Psyllid ID: psy998

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
ELLSDFRPLLFTDGSRRLLNGSTSTANIRHSSSVISQEKEPVPDKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVTKYELQKLPSHFVPPTLLESGSPETSSVPLKYPFCCSETFTHSTEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLRYNTSISYSNDIAGPSVDPKDRATIQRHFLSYNFETVMGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNTLKESNGVKKKASN
ccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHccEEccccccccccEEEEEEcccccccccccEEEEEEEEEEEEEEccccccHHHHHHHHHHHccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccEEEEEcccccccccccEEEEccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
cHHHHccccccccHHHHHHcccccccccccccccccccccccccHHEEEEEEEEEcccHHHHHHHHHHHHHHHHHccccEcEEcccccccHHHHHHHHcHHHEEccEEEEEEEHHHEEEEHHHccccHHHHHHHHHHHccccccEEEEEHHHHccccHHccccccccccccccccccccccccHHHHHcccccccccEEEEEEEEEccccEEEEEccccccccccccEEcccHHHHHHHHHHHHHHHcccccccccEEEEEEEccccEEEEEcccHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccc
ellsdfrpllftdgsrrllngststanirhsssvisqekepvpdklySRICCelrandpevmnSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRwmnfhkltgstADTFLEYIQRNLPEGVALKVTKYELqklpshfvpptllesgspetssvplkypfccsetfthstekpkrFYKKVGilesngdyeisldhrklktpngvlfkvssEPLALAIAAEWDAQHETIQRSTMHlryntsisysndiagpsvdpkdratIQRHFLSYNFETVMGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNTlkesngvkkkasn
ellsdfrpllftdgsrrllngststanirhsssvisqekepvpdKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERytllrsvhvvkRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVTKYELQKLPSHFVPPTLLESGSPETSSVPLKYPFCCSEtfthstekpkrfYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLRYNTSISYSNDIAGPSVDPKDRATIQRHFLSYNFETVMGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNtlkesngvkkkasn
ELLSDFRPLLFTDGSRRLLNGSTSTANIRHSSSVISQEKEPVPDKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVTKYELQKLPSHFVPPTLLESGSPETSSVPLKYPFCCSETFTHSTEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLRYNTSISYSNDIAGPSVDPKDRATIQRHFLSYNFETVMGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNTLKESNGVKKKASN
********************************************KLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVTKYELQKLPSHFVPP************VPLKYPFCCSETFTHSTEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLRYNTSISYSNDIA*******DRATIQRHFLSYNFETVMGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNTL************
******R*LLFT*******************************DKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVTKYELQKLPSHFVPPTL*******************************RFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLRYNTSISYSNDIAGPSVDPKDRATIQRHFLSYNFETVMGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNTL************
ELLSDFRPLLFTDGSRRLLNGSTSTA*****************DKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVTKYELQKLPSHFVPPTLL*********VPLKYPFCCSETFTHSTEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLRYNTSISYSNDIAGPSVDPKDRATIQRHFLSYNFETVMGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNTLKE**********
*****FRPLLFTD***************************PVPDKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVTKYELQKLPSHFVPPT***************YPFCCSETFTHSTEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLRYNTSISYSNDIAGPSVDPKDRATIQRHFLSYNFETVMGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNTLKESNGVK*****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ELLSDFRPLLFTDGSRRLLNGSTSTANIRHSSSVISQEKEPVPDKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVTKYELQKLPSHFVPPTLLESGSPETSSVPLKYPFCCSETFTHSTEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLRYNTSISYSNDIAGPSVDPKDRATIQRHFLSYNFETVMGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNTLKESNGVKKKASN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query380 2.2.26 [Sep-21-2011]
Q9VFB2173 28S ribosomal protein S10 yes N/A 0.323 0.710 0.658 6e-44
Q8N5M1289 ATP synthase mitochondria yes N/A 0.544 0.716 0.360 3e-33
Q91YY4289 ATP synthase mitochondria yes N/A 0.521 0.685 0.363 1e-32
P82670201 28S ribosomal protein S10 yes N/A 0.313 0.592 0.504 1e-27
Q5RFM3201 28S ribosomal protein S10 no N/A 0.313 0.592 0.512 1e-27
P82664201 28S ribosomal protein S10 no N/A 0.313 0.592 0.512 1e-27
Q80ZK0160 28S ribosomal protein S10 no N/A 0.313 0.743 0.512 2e-27
Q5SPH9187 Probable 28S ribosomal pr yes N/A 0.397 0.807 0.405 4e-27
Q7TQ82155 28S ribosomal protein S10 no N/A 0.313 0.767 0.495 5e-27
Q1LZ96289 ATP synthase mitochondria no N/A 0.310 0.408 0.483 8e-26
>sp|Q9VFB2|RT10_DROME 28S ribosomal protein S10, mitochondrial OS=Drosophila melanogaster GN=mRpS10 PE=2 SV=2 Back     alignment and function desciption
 Score =  178 bits (451), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 101/123 (82%)

