)
Q Consensus 174 ~~d~~~~~~~~l~~~~~~~~~~--ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~ 251 (349)
.....+..+...|+|. ++.+ ++++++.++..++..|+.++ .. ++..
T Consensus 155 ~~~~~~~~~~~~~~~~--~~~~~v~i~~~~~~~~~tt~~~~~~~----------~~--------------------~~~~ 202 (317)
T 2gs8_A 155 AWDKDSGAIYKVETDL--KMAMIMLVLNAAKKPISSREGMKLCR----------DT--------------------STTF 202 (317)
T ss_dssp EECTTTCCEEECCCCC--CEEEEEEECCCSSCCSCHHHHHHHHH----------HH--------------------CTTH
T ss_pred eEeeCCCceeEEEccc--cccEEEEEEECCCcCcccHHHHHHHh----------hc--------------------CHHH
Confidence 5554444344455553 5564 44466554443444454221 10 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCC-------hhHHHHHH---HHHcCCCCeEEEec
Q psy9976 252 YKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSC-------KELDDIAH---CAQSLPGVLGCRMT 321 (349)
Q Consensus 252 ~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~-------p~ld~l~~---~a~~~~Ga~gaklt 321 (349)
.+++.+ ...|+..++.||.++|++.||++|+++|..|++.+..++ |.+..+.+ .+++ .|+.++-++
T Consensus 203 ~~~~~~---~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~-~G~~~~~~S 278 (317)
T 2gs8_A 203 DQWVEQ---SAIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQ-EGFACYFTM 278 (317)
T ss_dssp HHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred HHHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHh-cCCcEEEEe
Confidence 112222 244688999999999999999999999988887554444 44455554 4555 598899999
Q ss_pred ccCccceeEEEeCCCchhhhhhhc
Q psy9976 322 GGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 322 GaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
|+| +|+++|++++.++++.+.+
T Consensus 279 GaG--ptv~~l~~~~~~~~v~~~l 300 (317)
T 2gs8_A 279 DAG--PNVKVLCLEKDLAQLAERL 300 (317)
T ss_dssp CSS--SCEEEEEEGGGHHHHHHHH
T ss_pred cCC--CeEEEEEcHHHHHHHHHHH
Confidence 887 9999999988777776654
|
| >3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=213.48 Aligned_cols=250 Identities=14% Similarity=0.174 Sum_probs=179.1
Q ss_pred eCCcE----EEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCC
Q psy9976 18 KRLQW----IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVA 93 (349)
Q Consensus 18 ~~~G~----vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~ 93 (349)
+.+|| .+.+ +||++..+.+++.++..|++..... . .++ . ...|++..++..+.+...
T Consensus 24 r~DGyh~l~s~~~-al~l~D~l~~~~~~~~~i~~~g~~~-----~----~~p------~---~~~Nlv~~A~~~l~~~~g 84 (306)
T 3pyf_A 24 REDGYHELTTVFH-AVSLVDEVTVRNADVLSLELVGEGA-----D----QLP------T---DERNLAWQAAELMAEHVG 84 (306)
T ss_dssp CTTSCCCEEEEEE-EEEEEEEEEEEECSSCEEEEESTTG-----G----GSC------C---STTSHHHHHHHHHHHHTT
T ss_pred CCCCCcchheeEE-EcccCCEEEEEECCCCEEEEeCCCc-----c----CCC------C---CCccHHHHHHHHHHHHhC
Confidence 45565 4446 8888888888776655555543211 0 111 0 124799888887766433
Q ss_pred CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEE
Q psy9976 94 PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSAL 173 (349)
Q Consensus 94 ~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~ 173 (349)
...|++|.+.++||+++|||||||.++|++.+++++++.++ +++++++++.++|. |.+++++|| ..
T Consensus 85 ~~~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l-~~~~l~~la~~~~~----------Dv~~~~~Gg---~~ 150 (306)
T 3pyf_A 85 RAPDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNV-PRRDLRMLAARLGS----------DVPFALHGG---TA 150 (306)
T ss_dssp CCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHCT----------THHHHHHBS---EE
T ss_pred CCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCC----------CCceeecCc---eE
Confidence 34699999999999999999999999999999999999999 99999999999862 999999998 55
Q ss_pred EEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHH
Q psy9976 174 LIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYK 253 (349)
Q Consensus 174 ~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 253 (349)
+....+..+.+++.+ +++++++++|+.+.+|. ..| +.+.... . ...
T Consensus 151 ~~~g~ge~~~~l~~~--~~~~~vl~~P~~~vsT~-~a~-----------~~l~~~~----------~---~~~------- 196 (306)
T 3pyf_A 151 LGTGRGEELATVLSR--NTFHWVLAFADSGLLTS-AVY-----------NELDRLR----------E---VGD------- 196 (306)
T ss_dssp EECSSSSCCEEECCS--SCEEEEEEECSSCCCHH-HHH-----------HHHHHHH----------H---HSC-------
T ss_pred EEEeeCCeEEEccCC--CCcEEEEEECCCCCcHH-HHH-----------Hhhhhhc----------c---ccc-------
Confidence 555555567777765 48999999999987764 222 1221000 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEe
Q psy9976 254 RGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333 (349)
Q Consensus 254 r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~ 333 (349)
+....++..+..+|.++|++.+++.|.. .++......+|+++.+++.+++ .|++|++|||+| +|+++|+
T Consensus 197 -----~~~~~~~~~~~~al~~~d~~~l~~~l~n---~le~~~~~~~P~l~~i~~~~~~-~Ga~ga~mSGsG--ptvfal~ 265 (306)
T 3pyf_A 197 -----PPRLGEPGPVLAALAAGDPDQLAPLLGN---EMQAAAVSLDPALARALRAGVE-AGALAGIVSGSG--PTCAFLC 265 (306)
T ss_dssp -----CCCCCCHHHHHHHHHHTCHHHHGGGCEE---TTHHHHHHHCTHHHHHHHHHHH-TTCSEEEECTTS--SEEEEEE
T ss_pred -----cccccCHHHHHHHHHhCCHHHHHHHhcc---chHHHHHHhChHHHHHHHHHHh-cCCCEEEEcCcc--hhheEEe
Confidence 0000125677889999999999998842 2333212358999999999999 699999999997 9999999
Q ss_pred CCC-chhhhhhhc
Q psy9976 334 SPL-NLRRGRKKK 345 (349)
Q Consensus 334 ~~~-~~~~~~~~~ 345 (349)
+++ .++++.+.+
T Consensus 266 ~~~~~a~~~~~~l 278 (306)
T 3pyf_A 266 TSASSAIDVGAQL 278 (306)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 874 355555443
|
| >3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=206.54 Aligned_cols=271 Identities=15% Similarity=0.102 Sum_probs=185.5
Q ss_pred ceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCC
Q psy9976 14 LMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVA 93 (349)
Q Consensus 14 ~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~ 93 (349)
|+.++++|++||+ ...+++.+. .++++-+++ .+..+ +..++.++.. .+ ...|.|++..++..+.+...
T Consensus 23 y~gk~~~~~~lP~-~dslglal~-~~~~~~~v~-~~~~~-----~~~~~~i~g~-~~---~~~~~n~v~~~~~~~~~~~~ 90 (332)
T 3qt5_A 23 YWGKADETYIIPM-NNSLSVTLD-RFYTETKVT-FDPDF-----TEDCLILNGN-EV---NAKEKEKIQNYMNIVRDLAG 90 (332)
T ss_dssp CCCEEETTTTEES-SCEEEEEEE-EEEEEEEEE-EETTC-----SSCEEEETTE-EC---CHHHHHHHHHHHHHHHHHHT
T ss_pred eeeeccCCccccC-CCceEEEec-CCCCeeEEE-EcCCC-----CccEEEECCc-cC---CcchHHHHHHHHHHHHHhcC
Confidence 8999999999999 888887776 345544555 23332 1234444421 11 23588999999988766433
Q ss_pred CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEE
Q psy9976 94 PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSAL 173 (349)
Q Consensus 94 ~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~ 173 (349)
...|++|.+.++||.++|||||||..+|++.|++++++.++ +++++++++.++| | |...++||| ++
T Consensus 91 ~~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l-~~~el~~la~~~~--------g--~~~~~~~GG---~~ 156 (332)
T 3qt5_A 91 NRLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNL-SDTDLSRLARRGS--------G--SASRSIFGG---FA 156 (332)
T ss_dssp CCCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHC--------G--GGGGGGSCS---EE
T ss_pred CCCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHhc--------C--CchhhhcCC---eE
Confidence 34689999999999999999999999999999999999999 9999999999874 3 556788999 55
Q ss_pred EEecC-CC---eeEEeeCC-CCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCC
Q psy9976 174 LIDCK-TH---EARHIPLG-DDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLS 248 (349)
Q Consensus 174 ~~d~~-~~---~~~~l~~~-~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~ 248 (349)
..+.. .. ...+++.. ..|+++++++.+....++..+. +.+... +. . +
T Consensus 157 ~~~~g~~~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss~------------~~~~~~---------~~----~---s 208 (332)
T 3qt5_A 157 EWEKGHDDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSSR------------SGMSLT---------RD----T---S 208 (332)
T ss_dssp EEECCSSTTTCEEEEECCTTGGGGEEEEEECCCCCCCC--CH------------HHHHHH---------HH----H---C
T ss_pred EEecCCCCccceeeecccccCCCCcEEEEEEEcCCCCCCchH------------HHHHHh---------hh----c---C
Confidence 54421 11 12455411 1157888888877654433211 111100 00 0 0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhhhccc-------CCCChhHHHHHHHHH---cCCCCeE
Q psy9976 249 DEEYKRGHHVVTEID-RTYKGANALKEGDFETFGKLMNESHDSLRDDY-------EVSCKELDDIAHCAQ---SLPGVLG 317 (349)
Q Consensus 249 ~~~~~r~~~~i~e~~-rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~-------~vs~p~ld~l~~~a~---~~~Ga~g 317 (349)
. .++ +.+.+.. |+..++.||.++|++.|+++|..++..|...+ -..+|+++.+++.++ + .|++|
T Consensus 209 ~-~~~---~~v~~~~~~~~~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~-~Ga~~ 283 (332)
T 3qt5_A 209 R-FYQ---YWLDHVDEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRK-ANLPC 283 (332)
T ss_dssp T-THH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCE
T ss_pred h-hHH---HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHh-CCCcE
Confidence 0 011 1122233 58899999999999999999985544443322 125799999988884 7 69999
Q ss_pred EEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 318 CRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 318 akltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
+.++|+| +|+++|++++.++++.+.+
T Consensus 284 a~~SGaG--Ptv~~l~~~~~a~~v~~~l 309 (332)
T 3qt5_A 284 YFTMDAG--PNVKVLVEKKNKQAVMEQF 309 (332)
T ss_dssp EEECCSS--SCEEEEEEHHHHHHHHHHH
T ss_pred EEEeCCC--CcEEEEECHHHHHHHHHHH
Confidence 9999886 9999999987777776654
|
| >2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=206.55 Aligned_cols=226 Identities=10% Similarity=0.058 Sum_probs=165.0
Q ss_pred EEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCCCceEEE
Q psy9976 22 WIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAV 101 (349)
Q Consensus 22 ~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~ 101 (349)
.++++ +||+++++ +++ ++.+++.+ . .++ ..|.|++..+++.+.+.....+|++|.