Query: 41  PVPDKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSV 100
           P PDKLYS++  ELR  DP V+ SY+ FAT AA+HL IE G+C++ +KAHHER TLL+SV
Sbjct: 47  PEPDKLYSKLEIELRGIDPAVLKSYTWFATTAAEHLGIEKGKCWSPRKAHHERMTLLKSV 106

Query: 101 HVVKRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVTKYELQKLPSHF 160
           H+ K+ RVQYEVRT+FR+MNFHKLTGST DTFLEYI+RNLPEGVAL+ ++ ELQ++P H 
Sbjct: 107 HIYKKHRVQYEVRTHFRYMNFHKLTGSTLDTFLEYIERNLPEGVALQASRTELQEIPEHL 166

Query: 161 VPP 163
             P
Sbjct: 167 RQP 169

Drosophila melanogaster (taxid: 7227)
>sp|Q8N5M1|ATPF2_HUMAN ATP synthase mitochondrial F1 complex assembly factor 2 OS=Homo sapiens GN=ATPAF2 PE=1 SV=1 Back     alignment and function description
>sp|Q91YY4|ATPF2_MOUSE ATP synthase mitochondrial F1 complex assembly factor 2 OS=Mus musculus GN=Atpaf2 PE=2 SV=1 Back     alignment and function description
>sp|P82670|RT10_BOVIN 28S ribosomal protein S10, mitochondrial OS=Bos taurus GN=MRPS10 PE=1 SV=2 Back     alignment and function description
>sp|Q5RFM3|RT10_PONAB 28S ribosomal protein S10, mitochondrial OS=Pongo abelii GN=MRPS10 PE=2 SV=1 Back     alignment and function description
>sp|P82664|RT10_HUMAN 28S ribosomal protein S10, mitochondrial OS=Homo sapiens GN=MRPS10 PE=1 SV=2 Back     alignment and function description
>sp|Q80ZK0|RT10_MOUSE 28S ribosomal protein S10, mitochondrial OS=Mus musculus GN=Mrps10 PE=2 SV=1 Back     alignment and function description
>sp|Q5SPH9|RT10_DANRE Probable 28S ribosomal protein S10, mitochondrial OS=Danio rerio GN=mrps10 PE=2 SV=1 Back     alignment and function description
>sp|Q7TQ82|RT10_RAT 28S ribosomal protein S10, mitochondrial OS=Rattus norvegicus GN=Mrps10 PE=2 SV=1 Back     alignment and function description
>sp|Q1LZ96|ATPF2_BOVIN ATP synthase mitochondrial F1 complex assembly factor 2 OS=Bos taurus GN=ATPAF2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
195115557278 GI17323 [Drosophila mojavensis] gi|19391 0.478 0.654 0.436 2e-45
195110287166 GI22917 [Drosophila mojavensis] gi|19391 0.426 0.975 0.555 8e-45
194878355279 GG21292 [Drosophila erecta] gi|190657233 0.502 0.684 0.424 2e-44
194747287164 GF24771 [Drosophila ananassae] gi|190623 0.421 0.975 0.549 2e-43
195454206157 GK14488 [Drosophila willistoni] gi|19417 0.389 0.942 0.594 2e-43
195328819163 GM24206 [Drosophila sechellia] gi|194120 0.418 0.975 0.555 2e-43
195570738163 GD18996 [Drosophila simulans] gi|1941992 0.418 0.975 0.549 5e-43
195157614162 GL12532 [Drosophila persimilis] gi|19411 0.415 0.975 0.549 7e-43
170036765263 ATP synthase mitochondrial F1 complex as 0.452 0.653 0.445 1e-42
195390105166 GJ23200 [Drosophila virilis] gi|19415179 0.318 0.728 0.661 2e-42
>gi|195115557|ref|XP_002002323.1| GI17323 [Drosophila mojavensis] gi|193912898|gb|EDW11765.1| GI17323 [Drosophila mojavensis] Back     alignment and taxonomy information
 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/243 (43%), Positives = 137/243 (56%), Gaps = 61/243 (25%)

Query: 195 PKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRST 254
           PKRFYK   +L ++  YE++LDHRKLKTPNG LF V SEPLA+A+A E+DAQ E I+RS 
Sbjct: 36  PKRFYKTTNVLSTDSGYEVTLDHRKLKTPNGTLFTVKSEPLAIAVATEFDAQKEHIERSR 95

Query: 255 MHLRY--NTSISYSNDIAGPSV-------------------------------DP----- 276
           MH+     T+I   N +  P +                               DP     
Sbjct: 96  MHISALCFTAIDNPNKLTKPDMVNYLLNFIATDTVLFQYDNEKDLQELQQNEWDPVIDWF 155

Query: 277 ---------------------KDRATIQRHFLSYNFETVMGVNFAVETLKSIVLTLACID 315
                                +D+  I +HF SYN ET+ G  FAV+TLKSIVL  A I+
Sbjct: 156 NQRFETNLKKTMDITPPQVSDEDKMKIAKHFHSYNLETLHGYIFAVDTLKSIVLACAVIE 215

Query: 316 RKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNTLKESNGVK 375
           +K+++E AV LS+LEEEYQ+  WGRVEWAHD  QQELQARLAAA+ +VH+N     N +K
Sbjct: 216 QKITVERAVALSRLEEEYQLKFWGRVEWAHDFSQQELQARLAAAVLFVHLNC--SENFIK 273

Query: 376 KKA 378
           +K+
Sbjct: 274 QKS 276

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195110287|ref|XP_001999713.1| GI22917 [Drosophila mojavensis] gi|193916307|gb|EDW15174.1| GI22917 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|194878355|ref|XP_001974046.1| GG21292 [Drosophila erecta] gi|190657233|gb|EDV54446.1| GG21292 [Drosophila erecta] Back     alignment and taxonomy information
>gi|194747287|ref|XP_001956084.1| GF24771 [Drosophila ananassae] gi|190623366|gb|EDV38890.1| GF24771 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195454206|ref|XP_002074136.1| GK14488 [Drosophila willistoni] gi|194170221|gb|EDW85122.1| GK14488 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|195328819|ref|XP_002031109.1| GM24206 [Drosophila sechellia] gi|194120052|gb|EDW42095.1| GM24206 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195570738|ref|XP_002103361.1| GD18996 [Drosophila simulans] gi|194199288|gb|EDX12864.1| GD18996 [Drosophila simulans] Back     alignment and taxonomy information
>gi|195157614|ref|XP_002019691.1| GL12532 [Drosophila persimilis] gi|194116282|gb|EDW38325.1| GL12532 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|170036765|ref|XP_001846232.1| ATP synthase mitochondrial F1 complex assembly factor 2 [Culex quinquefasciatus] gi|167879675|gb|EDS43058.1| ATP synthase mitochondrial F1 complex assembly factor 2 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|195390105|ref|XP_002053709.1| GJ23200 [Drosophila virilis] gi|194151795|gb|EDW67229.1| GJ23200 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
FB|FBgn0038307173 mRpS10 "mitochondrial ribosoma 0.405 0.890 0.560 2.2e-41
UNIPROTKB|I3LAB4295 ATPAF2 "Uncharacterized protei 0.310 0.4 0.429 2e-35
FB|FBgn0021856279 l(2)k14505 "lethal (2) k14505" 0.381 0.519 0.483 4.9e-30
UNIPROTKB|Q8N5M1289 ATPAF2 "ATP synthase mitochond 0.431 0.567 0.410 2.5e-28
ZFIN|ZDB-GENE-040914-39218 mrps10 "mitochondrial ribosoma 0.365 0.637 0.433 8.2e-28
ZFIN|ZDB-GENE-050411-18291 atpaf2 "ATP synthase mitochond 0.413 0.539 0.415 3.5e-27
UNIPROTKB|P82664201 MRPS10 "28S ribosomal protein 0.334 0.631 0.5 4.5e-27
UNIPROTKB|F1RUU2201 MRPS10 "Uncharacterized protei 0.313 0.592 0.512 4.5e-27
UNIPROTKB|P82670201 MRPS10 "28S ribosomal protein 0.313 0.592 0.504 5.7e-27
MGI|MGI:1928139160 Mrps10 "mitochondrial ribosoma 0.313 0.743 0.512 5.7e-27
FB|FBgn0038307 mRpS10 "mitochondrial ribosomal protein S10" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 88/157 (56%), Positives = 116/157 (73%)

Query:     7 RPLLFTDGSRRLLNGSTSTANIRHSSSVISQEKEPVPDKLYSRICCELRANDPEVMNSYS 66
             + L +T   R L   +TS+  ++ + S  +    P PDKLYS++  ELR  DP V+ SY+
Sbjct:    16 KTLRWTQPMRALSTVNTSSG-VQGNLSPAAPA--PEPDKLYSKLEIELRGIDPAVLKSYT 72

Query:    67 KFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTG 126
              FAT AA+HL IE G+C++ +KAHHER TLL+SVH+ K+ RVQYEVRT+FR+MNFHKLTG
Sbjct:    73 WFATTAAEHLGIEKGKCWSPRKAHHERMTLLKSVHIYKKHRVQYEVRTHFRYMNFHKLTG 132