T Consensus 31 ~sl~~-ai~l~~~v-~~~--~~~i~i~~-~-----------~~~---------~~~~nlv~~a~~~~~~~~g~~~g~~i~ 85 (271)
T 2v8p_A 31 LTLYQ-EIPFYDEI-YIR--EGVLRVET-N-----------IGI---------PQEENLVYKGLREFERITGIEINYSIF 85 (271)
T ss_dssp EEEEE-EEEEEEEE-EEE--ESSCEEEE-S-----------SCC---------CTTTCHHHHHHHHHHHHHCCCCCEEEE
T ss_pred EEEEE-EcCcccEE-EEe--CCeEEEEe-C-----------CCC---------CCCchHHHHHHHHHHHHhCCCCCeEEE
Confidence 48989 99999999 877 44566554 1 011 136789999888776542223799999
Q ss_pred EEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCe
Q psy9976 102 ILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHE 181 (349)
Q Consensus 102 i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~ 181 (349)
+.++||+++|||||||.++|++.|++++++.++ ++++++++|.++|. |..++++|| +.+....+..
T Consensus 86 i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l-~~~el~~la~~~e~----------dv~~~~~gg---~~~~~g~g~~ 151 (271)
T 2v8p_A 86 IQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPL-SEEELRELVGSISA----------DAPFFLLGK---SAIGRGKGEV 151 (271)
T ss_dssp EECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCS-CHHHHHHHHHHHCT----------TTGGGGTCS---EEEEETTTTE
T ss_pred EEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHhCC----------CHHHHhcCC---eEEEEEcCCE
Confidence 999999999999999999999999999999999 99999999999972 888889998 5666555556
Q ss_pred eEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHH
Q psy9976 182 ARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTE 261 (349)
Q Consensus 182 ~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e 261 (349)
++++++| +++++++++|+++.+|. . +.+.+... . +
T Consensus 152 ~~~l~~~--~~~~~vl~~p~~~~sT~-~-----------~~~~~~~~-------------------~------------~ 186 (271)
T 2v8p_A 152 LEPVETE--ISGKITLVIPQVSSSTG-R-----------VYSSLREE-------------------H------------F 186 (271)
T ss_dssp EEECCCC--CCSEEEEEECSSCCCHH-H-----------HHHTCCTT-------------------S------------C
T ss_pred EEEccCC--CCcEEEEEeCCCCCCHH-H-----------HHHhcccc-------------------c------------C
Confidence 6776632 27899999999876653 1 11111100 0 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEE-ecccCccceeEEEeCCC-chh
Q psy9976 262 IDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR-MTGGGFGGCAIALVSPL-NLR 339 (349)
Q Consensus 262 ~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gak-ltGaG~GG~~i~l~~~~-~~~ 339 (349)
.|+..+ .+|.++|++.++++|+. .++..-...+|+++.+++.+++ .|+ ++ |||+| +|+++|++++ .++
T Consensus 187 -~~~~~~-~al~~~d~~~~~~~~~n---~l~~~~~~~~p~l~~~~~~~~~-~Ga--a~~mSGsG--~~v~~l~~~~~~a~ 256 (271)
T 2v8p_A 187 -VTPEYA-EEKIQRIISGEVEEIEN---VLGDIARELYPEINEVYRFVEY-LGF--KPFVSGSG--STVYFFGGASEELK 256 (271)
T ss_dssp -CCHHHH-HHHHHHHHTTCGGGCCB---HHHHHHHHHCHHHHHHHHHHHH-TTC--CCEECTTS--SCEEESSCCCHHHH
T ss_pred -cchhHH-HHhhcCCHHHHHHHHhC---ChhhHhHHhChHHHHHHHHHHh-CCC--ccCccccC--cCeEEEeCCHHHHH
Confidence 123344 77888888888887731 1222112368999999999999 597 99 99998 8999999875 344
Q ss_pred hh
Q psy9976 340 RG 341 (349)
Q Consensus 340 ~~ 341 (349)
++
T Consensus 257 ~~ 258 (271)
T 2v8p_A 257 KA 258 (271)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=193.79 Aligned_cols=228 Identities=14% Similarity=0.125 Sum_probs=157.9
Q ss_pred EEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCCCceEEE
Q psy9976 22 WIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAV 101 (349)
Q Consensus 22 ~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~ 101 (349)
.++++ +||+++++.+++ + .+++.+.. .++ ..|++..+++.+.+......|++|.
T Consensus 27 ~sl~~-ai~l~~~v~~~~--~-~~~i~~~~-----------~~~-----------~~n~v~~a~~~~~~~~g~~~g~~i~ 80 (275)
T 1uek_A 27 HTLFA-PFSLADRLVVEP--V-SSGLHFQG-----------PYG-----------RENLAYRAASLYLEAAGQPGGVRIL 80 (275)
T ss_dssp EEEEE-EEEEEEEEEEEE--E-SSCEEEES-----------TTG-----------GGSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEE-EcCCCCEEEEEE--C-cEEEEEcC-----------CCC-----------CccHHHHHHHHHHHHhCCCCCEEEE
Confidence 38889 999999999877 2 33333321 010 1378988888776543334699999
Q ss_pred EEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCe
Q psy9976 102 ILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHE 181 (349)
Q Consensus 102 i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~ 181 (349)
+.++||+++|||||||+++|++.|++++++.++ +++++|.++|. |++++++|| +.+....+..
T Consensus 81 i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l----~l~~la~~~g~----------dv~~~~~Gg---~~~~~g~g~~ 143 (275)
T 1uek_A 81 LEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV----DLFALARTLGA----------DVPFFLLGR---GAEARGVGER 143 (275)
T ss_dssp EECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC----CHHHHHHHHCT----------THHHHHHCS---EEEEETTTTE
T ss_pred EecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh----HHHHHHHHhCC----------ChHHHhcCC---eEEEEccCce
Confidence 999999999999999999999999999999876 78888888752 999999998 5666655556
Q ss_pred eEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHH
Q psy9976 182 ARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTE 261 (349)
Q Consensus 182 ~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e 261 (349)
+++++ + |++++++++|+.+.+|. ++.+.+..+..+. ..
T Consensus 144 ~~~l~-~--~~~~~vl~~p~~~~sT~------------~~~~~~~~~~~~~--------------~~------------- 181 (275)
T 1uek_A 144 LKPLA-L--PPVPAVVFFPGLRVPTP------------LVYRAVRPEDFGP--------------DL------------- 181 (275)
T ss_dssp EEEEC-C--CCEEEEEEECCCCCCHH------------HHHHTCCGGGCCC--------------CC-------------
T ss_pred eEEcc-C--CCcEEEEEeCCCCCchH------------HHHHhCchhhccc--------------CC-------------
Confidence 77776 3 58999999999877753 1222222110000 00
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCC-chhh
Q psy9976 262 IDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPL-NLRR 340 (349)
Q Consensus 262 ~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~-~~~~ 340 (349)
++..+..+|.++ ++. +.||. ++.....++|+++.+++.+++ .|++|++|||+| +|+++|++++ .+++
T Consensus 182 --~~~~~~~al~~~-~~~--~~~n~----l~~~~~~~~p~l~~l~~~~~~-~Ga~ga~~SGsG--~~v~~l~~~~~~~~~ 249 (275)
T 1uek_A 182 --PVEAILEALARG-EEP--PYWNS----LEGPAFRLFPELKEVRGRMRA-LGLRGVLMSGSG--SAFFGLAEGPDHARR 249 (275)
T ss_dssp --CHHHHHHHHHHT-CCC--SCCBT----THHHHHHHCTHHHHHHHHHHH-TTCEEEEECTTS--SCEEEECSSHHHHHH
T ss_pred --ChHHHHHHHHhc-ccc--ccccc----hHHHHHHhChHHHHHHHHHHh-CCCCEEEEeccc--cCeEEEeCCHHHHHH
Confidence 022344555544 322 22322 111111257999999999999 699999999998 7999999875 5666
Q ss_pred hhhhcc
Q psy9976 341 GRKKKS 346 (349)
Q Consensus 341 ~~~~~~ 346 (349)
+.+.++
T Consensus 250 ~~~~l~ 255 (275)
T 1uek_A 250 AAEALR 255 (275)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 666543
|
| >2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=196.72 Aligned_cols=236 Identities=14% Similarity=0.117 Sum_probs=162.0
Q ss_pred hhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHh
Q psy9976 11 LKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFND 90 (349)
Q Consensus 11 ~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~ 90 (349)
.||+.=-+|.+.++++ +||+++++.+++++++.+++.+... .++ ...|++..+++.+.+
T Consensus 18 ~g~~~dGyh~l~sl~~-ai~l~~~v~v~~~~~~~i~i~~~~~----------~~~----------~~~nlv~~a~~~~~~ 76 (283)
T 2ww4_A 18 TGQRADGYHTLQTLFQ-FLDYGDTISIELRDDGDIRLLTPVE----------GVE----------HEDNLIVRAARLLMK 76 (283)
T ss_dssp EEECTTSCEEEEEEEE-EEEEEEEEEEEEESSSCEEECSCBT----------TBC----------GGGSHHHHHHHHHHH
T ss_pred cCCCCCCCcceEEEEE-ECCCCcEEEEEECCCCcEEEEeCCC----------CCC----------CcccHHHHHHHHHHH
Confidence 4554211344458889 9999999999988777777654310 011 014799888887755
Q ss_pred c-------CCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHH
Q psy9976 91 R-------VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYV 163 (349)
Q Consensus 91 ~-------~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a 163 (349)
. +. .+|++|.+.++||+|+|||||||+++|++.|++++++.++ ++++++++|.++|. |.++
T Consensus 77 ~~~~~~~~g~-~~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l-~~~~l~~la~~~e~----------dv~~ 144 (283)
T 2ww4_A 77 TAADSGRLPT-GSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGL-SMDELAEMGLTLGA----------DVPV 144 (283)
T ss_dssp HHHHTTCSCT-TCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHTTCT----------THHH
T ss_pred HhhhhcccCC-CCceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHhCC----------CHHH
Confidence 3 43 5799999999999999999999999999999999999999 99999999998863 9999
Q ss_pred HHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHh
Q psy9976 164 SVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHA 243 (349)
Q Consensus 164 ~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~ 243 (349)
+++|| ..+....+..++++++ |++.+++++|+++.+|. . .++.... +.+
T Consensus 145 ~~~gg---~~~~~g~g~~~~~l~~---~~~~~vl~~p~~~~sT~-~--------------~~~~~~~---~~~------- 193 (283)
T 2ww4_A 145 FVRGH---AAFAEGVGEILTPVDP---PEKWYLVAHPGVSIPTP-V--------------IFKDPEL---PRN------- 193 (283)
T ss_dssp HHHTB---CEEEETTTTEEEECCC---CCCEEEEECCSCCCCHH-H--------------HHTCTTS---CCC-------
T ss_pred hhcCC---eEEEEecCccceEcCC---CCcEEEEEeCCCCCchH-H--------------HHhcccc---ccc-------
Confidence 99998 4555555556666654 47889999999987753 1 1111000 000
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEeccc
Q psy9976 244 QKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGG 323 (349)
Q Consensus 244 ~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGa 323 (349)
+... . . .+|.++++ +|..+. . ....+|+++.+++.+++ .| +++|||+
T Consensus 194 -~~~~---------~------l----~~l~~~~~------~nd~~~-~---~~~~~p~l~~i~~~~~~-~G--~a~~SGs 240 (283)
T 2ww4_A 194 -TPKR---------S------I----ETLLKCEF------SNDCEV-I---ARKRFREVDAVLSWLLE-YA--PSRLTGT 240 (283)
T ss_dssp -CCCC---------C------H----HHHHTSCC------CBTTHH-H---HHHHCHHHHHHHHHHHT-TS--CEEECTT
T ss_pred -chHH---------H------H----HHHHhhhh------cCchHH-H---HHhcChHHHHHHHHHHH-cC--CceECCc
Confidence 0000 0 0 01222221 111111 1 12358999999999999 58 8999999
Q ss_pred CccceeEEEeCCCc-hhhhhhhc
Q psy9976 324 GFGGCAIALVSPLN-LRRGRKKK 345 (349)
Q Consensus 324 G~GG~~i~l~~~~~-~~~~~~~~ 345 (349)
| +|+++|++++. ++++.+.+
T Consensus 241 G--~tvf~l~~~~~~a~~~~~~l 261 (283)
T 2ww4_A 241 G--ACVFAEFDTESEARQVLEQA 261 (283)
T ss_dssp S--SCEEEEESSHHHHHHHHHHC
T ss_pred c--cceEEEeCCHHHHHHHHHHh
Confidence 7 99999998753 66666654
|
| >1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=184.20 Aligned_cols=219 Identities=17% Similarity=0.090 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHHhcCCC------------CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q psy9976 78 ANYVKGVVSIFNDRVAP------------VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQ 145 (349)
Q Consensus 78 ~~~v~~~~~~l~~~~~~------------~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~ 145 (349)
.|+++.++..+.+.... ..|++|.+.++||.++|||||||.++|++.|++++++.++ ++++|+++|.
T Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~L-s~~eLa~lA~ 170 (416)
T 1fi4_A 92 NERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQ-STSEISRIAR 170 (416)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCS-CHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHh
Confidence 36777887776553211 4689999999999999999999999999999999999999 9999999998
Q ss_pred HHHHhhcCCCChhhHHHHHHhccCCeEEEEecC------CCeeEEeeCC-CCCCeE--EEEEeCCCCcccChhhHHHHHH
Q psy9976 146 EAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCK------THEARHIPLG-DDHQYV--FLIINSNVHHELSSSEYAVRRA 216 (349)
Q Consensus 146 ~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~------~~~~~~l~~~-~~~~~~--~ll~~s~~~~~~~~~~y~~r~~ 216 (349)
+.+ | +...++||| ++..+.. .....+++.+ ..|+++ +++.+++.+...++..|+.++.
T Consensus 171 ~g~--------G--s~~~sl~GG---~v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~~~ 237 (416)
T 1fi4_A 171 KGS--------G--SACRSLFGG---YVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVA 237 (416)
T ss_dssp HHH--------G--GGGGGGSSS---EEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHHHH
T ss_pred ccC--------C--chheEeeCC---cEEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHHhh
Confidence 764 2 556789999 5554422 1223555432 114676 4445554444333444433221
Q ss_pred HHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccc-
Q psy9976 217 QCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDY- 295 (349)
Q Consensus 217 ~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~- 295 (349)
. .+....++.++ ...|+..++.||.++|++.||++|.++|..++..+
T Consensus 238 ~------------------------------~~~~~~~~~~i--~~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~ 285 (416)
T 1fi4_A 238 T------------------------------SELFKERIEHV--VPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCL 285 (416)
T ss_dssp H------------------------------CSHHHHHHHTH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred c------------------------------CHhHHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 0 00011112221 12468899999999999999999988877776532
Q ss_pred ------CCCChhHHHHHHHHHcC---CC-CeEEEecccCccceeEEEeCCCchhhhhhh
Q psy9976 296 ------EVSCKELDDIAHCAQSL---PG-VLGCRMTGGGFGGCAIALVSPLNLRRGRKK 344 (349)
Q Consensus 296 ------~vs~p~ld~l~~~a~~~---~G-a~gakltGaG~GG~~i~l~~~~~~~~~~~~ 344 (349)
....|....+++.+.+. .| +.++-++|+| +++++|++++.++++.+.
T Consensus 286 ~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~al~~~~~~~~v~~~ 342 (416)
T 1fi4_A 286 DSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAVLYYLAENESKLFAF 342 (416)
T ss_dssp TSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEEEEEEGGGHHHHHHH
T ss_pred ccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEEEEECHHHHHHHHHH
Confidence 23556777777665442 27 6788899887 999999987766665543
|
| >2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-18 Score=162.76 Aligned_cols=249 Identities=13% Similarity=0.107 Sum_probs=158.7
Q ss_pred EEeccccc---ceEEEEEEecCC-CeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCC---C
Q psy9976 23 IIMMDVRQ---VVTVLLGSRNNS-NQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAP---V 95 (349)
Q Consensus 23 vl~~~Ai~---~~~~v~~~~~~d-~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~---~ 95 (349)
.|.+ |+| .++.++++..++ ...++..... ..+. .-.+.+..++..+.+.... .
T Consensus 36 slgl-aL~~~~l~~~~~v~~~~~~~~~~i~i~g~--------~~~~-----------~~~~~v~~~~~~~~~~~~~~~~~ 95 (380)
T 2hke_A 36 SFSI-TLSASPFRSKTSVELRDDIETDTLRLNGT--------EVDV-----------GKTPRVQSMLLHLRSTCPEELKN 95 (380)
T ss_dssp EEEE-EBCSSSCCEEEEEEEESSCSSCEEEETTE--------EECG-----------GGCHHHHHHHHHHHTSSCHHHHT
T ss_pred ceEE-EecCCCCceEEEEEECCCCCccEEEECCc--------ccCc-----------hhHHHHHHHHHHHHHHhcccCCC
Confidence 6778 999 788888876432 1233332210 0010 0136888888888765332 5
Q ss_pred CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEE
Q psy9976 96 PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLI 175 (349)
Q Consensus 96 ~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~ 175 (349)
.|++|.+.++||.++|||||||..+|++.|++++++.+ +++++++.+.+ | |...|+||| ++..
T Consensus 96 ~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~----~eL~~lA~~g~--------G--sva~s~~GG---~v~~ 158 (380)
T 2hke_A 96 KKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST----TNVSMLARLGS--------G--SACRSAFGG---FVIW 158 (380)
T ss_dssp CEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS----SCHHHHHHHHC--------G--GGGGGGSSS---EEEE
T ss_pred CCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH----HHHHHHHhhcC--------c--ceeeehhCC---eEEE
Confidence 68999999999999999999999999999999999865 67788887553 2 567799999 5544
Q ss_pred ecC------CCeeEEeeCCC-CCCeEEEEE--eCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 176 DCK------THEARHIPLGD-DHQYVFLII--NSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 176 d~~------~~~~~~l~~~~-~~~~~~ll~--~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
... .....+++.+. .|+++++++ +++.....++..+ .+.+...
T Consensus 159 ~~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~sst~~~----------r~~~~~~------------------ 210 (380)
T 2hke_A 159 NKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGM----------QQSLKTS------------------ 210 (380)
T ss_dssp ECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHHHHH----------HHHHHHC------------------
T ss_pred ecCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCCCCHHHH----------HHHHhcC------------------
Confidence 422 12345665431 156764444 3332222122211 1111100
Q ss_pred CCHHHHHHHHHHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc-------ccCCCChhHHHHHHHHHcC--C-C
Q psy9976 247 LSDEEYKRGHHVVT--EIDRTYKGANALKEGDFETFGKLMNESHDSLRD-------DYEVSCKELDDIAHCAQSL--P-G 314 (349)
Q Consensus 247 l~~~~~~r~~~~i~--e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~-------~~~vs~p~ld~l~~~a~~~--~-G 314 (349)
+ .++ +.+. ...++..++.||.++|++.||++|.+++..+.. ......|....+++.+.+. . |
T Consensus 211 -~--~~~---~~~~~~~~~~~~~l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~G 284 (380)
T 2hke_A 211 -P--LMK---KRISETVPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKG 284 (380)
T ss_dssp -T--THH---HHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred -h--hHH---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcC
Confidence 0 001 1222 234588899999999999999999765554442 1344778878887776541 3 8
Q ss_pred -CeEEEecccCccceeEEEeCCCchhhhhhh
Q psy9976 315 -VLGCRMTGGGFGGCAIALVSPLNLRRGRKK 344 (349)
Q Consensus 315 -a~gakltGaG~GG~~i~l~~~~~~~~~~~~ 344 (349)
+.++.++||| +++++|++++.++++.+.
T Consensus 285 a~~~a~~SGaG--Ptv~~l~~~~~~~~v~~~ 313 (380)
T 2hke_A 285 RTALAYTFDAG--ANCFLFVLKEDLPEAVAM 313 (380)
T ss_dssp SCCEEEECCSS--SCEEEEEEGGGHHHHHHH
T ss_pred CcceEEEECCC--CcEEEEECHHHHHHHHHH
Confidence 7789999876 999999987666665543
|
| >3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-16 Score=146.69 Aligned_cols=208 Identities=15% Similarity=0.081 Sum_probs=136.4
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHH----HHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCC
Q psy9976 80 YVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATY----TFLESITDEKTLKLTDKALACQEAEHSFAGVP 155 (349)
Q Consensus 80 ~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~----~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~ 155 (349)
.++.+++.++ ...|++|.+.++||.++|||||||..||++ .|+++++++++.+++++.++|...+
T Consensus 79 ~i~~~l~~~~----~~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gs------- 147 (323)
T 3lto_A 79 HLVRLKEYFG----YVGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGS------- 147 (323)
T ss_dssp HHHHHHHHHT----CCCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTC-------
T ss_pred HHHHHHHHhC----CCCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-------
Confidence 4444444443 345899999999999999999999999999 9999999988537889999986442
Q ss_pred ChhhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEe-CCC--CcccChhhHHHHHHHHHHHHHHhchhccCC
Q psy9976 156 CGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN-SNV--HHELSSSEYAVRRAQCKSVLDKLHRVSFRD 232 (349)
Q Consensus 156 ~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~-s~~--~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~ 232 (349)
| +...|+||| ++..... ..+++..+. |++.++++. +.. +.+|+ .+.+.+....
T Consensus 148 -G--saa~si~GG---~v~~~~g--~~~~l~~~~-~~l~~~v~vi~~~~~~vsT~------------~~~~~l~~~~--- 203 (323)
T 3lto_A 148 -G--SSCRSFYAP---WALWTGD--KVSAIDLPY-KDLLHQVIVISSQEKEIPSR------------VAHKLVKTSP--- 203 (323)
T ss_dssp -G--GGGGGGSCS---EEEEETT--EEEECCCSC-CSCEEEEEECCCCTTCCCHH------------HHHHHGGGST---
T ss_pred -C--CcchhhhCC---EEEEecC--cEEEccCCC-CCCeEEEEEECCCCCCCCCH------------HHHhhcccCh---
Confidence 3 456699999 5544322 334443122 466654433 222 22332 1122222100
Q ss_pred CCHHHHHHHHhcccCCHHHHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc-------ccCCCChhHHH
Q psy9976 233 VSLKSLEDKHAQKLLSDEEYKRGHHVVT-EIDRTYKGANALKEGDFETFGKLMNESHDSLRD-------DYEVSCKELDD 304 (349)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~~r~~~~i~-e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~-------~~~vs~p~ld~ 304 (349)
+- ...+. ...++..++.||.++|++.|+++|..++..|.. .+....|+...