Query:   127 STADTFLEYIQRNLPEGVALKVTKYELQKLPSHFVPP 163
             ST DTFLEYI+RNLPEGVAL+ ++ ELQ++P H   P
Sbjct:   133 STLDTFLEYIERNLPEGVALQASRTELQEIPEHLRQP 169
GO:0006412 "translation" evidence=ISS
GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS
GO:0003735 "structural constituent of ribosome" evidence=ISS
GO:0005761 "mitochondrial ribosome" evidence=ISS
UNIPROTKB|I3LAB4 ATPAF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0021856 l(2)k14505 "lethal (2) k14505" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N5M1 ATPAF2 "ATP synthase mitochondrial F1 complex assembly factor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040914-39 mrps10 "mitochondrial ribosomal protein S10" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050411-18 atpaf2 "ATP synthase mitochondrial F1 complex assembly factor 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P82664 MRPS10 "28S ribosomal protein S10, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RUU2 MRPS10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P82670 MRPS10 "28S ribosomal protein S10, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1928139 Mrps10 "mitochondrial ribosomal protein S10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P82670RT10_BOVINNo assigned EC number0.50410.31310.5920yesN/A
Q9VFB2RT10_DROMENo assigned EC number0.65850.32360.7109yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
pfam07542122 pfam07542, ATP12, ATP12 chaperone protein 1e-23
pfam0033897 pfam00338, Ribosomal_S10, Ribosomal protein S10p/S 3e-20
COG5387264 COG5387, COG5387, Chaperone required for the assem 3e-14
TIGR0104999 TIGR01049, rpsJ_bact, ribosomal protein S10, bacte 3e-09
PRK00596102 PRK00596, rpsJ, 30S ribosomal protein S10; Reviewe 9e-07
COG0051104 COG0051, RpsJ, Ribosomal protein S10 [Translation, 2e-05
CHL00135101 CHL00135, rps10, ribosomal protein S10; Validated 5e-04
>gnl|CDD|203677 pfam07542, ATP12, ATP12 chaperone protein Back     alignment and domain information 
 Score = 94.1 bits (235), Expect = 1e-23
 Identities = 42/100 (42%), Positives = 52/100 (52%), Gaps = 12/100 (12%)

Query: 196 KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTM 255
           KRFYK+V + E  G + + LD R +KTP      V SE LA AIAAEWDAQ E I  +TM
Sbjct: 1   KRFYKEVSVEEEEGGFAVLLDGRPVKTPAKNPLAVPSEALAEAIAAEWDAQGEVIDPATM 60

Query: 256 HLR--YNTSISYSNDIAGPSVDPKDRATIQRHFLSYNFET 293
            L    NT+I    D+        DR  +    L Y  +T
Sbjct: 61  PLTRLANTAI----DLVAE-----DRDAVIEDLLRY-LDT 90

Mitochondrial F1-ATPase is an oligomeric enzyme composed of five distinct subunit polypeptides. The alpha and beta subunits make up the bulk of protein mass of F1. In Saccharomyces cerevisiae both subunits are synthesised as precursors with amino-terminal targeting signals that are removed upon translocation of the proteins to the matrix compartment. These proteins include examples from eukaryotes and bacteria and may have chaperone activity, being involved in F1 ATPase complex assembly. Length = 122
>gnl|CDD|201165 pfam00338, Ribosomal_S10, Ribosomal protein S10p/S20e Back     alignment and domain information
>gnl|CDD|227677 COG5387, COG5387, Chaperone required for the assembly of the mitochondrial F1-ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|130121 TIGR01049, rpsJ_bact, ribosomal protein S10, bacterial/organelle Back     alignment and domain information
>gnl|CDD|179076 PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed Back     alignment and domain information
>gnl|CDD|223129 COG0051, RpsJ, Ribosomal protein S10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|177057 CHL00135, rps10, ribosomal protein S10; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 380
KOG3015|consensus283 100.0
COG5387264 Chaperone required for the assembly of the mitocho 100.0
TIGR0104999 rpsJ_bact ribosomal protein S10, bacterial/organel 99.96
PRK00596102 rpsJ 30S ribosomal protein S10; Reviewed 99.96
CHL00135101 rps10 ribosomal protein S10; Validated 99.96
COG0051104 RpsJ Ribosomal protein S10 [Translation, ribosomal 99.95
KOG3321|consensus175 99.95
PF0033897 Ribosomal_S10: Ribosomal protein S10p/S20e; InterP 99.94
PRK12271102 rps10p 30S ribosomal protein S10P; Reviewed 99.94
TIGR0104699 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S2 99.93
PTZ00039115 40S ribosomal protein S20; Provisional 99.93
PF07542122 ATP12: ATP12 chaperone protein; InterPro: IPR01141 99.91
KOG4060|consensus176 99.87
KOG0900|consensus121 99.41
>KOG3015|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.8e-51  Score=387.32  Aligned_cols=175  Identities=49%  Similarity=0.799  Sum_probs=170.9

Q ss_pred             CCccceeeeeEEeC--CcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhcc-cccCCCcccc--------------
Q psy998          195 PKRFYKKVGILESN--GDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQH-ETIQRSTMHL--------------  257 (380)
Q Consensus       195 ~kRFyk~v~v~~~~--gg~~V~LDgR~lkTP~~~~l~vPs~~LA~aiA~EW~~Q~-e~I~p~~MPL--------------  257 (380)
                      .|||||+|++...+  |||.|.||||++|||.|+++.||+++||.+||.||+.|. +.|+|++|||              
T Consensus        44 ~krF~kkvs~~~g~~~g~~~v~LD~R~lKTP~g~~f~v~s~~LA~~ia~Ewdsq~s~~i~~~~mplt~L~~taid~~~~~  123 (283)
T KOG3015|consen   44 SKRFYKKVSTLTGDAFGGQEVQLDGRTLKTPKGNPFKVRSEKLAIAIALEWDSQKSTSIRPFTMPLTSLVFTAIDNPSEL  123 (283)
T ss_pred             HHHHHhhhhheecccCCceEEecccccccCCCCCeeecccHHHHHHHHHHHhhcccccccccccHHHHHHHHHhhccCcc
Confidence            58999999998876  999999999999999999999999999999999999998 8999999999              