T Consensus 204 --------------~~-------~~~~~~~~~~~~~l~~AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~ 262 (323)
T 3lto_A 204 --------------FY-------ETRSERAEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLH 262 (323)
T ss_dssp --------------TT-------TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHH
T ss_pred --------------hH-------HHHHHHhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHH
Confidence 00 01111 223588999999999999999987655544443 12346777777
Q ss_pred HHHHHHcC---CCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 305 IAHCAQSL---PGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 305 l~~~a~~~---~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
+++.+.++ .|++++.++||| +.+++|++++..+++.+.+
T Consensus 263 i~~~v~~~r~~~G~~~~~tsgAG--Pnv~~l~~~~~~~~v~~~l 304 (323)
T 3lto_A 263 ILSVIEKFWNEKGDGPVVTMDAG--PNVHLLYRSDQTDLARQFK 304 (323)
T ss_dssp HHHHHHHHHHHHSCCCEEECCSS--SCEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEECCC--CCeEEEEecccHHHHHHHH
Confidence 76666442 489999999998 8889999988877766543
|
| >3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-15 Score=143.26 Aligned_cols=199 Identities=16% Similarity=0.108 Sum_probs=132.8
Q ss_pred CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEE
Q psy9976 96 PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLI 175 (349)
Q Consensus 96 ~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~ 175 (349)
.|++|.+.++||.++|||||||..+|++.|++++++++ +++.++|...+ | +...|+||| ++..
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l~----~el~~lA~~~s--------G--s~~~s~~GG---~v~w 184 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVE----GDLSEVARRGS--------G--SACRSLYGG---FVEW 184 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTCC----SCCHHHHHHHC--------G--GGGGGGSSS---EEEE
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCCh----HHHHHHHHHhC--------C--CcchHhhCC---EEEE
Confidence 48999999999999999999999999999999999973 36667776552 3 456699999 5655
Q ss_pred ecC------CCeeEEeeCCCC-CCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCC
Q psy9976 176 DCK------THEARHIPLGDD-HQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLS 248 (349)
Q Consensus 176 d~~------~~~~~~l~~~~~-~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~ 248 (349)
... .....+++.+.. |+++++++.......+..+.- . +.+.+.. +
T Consensus 185 ~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~-----~---mr~~l~t--------------------s 236 (414)
T 3f0n_A 185 QMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTV-----G---MQTSVET--------------------S 236 (414)
T ss_dssp CCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHH-----H---HHHHHHH--------------------C
T ss_pred EeccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCchH-----H---HHhhccc--------------------C
Confidence 321 112355543211 578877666443333222110 0 0011110 1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHH----HHhhhc---ccCCCChhHHHHHHHHHcCC----CC
Q psy9976 249 DEEYKRGHHVVTE--IDRTYKGANALKEGDFETFGKLMNES----HDSLRD---DYEVSCKELDDIAHCAQSLP----GV 315 (349)
Q Consensus 249 ~~~~~r~~~~i~e--~~rv~~~~~al~~~d~~~lg~lm~~s----~~~lr~---~~~vs~p~ld~l~~~a~~~~----Ga 315 (349)
. ...+.+.. ..|+..++.||.++|++.||+++..+ |..+++ .+...+|+...+++.+.++. |+
T Consensus 237 ~----~~~~~v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~ 312 (414)
T 3f0n_A 237 T----LLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQT 312 (414)
T ss_dssp H----HHHHHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSC
T ss_pred c----cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCc
Confidence 1 12233333 35689999999999999999987644 333333 23446888888888877642 78
Q ss_pred eEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 316 LGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 316 ~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
.++.++||| +.+++|++++..+++.+.+
T Consensus 313 ~~~~tsdAG--Pnv~vl~~~~~~~~v~~~l 340 (414)
T 3f0n_A 313 KVAYTFDAG--PNAVIFTLEDTVAEFVAAV 340 (414)
T ss_dssp CEEEECCSS--SCEEEEEEHHHHHHHHHHH
T ss_pred eEEEEECCC--CCEEEEEecccHHHHHHHH
Confidence 999999998 8899999888877776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 349 | ||||
| d1wuua2 | 176 | d.58.26.7 (A:217-392) Galactokinase {Human (Homo s | 5e-44 | |
| d1piea2 | 183 | d.58.26.7 (A:214-396) Galactokinase {Lactococcus l | 7e-44 | |
| d1s4ea2 | 171 | d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyro | 3e-38 | |
| d1wuua1 | 215 | d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapi | 1e-31 | |
| d1piea1 | 205 | d.14.1.5 (A:9-213) Galactokinase {Lactococcus lact | 1e-26 | |
| d1s4ea1 | 176 | d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococ | 2e-23 | |
| d1kvka2 | 169 | d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Ratt | 3e-19 | |
| d1kkha2 | 137 | d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon | 7e-15 | |
| d1kvka1 | 225 | d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus | 1e-13 | |
| d1kkha1 | 180 | d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Met | 2e-11 | |
| d1k47a2 | 135 | d.58.26.4 (A:195-329) Phosphomevalonate kinase (PM | 7e-10 | |
| d1h72c1 | 163 | d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Met | 2e-04 |
| >d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Galactokinase domain: Galactokinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 147 bits (372), Expect = 5e-44
Identities = 78/142 (54%), Positives = 97/142 (68%), Gaps = 2/142 (1%)
Query: 192 QYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEE 251
+ LI NSNV H L+SSEY VRR QC+ V L + S R+V L+ LE A+ L+S E
Sbjct: 1 KLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEA--ARDLVSKEG 58
Query: 252 YKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQS 311
++R HVV EI RT + A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A +
Sbjct: 59 FRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALA 118
Query: 312 LPGVLGCRMTGGGFGGCAIALV 333
+PGV G RMTGGGFGGC + L+
Sbjct: 119 VPGVYGSRMTGGGFGGCTVTLL 140
|
| >d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Galactokinase domain: Galactokinase species: Lactococcus lactis [TaxId: 1358]
Score = 147 bits (372), Expect = 7e-44
Identities = 59/145 (40%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
Query: 193 YVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRV----SFRDVSLKSLEDKHAQKLLS 248
Y +I+N+N L+ S+Y R A+ + L ++ S ++S + D + +
Sbjct: 2 YDIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEF-DANTDLIGD 60
Query: 249 DEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHC 308
+ KR H V E +RT A G+ FG+L+N SH SL+DDYEV+ ELD +A
Sbjct: 61 ETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAET 120
Query: 309 AQSLPGVLGCRMTGGGFGGCAIALV 333
AQ GVLG RMTG GFGGCAIALV
Sbjct: 121 AQKQAGVLGARMTGAGFGGCAIALV 145
|
| >d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Galactokinase domain: Galactokinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 132 bits (333), Expect = 3e-38
Identities = 54/141 (38%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 193 YVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEY 252
L+ + V EL+SSEYA R+ + L L + S ++V+ K L L
Sbjct: 2 VSVLVFYTGVKRELASSEYAERKRIAEESLRILGKESSKEVTEKDLGK------LPPLHR 55
Query: 253 KRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSL 312
K ++V E R + +ALKEGD E GK++ +H L ++Y VSC+ELD A
Sbjct: 56 KFFSYIVRENARVLEVRDALKEGDIEKVGKILTTAHWDLAENYRVSCEELDFFVKKAME- 114
Query: 313 PGVLGCRMTGGGFGGCAIALV 333
G G R+TG GFGG AIALV
Sbjct: 115 LGAYGARLTGAGFGGSAIALV 135
|
| >d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 215 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Galactokinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 116 bits (291), Expect = 1e-31
Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 4/158 (2%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWANYVKGVVSIFNDR 91
TVL+GS + L + S AD+P + F +P Q+ L PG P+WANYVKGV+ +
Sbjct: 60 TVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYY--P 117
Query: 92 VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSF 151
AP+PGF+AV++SSVP+G GLSSSA+LEVATYTFL+ + + + +A CQ+AEHSF
Sbjct: 118 AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCP-DSGTIAARAQVCQQAEHSF 176
Query: 152 AGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGD 189
AG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D
Sbjct: 177 AGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSD 214
|
| >d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Galactokinase species: Lactococcus lactis [TaxId: 1358]
Score = 102 bits (255), Expect = 1e-26
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Query: 30 QVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFN 89
+ T L ++ L+S++ K I FD+ +V+K W+NYVKG++ +
Sbjct: 49 TIGTTGLARLREDKKVKLYSENF--PKLGVIEFDLDEVEK--KDGELWSNYVKGMIVMLK 104
Query: 90 DR-VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAE 148
GF +I +P SGLSSSA+LE+ L+ + + + Q+ E
Sbjct: 105 GAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNV-PRLELVQLGQKTE 163
Query: 149 HSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPL 187
+ + GV GI+DQ+ GE A+ +DC T + +P+
Sbjct: 164 NDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPV 202
|
| >d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Galactokinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 93.4 bits (231), Expect = 2e-23
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 74 APKWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEK 133
W +YVKGV+ + + G I +P+G+GLSSSA+ EV L + +
Sbjct: 62 EGSWIDYVKGVLWVLIQEGYKIGGLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLN 121
Query: 134 TLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPL 187
+ KAL ++AE+ F GVPCGI+DQ+ V G++ + + +D +T + +IP
Sbjct: 122 -IDPLKKALLAKKAENEFVGVPCGILDQFAVVFGKKDNVIFLDTQTLQYEYIPF 174
|
| >d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Mevalonate kinase domain: Mevalonate kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.6 bits (201), Expect = 3e-19
Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 28/142 (19%)
Query: 195 FLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKR 254
L+ N+ V + VR K + +
Sbjct: 7 ILLTNTKVPRSTKALVAGVRS----------------------RLIKFPEIM--APLLTS 42
Query: 255 GHHVVTEIDR-TYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLP 313
+ E +R + A A + +LM+ + L V LD + +
Sbjct: 43 IDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLN-ALGVGHASLDQLCQVTAA-- 99
Query: 314 GVLGCRMTGGGFGGCAIALVSP 335
L ++TG G GGC I L+ P
Sbjct: 100 HGLHSKLTGAGGGGCGITLLKP 121
|
| >d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Mevalonate kinase domain: Mevalonate kinase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 68.5 bits (167), Expect = 7e-15
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 251 EYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQ 310
+ + + EID+ ALK + E FGKLM ++H+ L+ +S +LD I
Sbjct: 34 KIENKDEIFKEIDKVID--EALKIKNKEDFGKLMTKNHELLK-KLNISTPKLDRIVDIGN 90
Query: 311 SLPGVLGCRMTGGGFGGCAIALVSP 335
G ++TG G GGC I LV+
Sbjct: 91 R--FGFGAKLTGAGGGGCVIILVNE 113
|
| >d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Mevalonate kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 67.6 bits (164), Expect = 1e-13
Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 15/127 (11%)