Q ss_pred             ------------------------------------------------ccCceeeeecCCCCCCCCHHHHHHHHHHHhcC
Q psy998          258 ------------------------------------------------RYNTSISYSNDIAGPSVDPKDRATIQRHFLSY  289 (380)
Q Consensus       258 ------------------------------------------------~~gv~l~~~~gi~~~~q~~~~~~~l~~~l~~l  289 (380)
                                                                      +|||++.++++|+++.|++.+++++++||.++
T Consensus       124 ~kd~i~~~llrfldtDTvlf~~pe~e~l~~l~~~Q~e~w~Plie~~e~~lgvkl~~~~~I~~~~q~e~~ke~i~~~l~s~  203 (283)
T KOG3015|consen  124 NKDTISNQLLRFLDTDTVLFFSPESEDLGRLRDLQVEEWDPLIEWFENRLGVKLQPSDNILGGKQAEKDKEAIDKWLSSL  203 (283)
T ss_pred             cHHHHHHHHHHHhccCeEEEecCChhhhhHHHHHHHHhhHHHHHHHHHHhCcceeecccccCCcccHHHHHHHHHHHHhc
Confidence                                                            79999999999999999999999999999999


Q ss_pred             ChhhhHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHhhhhHHHhhhhhcCcCCCcCHhHHHHHHHHHHHHHHHHhcccc
Q psy998          290 NFETVMGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNTLK  369 (380)
Q Consensus       290 ~~~~L~al~~~~~~~kS~vlalal~~g~l~~e~A~~~a~lEe~~Q~~~WG~VE~~HD~e~~~~~~~l~aa~lf~~l~~~~  369 (380)
                      |+|+|+||+.+|..+||||||+++++|++++|+|+++|||||+||+++||+|||+||+|.+|++++++||.+|+++++++
T Consensus       204 n~w~Lagle~~v~s~KSfVia~~ii~~~l~~d~Av~larLEe~yQvekWG~VEwaHdi~~~eL~~r~~aa~lf~~l~~~~  283 (283)
T KOG3015|consen  204 NFWALAGLEFAVASLKSFVIALGIIEGKLDVDKAVALARLEEEYQVEKWGNVEWAHDIEKQELRARLSAATLFVHLNSEN  283 (283)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999854

>COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle Back     alignment and domain information
>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed Back     alignment and domain information
>CHL00135 rps10 ribosomal protein S10; Validated Back     alignment and domain information
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3321|consensus Back     alignment and domain information
>PF00338 Ribosomal_S10: Ribosomal protein S10p/S20e; InterPro: IPR001848 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed Back     alignment and domain information
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic) Back     alignment and domain information
>PTZ00039 40S ribosomal protein S20; Provisional Back     alignment and domain information
>PF07542 ATP12: ATP12 chaperone protein; InterPro: IPR011419 This entry represents a group of ATPase F1F0-assembly proteins, including ATP12 and ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2) Back     alignment and domain information
>KOG4060|consensus Back     alignment and domain information
>KOG0900|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
2p4x_A239 Crystal Structure Of Atp12 From Paracoccus Denitrif 2e-08
2zd2_A234 D202k Mutant Of P. Denitrificans Atp12p Length = 23 3e-08
2r6i_A284 Crystal Structure Of Atu1473 Protein, A Putative Ch 2e-04
>pdb|2P4X|A Chain A, Crystal Structure Of Atp12 From Paracoccus Denitrificans Length = 239 Back     alignment and structure 
Iteration: 1

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 189 THSTE-KPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQH 247
           +H +E K +RF+  VGI +  G + + LD R L+TP     ++ +E LALAIA EW A  
Sbjct: 2   SHMSEWKARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQ 61
Query: 248 ETIQRSTMHL 257
           E I  + M L
Sbjct: 62  EVIDPNAMPL 71
>pdb|2ZD2|A Chain A, D202k Mutant Of P. Denitrificans Atp12p Length = 234 Back     alignment and structure
>pdb|2R6I|A Chain A, Crystal Structure Of Atu1473 Protein, A Putative Chaperone From Agrobacterium Tumefaciens Length = 284 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
2r6i_A284 AGR_C_2717P, uncharacterized protein ATU1473; chap 2e-36
2r31_A239 ATP12 ATPase; chaperone F1 ATPase assembly ATP12P, 1e-31
2vqe_J105 30S ribosomal protein S10, 30S ribosomal protein S 3e-12
3r8n_J98 30S ribosomal protein S10; protein biosynthesis, R 7e-12
3bbn_J197 Ribosomal protein S10; small ribosomal subunit, sp 1e-10
3u5c_U121 40S ribosomal protein S20; translation, ribosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
3iz6_J128 40S ribosomal protein S20 (S10P); eukaryotic ribos 1e-05
2zkq_j119 40S ribosomal protein S20E; protein-RNA complex, 4 8e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 1e-04
2xzm_J120 Ribosomal protein S10 containing protein; ribosome 8e-04
>2r6i_A AGR_C_2717P, uncharacterized protein ATU1473; chaperone, structural genomics, APC6123, PSI-2, protein STRU initiative; 2.59A {Agrobacterium tumefaciens str} SCOP: d.381.1.1 Length = 284 Back     alignment and structure
 Score =  132 bits (333), Expect = 2e-36
 Identities = 50/241 (20%), Positives = 76/241 (31%), Gaps = 60/241 (24%)

Query: 185 SETFTHSTEKPKRFYKKVGILE-SNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEW 243
                     PKRFYK V + +   G + I LD + L+TP        S  LA  +  EW
Sbjct: 41  RAQIQMQKPLPKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEW 100

Query: 244 DAQHETIQRSTMHLR--YNTSISYSNDIAGPSVD---------------PKDRATIQRHF 286
           DAQ E +    M +    NT+I           +                   A + R  
Sbjct: 101 DAQKEVVNPVVMPVSRHVNTAIDGIASDTQAVFEDILRFSSSDLLCYRAGDPEALVARQT 160

Query: 287 LSYN-----FETVMGVNFAV-------------------------------------ETL 304
             ++        V+G  F +                                        
Sbjct: 161 DYWDPVLDWATNVLGARFILVEGVMHRDQPREAIAAFAVTLKKYDTPIALAALHTMTSLT 220

Query: 305 KSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVH 364
            S +L LA  + +L++EEA  L+ L+E++    WG  E A +     L    AA      
Sbjct: 221 GSAILALALAEGELTLEEAWALAHLDEDWTAEQWGEDEEALERRAVRLIDMRAALNVLES 280

Query: 365 V 365
           +
Sbjct: 281 L 281
>2r31_A ATP12 ATPase; chaperone F1 ATPase assembly ATP12P, chaperone; 1.00A {Paracoccus denitrificans} SCOP: d.381.1.1 PDB: 2p4x_A 2zd2_A Length = 239 Back     alignment and structure
>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ... Length = 105 Back     alignment and structure
>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 197 Back     alignment and structure
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J* Length = 121 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 128 Back     alignment and structure
>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 119 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_J Length = 120 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
2r31_A239 ATP12 ATPase; chaperone F1 ATPase assembly ATP12P, 100.0
2r6i_A284 AGR_C_2717P, uncharacterized protein ATU1473; chap 100.0
3j20_L102 30S ribosomal protein S10P; archaea, archaeal, KIN 99.96
3r8n_J98 30S ribosomal protein S10; protein biosynthesis, R 99.96
2xzm_J120 Ribosomal protein S10 containing protein; ribosome 99.95
3u5c_U121 40S ribosomal protein S20; translation, ribosome, 99.95
2vqe_J105 30S ribosomal protein S10, 30S ribosomal protein S 99.95
3iz6_J128 40S ribosomal protein S20 (S10P); eukaryotic ribos 99.95
2zkq_j119 40S ribosomal protein S20E; protein-RNA complex, 4 99.94
3bbn_J197 Ribosomal protein S10; small ribosomal subunit, sp 99.94
3d3c_J87 30S ribosomal protein S10, N utilization substance 99.72
3r2c_J83 Protein NUSE, 30S ribosomal protein S10; cross spe 99.66
>2r31_A ATP12 ATPase; chaperone F1 ATPase assembly ATP12P, chaperone; 1.00A {Paracoccus denitrificans} SCOP: d.381.1.1 PDB: 2p4x_A 2zd2_A Back     alignment and structure
Probab=100.00  E-value=4.6e-58  Score=434.30  Aligned_cols=174  Identities=28%  Similarity=0.433  Sum_probs=170.7

Q ss_pred             CCCCccceeeeeEEeCCcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhcccccCCCcccc---------------
Q psy998          193 EKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHL---------------  257 (380)
Q Consensus       193 ~~~kRFyk~v~v~~~~gg~~V~LDgR~lkTP~~~~l~vPs~~LA~aiA~EW~~Q~e~I~p~~MPL---------------  257 (380)
                      ..+|||||+|+|.+.+|||+|+||||+||||+|++|+||+++||.+||+||++|++.|+|++|||               
T Consensus         7 ~~~kRFyk~v~v~~~~gg~~V~LDgR~lkTP~~~~L~vPs~~LA~aiA~EW~~Q~~~I~p~~MPlT~La~tAiD~~~~~r   86 (239)
T 2r31_A            7 WKARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPNAMPLTRSANSAIEKVAPQF   86 (239)
T ss_dssp             HHTBCCCSCEEEEEETTEEEEEETTEECBCTTSCBCCBSCHHHHHHHHHHHHTCCSBCCGGGCHHHHHHHHHHHTTGGGH
T ss_pred             cccccceeeceEEecCCceEEEeCCCCCCCCCCCeeecCcHHHHHHHHHHHHHhhccCccCCCcHHHHHHHHHccCcccH
Confidence            34799999999999999999999999999999999999999999999999999999999999999               