Query: 55 DKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSS 114
++ + + + + +P + ++ S +P G+GL S
Sbjct: 86 EQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGS 145
Query: 115 SAALEVATYTFLESITDEKTLKLTDK--------------ALACQEAEHSFAGVPCGIMD 160
SAA V L + +E T L D+ E E G P G +D
Sbjct: 146 SAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSG-VD 204
Query: 161 QYVSVMG 167
VS G
Sbjct: 205 NSVSTWG 211
|
| >d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Mevalonate kinase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 60.3 bits (145), Expect = 2e-11
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 8/137 (5%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDR- 91
+ + ++I L+ + D + ++ +++ + P Y + D
Sbjct: 37 STIEIKETQEDEIILNLN----DLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYL 92
Query: 92 -VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHS 150
+ P GF I S +P+ GL SSA++ + T + + K LK + A E
Sbjct: 93 NIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYN-KELKDDEIAKLGYMVEKE 151
Query: 151 FAGVPCGIMDQYVSVMG 167
G I D
Sbjct: 152 IQG-KASITDTSTITYK 167
|
| >d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Phosphomevalonate kinase (PMK) domain: Phosphomevalonate kinase (PMK) species: Streptococcus pneumoniae r6 [TaxId: 171101]
Score = 54.3 bits (130), Expect = 7e-10
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 245 KLLSDEEYKRGHHVVTEIDR-TYKGANALKEGDFETFGKLMNESHDSLRD-DYEVSCKEL 302
++ + + +T AL++G E + + + L ++ L
Sbjct: 21 HMVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLL 80
Query: 303 DDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP 335
+ +Q + +G G G C IAL
Sbjct: 81 RQLKEASQD--LQAVAKSSGAGGGDCGIALSFD 111
|
| >d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Homoserine kinase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 38.9 bits (90), Expect = 2e-04
Identities = 32/144 (22%), Positives = 44/144 (30%), Gaps = 7/144 (4%)
Query: 45 IHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILS 104
+ D + D I K P P N V D G I
Sbjct: 25 LKEPYDVIEVEAIDDKEIIIEVDDKNIPTDPDK-NVAGIVAKKMIDDFNIGKGVKITIKK 83
Query: 105 SVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQY-V 163
V GSGL SSAA T + + L L L + A D
Sbjct: 84 GVKAGSGLGSSAASSAGTAYAINELFK---LNLDKLKLVDYASYGELASSGAKHADNVAP 140
Query: 164 SVMGEEGSALLIDCKTHEARHIPL 187
++ G G ++ + + E HIP+
Sbjct: 141 AIFG--GFTMVTNYEPLEVLHIPI 162
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| d1wuua2 | 176 | Galactokinase {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1s4ea2 | 171 | Galactokinase {Archaeon Pyrococcus furiosus [TaxId | 100.0 | |
| d1piea2 | 183 | Galactokinase {Lactococcus lactis [TaxId: 1358]} | 100.0 | |
| d1wuua1 | 215 | Galactokinase {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1piea1 | 205 | Galactokinase {Lactococcus lactis [TaxId: 1358]} | 100.0 | |
| d1s4ea1 | 176 | Galactokinase {Archaeon Pyrococcus furiosus [TaxId | 100.0 | |
| d1kkha1 | 180 | Mevalonate kinase {Archaeon Methanococcus jannasch | 99.95 | |
| d1kvka1 | 225 | Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: | 99.92 | |
| d1k47a1 | 194 | Phosphomevalonate kinase (PMK) {Streptococcus pneu | 99.9 | |
| d1h72c1 | 163 | Homoserine kinase {Archaeon Methanococcus jannasch | 99.8 | |
| d1kvka2 | 169 | Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: | 99.8 | |
| d1kkha2 | 137 | Mevalonate kinase {Archaeon Methanococcus jannasch | 99.74 | |
| d1k47a2 | 135 | Phosphomevalonate kinase (PMK) {Streptococcus pneu | 99.73 | |
| d1ueka1 | 148 | 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k | 99.33 | |
| d1oj4a1 | 163 | 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k | 99.29 | |
| d1h72c2 | 133 | Homoserine kinase {Archaeon Methanococcus jannasch | 98.68 | |
| d1ueka2 | 120 | 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k | 97.57 | |
| d1fi4a1 | 188 | Mevalonate 5-diphosphate decarboxylase {Baker's ye | 97.54 | |
| d1oj4a2 | 120 | 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k | 94.5 | |
| d1fi4a2 | 203 | Mevalonate 5-diphosphate decarboxylase {Baker's ye | 91.94 |
| >d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Galactokinase domain: Galactokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-37 Score=263.56 Aligned_cols=152 Identities=51% Similarity=0.853 Sum_probs=142.5
Q ss_pred CeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9976 192 QYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANA 271 (349)
Q Consensus 192 ~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~a 271 (349)
++.++|+||+++|++.+++||.|+.||++|++.|+++++++++.+++..+ ++.+++..++|+.|+++|+.||.++++|
T Consensus 1 ~l~lvl~ds~v~r~l~~~~Yn~R~~ec~~aa~~lg~~~l~~~~~~~l~~~--~~~l~~~~~~Ra~Hv~~E~~Rv~~~~~a 78 (176)
T d1wuua2 1 KLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAA--RDLVSKEGFRRARHVVGEIRRTAQAAAA 78 (176)
T ss_dssp SEEEEEEEEEEEC--CTTTHHHHHHHHHHHHHHTTCSSTTSCCHHHHTTG--GGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCcCcCccchHHHHHHHHHHHHHhCccchhhccHHHHHHH--HhhhccHHHHHHHHHHHHHHhhHHHHHH
Confidence 36799999999999999999999999999999999999999999999887 7789999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 272 LKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 272 l~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
|+++|++.||++|++||.+|+++|++|||++|.|++.|++..|++||||||||||||+++|++++.++++.+.+
T Consensus 79 l~~~d~~~lg~Lm~~sh~sL~~~~~vS~peld~lv~~a~~~~G~lGaRltGaGfGGcviaLv~~~~~~~~~~~~ 152 (176)
T d1wuua2 79 LRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHI 152 (176)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHhcCCCceeeeccCCCCcEEEEEechhhHHHHHHHH
Confidence 99999999999999999999999999999999999999996699999999999999999999999988877654
|
| >d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Galactokinase domain: Galactokinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.8e-37 Score=260.66 Aligned_cols=147 Identities=37% Similarity=0.495 Sum_probs=139.7
Q ss_pred CeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9976 192 QYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANA 271 (349)
Q Consensus 192 ~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~a 271 (349)
++.|+|++||++|++++++||.||.||++|+++|+++++++++.+++.. +++..++|+.|+++|++||.++++|
T Consensus 1 d~~~vv~dsg~~h~L~~s~Yn~R~~ec~~a~~~lg~~~l~~~~~~~l~~------l~~~~~~Ra~Hvv~En~Rv~~~~~a 74 (171)
T d1s4ea2 1 DVSVLVFYTGVKRELASSEYAERKRIAEESLRILGKESSKEVTEKDLGK------LPPLHRKFFSYIVRENARVLEVRDA 74 (171)
T ss_dssp TEEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTCSCGGGCCHHHHHT------SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCcCCCcchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhh------cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999988754 5888999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 272 LKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 272 l~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
|+++|++.||++|++||.+++++|++|||++|.|++.+++ .|++||||||+|||||+++|++++.+++|++++
T Consensus 75 l~~~d~~~~G~lm~~sh~sl~~~~evS~~eld~lv~~a~~-~Ga~GaRmtGgGfGG~viaLv~~~~~~~~~~~i 147 (171)
T d1s4ea2 75 LKEGDIEKVGKILTTAHWDLAENYRVSCEELDFFVKKAME-LGAYGARLTGAGFGGSAIALVDKDKAKTIGDAI 147 (171)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-TTCSEEEECSSCSEEEEEEEEEGGGHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhh-cccCceeeecCCCCcEEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 699999999999999999999999999988654
|
| >d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Galactokinase domain: Galactokinase species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.7e-36 Score=259.69 Aligned_cols=152 Identities=41% Similarity=0.635 Sum_probs=140.7
Q ss_pred CeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHh----chhccCCCCHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHH
Q psy9976 192 QYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKL----HRVSFRDVSLKSLEDKHAQKLL-SDEEYKRGHHVVTEIDRTY 266 (349)
Q Consensus 192 ~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l----~~~~l~~~~~~~~~~~~~~~~l-~~~~~~r~~~~i~e~~rv~ 266 (349)
++.|+|+||+++|++++++||.||.||++|++.+ +.++|++++.+++... +..+ ++..++|+.|+++|++||.
T Consensus 1 dy~lvi~dS~v~h~L~~s~Yn~R~~ec~~a~~~v~~~~~~~~L~~v~~~~l~~~--~~~l~d~~~~rRa~Hvv~En~Rv~ 78 (183)
T d1piea2 1 DYDIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEFDAN--TDLIGDETLIKRARHAVYENNRTK 78 (183)
T ss_dssp TEEEEEEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHCCCSSGGGCCHHHHHHT--GGGTCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCcCcCcchhHHHHHHHHHHHHHHHHhcCcchHhhhcHHHHHHH--HhhcCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999998875 5678999999998877 6666 5778899999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 267 KGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 267 ~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
++++||+++|++.||++|++||.+++++|++|||++|.|++.+++..|++|+||||+|||||+++|++.+.+++|.++.
T Consensus 79 ~a~~al~~~d~~~~G~lm~~Sh~sl~~~~evs~~elD~Lv~~a~~~~G~~GaRmtGgGfGGcvialv~~~~~~~~~~~i 157 (183)
T d1piea2 79 IAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAV 157 (183)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHH
T ss_pred HhhhhhhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhCCCeEeeccccCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875699999999999999999999999999887754
|
| >d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Galactokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.2e-35 Score=258.49 Aligned_cols=178 Identities=48% Similarity=0.895 Sum_probs=155.2
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcc-cCCCCCcCHhHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ-KLTPGAPKWANYVKGVV 85 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~-~l~~~~~~w~~~v~~~~ 85 (349)
|+.|+||+ +|++||.||++ |||+++++++++++|++|+|.+.+...+......++++... ........|.+|+++++
T Consensus 36 rv~L~GEH-~dy~Gg~vl~~-Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (215)
T d1wuua1 36 RVNLIGEH-TDYNQGLVLPM-ALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVI 113 (215)
T ss_dssp EEEEECTT-CGGGTCEEEEE-EEEEEEEEEEEEETTCEEEEEECCSSSCSCSEEEEECCCSSCCCCCCSSGGGHHHHHHH
T ss_pred EEEEecCC-eeeCCceEEee-eccCcEEEEEEecCCCEEEEEEccCCCCcceEEeecccccccccccccchhhhhhhhhH
Confidence 34578997 78899999999 99999999999999999999998764444445556554321 22334568999999988
Q ss_pred HHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Q psy9976 86 SIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSV 165 (349)
Q Consensus 86 ~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~ 165 (349)
..+. ....+||++.++|+||+|+|||||||++||++.|+.++++.++ ++++++++|+++|+.++|.|||+|||++++
T Consensus 114 ~~~~--~~~~~g~~i~i~S~iP~gaGLgSSAA~~val~~al~~~~~~~~-~~~~la~~a~~~E~~~~G~~~G~mDq~as~ 190 (215)
T d1wuua1 114 QYYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG-TIAARAQVCQQAEHSFAGMPCGIMDQFISL 190 (215)
T ss_dssp HHCS--SSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCS-CHHHHHHHHHHHHHHHTCCCCCSHHHHHHH
T ss_pred hhhc--cCCCCCeEEEEecCcccCcccccchHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 8775 3446799999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hccCCeEEEEecCCCeeEEeeCCC
Q psy9976 166 MGEEGSALLIDCKTHEARHIPLGD 189 (349)
Q Consensus 166 ~gg~~~~~~~d~~~~~~~~l~~~~ 189 (349)
||+.|+++++||++++++++|+|.