Q ss_pred             -------------------------------------------ccCceeeeecCCCCCCCCHHHHHHHHHHHhcCChhhh
Q psy998          258 -------------------------------------------RYNTSISYSNDIAGPSVDPKDRATIQRHFLSYNFETV  294 (380)
Q Consensus       258 -------------------------------------------~~gv~l~~~~gi~~~~q~~~~~~~l~~~l~~l~~~~L  294 (380)
                                                                 +||++|.+++||++++||++++++++++|.+||+|+|
T Consensus        87 ~~v~~~ll~y~~tD~l~yra~~p~~L~~~Q~~~wdPll~w~~~~~g~~l~~~~gi~~~~Q~~~~~~~~~~~l~~l~~~~L  166 (239)
T 2r31_A           87 DAVAAMLGDYGGTDLLSYRADAPEALVRAQAEGWDPLIDWAATELRAPLRITHGVIPVPQDPVVLLKLRAEVASLDPFGL  166 (239)
T ss_dssp             HHHHHHHHHGGGSCGGGEECCCCHHHHHHHHHHHHHHHHHHHHHSSCCCCCEETTCCCCCCHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHhcCCCeEEEecCCcHHHHHHHHHHhHHHHHHHHHHcCCceeeecCccCCCCCHHHHHHHHHHHHcCCHHHH
Confidence                                                       7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHhhhhHHHhhhhhcCcCCCcCHhHHHHHHHHHHHHHHHHhcc
Q psy998          295 MGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNT  367 (380)
Q Consensus       295 ~al~~~~~~~kS~vlalal~~g~l~~e~A~~~a~lEe~~Q~~~WG~VE~~HD~e~~~~~~~l~aa~lf~~l~~  367 (380)
                      +||+.+|.++||+|||+|+++|++++|+||++|||||+||+++||+|||+||+++++ +++++||++|+++++
T Consensus       167 aal~~~~~~~kS~ilalal~~g~~~~e~a~~~a~lEe~~Q~e~WG~ve~ahd~~~~~-~~~l~aa~l~~~l~~  238 (239)
T 2r31_A          167 TALHDLVTLPGSLILGLAVIRGRIDAPTAHALSRIDEEFQAERWGRDEEAEAQAASR-LAAMRDSERFWHLTR  238 (239)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHTTSSCHHHHHHHHTHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHhhhhHHHHHHHHCCCchHhHHHHHH-HHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999 999999999999875
>2r6i_A AGR_C_2717P, uncharacterized protein ATU1473; chaperone, structural genomics, APC6123, PSI-2, protein STRU initiative; 2.59A {Agrobacterium tumefaciens str} SCOP: d.381.1.1 Back     alignment and structure
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_J Back     alignment and structure
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J* Back     alignment and structure
>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ... Back     alignment and structure
>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J Back     alignment and structure
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 380
d2r31a1233 d.381.1.1 (A:6-238) ATP12 ATPase {Paracoccus denit 1e-39
d2r6ia1261 d.381.1.1 (A:1-261) Uncharacterized protein Atu147 1e-35
d2uubj198 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus 3e-19
d2qalj198 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escheri 1e-16
>d2r31a1 d.381.1.1 (A:6-238) ATP12 ATPase {Paracoccus denitrificans [TaxId: 266]} Length = 233 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP12-like
superfamily: ATP12-like
family: ATP12-like
domain: ATP12 ATPase
species: Paracoccus denitrificans [TaxId: 266]

 Score =  138 bits (349), Expect = 1e-39
 Identities = 54/229 (23%), Positives = 79/229 (34%), Gaps = 62/229 (27%)

Query: 194 KPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 253
           K +RF+  VGI +  G + + LD R L+TP     ++ +E LALAIA EW A  E I  +
Sbjct: 3   KARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPN 62

Query: 254 TMHLRYNTSISYSNDIAGPSVD---------------------PKDRATIQ--------- 283
            M      S + + +   P  D                     P+     Q         
Sbjct: 63  AMP--LTRSANSAIEKVAPQFDAVAAMLGDYGGTDLLSYRADAPEALVRAQAEGWDPLID 120

Query: 284 --RHFLSYNFETVMGV----------------------------NFAVETLKSIVLTLAC 313
                L        GV                            +  V    S++L LA 
Sbjct: 121 WAATELRAPLRITHGVIPVPQDPVVLLKLRAEVASLDPFGLTALHDLVTLPGSLILGLAV 180