T Consensus 191 ~g~~~~~~~id~~~~~~~~vp~~~ 214 (215)
T d1wuua1 191 MGQKGHALLIDCRSLETSLVPLSD 214 (215)
T ss_dssp HCCTTEEEEEETTTCCEEEEECCC
T ss_pred hCCCCeEEEEECCCCcEEeecCCC
Confidence 999999999999999999999975
|
| >d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Galactokinase species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=8.5e-35 Score=255.92 Aligned_cols=174 Identities=25% Similarity=0.387 Sum_probs=152.7
Q ss_pred hhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHH
Q psy9976 9 YLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIF 88 (349)
Q Consensus 9 ~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l 88 (349)
-++|| |.|++||+|||+ |||+++++++++++|+++++.|.+++ +....+++..+ ...+....|.+|+++++..+
T Consensus 30 ~L~Ge-H~Dy~gg~vl~~-AI~~~~~v~~~~~~d~~i~i~s~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l 103 (205)
T d1piea1 30 NLIGE-HTDYNGGYVFPA-SITIGTTGLARLREDKKVKLYSENFP--KLGVIEFDLDE--VEKKDGELWSNYVKGMIVML 103 (205)
T ss_dssp EEECC-SCTTTTCEEEEE-EEEEEEEEEEEECSSSEEEEEETTCG--GGCCEEEETTC--TTSCCTTCTHHHHHHHHHHH
T ss_pred EEecC-CeeECCCEeecc-cccceEEEEEecCCCCeeeeecCCCC--ccceeeccccc--cccccccchhHHHHHHHHHH
Confidence 35566 578999999999 99999999999999999999998762 12344555442 12234568999999999999
Q ss_pred HhcCCCC-CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhc
Q psy9976 89 NDRVAPV-PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMG 167 (349)
Q Consensus 89 ~~~~~~~-~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~g 167 (349)
.+.+... .||++.|.|+||+|+|||||||++||++.+++++++.++ ++.+++++|+++|+.++|.|||+|||++++||
T Consensus 104 ~~~~~~~~~G~~i~i~s~iP~gsGLgSSAAl~va~~~al~~~~~~~~-~~~~ia~~a~~~E~~~~g~~~G~~Dq~as~~g 182 (205)
T d1piea1 104 KGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNV-PRLELVQLGQKTENDYIGVNSGILDQFAIGFG 182 (205)
T ss_dssp HHTTCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHC
T ss_pred HHhCCccccCeEEEEecCCccccccCccHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhhcCCCCcHHHHHHHHhc
Confidence 8877654 699999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCCeEEEEecCCCeeEEeeCCC
Q psy9976 168 EEGSALLIDCKTHEARHIPLGD 189 (349)
Q Consensus 168 g~~~~~~~d~~~~~~~~l~~~~ 189 (349)
|.|+++++||++.+++.+|++.
T Consensus 183 ~~~~~~~~d~~~~~~~~ip~~l 204 (205)
T d1piea1 183 EVKKAIELDCNTLKYEMVPVEL 204 (205)
T ss_dssp BTTEEEEEETTTCCEEEEECCC
T ss_pred CCCeEEEEECCCCcEEecCccc
Confidence 9999999999999999998753
|
| >d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Galactokinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.9e-35 Score=249.60 Aligned_cols=170 Identities=28% Similarity=0.532 Sum_probs=140.6
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+.|+||- .|++||.|||+ |||+++++.++++++ +++.+..+ ....++++.+ + ....+|.+|+.+++.
T Consensus 7 Ri~l~GeH-~Dy~gg~vl~~-AI~~~~~v~~~~~~~--~~i~~~~~----~~~~~~~~~~---~-~~~~~~~~~~~~~~~ 74 (176)
T d1s4ea1 7 RVNLIGEH-TDYTYGYVMPM-AIDLYTIITAEKYDK--VQLYSEHF----NEEKTFTLDN---L-TKEGSWIDYVKGVLW 74 (176)
T ss_dssp EEESSCCS-CGGGTCEECEE-EEEEEEEEC----CC--BCCCBTTT----TC-C---CC----C-CCCSSTHHHHHHHHH
T ss_pred EEEEEccC-eeeCCCEEEeE-EeeeEEEEEEEcccc--eEEEeccC----Ccceeeeecc---c-cccccchhheehhhh
Confidence 34578885 56899999999 999999988877654 44555543 1233455442 2 235689999999999
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+.+.+....||++.|+|+||+|+|||||||++||++.|++++++.++ ++++++++|+++|+.++|.|||+|||++++|
T Consensus 75 ~~~~~~~~~~g~~i~i~s~iP~gsGLgSSAAl~va~~~al~~~~~~~~-~~~~l~~~a~~~E~~~~g~~~G~~Dq~~~~~ 153 (176)
T d1s4ea1 75 VLIQEGYKIGGLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLNI-DPLKKALLAKKAENEFVGVPCGILDQFAVVF 153 (176)
T ss_dssp HHHHTTCCCCCBC-CEEESSCTTSSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTSCCCCCSHHHHHHHH
T ss_pred hhhhhcccCCCeEEEEecCcccCccccchHHHHHHHHHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCCcchHHHHHHHh
Confidence 998888888899999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCC
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGD 189 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~ 189 (349)
||.++++++||++.+++++|+|.
T Consensus 154 gg~~~~~~~d~~~~~~~~i~~P~ 176 (176)
T d1s4ea1 154 GKKDNVIFLDTQTLQYEYIPFPK 176 (176)
T ss_dssp CCTTEEEEEETTTTEEEEEECCT
T ss_pred cCCCEEEEEeCCCCCEEecCCCC
Confidence 99999999999999999999973
|
| >d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Mevalonate kinase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.95 E-value=3.9e-27 Score=202.04 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=129.1
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+.++|||.+ .+||.||++ |||+++++.+++++++++++.+.+. .....+++++.....+....|..|+..++.
T Consensus 13 kv~L~GEh~~-~~G~~~l~~-aI~~~~~v~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (180)
T d1kkha1 13 KVILFGEHAV-VYGYRAISM-AIDLTSTIEIKETQEDEIILNLNDL----NKSLGLNLNEIKNINPNNFGDFKYCLCAIK 86 (180)
T ss_dssp EEEEECTTGG-GGTCCEEEE-EEEEEEEEEEEECCSSEEEEEETTT----TEEEEEETTTGGGCCGGGSGGGHHHHHHHH
T ss_pred EEEEEccCeE-EcCCEEEEE-EEeCEEEEEEEECCCCCcceeeecc----cceeeecchhccccCccchhhHHHHHHHHH
Confidence 5678999955 568999999 9999999999999999999999875 345566665432222223345566665554
Q ss_pred HHHh-cCCC-CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q psy9976 87 IFND-RVAP-VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVS 164 (349)
Q Consensus 87 ~l~~-~~~~-~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~ 164 (349)
...+ .+.. ..||++.+.|+||+++|||||||++||++.+|.++++.++ ++++++++|+++|+.++|.++| |||++|
T Consensus 87 ~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~l-~~~~l~~la~~~E~~~~g~~sg-~D~~~~ 164 (180)
T d1kkha1 87 NTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKEL-KDDEIAKLGYMVEKEIQGKASI-TDTSTI 164 (180)
T ss_dssp HHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHHHHHSSSCCS-HHHHHH
T ss_pred HHHHHhCCCCCCCEEEEEeccchhhcCccccchhHHHHHHHHHHHhCcCC-CHHHHHHHHHHHHHHhCCCCCH-HHHHHH
Confidence 4333 3332 3599999999999999999999999999999999999999 9999999999999999998655 799999
Q ss_pred HhccCCeEEEEecC
Q psy9976 165 VMGEEGSALLIDCK 178 (349)
Q Consensus 165 ~~gg~~~~~~~d~~ 178 (349)
+||| +++++..
T Consensus 165 ~~Gg---~i~~~~~ 175 (180)
T d1kkha1 165 TYKG---ILEIKNN 175 (180)
T ss_dssp HHCS---EEEESSS
T ss_pred HhCC---EEEEeCC
Confidence 9999 7777653
|
| >d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Mevalonate kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.92 E-value=9.9e-26 Score=199.69 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=125.7
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCccc-----------------
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK----------------- 69 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~----------------- 69 (349)
|+.|+|||.+.+ ||.||++ |||+++++.++|+++++|++.+.++. ....|++.....
T Consensus 13 Kv~L~GEh~v~~-G~~al~~-ai~~~~~v~v~~~~~~~v~i~s~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (225)
T d1kvka1 13 KVILHGEHAVVH-GKVALAV-ALNLRTFLVLRPQSNGKVSLNLPNVG----IKQVWDVATLQLLDTGFLEQGDVPAPTLE 86 (225)
T ss_dssp EEEEECTTGGGG-TCCEEEE-EEEEEEEEEEEECSSSEEEEEETTTT----EEEEEEHHHHHTSCC--------------
T ss_pred EEEEEeCceeec-CCCEEEE-EecccEEEEEEECCCCeEEEEECCCC----cceEEecccccccccccccccccCcchhh
Confidence 678999997775 9999999 99999999999999999999998762 233333211000
Q ss_pred ----------CCCC----CcCHhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCC
Q psy9976 70 ----------LTPG----APKWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTL 135 (349)
Q Consensus 70 ----------l~~~----~~~w~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~ 135 (349)
...+ ...|.+.+......+.+.....+|+++.+.|++|+|+|||||||++||++.++..+++....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~lP~g~GLGSSAAl~va~~~al~~~~~~~~~ 166 (225)
T d1kvka1 87 QLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTN 166 (225)
T ss_dssp --CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCC
T ss_pred hhhhHhhhhccccccchhhhhHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCCcccccchHHHHHHHHHHHHHhCcccC
Confidence 0000 01122223333444444556678999999999999999999999999999999999987541
Q ss_pred --------------CHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCeeEEe
Q psy9976 136 --------------KLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHI 185 (349)
Q Consensus 136 --------------~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l 185 (349)
++++++++|+.+|+.++|+||| |||++++||| +++|+ +.+++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~i~~lA~~~E~~~~g~~SG-~D~a~~~~Gg---~i~f~--~g~~~~l 224 (225)
T d1kvka1 167 PLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSG-VDNSVSTWGG---ALRYQ--QGKMSSL 224 (225)
T ss_dssp GGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCS-HHHHHHHHCS---EEEES--SSCEEEC
T ss_pred ccccchhccccchhhHHHHHHHHHHHHHHhCCCCcH-HHHHHHhcCc---eEEEe--CCCCCcC
Confidence 3578999999999999999999 6999999999 66664 4445543
|
| >d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Phosphomevalonate kinase (PMK) species: Streptococcus pneumoniae r6 [TaxId: 171101]
Probab=99.90 E-value=2.4e-24 Score=186.42 Aligned_cols=152 Identities=11% Similarity=-0.008 Sum_probs=121.7
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|++|+|||+|.++|+.+|++ |||+++++.++++++..+...+.... .....+ .....|...++.+..
T Consensus 9 K~iL~GE~aVv~~G~~ala~-ai~~~~~v~v~~~~~~~i~~~~~~~~------~~~~~~------~~~~~~~~~~~~~~~ 75 (194)
T d1k47a1 9 KLYWAGEYAILEPGQLALIK-DIPIYMRAEIAFSDSYRIYSDMFDFA------VDLRPN------PDYSLIQETIALMGD 75 (194)
T ss_dssp EEEEECTTGGGSTTCEEEEE-EEEEEEEEEEEECSSCEEEEEC---------------C------CCHHHHHHHHHHHHH
T ss_pred EEEEEeeeEEecCCCeEEEE-EEeceEEEEEEECCCceEEeeccccc------cccccC------cchhHHHHHHHHHHH
Confidence 68899999999999999999 99999999999998888776665421 111111 111112333344445
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCC---CCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHH
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGS---GLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYV 163 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~---GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a 163 (349)
.+...+.+..|+++.|.|++|.++ |||||||++||++.+++++++.++ ++++++++|..+|+.++|.+||. |+++
T Consensus 76 ~~~~~~~~~~~~~i~i~s~ip~~~~~~GLGSSAA~~va~~~al~~~~~~~l-s~~~i~~lA~~~e~~~~g~~SG~-D~a~ 153 (194)
T d1k47a1 76 FLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSV-DQNLLFKLTSAVLLKRGDNGSMG-DLAC 153 (194)
T ss_dssp HHHHTTCCCCCEEEEEESHHHHSTTSSCSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTTCCSCCH-HHHH
T ss_pred HHHHcCCCCCCeEEEEEccCccccCCCcccchHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhccCCCcc-chhH
Confidence 566677788999999999999998 999999999999999999999999 99999999999999999999996 9999
Q ss_pred HHhccCCeEEEEe
Q psy9976 164 SVMGEEGSALLID 176 (349)
Q Consensus 164 ~~~gg~~~~~~~d 176 (349)
++||| +++++
T Consensus 154 s~~GG---~i~y~ 163 (194)
T d1k47a1 154 IAAED---LVLYQ 163 (194)
T ss_dssp HHHTS---CEEEE
T ss_pred HHcCC---eEEEE
Confidence 99999 55554
|
| >d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Homoserine kinase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.80 E-value=7.2e-19 Score=147.77 Aligned_cols=143 Identities=19% Similarity=0.170 Sum_probs=114.4
Q ss_pred cE-EEecccccc-eEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCCCce
Q psy9976 21 QW-IIMMDVRQV-VTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGF 98 (349)
Q Consensus 21 G~-vl~~~Ai~~-~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~ 98 (349)
|| +|.+ |++. +.++.++++++..+++...... ++. ....|++..+++.+.+......||
T Consensus 17 GFD~lg~-Al~~~~d~v~v~~~~~~~i~i~~~~~~----------i~~--------~~~~n~~~~~~~~~~~~~~~~~~~ 77 (163)
T d1h72c1 17 GFDVFGL-CLKEPYDVIEVEAIDDKEIIIEVDDKN----------IPT--------DPDKNVAGIVAKKMIDDFNIGKGV 77 (163)
T ss_dssp GTTTEEE-EEEEEEEEEEEEEESSSSEEEEESCTT----------SCC--------CTTTSHHHHHHHHHHHHTTCCCEE
T ss_pred cHhHhhh-hhcCCccEEEEEECCCCeEEEEecCcc----------cCC--------chhhhhHHHHHHHHHHhcCCCCCE
Confidence 56 8999 9986 8899999998888887765421 110 012368888887776665556799
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEe-c
Q psy9976 99 NAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLID-C 177 (349)
Q Consensus 99 ~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d-~ 177 (349)
++++.++||.|+|||||||.++|++.++++++++++ ++++++++|.++|....|.++|- |.++|+||| +++.. .
T Consensus 78 ~i~i~~~IP~gaGLGsSSA~a~a~l~aln~l~~~~l-s~~~l~~~A~~~e~~~~g~~~gd-dv~~~~~GG---~~~~~~~ 152 (163)
T d1h72c1 78 KITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNL-DKLKLVDYASYGELASSGAKHAD-NVAPAIFGG---FTMVTNY 152 (163)
T ss_dssp EEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHSSCCCT-THHHHHHCS---EEEEEET
T ss_pred EEEEeeccccccccCccHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhhcCCCCch-HhHHHhhCC---EEEEecC
Confidence 999999999999999999999999999999999999 99999999999999999999993 556699999 44443 4
Q ss_pred CCCeeEEeeC
Q psy9976 178 KTHEARHIPL 187 (349)
Q Consensus 178 ~~~~~~~l~~ 187 (349)
.+.++..+|+
T Consensus 153 ~~~~~~~~P~ 162 (163)
T d1h72c1 153 EPLEVLHIPI 162 (163)
T ss_dssp TTTEEEEECC
T ss_pred CCCceEeCCC
Confidence 4556666665
|
| >d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Mevalonate kinase domain: Mevalonate kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=2.2e-19 Score=151.73 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=85.7
Q ss_pred CCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH-HHHH
Q psy9976 191 HQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRT-YKGA 269 (349)
Q Consensus 191 ~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv-~~~~ 269 (349)
|+++++|+||+++++|....-. ..+...+ .++.+ +.+.++..++..+..++ .+..
T Consensus 3 P~l~lll~~Tgv~r~T~~~v~~--------V~~~~~~------~~~~~----------~~~l~~~~~l~~~a~~~l~~~~ 58 (169)
T d1kvka2 3 PALQILLTNTKVPRSTKALVAG--------VRSRLIK------FPEIM----------APLLTSIDAISLECERVLGEMA 58 (169)
T ss_dssp CCEEEEEEECCCCCCHHHHHHH--------HHHHHHH------SHHHH----------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCcchHHHHHHH--------HHHHHHh------ChHHH----------HHHHHHHhHHHHHHHHHhhhhh
Confidence 5789999999999987521110 0011100 01111 11223334443333222 2223
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhh
Q psy9976 270 NALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRK 343 (349)
Q Consensus 270 ~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~ 343 (349)
.++..+|+..||++|+++|..|++ +++|||++|.|++.|++ .| +||||||||||||+++|++++..+++.+
T Consensus 59 ~~~~~~d~~~lg~lm~~~~~lL~~-lgVS~~~ld~lv~~a~~-~g-~gaKltGAGgGGc~ial~~~~~~~~~~~ 129 (169)
T d1kvka2 59 AAPVPEQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAA-HG-LHSKLTGAGGGGCGITLLKPGLERAKVE 129 (169)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHH-TT-CEEEECSSCSSSEEEEEECTTCCHHHHH
T ss_pred hhcccchHHHHHHHHHHhHHHHHh-cCcChHHHHHHHHHHHH-cC-ccccccCCCCCCeEEEEecccchHHHHH
Confidence 344557999999999999998886 79999999999999999 58 7999999999999999999876554433
|
| >d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Mevalonate kinase domain: Mevalonate kinase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.74 E-value=3e-18 Score=139.22 Aligned_cols=74 Identities=36% Similarity=0.581 Sum_probs=68.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhcc
Q psy9976 270 NALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKKS 346 (349)
Q Consensus 270 ~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~~ 346 (349)
+||+++|++.||++|+++|.+++. +++|+|++|.+++.+++ .| +|||+||||+|||+++|++++..+++++.+.
T Consensus 51 ~al~~~d~~~lg~lm~~~~~~l~~-lgvs~~~id~l~~~~~~-~g-~GaKitGAGgGG~~ial~~~~~~~~~~~~l~ 124 (137)
T d1kkha2 51 EALKIKNKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNR-FG-FGAKLTGAGGGGCVIILVNEEKEKELLKELN 124 (137)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHH-HS-SEEEECSSSSSEEEEEECCGGGHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHh-cC-CCcccccCCCCcEEEEEeChhhHHHHHHHHH
Confidence 678999999999999999999986 79999999999999999 58 7999999999999999999999998887653
|
| >d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Phosphomevalonate kinase (PMK) domain: Phosphomevalonate kinase (PMK) species: Streptococcus pneumoniae r6 [TaxId: 171101]
Probab=99.73 E-value=1.5e-17 Score=135.18 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-cCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeC
Q psy9976 256 HHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD-YEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVS 334 (349)
Q Consensus 256 ~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~ 334 (349)
.+.+.+. +.++.++|.++|++.||++|+++|..++.. .++++|++|.|++.+++ .| .++|+||||+|||+++|++
T Consensus 35 l~~~~~~--v~~~~~al~~~d~~~l~~~m~~~~~ll~~l~~~i~~~~l~~l~~~a~~-~g-~~ak~~GaGgGG~~i~l~~ 110 (135)
T d1k47a2 35 LTSSKET--VVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-LQ-AVAKSSGAGGGDCGIALSF 110 (135)
T ss_dssp HHHHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHTTTT-SS-EEEEECSSCSSSEEEEEEC
T ss_pred HHHHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHH-hc-cchhcccCcCCCeEEEEec
Confidence 3444444 899999999999999999999999999883 67899999999999998 57 5899999999999999997
Q ss_pred C-Cchhhhhhhc
Q psy9976 335 P-LNLRRGRKKK 345 (349)
Q Consensus 335 ~-~~~~~~~~~~ 345 (349)
+ +..+++++++
T Consensus 111 ~~~~~~~i~~~~ 122 (135)
T d1k47a2 111 DAQSTKTLKNRW 122 (135)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChhhHHHHHHHH
Confidence 5 4567676654
|
| >d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE species: Thermus thermophilus [TaxId: 274]
Probab=99.33 E-value=5.7e-12 Score=102.83 Aligned_cols=142 Identities=11% Similarity=0.104 Sum_probs=100.5
Q ss_pred EecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcc-cCCCCCcCHhHHHHHHHHHHHhcCCCCCceEEEE
Q psy9976 24 IMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ-KLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVI 102 (349)
Q Consensus 24 l~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~-~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~i 102 (349)
=|+ -||++..|. .+|+|+.+.+.|....++-.+.+++...+.. ... ....-.|.+..++..+.+......++++.+
T Consensus 5 aPA-KINL~L~V~-~kr~dGyH~l~s~~~~i~l~D~i~i~~~~~~~~~~-~p~~~~Nlv~ka~~~l~~~~~~~~~~~I~i 81 (148)
T d1ueka1 5 APA-KVNLGLSVR-FRREDGYHELHTLFAPFSLADRLVVEPVSSGLHFQ-GPYGRENLAYRAASLYLEAAGQPGGVRILL 81 (148)
T ss_dssp EEE-EEEEEEEEE-EECTTSSEEEEEEEEEEEEEEEEEEEEESSCEEEE-STTGGGSHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred ccc-eEeeeEeeC-ccCCCCcceeeEEEEEEECccccEEEccccccccc-ccccccchhhhhhhhhHHhcCCCceEEEEE
Confidence 356 888888876 5778888888887432222334444322111 000 111235899888888877665567999999
Q ss_pred EeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCee
Q psy9976 103 LSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEA 182 (349)
Q Consensus 103 ~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~ 182 (349)
.++||+++||||+||.++|++.+++++++.+. + +.+++.++ |. |...++.++ ..+....+..+
T Consensus 82 ~K~IP~~aGLGGGSsnAAa~l~~l~~~~~~~~-~---l~~la~~i---------Gs-DVPffl~~~---~~~~~G~Ge~l 144 (148)
T d1ueka1 82 EKRIPEGAGLGGGSSDAAQVLLALQALYPAEV-D---LFALARTL---------GA-DVPFFLLGR---GAEARGVGERL 144 (148)
T ss_dssp ECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC-C---HHHHHHHH---------CT-THHHHHHCS---EEEEETTTTEE
T ss_pred EeeEEEeeeccCCchhhhhHHHHHHHhhhhhh-H---HHHhhccc---------CC-CchhhccCC---CEEEEEeCcEe
Confidence 99999999999999999999999999998766 4 44555554 43 999999998 56666666666
Q ss_pred EEe
Q psy9976 183 RHI 185 (349)
Q Consensus 183 ~~l 185 (349)
+++
T Consensus 145 ~pl 147 (148)
T d1ueka1 145 KPL 147 (148)
T ss_dssp EEE
T ss_pred EEC
Confidence 664
|
| >d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=1.7e-11 Score=101.82 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=100.5
Q ss_pred ecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcc--cCC---CCCcCHhHHHHHHHHHHHh------cCC
Q psy9976 25 MMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ--KLT---PGAPKWANYVKGVVSIFND------RVA 93 (349)
Q Consensus 25 ~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~--~l~---~~~~~w~~~v~~~~~~l~~------~~~ 93 (349)
|+ -||++..|. .+|+|+.+.|.|....++-.+++++...+.. .+. .....+.|.+..+...+.+ ...
T Consensus 8 pA-KINL~L~V~-~kr~dgyH~i~S~~~~i~l~D~i~i~~~~~~~~~~~~~~~~~~~~~n~~~k~~~~l~~~~~~~~~~~ 85 (163)
T d1oj4a1 8 PA-KLNLFLYIT-GQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPVEGVEHEDNLIVRAARLLMKTAADSGRLP 85 (163)
T ss_dssp EE-EEEEEEEEE-EECTTSCEEEEEEEEEEEEEEEEEEEEESSSCEEECSCBTTBCGGGSHHHHHHHHHHHHHHHTTCSC
T ss_pred CE-eEEeeEEeC-CcCCCCcceEEEEEEEecCCcEEEEEeccccceeEecCccCCccccchHHHHHHHHHHHhhhhhhcc
Confidence 55 788887776 5677888888886422222233433322111 010 1123456777666655543 112
Q ss_pred CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEE
Q psy9976 94 PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSAL 173 (349)
Q Consensus 94 ~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~ 173 (349)
...+++|.|+++||.++|||+.||.++|++.+++++++.++ +.+++.++|.++ |. |...++.|+ ..
T Consensus 86 ~~~~~~I~i~KnIP~gaGLGGGSsnAAa~L~~l~~~~~~~l-~~~~l~~ia~~i---------Gs-Dvpffl~~~---~a 151 (163)
T d1oj4a1 86 TGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGL-SMDELAEMGLTL---------GA-DVPVFVRGH---AA 151 (163)
T ss_dssp TTCEEEEEEECCSCSSTTSCHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHGGG---------CT-THHHHHHCB---CE
T ss_pred cCCceEEEEEeeeeecccccCCCchHHHHHHHhhcccccCC-CHHHHHHHHHHc---------CC-cccccccCC---CE
Confidence 34689999999999999999999999999999999999999 999999998765 44 999999998 35
Q ss_pred EEecCCCeeEEe
Q psy9976 174 LIDCKTHEARHI 185 (349)
Q Consensus 174 ~~d~~~~~~~~l 185 (349)
+....+..++++
T Consensus 152 ~~~G~Ge~l~pl 163 (163)
T d1oj4a1 152 FAEGVGEILTPV 163 (163)
T ss_dssp EEETTTTEEEEC
T ss_pred EEEEcCCEEeeC
Confidence 566556556553
|
| >d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Homoserine kinase domain: Homoserine kinase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.68 E-value=3.8e-08 Score=78.32 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=81.3
Q ss_pred CeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9976 192 QYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANA 271 (349)
Q Consensus 192 ~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~a 271 (349)
+++++++.|++..+|. .+.++|.++ + + ..+.+.+..|+..++.+
T Consensus 2 ~l~~vl~~P~~~vsT~------------~aR~~LP~~----~--------------~------~~dav~n~~~~~~lv~a 45 (133)
T d1h72c2 2 KLDILIAIPNISINTK------------EAREILPKA----V--------------G------LKDLVNNVGKACGMVYA 45 (133)
T ss_dssp CCCEEEECCSSCCCHH------------HHHHTSCSC----C--------------C------HHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEECCCCCcHH------------HHHHhchhh----C--------------C------HHHHHHhhhhhHHHHHH
Confidence 4578999999988775 344555421 1 2 12345556678889999
Q ss_pred HhcCCHHHHHHHHHH--HHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 272 LKEGDFETFGKLMNE--SHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 272 l~~~d~~~lg~lm~~--s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
|.++|++.+++.+.+ -|+..|. -..|+++.+.+. .+ .|++|+-||||| +++++|++++.++++.+.+
T Consensus 46 l~~~d~~l~~~~~~~D~l~Ep~r~---~l~P~~~~ik~~-l~-~ga~~~~lSGSG--PTv~al~~~~~~~~~~~~l 114 (133)
T d1h72c2 46 LYNKDKSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEE-VK-DKVYGITISGSG--PSIIAFPKEEFIDEVENIL 114 (133)
T ss_dssp HHTTCHHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHH-HT-TTEEEEEECTTS--SCEEEEECGGGHHHHHHHH
T ss_pred HhccCHHHHHHHHhcCcccCceec---ccCCchHHHHHH-hh-cCceEEEEeCCC--CcEEEEeChHHHHHHHHHH
Confidence 999999999876543 3455554 368999999875 56 599999999998 9999999988777766554
|
| >d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE species: Thermus thermophilus [TaxId: 274]
Probab=97.57 E-value=1.9e-05 Score=60.92 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=38.1
Q ss_pred CChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCC-Cchhhhhhhcc
Q psy9976 298 SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP-LNLRRGRKKKS 346 (349)
Q Consensus 298 s~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~-~~~~~~~~~~~ 346 (349)
..|+++.+.+..++ .|+.++.|||+| +|+++++++ +.++++.++++
T Consensus 61 ~~p~l~~~~~~l~~-~g~~~~~mSGSG--st~F~l~~~~~~a~~~~~~l~ 107 (120)
T d1ueka2 61 LFPELKEVRGRMRA-LGLRGVLMSGSG--SAFFGLAEGPDHARRAAEALR 107 (120)
T ss_dssp HCTHHHHHHHHHHH-TTCEEEEECTTS--SCEEEECSSHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHH-hhhhheeecCCC--CeEEEEeCCHHHHHHHHHHHH
Confidence 45899999999999 599999999997 999999987 45666666553
|
| >d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Mevalonate 5-diphosphate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.54 E-value=0.0001 Score=61.15 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=51.1
Q ss_pred ceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhcc
Q psy9976 97 GFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGE 168 (349)
Q Consensus 97 g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg 168 (349)
.++|.-..++|.++||+||||-.+|++.|+.++++.++ +.+++-.+|+..- |..|- ++|||
T Consensus 101 ~~~I~S~N~FP~aaGLASSAsg~aAl~~al~~~~~~~~-~~~~~S~lARlGS----GSAcR------Si~Gg 161 (188)
T d1fi4a1 101 KLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQ-STSEISRIARKGS----GSACR------SLFGG 161 (188)
T ss_dssp CEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCS-CHHHHHHHHHHHH----GGGGG------GGSSS
T ss_pred eEEEEecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhhc----cchhh------hhcCC
Confidence 46777777899999999999999999999999999998 9999988888652 22222 78999
|
| >d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.018 Score=43.57 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=32.8
Q ss_pred ChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCc-hhhhhhhc
Q psy9976 299 CKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLN-LRRGRKKK 345 (349)
Q Consensus 299 ~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~-~~~~~~~~ 345 (349)
.|++..+.+...+ .| .++|||+| +|+++++++.. ++++.+++
T Consensus 56 ~P~I~~~~~~L~~-~g--~~~MSGSG--stvF~~f~~~~~a~~~~~~l 98 (120)
T d1oj4a2 56 FREVDAVLSWLLE-YA--PSRLTGTG--ACVFAEFDTESEARQVLEQA 98 (120)
T ss_dssp CHHHHHHHHHHTT-TS--CEEECTTS--SCEEEEESSHHHHHHHHHHS
T ss_pred CHHHHHHHHHHhh-cc--cceecCCC--CEEEEEeCCHHHHHHHHHHc
Confidence 4889999988888 47 47999998 99999998854 55565554
|
| >d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Mevalonate 5-diphosphate decarboxylase domain: Mevalonate 5-diphosphate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.94 E-value=0.96 Score=36.70 Aligned_cols=81 Identities=16% Similarity=0.038 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-------cCCCChhHHHHHHHHHcC----CCCeEEEecccCccceeEE
Q psy9976 263 DRTYKGANALKEGDFETFGKLMNESHDSLRDD-------YEVSCKELDDIAHCAQSL----PGVLGCRMTGGGFGGCAIA 331 (349)
Q Consensus 263 ~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-------~~vs~p~ld~l~~~a~~~----~Ga~gakltGaG~GG~~i~ 331 (349)
+|..++.+||+++||..||++.-.+...+... +-..+|.-..+++...++ .|...+--.-|| +.+..
T Consensus 42 ~r~~~m~~AI~~rDF~~f~eite~ds~~mHA~~l~s~Ppi~Ylnd~S~~ii~~V~~~r~~~g~~~v~yT~DAG--PNv~l 119 (203)
T d1fi4a2 42 KRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAVL 119 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEEE
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHHHhcCCCCeEEECchHHHHHHHHHHHHHhcCCccEEEEECCC--CCEEE
Confidence 46899999999999999999987665554331 233455544444444322 234455577787 88888
Q ss_pred EeCCCchhhhhhhc
Q psy9976 332 LVSPLNLRRGRKKK 345 (349)
Q Consensus 332 l~~~~~~~~~~~~~ 345 (349)
|+.++..+++.+.+
T Consensus 120 l~~~~~~~~v~~~l 133 (203)
T d1fi4a2 120 YYLAENESKLFAFI 133 (203)
T ss_dssp EEEGGGHHHHHHHH
T ss_pred EEccccHHHHHHHH
Confidence 88888888766543
|