Query: 314 IDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFY 362
           I  ++    A  LS+++EE+Q   WGR E A       L A   +  F+
Sbjct: 181 IRGRIDAPTAHALSRIDEEFQAERWGRDEEAEAQAASRLAAMRDSERFW 229
>d2r6ia1 d.381.1.1 (A:1-261) Uncharacterized protein Atu1473 {Agrobacterium tumefaciens [TaxId: 358]} Length = 261 Back     information, alignment and structure
>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus thermophilus [TaxId: 274]} Length = 98 Back     information, alignment and structure
>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia coli [TaxId: 562]} Length = 98 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
d2r31a1233 ATP12 ATPase {Paracoccus denitrificans [TaxId: 266 100.0
d2r6ia1261 Uncharacterized protein Atu1473 {Agrobacterium tum 100.0
d2qalj198 Ribosomal protein S10 {Escherichia coli [TaxId: 56 99.96
d2uubj198 Ribosomal protein S10 {Thermus thermophilus [TaxId 99.95
>d2r31a1 d.381.1.1 (A:6-238) ATP12 ATPase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP12-like
superfamily: ATP12-like
family: ATP12-like
domain: ATP12 ATPase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=4.4e-53  Score=397.16  Aligned_cols=171  Identities=28%  Similarity=0.445  Sum_probs=166.7

Q ss_pred             CCccceeeeeEEeCCcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhcccccCCCcccc-----------------
Q psy998          195 PKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHL-----------------  257 (380)
Q Consensus       195 ~kRFyk~v~v~~~~gg~~V~LDgR~lkTP~~~~l~vPs~~LA~aiA~EW~~Q~e~I~p~~MPL-----------------  257 (380)
                      +|||||+|+|.+.+|||+|+||||+||||+|++|.||++.||.+||.||++|++.|+|++|||                 
T Consensus         4 ~KRFyk~v~v~~~~~~~~V~LD~r~lkTP~~~~L~vps~~LA~~ia~EW~~q~~~i~p~~mplt~L~~~aiD~~~~~r~~   83 (233)
T d2r31a1           4 ARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPNAMPLTRSANSAIEKVAPQFDA   83 (233)
T ss_dssp             TBCCCSCEEEEEETTEEEEEETTEECBCTTSCBCCBSCHHHHHHHHHHHHTCCSBCCGGGCHHHHHHHHHHHTTGGGHHH
T ss_pred             cccccccceEEEeCCcEEEEECCccccCCCCCeeecCcHHHHHHHHHHHHhhhcccCcccChHHHHHHHHhhccchhHHH
Confidence            699999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             -----------------------------------------ccCceeeeecCCCCCCCCHHHHHHHHHHHhcCChhhhHH
Q psy998          258 -----------------------------------------RYNTSISYSNDIAGPSVDPKDRATIQRHFLSYNFETVMG  296 (380)
Q Consensus       258 -----------------------------------------~~gv~l~~~~gi~~~~q~~~~~~~l~~~l~~l~~~~L~a  296 (380)
                                                               +||+++.+++||++++||+++++++++||.+||+|+|+|
T Consensus        84 ~~~~i~~y~~tD~l~yra~~p~~L~~~Q~~~w~Pil~w~~~~~~~~l~~~~gi~~~~Q~~~~~~~i~~~l~~l~~~~L~a  163 (233)
T d2r31a1          84 VAAMLGDYGGTDLLSYRADAPEALVRAQAEGWDPLIDWAATELRAPLRITHGVIPVPQDPVVLLKLRAEVASLDPFGLTA  163 (233)
T ss_dssp             HHHHHHHGGGSCGGGEECCCCHHHHHHHHHHHHHHHHHHHHHSSCCCCCEETTCCCCCCHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHccCCeEEecCCCChHHHHHHHHHhHHHHHHHHHHhCCCccccCCCCCCCCCHHHHHHHHHHHHhCChHHHHH
Confidence                                                     799999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHcCCCCHHHHHHHhhhhHHHhhhhhcCcCCCcCHhHHHHHHHHHHHHHHHHhc
Q psy998          297 VNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVN  366 (380)
Q Consensus       297 l~~~~~~~kS~vlalal~~g~l~~e~A~~~a~lEe~~Q~~~WG~VE~~HD~e~~~~~~~l~aa~lf~~l~  366 (380)
                      |+.+|.++||+|||+|+++|++++++|+++|+|||+||+++||+||++|| +++..+..+.+|+.|++|.
T Consensus       164 l~~~~~~~kS~il~lal~~~~i~~~~a~~ls~lEE~~Q~e~WG~veea~~-~~~~~~~~~~~a~~F~~Ll  232 (233)
T d2r31a1         164 LHDLVTLPGSLILGLAVIRGRIDAPTAHALSRIDEEFQAERWGRDEEAEA-QAASRLAAMRDSERFWHLT  232 (233)
T ss_dssp             HHHHHHTTTCHHHHHHHHTTSSCHHHHHHHHTHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhHHHHHHHHHCCCCHHHHHHHHhhHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999 5577888999999999885
>d2r6ia1 d.381.1.1 (A:1-261) Uncharacterized protein Atu1473 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure