Psyllid ID: psy9998

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFLSLY
Secondary Structure (PSIPRED)
cccccccccEEEEEEEccccccEEEEEEcccccEEEEEEEEcccEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEcccccEEEEEEEEEcccccccEEccEEEEEEEcccccccEEEEcccEEcccccEEEEEEEEEEEEEEcccccccccEEEEEEEEEEEcccccccccccEEEEEEEEEEEEcHHHHcEEEEcEEccccEEEEEEEEEEccccccccccEEEEEEccEEEEEEEEEccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEcccEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEcccccccEEEEEcccccEEEEEEEEcccEEEEEEEEEEcccccEEEEccEEEEEEEEEEEEEcccccEEEEEEEEEccccccEEEEEEEcccEEEEEEEEEcccccEEEEEcccEEEcccEEEEEEEEccccccccEEEEEEEEccccccccHHHccccEEEEEEEEEEEEEcccccEEcccEEcccHHHHccEEEEEccccccccccEEEEEEccccEEEEEEEcccccccHcHEEEEEEEEEEEEEEEEEEEEEEEEHcccccHHEEccc
Coil and Loop (DISEMBL)
msffgfgqsadieikldgtdtrkladiksddgkkerfylyydgesvtgQVNIVLKKHgsklehqgikIEFIGQIElyydrgnhHEFVSLVKELarpgeliqnttyKFEFlnvekpyesytgsnvftprpnvfnenetIAKYeimdgapvrgesipirvflagydlaptmrdiNKKFSVKYFLNLVLMDEEDRRYFkqqvftpnLIKELDIIVHTlssypemnspikmevGIEDCLHIEFeynkcntwnlkdvIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFLSLY
Flexible Loop (DISEMBL)
msffgfgqsadieikldgtdtrkladiksddgkkeRFYLYydgesvtgQVNIVLKKHgsklehqgIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYEsytgsnvftprpnVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEiaiikrettgtgiflsly
Low Complexity Region (SEG)
MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFLSLY
Disordered region (IsUnstruct)
**********************************ERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFLS**
Disordered Region (DISOPRED)
MSFFGFGQSADIEIKLDGTDT***************FYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVH**************EVGIEDCLHIEFEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFLSLY
Disordered Region (DISEMBL)
MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFLSLY
Disordered Region (DISPRO)
*SFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFLSLY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFLSLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q4G0F5	336	Vacuolar protein sorting-	yes	N/A	0.756	0.648	0.546	9e-78
Q5R436	336	Vacuolar protein sorting-	yes	N/A	0.756	0.648	0.546	1e-77
Q8C0E2	336	Vacuolar protein sorting-	yes	N/A	0.756	0.648	0.546	2e-77
Q68F29	337	Vacuolar protein sorting-	N/A	N/A	0.756	0.646	0.539	5e-77
Q6DH23	329	Vacuolar protein sorting-	yes	N/A	0.756	0.662	0.546	1e-76
Q5BKM4	337	Vacuolar protein sorting-	yes	N/A	0.756	0.646	0.535	2e-76
Q7ZV03	331	Vacuolar protein sorting-	no	N/A	0.756	0.658	0.542	3e-76
Q6DFB9	337	Vacuolar protein sorting-	N/A	N/A	0.756	0.646	0.535	1e-75
Q9W552	478	Vacuolar protein sorting-	yes	N/A	0.753	0.453	0.539	3e-74
O01258	356	Vacuolar protein sorting-	no	N/A	0.75	0.606	0.5	2e-68

>sp|Q4G0F5|VP26B_HUMAN Vacuolar protein sorting-associated protein 26B OS=Homo sapiens GN=VPS26B PE=1 SV=2

 Score =  290 bits (742), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 154/282 (54%), Positives = 191/282 (67%), Gaps = 64/282 (22%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           MSFFGFGQS ++EI L+  ++RK A+ K++DGKKE+++L+YDGE+V+G+V++ LK    +
Sbjct: 1   MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLALKNPNKR 60

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQGIKIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+  + FEF +VEKPYESYT
Sbjct: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYT 120

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
                                         G+++ +R FL     A   R +N       
Sbjct: 121 ------------------------------GQNVKLRYFLR----ATISRRLN------- 139

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
                                 +++KE+DI+VHTLS+YPE+NS IKMEVGIEDCLHIEFE
Sbjct: 140 ----------------------DVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFE 177

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++LKDVIVGKIYFLLVRIKIKHMEI IIKRETTGTG
Sbjct: 178 YNKSK-YHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTG 218

Probable component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network.
Homo sapiens (taxid: 9606)

>sp|Q5R436|VP26B_PONAB Vacuolar protein sorting-associated protein 26B OS=Pongo abelii GN=VPS26B PE=2 SV=1

 Score =  289 bits (740), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 154/282 (54%), Positives = 190/282 (67%), Gaps = 64/282 (22%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           MSFFGFGQS ++EI L+  ++RK A+ K++DGKKE+++L+YDGE+V+G+V + LK    +
Sbjct: 1   MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVGLALKNPNKR 60

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQGIKIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+  + FEF +VEKPYESYT
Sbjct: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYT 120

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
                                         G+++ +R FL     A   R +N       
Sbjct: 121 ------------------------------GQNVKLRYFLR----ATISRRLN------- 139

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
                                 +++KE+DI+VHTLS+YPE+NS IKMEVGIEDCLHIEFE
Sbjct: 140 ----------------------DVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFE 177

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++LKDVIVGKIYFLLVRIKIKHMEI IIKRETTGTG
Sbjct: 178 YNKSK-YHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTG 218

Probable component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network.

Pongo abelii (taxid: 9601)

>sp|Q8C0E2|VP26B_MOUSE Vacuolar protein sorting-associated protein 26B OS=Mus musculus GN=Vps26b PE=1 SV=1

 Score =  289 bits (740), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/282 (54%), Positives = 191/282 (67%), Gaps = 64/282 (22%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           MSFFGFGQS ++EI L+  ++RK A+ K++DGKKE+++L+YDGE+V+G+V++ LK    +
Sbjct: 1   MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKR 60

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQGIKIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+  + FEF +VEKPYESYT
Sbjct: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYT 120

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
                                         G+++ +R FL     A   R +N       
Sbjct: 121 ------------------------------GQNVKLRYFLR----ATISRRLN------- 139

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
                                 +++KE+DI+VHTLS+YPE+NS IKMEVGIEDCLHIEFE
Sbjct: 140 ----------------------DVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFE 177

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++LKDVIVGKIYFLLVRIKIKHMEI IIKRETTGTG
Sbjct: 178 YNKSK-YHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTG 218

Probable component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network.

Mus musculus (taxid: 10090)

>sp|Q68F29|V26BA_XENLA Vacuolar protein sorting-associated protein 26B-A OS=Xenopus laevis GN=vps26b-a PE=2 SV=1

 Score =  287 bits (735), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 152/282 (53%), Positives = 190/282 (67%), Gaps = 64/282 (22%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           MSFFGFG +A+++I L   ++R+ A+ K++DGKKE+++L+YDGE+V+G+V + L+  G +
Sbjct: 1   MSFFGFGPAAELDIALTDGESRRRAEHKTEDGKKEKYFLFYDGETVSGRVTVNLRNPGKR 60

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQG+KIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+ ++ FEF +VEKPYESYT
Sbjct: 61  LEHQGLKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEISQSQSFDFEFTHVEKPYESYT 120

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
           G NV                                                     ++Y
Sbjct: 121 GQNV----------------------------------------------------KLRY 128

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
           FL   L     RR         +++KE+DI+VHTLS+YPE+NS IKMEVGIEDCLHIEFE
Sbjct: 129 FLRATL----SRR-------LNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFE 177

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++LKDVIVGKIYFLLVRIKIKHMEI IIKRETTGTG
Sbjct: 178 YNKSK-YHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTG 218

Probable component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network.

Xenopus laevis (taxid: 8355)

>sp|Q6DH23|V26BL_DANRE Vacuolar protein sorting-associated protein 26B-like OS=Danio rerio GN=vps26bl PE=2 SV=1

 Score =  286 bits (732), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/282 (54%), Positives = 187/282 (66%), Gaps = 64/282 (22%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           MSFF FGQSA+I+I L+  +TRK A+ K++DGKK++++L+YDGE+V+G+VN+ LK  G +
Sbjct: 1   MSFFSFGQSAEIDIVLNDAETRKKAEHKTEDGKKDKYFLFYDGETVSGKVNVTLKTPGKR 60

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQG KIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+ T+ FEF +VEKPYESYT
Sbjct: 61  LEHQGFKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEMAQSQTFDFEFTHVEKPYESYT 120

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
           G NV                               +R FL    ++  + DI K+  +  
Sbjct: 121 GQNV------------------------------KLRYFLRA-TVSRRLNDICKEMDI-- 147

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
                                         +VHTLS+YPE+NS IKMEVGIEDCLHIEFE
Sbjct: 148 ------------------------------VVHTLSTYPELNSSIKMEVGIEDCLHIEFE 177

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++LKDVIVGKIYFLLVRIKIKHMEI IIKRETTGTG
Sbjct: 178 YNKSK-YHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTG 218

Probable component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network.

Danio rerio (taxid: 7955)

>sp|Q5BKM4|VP26B_XENTR Vacuolar protein sorting-associated protein 26B OS=Xenopus tropicalis GN=vps26b PE=2 SV=1

 Score =  285 bits (730), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/282 (53%), Positives = 189/282 (67%), Gaps = 64/282 (22%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           MSFFGFG +A+++I L   ++R+  + K++DGKKE+++L+YDGE+V+G+V + L+  G +
Sbjct: 1   MSFFGFGPAAELDIALTDGESRRRVEHKTEDGKKEKYFLFYDGETVSGRVTVNLRNPGKR 60

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQG+KIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+ ++ FEF +VEKPYESYT
Sbjct: 61  LEHQGLKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEISQSQSFDFEFTHVEKPYESYT 120

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
           G NV                                                     ++Y
Sbjct: 121 GQNV----------------------------------------------------KLRY 128

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
           FL   L     RR         +++KE+DI+VHTLS+YPE+NS IKMEVGIEDCLHIEFE
Sbjct: 129 FLRATL----SRR-------LNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFE 177

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++LKDVIVGKIYFLLVRIKIKHMEI IIKRETTGTG
Sbjct: 178 YNKSK-YHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTG 218

Probable component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network.

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZV03|VP26B_DANRE Vacuolar protein sorting-associated protein 26B OS=Danio rerio GN=vps26b PE=2 SV=1

 Score =  285 bits (728), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 153/282 (54%), Positives = 188/282 (66%), Gaps = 64/282 (22%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           MSFFGFGQ+A+I+I L+  +TRK  + K++DGKK++++L+YDGE+V+G+VN+ LK  G +
Sbjct: 1   MSFFGFGQTAEIDIVLNDAETRKKVEHKTEDGKKDKYFLFYDGETVSGKVNVTLKTPGKR 60

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEH GIKIEF+GQIELYYDRGNHHEFVSLVK+LARPGEL Q+ T+ FEF +VEKPYESYT
Sbjct: 61  LEHYGIKIEFVGQIELYYDRGNHHEFVSLVKDLARPGELSQSQTFDFEFTHVEKPYESYT 120

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
           G NV                               +R FL    ++  + DI+K      
Sbjct: 121 GQNV------------------------------KLRYFLRA-TISRRLNDISK------ 143

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
                                     E+DI+V TL +YPE+NS IKMEVGIEDCLHIEFE
Sbjct: 144 --------------------------EMDIVVQTLCTYPEINSSIKMEVGIEDCLHIEFE 177

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++L+DVIVGKIYFLLVRIKIKHMEI IIKRETTGTG
Sbjct: 178 YNKSK-YHLRDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTG 218

Probable component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network.

Danio rerio (taxid: 7955)

>sp|Q6DFB9|V26BB_XENLA Vacuolar protein sorting-associated protein 26B-B OS=Xenopus laevis GN=vps26b-b PE=2 SV=1

 Score =  283 bits (724), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/282 (53%), Positives = 188/282 (66%), Gaps = 64/282 (22%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           MSFFGFG +A+++I L   ++R+  + K++DGKKE+++L+YDGE+V+G+V + L+  G +
Sbjct: 1   MSFFGFGPAAELDIALTDGESRRRVEHKTEDGKKEKYFLFYDGETVSGRVTVSLRNPGKR 60

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQG+KIEFIGQIELYYDRGNHHEFVSLVK+LARPGEL Q+ ++ FEF +VEKPYESYT
Sbjct: 61  LEHQGLKIEFIGQIELYYDRGNHHEFVSLVKDLARPGELSQSQSFDFEFTHVEKPYESYT 120

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
           G NV                                                     ++Y
Sbjct: 121 GQNV----------------------------------------------------KLRY 128

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
           FL   L     RR         ++ KE+DI+V+TLS+YPE+NS IKMEVGIEDCLHIEFE
Sbjct: 129 FLRATL----SRR-------LNDVAKEMDIVVYTLSTYPELNSSIKMEVGIEDCLHIEFE 177

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++LKDVIVGKIYFLLVRIKIKHMEI IIKRETTGTG
Sbjct: 178 YNKSK-YHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTG 218

Probable component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network.

Xenopus laevis (taxid: 8355)

>sp|Q9W552|VPS26_DROME Vacuolar protein sorting-associated protein 26 OS=Drosophila melanogaster GN=Vps26 PE=2 SV=1

 Score =  278 bits (711), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 152/282 (53%), Positives = 182/282 (64%), Gaps = 65/282 (23%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           M+F GFGQSADIEI  DG +  K A++K +DGK E+  L+YDGE+V+G+VN+ LKK GSK
Sbjct: 1   MNFLGFGQSADIEIVFDGAE-HKTAEVKGEDGKVEKMLLFYDGETVSGKVNVTLKKPGSK 59

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQGIKIEFIGQIELYYDRGNHHEF  L K LARPG+LIQN +Y F+F  VEK +E Y 
Sbjct: 60  LEHQGIKIEFIGQIELYYDRGNHHEFKCLAKALARPGDLIQNNSYPFDFPKVEKQFEVYA 119

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
                                    G+ VR                           ++Y
Sbjct: 120 -------------------------GSNVR---------------------------LRY 127

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
           FL   ++    RR         ++ KE+DI VHTL SYPEMN+PIKMEVGIEDCLHIEFE
Sbjct: 128 FLRATIV----RRIS-------DITKEVDIAVHTLCSYPEMNNPIKMEVGIEDCLHIEFE 176

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++L+D I+GKIYFLLVRIKIKHMEIAIIK+E+TGTG
Sbjct: 177 YNKSK-YHLRDTIIGKIYFLLVRIKIKHMEIAIIKKESTGTG 217

Component of the retromer complex which acts in conjunction with wingless (wg) and clathrin-mediated endocytosis to sustain a wntless (wls) traffic loop. This loop encompasses the Golgi, the cell surface, an endocytic compartment and a retrograde route leading back to the Golgi, thereby enabling wls to direct wg secretion. The hh and dpp signaling pathways do not require the retromer complex suggesting that it does not play a general role in exocytosis.

Drosophila melanogaster (taxid: 7227)

>sp|O01258|VPS26_CAEEL Vacuolar protein sorting-associated protein 26 OS=Caenorhabditis elegans GN=vps-26 PE=2 SV=2

 Score =  259 bits (661), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/280 (50%), Positives = 174/280 (62%), Gaps = 64/280 (22%)

Query: 3   FFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLE 62
            FGFGQSA+I+I+L   DTRK+   + DDG     +LYYDGESVTG V++ LKK   K E
Sbjct: 4   LFGFGQSAEIQIRLSNEDTRKIVKARGDDGNMHDHFLYYDGESVTGTVHVNLKKANHKFE 63

Query: 63  HQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGS 122
           HQGI+IEFIGQIE+YYDRGN  +F+SL +ELARPG+L QN  + FEF NVEKP+E+Y G+
Sbjct: 64  HQGIRIEFIGQIEVYYDRGNQQDFISLTRELARPGDLTQNAQFPFEFNNVEKPFETYMGT 123

Query: 123 NVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFL 182
           NV                                                     ++YFL
Sbjct: 124 NV----------------------------------------------------KLRYFL 131

Query: 183 NLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYN 242
            + ++    RR         +L KELD++VH LSSYP+ +  IKMEVGIEDCLHIEFEYN
Sbjct: 132 RVTVI----RRL-------TDLTKELDLVVHALSSYPDNDKSIKMEVGIEDCLHIEFEYN 180

Query: 243 KCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           K N ++L+DVIVGKIYFLLVRIKIK+MEIAI+K E  G+G
Sbjct: 181 K-NKYHLQDVIVGKIYFLLVRIKIKYMEIAILKTEVVGSG 219

May play a role in vesicular protein sorting, similar to the yeast retromer proteins.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
346469421	325	hypothetical protein [Amblyomma maculatu	0.756	0.670	0.613	1e-86
325303772	232	TPA_inf: vacuolar protein sorting-associ	0.756	0.939	0.613	2e-86
340716613	376	PREDICTED: vacuolar protein sorting-asso	0.753	0.577	0.606	1e-85
383860329	393	PREDICTED: vacuolar protein sorting-asso	0.753	0.552	0.602	5e-85
345486557	247	PREDICTED: vacuolar protein sorting-asso	0.753	0.878	0.606	6e-85
307181775	382	Vacuolar protein sorting-associated prot	0.75	0.565	0.604	2e-84
242002412	315	H(beta)58 protein, putative [Ixodes scap	0.756	0.692	0.599	2e-84
332018894	385	Vacuolar protein sorting-associated prot	0.75	0.561	0.601	8e-84
322802258	375	hypothetical protein SINV_02964 [Solenop	0.75	0.576	0.604	8e-84
307192295	384	Vacuolar protein sorting-associated prot	0.75	0.562	0.601	1e-83

>gi|346469421|gb|AEO34555.1| hypothetical protein [Amblyomma maculatum]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 173/282 (61%), Positives = 200/282 (70%), Gaps = 64/282 (22%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           M+FFG GQSADI+I L+GT+ RK+A+IK++DGKKE+  LYYDGESV+G+VNI LKK GSK
Sbjct: 1   MAFFGLGQSADIDIILNGTENRKMAEIKTEDGKKEKHLLYYDGESVSGKVNITLKKPGSK 60

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQGIKIEFIGQIELYYDRGNHHEF SLVKELARPGEL+QN +Y FEF+NVEKPYESYT
Sbjct: 61  LEHQGIKIEFIGQIELYYDRGNHHEFASLVKELARPGELVQNASYSFEFVNVEKPYESYT 120

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
           GSNV                                                     ++Y
Sbjct: 121 GSNV----------------------------------------------------RLRY 128

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
           FL + ++    RR         +L+KELD++VHTLSSYPE+NS IKMEVGIEDCLHIEFE
Sbjct: 129 FLRVTIV----RR-------LTDLVKELDMVVHTLSSYPEINSSIKMEVGIEDCLHIEFE 177

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++LKDVIVGKIYFLLVRIKIKHMEIAIIKRETTG+G
Sbjct: 178 YNKSK-YHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGSG 218

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325303772|tpg|DAA34394.1| TPA_inf: vacuolar protein sorting-associated protein 26 [Amblyomma variegatum]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/282 (61%), Positives = 200/282 (70%), Gaps = 64/282 (22%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           M+FFG GQSADI+I L+GT+ RK+A+IK++DGKKE+  LYYDGESV+G+VNI LKK GSK
Sbjct: 1   MAFFGLGQSADIDIILNGTENRKMAEIKTEDGKKEKHLLYYDGESVSGKVNITLKKPGSK 60

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQGIKIEFIGQIELYYDRGNHHEF SLVKELARPGEL+QN +Y FEF+NVEKPYESYT
Sbjct: 61  LEHQGIKIEFIGQIELYYDRGNHHEFASLVKELARPGELVQNASYSFEFVNVEKPYESYT 120

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
           GSNV                                                     ++Y
Sbjct: 121 GSNV----------------------------------------------------RLRY 128

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
           FL + ++    RR         +L+KELD++VHTLSSYPE+NS IKMEVGIEDCLHIEFE
Sbjct: 129 FLRVTIV----RR-------LTDLVKELDMVVHTLSSYPEINSSIKMEVGIEDCLHIEFE 177

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++LKDVIVGKIYFLLVRIKIKHMEIAIIKRETTG+G
Sbjct: 178 YNKSK-YHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGSG 218

Source: Amblyomma variegatum

Species: Amblyomma variegatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716613|ref|XP_003396791.1| PREDICTED: vacuolar protein sorting-associated protein 26-like [Bombus terrestris] gi|350404273|ref|XP_003487056.1| PREDICTED: vacuolar protein sorting-associated protein 26-like [Bombus impatiens]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 171/282 (60%), Positives = 197/282 (69%), Gaps = 65/282 (23%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           MSFFGFGQSADIEI LDG +TRK ADIKS+DGKKER  LYYDGE+V+G++NI L+K G K
Sbjct: 1   MSFFGFGQSADIEITLDGAETRKTADIKSEDGKKERHLLYYDGETVSGKINISLRKAG-K 59

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQG+K+EFIGQIELYYDRGNHHEF SLVKELARPGEL  NT Y FEF NVEKP+ESYT
Sbjct: 60  LEHQGVKVEFIGQIELYYDRGNHHEFTSLVKELARPGELTHNTVYTFEFANVEKPFESYT 119

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
           GSNV                                                     ++Y
Sbjct: 120 GSNV----------------------------------------------------RLRY 127

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
           FL + ++    RR         +++KEL+++VHTLSSYP+MN+PIKMEVGIEDCLHIEFE
Sbjct: 128 FLKVTIV----RRL-------SDIVKELELVVHTLSSYPDMNNPIKMEVGIEDCLHIEFE 176

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++LKDVIVGKIYFLLVRIKIKHMEIAIIKRETTG+G
Sbjct: 177 YNKSK-YHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGSG 217

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860329|ref|XP_003705643.1| PREDICTED: vacuolar protein sorting-associated protein 26-like [Megachile rotundata]

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 170/282 (60%), Positives = 197/282 (69%), Gaps = 65/282 (23%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           MSFFGFGQSADIEI LDG +TRK ADIKS+DGKKER  LYYDGE+V+G++NI L+K G K
Sbjct: 18  MSFFGFGQSADIEITLDGAETRKTADIKSEDGKKERHLLYYDGETVSGKINISLRKAG-K 76

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQG+K+EFIGQIELYYDRGNHHEF +LVKELARPGEL  NT Y FEF NVEKP+ESYT
Sbjct: 77  LEHQGVKVEFIGQIELYYDRGNHHEFTNLVKELARPGELTHNTVYTFEFANVEKPFESYT 136

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
           GSNV                                                     ++Y
Sbjct: 137 GSNV----------------------------------------------------RLRY 144

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
           FL + ++    RR         +++KEL+++VHTLSSYP+MN+PIKMEVGIEDCLHIEFE
Sbjct: 145 FLKVTIV----RRL-------SDIVKELELVVHTLSSYPDMNNPIKMEVGIEDCLHIEFE 193

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++LKDVIVGKIYFLLVRIKIKHMEIAIIKRETTG+G
Sbjct: 194 YNKSK-YHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGSG 234

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486557|ref|XP_001604963.2| PREDICTED: vacuolar protein sorting-associated protein 26-like, partial [Nasonia vitripennis]

 Score =  320 bits (819), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 171/282 (60%), Positives = 198/282 (70%), Gaps = 65/282 (23%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           MSFFGFGQSADIEI LDG +TRK ADIKS+DGKKER  LY DGE+V+G++NI L+K G K
Sbjct: 1   MSFFGFGQSADIEITLDGAETRKTADIKSEDGKKERHLLYLDGETVSGKINISLRKAG-K 59

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQG+K+EFIGQIELYYDRGNHHEF SLVKELARPGEL  NTTY+FEF NVEKP+ESYT
Sbjct: 60  LEHQGVKVEFIGQIELYYDRGNHHEFTSLVKELARPGELTHNTTYEFEFANVEKPFESYT 119

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
           GSNV                                                     ++Y
Sbjct: 120 GSNV----------------------------------------------------RLRY 127

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
           FL + ++    RR         +++KEL+++VHTLSSYP+MN+PIKMEVGIEDCLHIEFE
Sbjct: 128 FLRVTIV----RRL-------SDIVKELELVVHTLSSYPDMNNPIKMEVGIEDCLHIEFE 176

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++LKDVIVGKIYFLLVRIKIKHMEIAIIKRETTG+G
Sbjct: 177 YNKSK-YHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGSG 217

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181775|gb|EFN69227.1| Vacuolar protein sorting-associated protein 26 [Camponotus floridanus]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 170/281 (60%), Positives = 196/281 (69%), Gaps = 65/281 (23%)

Query: 2   SFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKL 61
           SFFGFGQSADIEI LDG +TRK ADIKS+DGKKER  LYYDGE+V+G++NI L+K G KL
Sbjct: 10  SFFGFGQSADIEITLDGAETRKTADIKSEDGKKERHLLYYDGETVSGKINISLRKAG-KL 68

Query: 62  EHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTG 121
           EHQG+K+EFIGQIELYYDRGNHHEF SLVKELARPGEL  NT Y FEF NVEKP+ESYTG
Sbjct: 69  EHQGVKVEFIGQIELYYDRGNHHEFTSLVKELARPGELTHNTVYTFEFPNVEKPFESYTG 128

Query: 122 SNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYF 181
           SNV                                                     ++YF
Sbjct: 129 SNV----------------------------------------------------RLRYF 136

Query: 182 LNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEY 241
           L + ++    RR         +++KEL+++VHTLSSYP+MN+PIKMEVGIEDCLHIEFEY
Sbjct: 137 LKVTIV----RRL-------SDIVKELELVVHTLSSYPDMNNPIKMEVGIEDCLHIEFEY 185

Query: 242 NKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           NK   ++LKDVIVGKIYFLLVRIKIKHMEIAIIKRETTG+G
Sbjct: 186 NKSK-YHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGSG 225

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242002412|ref|XP_002435849.1| H(beta)58 protein, putative [Ixodes scapularis] gi|215499185|gb|EEC08679.1| H(beta)58 protein, putative [Ixodes scapularis]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 169/282 (59%), Positives = 198/282 (70%), Gaps = 64/282 (22%)

Query: 1   MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
           M+FFG GQSADI+I L GT+ RK+A++K++DGKKE+  L+YDGESV+G+VN+ LKK GSK
Sbjct: 1   MAFFGLGQSADIDIILSGTENRKMAEMKTEDGKKEKHLLFYDGESVSGKVNVTLKKPGSK 60

Query: 61  LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
           LEHQGIKIEFIGQIELYYDRGNHHEF SLVKELARPGEL QN +Y FEF+NVEKPYESYT
Sbjct: 61  LEHQGIKIEFIGQIELYYDRGNHHEFASLVKELARPGELTQNASYSFEFVNVEKPYESYT 120

Query: 121 GSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180
           GSNV                                                     ++Y
Sbjct: 121 GSNV----------------------------------------------------RLRY 128

Query: 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFE 240
           FL + L+    RR         +L+KE++++VHTLSSYPE+NS IKMEVGIEDCLHIEFE
Sbjct: 129 FLRVTLV----RR-------LTDLVKEMEMVVHTLSSYPEINSSIKMEVGIEDCLHIEFE 177

Query: 241 YNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           YNK   ++LKDVIVGKIYFLLVRIKIKHMEIAIIKRETTG+G
Sbjct: 178 YNKSK-YHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGSG 218

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018894|gb|EGI59440.1| Vacuolar protein sorting-associated protein 26 [Acromyrmex echinatior]

 Score =  316 bits (809), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 169/281 (60%), Positives = 195/281 (69%), Gaps = 65/281 (23%)

Query: 2   SFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKL 61
           SFFGFGQSADIEI LDG +TRK ADIKS+DGKKER  LYYDGE+V+G++NI L+K G KL
Sbjct: 13  SFFGFGQSADIEITLDGAETRKTADIKSEDGKKERHLLYYDGETVSGKINISLRKAG-KL 71

Query: 62  EHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTG 121
           EH G+K+EFIGQIELYYDRGNHHEF SLVKELARPGEL  NT Y FEF NVEKP+ESYTG
Sbjct: 72  EHHGVKVEFIGQIELYYDRGNHHEFTSLVKELARPGELTHNTVYTFEFPNVEKPFESYTG 131

Query: 122 SNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYF 181
           SNV                                                     ++YF
Sbjct: 132 SNV----------------------------------------------------RLRYF 139

Query: 182 LNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEY 241
           L + ++    RR         +++KEL+++VHTLSSYP+MN+PIKMEVGIEDCLHIEFEY
Sbjct: 140 LKVTIV----RR-------ISDIVKELELVVHTLSSYPDMNNPIKMEVGIEDCLHIEFEY 188

Query: 242 NKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           NK   ++LKDVIVGKIYFLLVRIKIKHMEIAIIKRETTG+G
Sbjct: 189 NKSK-YHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGSG 228

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802258|gb|EFZ22654.1| hypothetical protein SINV_02964 [Solenopsis invicta]

 Score =  316 bits (809), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 170/281 (60%), Positives = 195/281 (69%), Gaps = 65/281 (23%)

Query: 2   SFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKL 61
           SFFGFGQSADIEI LDG +TRK ADIKS+DGKKER  LYYDGE+V+G++NI L+K G KL
Sbjct: 3   SFFGFGQSADIEITLDGAETRKTADIKSEDGKKERHLLYYDGETVSGKINISLRKAG-KL 61

Query: 62  EHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTG 121
           EH G+K+EFIGQIELYYDRGNHHEF SLVKELARPGEL  NT Y FEF NVEKP+ESYTG
Sbjct: 62  EHHGVKVEFIGQIELYYDRGNHHEFTSLVKELARPGELTHNTVYTFEFPNVEKPFESYTG 121

Query: 122 SNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYF 181
           SNV                                                     ++YF
Sbjct: 122 SNV----------------------------------------------------RLRYF 129

Query: 182 LNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEY 241
           L + ++    RR         ++IKEL+++VHTLSSYP+MN+PIKMEVGIEDCLHIEFEY
Sbjct: 130 LKVTIV----RR-------ISDVIKELELVVHTLSSYPDMNNPIKMEVGIEDCLHIEFEY 178

Query: 242 NKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           NK   ++LKDVIVGKIYFLLVRIKIKHMEIAIIKRETTG+G
Sbjct: 179 NKSK-YHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGSG 218

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192295|gb|EFN75577.1| Vacuolar protein sorting-associated protein 26 [Harpegnathos saltator]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 169/281 (60%), Positives = 196/281 (69%), Gaps = 65/281 (23%)

Query: 2   SFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKL 61
           SFFGFGQSADIEI LDG +TRK ADIKS+DGKKER  LYYDGE+V+G++NI L+K G KL
Sbjct: 11  SFFGFGQSADIEITLDGAETRKTADIKSEDGKKERHLLYYDGETVSGKINISLRKAG-KL 69

Query: 62  EHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTG 121
           EHQG+K+EFIGQIELYYDRGNHHEF SLVKELARPGEL  NT + FEF NVEKP+ESYTG
Sbjct: 70  EHQGVKVEFIGQIELYYDRGNHHEFTSLVKELARPGELTHNTIHTFEFPNVEKPFESYTG 129

Query: 122 SNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYF 181
           SNV                                                     ++YF
Sbjct: 130 SNV----------------------------------------------------RLRYF 137

Query: 182 LNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEY 241
           L + ++    RR         +++KEL+++VHTLSSYP+MN+PIKMEVGIEDCLHIEFEY
Sbjct: 138 LKVTIV----RRL-------SDIVKELELVVHTLSSYPDMNNPIKMEVGIEDCLHIEFEY 186

Query: 242 NKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           NK   ++LKDVIVGKIYFLLVRIKIKHMEIAIIKRETTG+G
Sbjct: 187 NKSK-YHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGSG 226

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
ZFIN|ZDB-GENE-040718-112	329	vps26bl "vacuolar protein sort	0.430	0.376	0.693	9.5e-80
UNIPROTKB|Q4G0F5	336	VPS26B "Vacuolar protein sorti	0.430	0.369	0.677	2.5e-79
MGI|MGI:1917656	336	Vps26b "vacuolar protein sorti	0.430	0.369	0.677	4.1e-79
ZFIN|ZDB-GENE-040426-2699	331	vps26b "vacuolar protein sorti	0.430	0.374	0.685	4.6e-78
UNIPROTKB|E1BMM4	336	VPS26B "Uncharacterized protei	0.430	0.369	0.637	3.2e-77
UNIPROTKB|F1NPH4	341	VPS26B "Uncharacterized protei	0.430	0.363	0.645	4.1e-77
FB|FBgn0014411	478	Vps26 "Vacuolar protein sortin	0.427	0.257	0.685	5.9e-76
WB|WBGene00006931	356	vps-26 [Caenorhabditis elegans	0.420	0.339	0.628	9.7e-72
UNIPROTKB|J9P516	309	VPS26B "Uncharacterized protei	0.333	0.310	0.708	1.8e-70
UNIPROTKB|O75436	327	VPS26A "Vacuolar protein sorti	0.430	0.379	0.611	2e-69

ZFIN|ZDB-GENE-040718-112 vps26bl "vacuolar protein sorting 26 homolog B, like" [Danio rerio (taxid:7955)]

 Score = 478 (173.3 bits), Expect = 9.5e-80, Sum P(2) = 9.5e-80
 Identities = 86/124 (69%), Positives = 108/124 (87%)

Query:     1 MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
             MSFF FGQSA+I+I L+  +TRK A+ K++DGKK++++L+YDGE+V+G+VN+ LK  G +
Sbjct:     1 MSFFSFGQSAEIDIVLNDAETRKKAEHKTEDGKKDKYFLFYDGETVSGKVNVTLKTPGKR 60

Query:    61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
             LEHQG KIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+ T+ FEF +VEKPYESYT
Sbjct:    61 LEHQGFKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEMAQSQTFDFEFTHVEKPYESYT 120

Query:   121 GSNV 124
             G NV
Sbjct:   121 GQNV 124

GO:0030904 "retromer complex" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|Q4G0F5 VPS26B "Vacuolar protein sorting-associated protein 26B" [Homo sapiens (taxid:9606)]

 Score = 469 (170.2 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
 Identities = 84/124 (67%), Positives = 107/124 (86%)

Query:     1 MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
             MSFFGFGQS ++EI L+  ++RK A+ K++DGKKE+++L+YDGE+V+G+V++ LK    +
Sbjct:     1 MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLALKNPNKR 60

Query:    61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
             LEHQGIKIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+  + FEF +VEKPYESYT
Sbjct:    61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYT 120

Query:   121 GSNV 124
             G NV
Sbjct:   121 GQNV 124

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

MGI|MGI:1917656 Vps26b "vacuolar protein sorting 26 homolog B (yeast)" [Mus musculus (taxid:10090)]

 Score = 467 (169.5 bits), Expect = 4.1e-79, Sum P(2) = 4.1e-79
 Identities = 84/124 (67%), Positives = 107/124 (86%)

Query:     1 MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
             MSFFGFGQS ++EI L+  ++RK A+ K++DGKKE+++L+YDGE+V+G+V++ LK    +
Sbjct:     1 MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKR 60

Query:    61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
             LEHQGIKIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+  + FEF +VEKPYESYT
Sbjct:    61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYT 120

Query:   121 GSNV 124
             G NV
Sbjct:   121 GQNV 124

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

ZFIN|ZDB-GENE-040426-2699 vps26b "vacuolar protein sorting 26 homolog B" [Danio rerio (taxid:7955)]

 Score = 475 (172.3 bits), Expect = 4.6e-78, Sum P(2) = 4.6e-78
 Identities = 85/124 (68%), Positives = 108/124 (87%)

Query:     1 MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
             MSFFGFGQ+A+I+I L+  +TRK  + K++DGKK++++L+YDGE+V+G+VN+ LK  G +
Sbjct:     1 MSFFGFGQTAEIDIVLNDAETRKKVEHKTEDGKKDKYFLFYDGETVSGKVNVTLKTPGKR 60

Query:    61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
             LEH GIKIEF+GQIELYYDRGNHHEFVSLVK+LARPGEL Q+ T+ FEF +VEKPYESYT
Sbjct:    61 LEHYGIKIEFVGQIELYYDRGNHHEFVSLVKDLARPGELSQSQTFDFEFTHVEKPYESYT 120

Query:   121 GSNV 124
             G NV
Sbjct:   121 GQNV 124

GO:0030904 "retromer complex" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1BMM4 VPS26B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 449 (163.1 bits), Expect = 3.2e-77, Sum P(2) = 3.2e-77
 Identities = 79/124 (63%), Positives = 105/124 (84%)

Query:     1 MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
             +SF G GQS D++I L+  D+R+ A+ K++DGKK++++L+YDGE+V+G+V++ LK    +
Sbjct:     1 LSFTGLGQSVDVDILLNDADSRRRAEHKTEDGKKDKYFLFYDGETVSGKVSLALKNPNKR 60

Query:    61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
             LEHQGIK+EFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+  + FEF +VEKPYESYT
Sbjct:    61 LEHQGIKVEFIGQIELYYDRGNHHEFVSLVKDLARPGEVTQSQAFDFEFTHVEKPYESYT 120

Query:   121 GSNV 124
             G NV
Sbjct:   121 GQNV 124

GO:0030904 "retromer complex" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

UNIPROTKB|F1NPH4 VPS26B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 449 (163.1 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
 Identities = 80/124 (64%), Positives = 104/124 (83%)

Query:     1 MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
             MSFFGFGQSA++E+ L   ++R+  + K+++GKKE+++L+YDGE+V+G+V + LK    +
Sbjct:     6 MSFFGFGQSAEVELVLSDAESRRRVEHKTEEGKKEKYFLFYDGETVSGRVILTLKHPNRR 65

Query:    61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
             LEHQGIK+EFIGQIELYYDRGNHHEFVSLVK+LARPGE  Q+  + FEF +VEKPYESYT
Sbjct:    66 LEHQGIKVEFIGQIELYYDRGNHHEFVSLVKDLARPGEFTQSQIFDFEFTHVEKPYESYT 125

Query:   121 GSNV 124
             G NV
Sbjct:   126 GQNV 129

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

FB|FBgn0014411 Vps26 "Vacuolar protein sorting 26" [Drosophila melanogaster (taxid:7227)]

 Score = 450 (163.5 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
 Identities = 85/124 (68%), Positives = 100/124 (80%)

Query:     1 MSFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSK 60
             M+F GFGQSADIEI  DG +  K A++K +DGK E+  L+YDGE+V+G+VN+ LKK GSK
Sbjct:     1 MNFLGFGQSADIEIVFDGAE-HKTAEVKGEDGKVEKMLLFYDGETVSGKVNVTLKKPGSK 59

Query:    61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120
             LEHQGIKIEFIGQIELYYDRGNHHEF  L K LARPG+LIQN +Y F+F  VEK +E Y 
Sbjct:    60 LEHQGIKIEFIGQIELYYDRGNHHEFKCLAKALARPGDLIQNNSYPFDFPKVEKQFEVYA 119

Query:   121 GSNV 124
             GSNV
Sbjct:   120 GSNV 123

GO:0007040 "lysosome organization" evidence=ISS

GO:0006605 "protein targeting" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0030904 "retromer complex" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

WB|WBGene00006931 vps-26 [Caenorhabditis elegans (taxid:6239)]

 Score = 417 (151.9 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
 Identities = 76/121 (62%), Positives = 94/121 (77%)

Query:     4 FGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEH 63
             FGFGQSA+I+I+L   DTRK+   + DDG     +LYYDGESVTG V++ LKK   K EH
Sbjct:     5 FGFGQSAEIQIRLSNEDTRKIVKARGDDGNMHDHFLYYDGESVTGTVHVNLKKANHKFEH 64

Query:    64 QGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSN 123
             QGI+IEFIGQIE+YYDRGN  +F+SL +ELARPG+L QN  + FEF NVEKP+E+Y G+N
Sbjct:    65 QGIRIEFIGQIEVYYDRGNQQDFISLTRELARPGDLTQNAQFPFEFNNVEKPFETYMGTN 124

Query:   124 V 124
             V
Sbjct:   125 V 125

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

UNIPROTKB|J9P516 VPS26B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 385 (140.6 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
 Identities = 68/96 (70%), Positives = 85/96 (88%)

Query:    29 SDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHEFVS 88
             ++DGKKE+++L+YDGE+V+G+V++ LK    +LEHQGIKIEFIGQIELYYDRGNHHEFVS
Sbjct:     2 TEDGKKEKYFLFYDGETVSGKVSLALKNPNKRLEHQGIKIEFIGQIELYYDRGNHHEFVS 61

Query:    89 LVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNV 124
             LVK+LARPGE+ Q+  + FEF +VEKPYESYTG NV
Sbjct:    62 LVKDLARPGEISQSQAFDFEFTHVEKPYESYTGQNV 97

GO:0030904 "retromer complex" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

UNIPROTKB|O75436 VPS26A "Vacuolar protein sorting-associated protein 26A" [Homo sapiens (taxid:9606)]

 Score = 413 (150.4 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
 Identities = 77/126 (61%), Positives = 102/126 (80%)

Query:     1 MSFFG--FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHG 58
             MSF G  FG   +I+I L+  +TRK+A++K++DGK E+ YL+YDGESV+G+VN+  K+ G
Sbjct:     1 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 60

Query:    59 SKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYES 118
              +LEHQGI+IEF+GQIEL+ D+ N HEFV+LVKELA PGEL Q+ +Y FEF+ VEKPYES
Sbjct:    61 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES 120

Query:   119 YTGSNV 124
             Y G+NV
Sbjct:   121 YIGANV 126

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0008565 "protein transporter activity" evidence=NAS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0031982 "vesicle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5BKM4	VP26B_XENTR	No assigned EC number	0.5354	0.7569	0.6468	yes	N/A
Q55CA0	VPS26_DICDI	No assigned EC number	0.4401	0.7604	0.6275	yes	N/A
Q8C0E2	VP26B_MOUSE	No assigned EC number	0.5460	0.7569	0.6488	yes	N/A
Q9T091	VP26B_ARATH	No assigned EC number	0.3489	0.7430	0.7062	yes	N/A
Q5R436	VP26B_PONAB	No assigned EC number	0.5460	0.7569	0.6488	yes	N/A
Q9W552	VPS26_DROME	No assigned EC number	0.5390	0.7534	0.4539	yes	N/A
Q4G0F5	VP26B_HUMAN	No assigned EC number	0.5460	0.7569	0.6488	yes	N/A
Q6DH23	V26BL_DANRE	No assigned EC number	0.5460	0.7569	0.6626	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	288
pfam03643	275	pfam03643, Vps26, Vacuolar protein sorting-associa	6e-92
pfam03643	275	pfam03643, Vps26, Vacuolar protein sorting-associa	2e-33

>gnl|CDD|146336 pfam03643, Vps26, Vacuolar protein sorting-associated protein 26

 Score =  273 bits (700), Expect = 6e-92
 Identities = 141/277 (50%), Positives = 174/277 (62%), Gaps = 65/277 (23%)

Query: 6   FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQG 65
           FG   DIEI LD  +TRK  ++K++DGKKE+  +YYDGESV+G+VNI LK  G K+EHQG
Sbjct: 1   FGPPCDIEIVLDNEETRKTVEVKTEDGKKEKNPVYYDGESVSGKVNIRLKD-GKKVEHQG 59

Query: 66  IKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVF 125
           IKIEF+GQIEL+YDRGN HEF +LV+ELA PGEL Q+ T+ FEF  VEKPYESY      
Sbjct: 60  IKIEFVGQIELFYDRGNPHEFTNLVRELAPPGELTQSKTFPFEFPLVEKPYESYI----- 114

Query: 126 TPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLV 185
                               G  VR                           ++YFL + 
Sbjct: 115 --------------------GVNVR---------------------------LRYFLRVT 127

Query: 186 LMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCN 245
           ++    RR         ++ KE D  VH  ++YPE N+ IKMEVGIEDCLHIEFEYNK +
Sbjct: 128 VV----RRL-------TDITKEKDFWVHNFTTYPETNNSIKMEVGIEDCLHIEFEYNK-S 175

Query: 246 TWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
            ++LKDVIVGKIYFLLVRIKIKHME+ +I+RE+TGTG
Sbjct: 176 KYHLKDVIVGKIYFLLVRIKIKHMELQLIRRESTGTG 212

Vacuolar protein sorting-associated protein (Vps) 26 is one of around 50 proteins involved in protein trafficking. In particular, Vps26 assembles into a retromer complex with at least four other proteins Vps5, Vps17, Vps29 and Vps35. This family also contains Down syndrome critical region 3/A. Length = 275

>gnl|CDD|146336 pfam03643, Vps26, Vacuolar protein sorting-associated protein 26

 Score =  122 bits (309), Expect = 2e-33
 Identities = 55/63 (87%), Positives = 60/63 (95%)

Query: 129 PNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMD 188
           PN F E+ETIAK+EIMDGAPVRGESIPIR+FLAGYDL PTMRD+NKKFSVKYFLNLVL+D
Sbjct: 213 PNTFTESETIAKFEIMDGAPVRGESIPIRLFLAGYDLTPTMRDVNKKFSVKYFLNLVLVD 272

Query: 189 EED 191
           EED
Sbjct: 273 EED 275

Vacuolar protein sorting-associated protein (Vps) 26 is one of around 50 proteins involved in protein trafficking. In particular, Vps26 assembles into a retromer complex with at least four other proteins Vps5, Vps17, Vps29 and Vps35. This family also contains Down syndrome critical region 3/A. Length = 275

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
KOG3063|consensus	301		100.0
PF03643	275	Vps26: Vacuolar protein sorting-associated protein	100.0
KOG3063|consensus	301		100.0
PF03643	275	Vps26: Vacuolar protein sorting-associated protein	99.96
KOG2717|consensus	313		99.96
KOG2717|consensus	313		98.16
PF00339	149	Arrestin_N: Arrestin (or S-antigen), N-terminal do	97.65
KOG3780|consensus	427		97.52
PF02752	136	Arrestin_C: Arrestin (or S-antigen), C-terminal do	90.2
PF07070	218	Spo0M: SpoOM protein; InterPro: IPR009776 This fam	81.74

>KOG3063|consensus

Probab=100.00  E-value=5.5e-80  Score=562.83  Aligned_cols=221  Identities=67%  Similarity=1.123  Sum_probs=217.6

Q ss_pred             CCccc--cCCceEEEEEeCCCCCceeEEEecCCCcEEEEEEEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEee
Q psy9998           1 MSFFG--FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYY   78 (288)
Q Consensus         1 ~~~~g--f~~~~~i~I~ld~e~~r~~v~~k~~~gk~~~~piy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~   78 (288)
                      |||+|  |||+|+|+|.||++++|++|+.+.++|+++++|+|+|||+|+|+|.++++ +|++++||||+++|+||||++|
T Consensus         1 m~~l~~fF~~~~di~i~~~~~e~Rk~v~~k~e~g~~e~~~lf~dgEtv~G~V~l~lk-~gkkleH~GikiefiGqIe~~~   79 (301)
T KOG3063|consen    1 MNFLGGFFKPSIDIEILFDNEESRKQVDMKTEDGKKEKHPLFYDGETVSGKVNLRLK-DGKKLEHQGIKIEFIGQIEMYY   79 (301)
T ss_pred             CchhhcccCCCeeEEEEEcCchhheeccccccCCceeeeeeEecCCeeeeEEEEEEc-CCcccccCceEEEEEEEEEEEe
Confidence            88887  99999999999999999999999999999999999999999999999999 6999999999999999999999


Q ss_pred             ccCCeEEEEEEEEEeeCCCccCcCceeeEEEeccCcccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEE
Q psy9998          79 DRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRV  158 (288)
Q Consensus        79 d~~~~~ef~~~~~eL~~pG~l~~~~~i~FeF~~vek~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl  158 (288)
                      |+||.++|.+++++||+||+|.+++++||+|.+++|+||||.|+||+                              +| 
T Consensus        80 drgn~~eF~~lv~eLa~pGel~~~~~fpFeF~~vekpyEsY~G~NV~------------------------------lr-  128 (301)
T KOG3063|consen   80 DRGNFHEFTSLVRELARPGELTQSQSFPFEFPHVEKPYESYIGKNVR------------------------------LR-  128 (301)
T ss_pred             cCCcHHHHHHHHHhhcCCcceeecccCCccccccccchhhhcCcceE------------------------------EE-
Confidence            99999999999999999999999999999999999999999999999                              88 


Q ss_pred             eccCccCCcchhhhccceeEeEEEEEEEEecCCceeeeeeeeccCcceeeeEEEeccccCCCCCCCceeeeCCccEEEEE
Q psy9998         159 FLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIE  238 (288)
Q Consensus       159 ~L~~~~ltPT~~~v~~~Fsv~Y~l~lvl~de~~rryfk~~ei~~~~~k~~ef~v~~~~~~p~~~~~i~mevgie~~lhie  238 (288)
                                           |+|++++.    ||+       +|++|+.|||||+++++|+.|+|||||||||||||||
T Consensus       129 ---------------------Y~lkvTv~----Rr~-------~di~ke~d~~V~~~~~~P~~nn~IkmeVGIedCLHIE  176 (301)
T KOG3063|consen  129 ---------------------YFLKVTVS----RRL-------TDIVKEKDLVVHNLSTYPEINNSIKMEVGIEDCLHIE  176 (301)
T ss_pred             ---------------------EEEEEEEE----ech-------hhhhhhhheeeEecccCCCCCCceeEeechhhceEEE
Confidence                                 99999999    999       7999999999999999999999999999999999999


Q ss_pred             EEeccccceeecceEEeEEEEEEeecceeEEEEEEEEEEeeccCCcee
Q psy9998         239 FEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFLS  286 (288)
Q Consensus       239 f~y~k~~~~~l~d~i~G~i~f~l~~~~ik~mei~i~r~Et~g~~~~~~  286 (288)
                      |||||++ |||+|+|+|||||+||||||||||++|+|||++|+|+|+.
T Consensus       177 FEYnKsk-YhLkdvIvGkIYFlLvRikIk~Mel~iikrEstG~gpn~~  223 (301)
T KOG3063|consen  177 FEYNKSK-YHLKDVIVGKIYFLLVRIKIKHMELSIIKRESTGTGPNTY  223 (301)
T ss_pred             EEecccc-cchhheEEeeEEEEEEEEEeeeeEEEEEEeecccCCCcce
Confidence            9999999 9999999999999999999999999999999999999875

>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules

Probab=100.00  E-value=1.5e-65  Score=477.10  Aligned_cols=215  Identities=58%  Similarity=0.943  Sum_probs=178.2

Q ss_pred             cCCceEEEEEeCCCCCceeEEEecCCCcEEEEEEEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEeeccCCeEE
Q psy9998           6 FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHE   85 (288)
Q Consensus         6 f~~~~~i~I~ld~e~~r~~v~~k~~~gk~~~~piy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~d~~~~~e   85 (288)
                      ||++|+|+|.|||++.|++|+++.++|+++.+|+|++||+|+|+|.|+++ +||+++|+||+++|+|+||++|+++++++
T Consensus         1 f~~~~~i~i~l~~~~~rk~v~~~~~~~~~~~~~iY~~gE~V~G~V~I~~~-~gk~~~H~GI~l~lvG~ie~~~~~~k~~~   79 (275)
T PF03643_consen    1 FGPPCDIDIELDDEDSRKKVEVKTDDGKKEKNPIYSDGETVSGKVVITSK-PGKSLEHQGIKLELVGQIEAFYDSGKPIE   79 (275)
T ss_dssp             TTTTEEEEEEETTCCCS-EEEEE-TTS-EEEEEEEETC--EEEEEEEEES-STS-EEES-EEEEEEEEEEEGCCTT-EEE
T ss_pred             CCCceEEEEEECCCcccceEEEECCCCCEEEeceEcCCCEEEEEEEEEEC-CCCceEEeeEEEEEEEeEeEeccCCCceE
Confidence            79999999999999999999999999999999999999999999999999 69999999999999999999999999999


Q ss_pred             EEEEEEEeeCCCccCcCceeeEEEeccCcccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccC
Q psy9998          86 FVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDL  165 (288)
Q Consensus        86 f~~~~~eL~~pG~l~~~~~i~FeF~~vek~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~l  165 (288)
                      |++.++||++||+|++.+++||+|..++++||||||++|+                              ||        
T Consensus        80 f~~~~~eL~~~G~l~~~~t~pFeF~~~~k~yETY~G~~v~------------------------------i~--------  121 (275)
T PF03643_consen   80 FLSLSIELAPPGKLPEGKTFPFEFPLVEKPYETYHGVNVN------------------------------IR--------  121 (275)
T ss_dssp             EEEEEEEEE-SEEE-S-EEEEEEE-SB---S--EE-SSEE------------------------------EE--------
T ss_pred             eEEeeEEEcCCcccCCCcEEeeEeCCCCCCCccEeeeEEE------------------------------EE--------
Confidence            9999999999999998888999999999999999999999                              88        


Q ss_pred             CcchhhhccceeEeEEEEEEEEecCCceeeeeeeeccCcceeeeEEEeccccCCCCCCCceeeeCCccEEEEEEEecccc
Q psy9998         166 APTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCN  245 (288)
Q Consensus       166 tPT~~~v~~~Fsv~Y~l~lvl~de~~rryfk~~ei~~~~~k~~ef~v~~~~~~p~~~~~i~mevgie~~lhief~y~k~~  245 (288)
                                    |+|++++.    |+|       +++++++||||+.+...|+.+.||+|||||||||||||+|+|++
T Consensus       122 --------------Y~lrv~v~----R~~-------~~i~k~~ef~V~~~~~~p~~~~~ik~evgie~~lhief~~~k~~  176 (275)
T PF03643_consen  122 --------------YFLRVTVK----RSY-------KDISKEQEFWVQNFSITPESNQPIKMEVGIEDCLHIEFEYDKSK  176 (275)
T ss_dssp             --------------EEEEEEE------SS-------S-EEEEEEEEEE-EB--------EEEEECETTTEEEEEEES-SE
T ss_pred             --------------EEEEEEEE----ccC-------CCcceEEEEEEEeccCCCCCCCCcccccCCCccEEEEEEEcccc
Confidence                          99999999    999       79999999999999999999999999999999999999999999


Q ss_pred             ceeecceEEeEEEEEEeecceeEEEEEEEEEEeeccCCce
Q psy9998         246 TWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFL  285 (288)
Q Consensus       246 ~~~l~d~i~G~i~f~l~~~~ik~mei~i~r~Et~g~~~~~  285 (288)
                       |||+|+|+|+|||+++|+|||||||||+|+||||+|.+.
T Consensus       177 -~~l~d~i~G~i~f~lv~~kIk~~elqLiR~Et~g~~~~~  215 (275)
T PF03643_consen  177 -YHLKDVITGKIYFLLVRIKIKSMELQLIRVETCGCGENY  215 (275)
T ss_dssp             -EETT-EEEEEEEEEEESS-EEEEEEEEEEEEEECECCCE
T ss_pred             -eECCCCEEEEEEEEEEeecceEEEEEEEEEEEEecCCcc
Confidence             999999999999999999999999999999999999765

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.

>KOG3063|consensus

Probab=100.00  E-value=1.2e-43  Score=324.60  Aligned_cols=195  Identities=47%  Similarity=0.692  Sum_probs=177.9

Q ss_pred             CCceEEEEEeCCCCCceeEEEecCCCcEEEEE-----------EEecCCceeeEEEE--EECCCCceeeEecEEEEEEEE
Q psy9998           7 GQSADIEIKLDGTDTRKLADIKSDDGKKERFY-----------LYYDGESVTGQVNI--VLKKHGSKLEHQGIKIEFIGQ   73 (288)
Q Consensus         7 ~~~~~i~I~ld~e~~r~~v~~k~~~gk~~~~p-----------iy~dge~V~G~V~I--~~~~~Gk~leH~GI~veliG~   73 (288)
                      |+..+.+++-|||...++|.++.++||+.+|.           +|+|.+++..++.+  ++..||...+.|...++|.. 
T Consensus        34 g~~e~~~lf~dgEtv~G~V~l~lk~gkkleH~GikiefiGqIe~~~drgn~~eF~~lv~eLa~pGel~~~~~fpFeF~~-  112 (301)
T KOG3063|consen   34 GKKEKHPLFYDGETVSGKVNLRLKDGKKLEHQGIKIEFIGQIEMYYDRGNFHEFTSLVRELARPGELTQSQSFPFEFPH-  112 (301)
T ss_pred             CceeeeeeEecCCeeeeEEEEEEcCCcccccCceEEEEEEEEEEEecCCcHHHHHHHHHhhcCCcceeecccCCccccc-
Confidence            56778899999999999999999999998887           99999999999988  78889999999999999997 


Q ss_pred             EEEeeccCCe---------------------EEEEEEEEEeeCCCccCcCceeeEEE-----eccCccccc--ccccccc
Q psy9998          74 IELYYDRGNH---------------------HEFVSLVKELARPGELIQNTTYKFEF-----LNVEKPYES--YTGSNVF  125 (288)
Q Consensus        74 Ie~~~d~~~~---------------------~ef~~~~~eL~~pG~l~~~~~i~FeF-----~~vek~yES--Y~G~~Vr  125 (288)
                      +++.|+++.+                     .+...|+..++..++++.  ++++|.     +|+|++|.+  ||.++|-
T Consensus       113 vekpyEsY~G~NV~lrY~lkvTv~Rr~~di~ke~d~~V~~~~~~P~~nn--~IkmeVGIedCLHIEFEYnKskYhLkdvI  190 (301)
T KOG3063|consen  113 VEKPYESYIGKNVRLRYFLKVTVSRRLTDIVKEKDLVVHNLSTYPEINN--SIKMEVGIEDCLHIEFEYNKSKYHLKDVI  190 (301)
T ss_pred             cccchhhhcCcceEEEEEEEEEEEechhhhhhhhheeeEecccCCCCCC--ceeEeechhhceEEEEEecccccchhheE
Confidence            9999998876                     456678888888888877  899999     699999976  9999953


Q ss_pred             --------------------------cCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeEe
Q psy9998         126 --------------------------TPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVK  179 (288)
Q Consensus       126 --------------------------~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv~  179 (288)
                                                +.||+++.|++|+++||||||||+|||+|||||||+|++||||+++++|+|||+
T Consensus       191 vGkIYFlLvRikIk~Mel~iikrEstG~gpn~~~e~eTiakyeIMDGapvrGEsIPiRlFLagYdlTPtmrdinkkFsVk  270 (301)
T KOG3063|consen  191 VGKIYFLLVRIKIKHMELSIIKRESTGTGPNTYVETETIAKYEIMDGAPVRGESIPIRLFLAGYDLTPTMRDINKKFSVK  270 (301)
T ss_pred             EeeEEEEEEEEEeeeeEEEEEEeecccCCCcceeccceeeeEEeccCCCcCCCeeeeEEEecccCCCcchhhhcceeeee
Confidence                                      148999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEecCCceeeeeeeeccCc
Q psy9998         180 YFLNLVLMDEEDRRYFKQQVFTPNL  204 (288)
Q Consensus       180 Y~l~lvl~de~~rryfk~~ei~~~~  204 (288)
                      |||+|||+|||||||||||||+.-.
T Consensus       271 yyLnLVlvDeedRRYFKQqEItLwR  295 (301)
T KOG3063|consen  271 YYLNLVLVDEEDRRYFKQQEITLWR  295 (301)
T ss_pred             eEEEEEEEchhhhhhhhheeEEEEE
Confidence            9999999999999999999998543

>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules

Probab=99.96  E-value=3e-29  Score=233.95  Aligned_cols=182  Identities=36%  Similarity=0.479  Sum_probs=123.5

Q ss_pred             CCceEEEEEeCCCCCceeEEEecCCCcEEEEE-----------EEecCCceeeEEEE--EECCCCceeeEecEEEEEEEE
Q psy9998           7 GQSADIEIKLDGTDTRKLADIKSDDGKKERFY-----------LYYDGESVTGQVNI--VLKKHGSKLEHQGIKIEFIGQ   73 (288)
Q Consensus         7 ~~~~~i~I~ld~e~~r~~v~~k~~~gk~~~~p-----------iy~dge~V~G~V~I--~~~~~Gk~leH~GI~veliG~   73 (288)
                      |.....+|+.+||...++|.++.++||+.+|.           .++++.+....+..  ++.+||+..+-+.+.++|.. 
T Consensus        27 ~~~~~~~iY~~gE~V~G~V~I~~~~gk~~~H~GI~l~lvG~ie~~~~~~k~~~f~~~~~eL~~~G~l~~~~t~pFeF~~-  105 (275)
T PF03643_consen   27 GKKEKNPIYSDGETVSGKVVITSKPGKSLEHQGIKLELVGQIEAFYDSGKPIEFLSLSIELAPPGKLPEGKTFPFEFPL-  105 (275)
T ss_dssp             S-EEEEEEEETC--EEEEEEEEESSTS-EEES-EEEEEEEEEEEGCCTT-EEEEEEEEEEEE-SEEE-S-EEEEEEE-S-
T ss_pred             CCEEEeceEcCCCEEEEEEEEEECCCCceEEeeEEEEEEEeEeEeccCCCceEeEEeeEEEcCCcccCCCcEEeeEeCC-
Confidence            34567899999999999999999999998887           56677766667655  78779988888889999986 


Q ss_pred             EEEeeccCCe---------------------EEEEEEEEEeeCCCccCcCceeeEEE-----eccCccccc--ccccccc
Q psy9998          74 IELYYDRGNH---------------------HEFVSLVKELARPGELIQNTTYKFEF-----LNVEKPYES--YTGSNVF  125 (288)
Q Consensus        74 Ie~~~d~~~~---------------------~ef~~~~~eL~~pG~l~~~~~i~FeF-----~~vek~yES--Y~G~~Vr  125 (288)
                      ++..|+++++                     .+.-.|+..+...++..  .+++++.     .++++.|.+  ||..++=
T Consensus       106 ~~k~yETY~G~~v~i~Y~lrv~v~R~~~~i~k~~ef~V~~~~~~p~~~--~~ik~evgie~~lhief~~~k~~~~l~d~i  183 (275)
T PF03643_consen  106 VEKPYETYHGVNVNIRYFLRVTVKRSYKDISKEQEFWVQNFSITPESN--QPIKMEVGIEDCLHIEFEYDKSKYHLKDVI  183 (275)
T ss_dssp             B---S--EE-SSEEEEEEEEEEE--SSS-EEEEEEEEEE-EB----------EEEEECETTTEEEEEEES-SEEETT-EE
T ss_pred             CCCCCccEeeeEEEEEEEEEEEEEccCCCcceEEEEEEEeccCCCCCC--CCcccccCCCccEEEEEEEcccceECCCCE
Confidence            7777887776                     45556666666555444  3688888     477888865  8887731


Q ss_pred             --------------------------cCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeEe
Q psy9998         126 --------------------------TPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVK  179 (288)
Q Consensus       126 --------------------------~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv~  179 (288)
                                                +.+++..+|+++|++||||||+|||||+|||||||++++||||+++++|+|||+
T Consensus       184 ~G~i~f~lv~~kIk~~elqLiR~Et~g~~~~~~~e~t~i~~~eImDG~p~rge~IPirl~l~~l~l~Pt~~~~~~~FsV~  263 (275)
T PF03643_consen  184 TGKIYFLLVRIKIKSMELQLIRVETCGCGENYAKESTEIQKIEIMDGAPCRGESIPIRLFLPRLFLCPTYKNVNNKFSVE  263 (275)
T ss_dssp             EEEEEEEEESS-EEEEEEEEEEEEEECECCCEEEEEEEEEEEEEESS---TT-EEEEEEECCCT-----EEEECTTEEEE
T ss_pred             EEEEEEEEEeecceEEEEEEEEEEEEecCCcccccceEEEEEEeecCCccccceeeEEEEcCCcccCCcchhcCCcEEEE
Confidence                                      126788999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEecCC
Q psy9998         180 YFLNLVLMDEED  191 (288)
Q Consensus       180 Y~l~lvl~de~~  191 (288)
                      |+|||+|+||||
T Consensus       264 y~lnlvlide~d  275 (275)
T PF03643_consen  264 YELNLVLIDEDD  275 (275)
T ss_dssp             EEEEEEEEETT-
T ss_pred             EEEEEEEEcCCC
Confidence            999999999997

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.

>KOG2717|consensus

Probab=99.96  E-value=2.9e-28  Score=223.62  Aligned_cols=181  Identities=25%  Similarity=0.406  Sum_probs=156.5

Q ss_pred             EEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEe------------eccCCeEEEEEEEEEeeCCCccC-cCcee
Q psy9998          39 LYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELY------------YDRGNHHEFVSLVKELARPGELI-QNTTY  105 (288)
Q Consensus        39 iy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~------------~d~~~~~ef~~~~~eL~~pG~l~-~~~~i  105 (288)
                      +|..+|.+.|+|.|.++   .+++||||++.+.|++++|            |++-++++.+..+.|+..||+++ +.++|
T Consensus        15 iy~s~e~l~G~vvi~sa---~s~~Hqgi~L~~eG~VNLQlsaksvGvfeaFYnsvKPIqiv~~tiE~~~pGK~p~G~tEi   91 (313)
T KOG2717|consen   15 IYRSSEPLEGKVVIKSA---TSISHQGIRLSVEGSVNLQLSAKSVGVFEAFYNSVKPIQIVKKTIEVKSPGKIPPGTTEI   91 (313)
T ss_pred             eeecCCccceeEEEEec---cccccceEEEEEeeEEEEEEeccceeeeHHhhccccchhhhhceEEEecCCCCCCCceee
Confidence            89999999999999988   7899999999999999885            66777799999999999999998 99999


Q ss_pred             eEEEec-----cCcccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeEeE
Q psy9998         106 KFEFLN-----VEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY  180 (288)
Q Consensus       106 ~FeF~~-----vek~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv~Y  180 (288)
                      ||||+.     -++.||+|||++++                              |+                      |
T Consensus        92 pFelpL~~kge~~~lYETyHGvfiN------------------------------iq----------------------Y  119 (313)
T KOG2717|consen   92 PFELPLREKGEGEKLYETYHGVFIN------------------------------IQ----------------------Y  119 (313)
T ss_pred             eeeeeeccCCCccEeeeeecceEEE------------------------------EE----------------------E
Confidence            999963     35699999999999                              88                      9


Q ss_pred             EEEEEEEecCCceeeeeeeeccCcceeeeEEEecccc-CCCC-CCCceeeeCCccE------------EEEEEEeccccc
Q psy9998         181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSS-YPEM-NSPIKMEVGIEDC------------LHIEFEYNKCNT  246 (288)
Q Consensus       181 ~l~lvl~de~~rryfk~~ei~~~~~k~~ef~v~~~~~-~p~~-~~~i~mevgie~~------------lhief~y~k~~~  246 (288)
                      -|.+.+.    |.|     +.|+++|.+||+||+... .|+. +..+-+-+..+..            +.+.+.+|.+. 
T Consensus       120 ~Ltcdik----R~~-----L~K~ltkt~eFiv~s~pv~l~e~~p~iV~F~itpdtlq~~~ker~~~p~FlvtG~Ld~t~-  189 (313)
T KOG2717|consen  120 LLTCDIK----RGY-----LHKPLTKTMEFIVESGPVDLPERPPEIVIFYITPDTLQHPLKERIKTPGFLVTGKLDATQ-  189 (313)
T ss_pred             EEEEecc----cch-----hcCchhhhheeeeccCCcccccCCCcceEEEEChHHhhccchhhccCCceEEEeeeccee-
Confidence            9999999    999     689999999999998742 3332 2223333333322            45899999999 


Q ss_pred             eeecceEEeEEEEEEeecceeEEEEEEEEEEeeccCCc
Q psy9998         247 WNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIF  284 (288)
Q Consensus       247 ~~l~d~i~G~i~f~l~~~~ik~mei~i~r~Et~g~~~~  284 (288)
                      |+|+|++.|.+........|+++|+|++|+||||||..
T Consensus       190 c~~t~PltGeltVe~seaaI~Sie~qLvRVEtcgc~Eg  227 (313)
T KOG2717|consen  190 CSLTDPLTGELTVEASEAAITSIEIQLVRVETCGCGEG  227 (313)
T ss_pred             eEecCCccceEEEEeeccceeEEEEEEEEEEEeecccc
Confidence            99999999999999999999999999999999999954

>KOG2717|consensus

Probab=98.16  E-value=3.6e-06  Score=78.69  Aligned_cols=60  Identities=23%  Similarity=0.407  Sum_probs=54.2

Q ss_pred             cccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeEeEEEEEEEEecCC
Q psy9998         130 NVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEED  191 (288)
Q Consensus       130 ~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv~Y~l~lvl~de~~  191 (288)
                      ...+|...||+.||+||+.||+.++||.+.|+++.+|||.  ..+.|+|+|.+|+++...+|
T Consensus       227 gy~~dateIQsiQIADGdVcr~l~lPIymvlPRLftCPtl--~t~nFkvEFevni~v~fk~d  286 (313)
T KOG2717|consen  227 GYVTDATEIQSIQIADGDVCRNLTLPIYMVLPRLFTCPTL--FTGNFKVEFEVNITVSFKSD  286 (313)
T ss_pred             ceecccceeeeEEeccCccccCCceeEEEEechhhcCCce--eccccEEEEEEEEEEEEccc
Confidence            3456788999999999999999999999999999999999  78889999999999995444

>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=97.65  E-value=0.0001  Score=59.95  Aligned_cols=40  Identities=23%  Similarity=0.494  Sum_probs=31.8

Q ss_pred             EEEEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEeec
Q psy9998          37 FYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYD   79 (288)
Q Consensus        37 ~piy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~d   79 (288)
                      .++|+.||.|+|.|.+.+.   +.+.=++|++.|.|.......
T Consensus         9 ~~~y~~Ge~I~G~V~l~~~---~~~~i~~i~v~l~G~~~~~~~   48 (149)
T PF00339_consen    9 KPVYFPGEVISGKVVLELS---KPIKIKSIKVRLKGRAKTKWS   48 (149)
T ss_dssp             EEEEESS--EEEEEEECTT---T-TTTSEEEEEEEEEEEESSS
T ss_pred             CCEECCCCEEEEEEEEEEC---CccceeEEEEEEEEEEEEEec
Confidence            5699999999999999877   667779999999998877554

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>KOG3780|consensus

Probab=97.52  E-value=0.034  Score=53.70  Aligned_cols=203  Identities=19%  Similarity=0.287  Sum_probs=109.4

Q ss_pred             EEEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEeeccCCeEEEEEEEEEeeCCCccCcCceeeEE----Eecc-
Q psy9998          38 YLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFE----FLNV-  112 (288)
Q Consensus        38 piy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~d~~~~~ef~~~~~eL~~pG~l~~~~~i~Fe----F~~v-  112 (288)
                      .+|..|+.++|.|.++.+   +...=++|++++.|.............-.    .....+... ..+..|.    +.+. 
T Consensus        16 ~iy~~G~~vsG~v~l~~~---~~~~~~~i~l~~~G~~~t~w~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~y~~~~   87 (427)
T KOG3780|consen   16 AIYFPGEPVSGSVVLSTK---EPIKVRAIKLQLKGRARTSWSESERGTKL----NSKSEGSIK-SSTVNYTAKETYLDSK   87 (427)
T ss_pred             cccCCCCeEEEEEEEEeC---CccceeEEEEEEEEeEEEeeccccccccc----ccccccccc-cceEEeeceEEEeeee
Confidence            699999999999999888   77888999999999876643221110000    000000000 0001110    0000 


Q ss_pred             CcccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeEeEEEEEEEEecCCc
Q psy9998         113 EKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDR  192 (288)
Q Consensus       113 ek~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv~Y~l~lvl~de~~r  192 (288)
                      ...+.+..|.+-+.     +               |--.-..|+++-|+.- +-||+....+  .|+|++++.|-    |
T Consensus        88 ~~~~~~~~g~~~~~-----l---------------~~G~~~~pF~~~LP~~-~P~Sfeg~~G--~irY~vk~~id----r  140 (427)
T KOG3780|consen   88 TILWTSSNGSNSRV-----L---------------PPGNYEFPFSFTLPLN-LPPSFEGKFG--HVRYFVKAEID----R  140 (427)
T ss_pred             eEEeeccCCCCcee-----c---------------CCCceEEeEeccCCCC-CCCceeeCCc--eEEEEEEEEEe----c
Confidence            00111222222200     0               0011133566555555 6666666555  56799999987    6


Q ss_pred             eeeeeeeeccCcceeeeEEEecc---ccCCCCCCCceee----eC----CccEEEEEEEeccccceeecceEEeEEEEEE
Q psy9998         193 RYFKQQVFTPNLIKELDIIVHTL---SSYPEMNSPIKME----VG----IEDCLHIEFEYNKCNTWNLKDVIVGKIYFLL  261 (288)
Q Consensus       193 ryfk~~ei~~~~~k~~ef~v~~~---~~~p~~~~~i~me----vg----ie~~lhief~y~k~~~~~l~d~i~G~i~f~l  261 (288)
                      .+      ..+......|.|...   ...|....++...    ++    -.-.+.++....++. |-..+.+...+.+.-
T Consensus       141 ~~------~~~~~~~~~~~V~~~~~ln~~p~~~~~~~~~~~k~~~~~~~~~g~v~~~~~ip~~~-~~~ge~i~~~~~i~n  213 (427)
T KOG3780|consen  141 PW------KLNKKNRKPFTVIETVDLNSSPSLLEPIISKASKKLGCVCFSSGPVSLELTIPKTG-YVPGETIPVTLEIEN  213 (427)
T ss_pred             CC------CCCccceeeEEEecccccccCccccCcchhhhhheeeEEEecCCcEEEEEEccccc-CcCCccEEEEEEEec
Confidence            44      335555555554332   1223322222211    11    122245667778877 877777777777666


Q ss_pred             e-ecceeEEEEEEEEEEeeccC
Q psy9998         262 V-RIKIKHMEIAIIKRETTGTG  282 (288)
Q Consensus       262 ~-~~~ik~mei~i~r~Et~g~~  282 (288)
                      . ...++.+++.++++.+....
T Consensus       214 ~ss~~~~~~~~~l~q~~~~~~~  235 (427)
T KOG3780|consen  214 KSSRTIKKVKAKLIQKISYLAF  235 (427)
T ss_pred             CCCCcceeeEEEEEEEEEEEee
Confidence            5 88899999999998866544

>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=90.20  E-value=7.8  Score=30.53  Aligned_cols=40  Identities=28%  Similarity=0.382  Sum_probs=28.7

Q ss_pred             EEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEeeccC
Q psy9998          39 LYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRG   81 (288)
Q Consensus        39 iy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~d~~   81 (288)
                      .|..||.+.-.+.|+-.   ++..-++|+++|.-.+......+
T Consensus        15 ~~~~Ge~i~v~v~i~n~---s~~~i~~I~v~L~~~~~~~~~~~   54 (136)
T PF02752_consen   15 AYVPGETIPVNVEIDNQ---SKKKIKKIKVSLVERITYKAKGG   54 (136)
T ss_dssp             EEETT--EEEEEEEEE----SSSEEEEEEEEEEEEEEE-SS--
T ss_pred             EECCCCEEEEEEEEEEC---CCCEEEEEEEEEEEEEEEEEeec
Confidence            79999999999999843   56788899999999887554443

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis

Probab=81.74  E-value=13  Score=34.39  Aligned_cols=118  Identities=22%  Similarity=0.280  Sum_probs=70.5

Q ss_pred             EEecCCceeeEEEEEECCCC-ceeeEecEEEEEEEEEEEeeccCC-eEEEEEEEEEeeCCCccC--cCceeeEEEec-cC
Q psy9998          39 LYYDGESVTGQVNIVLKKHG-SKLEHQGIKIEFIGQIELYYDRGN-HHEFVSLVKELARPGELI--QNTTYKFEFLN-VE  113 (288)
Q Consensus        39 iy~dge~V~G~V~I~~~~~G-k~leH~GI~veliG~Ie~~~d~~~-~~ef~~~~~eL~~pG~l~--~~~~i~FeF~~-ve  113 (288)
                      -|.+||.++|.|.|+   .| ...+=++|.+.|.-.++.-.+... ..+.......++.+-++.  ...++||+|.- -+
T Consensus        23 ~~~pGe~v~G~V~i~---GG~v~Q~I~~I~l~L~t~~~~e~~d~~~~~~~~~~~~~v~~~f~I~~ge~~~iPF~~~lP~e   99 (218)
T PF07070_consen   23 SVRPGETVRGEVHIK---GGSVDQEIDRIYLELVTRYEVESDDKEYTQEVELARVRVSGPFTIEPGEEKEIPFSFPLPWE   99 (218)
T ss_pred             CccCCCEEEEEEEEE---eCCcceEEeEEEEEEEEEEEEecCCCeEEEEEEEEEEEeCCCEEECCCCEEEEeEEEECCCC
Confidence            578899999999996   33 445667899999887776444332 233334445666666665  66779999961 22


Q ss_pred             cccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhcccee
Q psy9998         114 KPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFS  177 (288)
Q Consensus       114 k~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fs  177 (288)
                      -+-.. .|..+-            +.+-=-++++.=.++.=||+     +.-.|.+..+-..|+
T Consensus       100 tPiT~-~~~~v~------------l~T~LdI~~avD~~D~D~i~-----V~P~p~~~~vl~A~~  145 (218)
T PF07070_consen  100 TPITE-GGMRVW------------LRTGLDIAGAVDPGDLDPIE-----VEPLPAQQAVLDALE  145 (218)
T ss_pred             CCccC-CCcEEE------------EEEEEEeCCCCCCCCceeEE-----EeCCHHHHHHHHHHH
Confidence            22111 233322            22222456666667777777     445566665554443

Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
3lha_A	340	Crystal Structure Of Mouse Vps26b(R240sG241AE242S)		3e-73
3lha_A	340	Crystal Structure Of Mouse Vps26b(R240sG241AE242S)		7e-32
3lh8_A	340	Crystal Structure Of Mouse Vps26b In Spacegroup P41		3e-73
3lh8_A	340	Crystal Structure Of Mouse Vps26b In Spacegroup P41		2e-32
2r51_A	340	Crystal Structure Of Mouse Vps26b Length = 340		1e-72
2r51_A	340	Crystal Structure Of Mouse Vps26b Length = 340		1e-30
2fau_A	341	Crystal Structure Of Human Vps26 Length = 341		9e-67

>pdb|3LHA|A Chain A, Crystal Structure Of Mouse Vps26b(R240sG241AE242S) IN SPACEGROUP P41 21 2 Length = 340

Iteration: 1
 Score =  271 bits (694), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 146/277 (52%), Positives = 183/277 (66%), Gaps = 64/277 (23%)
Query: 6   FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQG 65
            GQS ++EI L+  ++RK A+ K++DGKKE+++L+YDGE+V+G+V++ LK    +LEHQG
Sbjct: 10  MGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKRLEHQG 69
Query: 66  IKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVF 125
           IKIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+  + FEF +VEKPYESYT     
Sbjct: 70  IKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYT----- 124
Query: 126 TPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLV 185
                                    G+++ +R FL     A   R +N            
Sbjct: 125 -------------------------GQNVKLRYFLR----ATISRRLN------------ 143
Query: 186 LMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCN 245
                            +++KE+DI+VHTLS+YPE+NS IKMEVGIEDCLHIEFEYNK  
Sbjct: 144 -----------------DVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSK 186
Query: 246 TWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
            ++LKDVIVGKIYFL V IKIKHMEI IIKRETTGTG
Sbjct: 187 -YHLKDVIVGKIYFLSVEIKIKHMEIDIIKRETTGTG 222

>pdb|3LHA|A Chain A, Crystal Structure Of Mouse Vps26b(R240sG241AE242S) IN SPACEGROUP P41 21 2 Length = 340

Iteration: 1
 Score =  134 bits (337), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 79/95 (83%), Gaps = 2/95 (2%)
Query: 129 PNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMD 188
           PNV++EN+TIAKYEIMDGAPVRG SIPIR+FLAGY+L PTMRDINKKFSV+Y+LNLVL+D
Sbjct: 223 PNVYHENDTIAKYEIMDGAPVRGSSIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLID 282
Query: 189 EEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNS 223
           EE+RRYFKQQ     L ++ DI+  ++S    + S
Sbjct: 283 EEERRYFKQQEVV--LWRKGDIVRKSMSHQAAIAS 315

>pdb|3LH8|A Chain A, Crystal Structure Of Mouse Vps26b In Spacegroup P41 21 2 Length = 340

Iteration: 1
 Score =  271 bits (693), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 146/277 (52%), Positives = 183/277 (66%), Gaps = 64/277 (23%)
Query: 6   FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQG 65
            GQS ++EI L+  ++RK A+ K++DGKKE+++L+YDGE+V+G+V++ LK    +LEHQG
Sbjct: 10  MGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKRLEHQG 69
Query: 66  IKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVF 125
           IKIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+  + FEF +VEKPYESYT     
Sbjct: 70  IKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYT----- 124
Query: 126 TPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLV 185
                                    G+++ +R FL     A   R +N            
Sbjct: 125 -------------------------GQNVKLRYFLR----ATISRRLN------------ 143
Query: 186 LMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCN 245
                            +++KE+DI+VHTLS+YPE+NS IKMEVGIEDCLHIEFEYNK  
Sbjct: 144 -----------------DVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSK 186
Query: 246 TWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
            ++LKDVIVGKIYFL V IKIKHMEI IIKRETTGTG
Sbjct: 187 -YHLKDVIVGKIYFLSVEIKIKHMEIDIIKRETTGTG 222

>pdb|3LH8|A Chain A, Crystal Structure Of Mouse Vps26b In Spacegroup P41 21 2 Length = 340

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/95 (68%), Positives = 80/95 (84%), Gaps = 2/95 (2%)
Query: 129 PNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMD 188
           PNV++EN+TIAKYEIMDGAPVRGESIPIR+FLAGY+L PTMRDINKKFSV+Y+LNLVL+D
Sbjct: 223 PNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLID 282
Query: 189 EEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNS 223
           EE+RRYFKQQ     L ++ DI+  ++S    + S
Sbjct: 283 EEERRYFKQQEVV--LWRKGDIVRKSMSHQAAIAS 315

>pdb|2R51|A Chain A, Crystal Structure Of Mouse Vps26b Length = 340

Iteration: 1
 Score =  269 bits (688), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/276 (52%), Positives = 182/276 (65%), Gaps = 64/276 (23%)
Query: 7   GQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGI 66
           GQS ++EI L+  ++RK A+ K++DGKKE+++L+YDGE+V+G+V++ LK    +LEHQGI
Sbjct: 11  GQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKRLEHQGI 70
Query: 67  KIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFT 126
           KIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+  + FEF +VEKPYESYT      
Sbjct: 71  KIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYT------ 124
Query: 127 PRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVL 186
                                   G+++ +R FL     A   R +N             
Sbjct: 125 ------------------------GQNVKLRYFLR----ATISRRLN------------- 143
Query: 187 MDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCNT 246
                           +++KE DI+VHTLS+YPE+NS IK EVGIEDCLHIEFEYNK   
Sbjct: 144 ----------------DVVKEXDIVVHTLSTYPELNSSIKXEVGIEDCLHIEFEYNKSK- 186
Query: 247 WNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           ++LKDVIVGKIYFLLVRIKIKH EI IIKRETTGTG
Sbjct: 187 YHLKDVIVGKIYFLLVRIKIKHXEIDIIKRETTGTG 222

>pdb|2R51|A Chain A, Crystal Structure Of Mouse Vps26b Length = 340

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 77/95 (81%), Gaps = 2/95 (2%)
Query: 129 PNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMD 188
           PNV++EN+TIAKYEI DGAPVRGESIPIR+FLAGY+L PT RDINKKFSV+Y+LNLVL+D
Sbjct: 223 PNVYHENDTIAKYEIXDGAPVRGESIPIRLFLAGYELTPTXRDINKKFSVRYYLNLVLID 282
Query: 189 EEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNS 223
           EE+RRYFKQQ     L ++ DI+  + S    + S
Sbjct: 283 EEERRYFKQQEVV--LWRKGDIVRKSXSHQAAIAS 315

>pdb|2FAU|A Chain A, Crystal Structure Of Human Vps26 Length = 341

Iteration: 1
 Score =  249 bits (637), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 138/284 (48%), Positives = 182/284 (64%), Gaps = 66/284 (23%)
Query: 1   MSFFG--FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHG 58
           MSF G  FG   +I+I L+  +TRK+A++K++DGK E+ YL+YDGESV+G+VN+  K+ G
Sbjct: 3   MSFLGGFFGPIXEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 62
Query: 59  SKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYES 118
            +LEHQGI+IEF+GQIEL+ D+ N HEFV+LVKELA PGEL Q+ +Y FEF+ VEKPYES
Sbjct: 63  KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES 122
Query: 119 YTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSV 178
           Y G+NV                                                     +
Sbjct: 123 YIGANV----------------------------------------------------RL 130
Query: 179 KYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIE 238
           +YFL + ++    RR         +L+KE D+IVH L++YP++N+ IKMEVGIED LHIE
Sbjct: 131 RYFLKVTIV----RR-------LTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDXLHIE 179
Query: 239 FEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           FEYNK   ++LKDVIVGKIYFLLVRIKI+HME+ +IK+E TG G
Sbjct: 180 FEYNKSK-YHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIG 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	1e-77
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	3e-27
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	2e-75
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	8e-28

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens} Length = 341

 Score =  238 bits (608), Expect = 1e-77
 Identities = 138/284 (48%), Positives = 183/284 (64%), Gaps = 66/284 (23%)

Query: 1   MSFFG--FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHG 58
           MSF G  FG   +I+I L+  +TRK+A++K++DGK E+ YL+YDGESV+G+VN+  K+ G
Sbjct: 3   MSFLGGFFGPIXEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 62

Query: 59  SKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYES 118
            +LEHQGI+IEF+GQIEL+ D+ N HEFV+LVKELA PGEL Q+ +Y FEF+ VEKPYES
Sbjct: 63  KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES 122

Query: 119 YTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSV 178
           Y G+NV                                                     +
Sbjct: 123 YIGANV----------------------------------------------------RL 130

Query: 179 KYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIE 238
           +YFL + ++    RR         +L+KE D+IVH L++YP++N+ IKMEVGIED LHIE
Sbjct: 131 RYFLKVTIV----RRLT-------DLVKEYDLIVHQLATYPDVNNSIKMEVGIEDXLHIE 179

Query: 239 FEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           FEYNK + ++LKDVIVGKIYFLLVRIKI+HME+ +IK+E TG G
Sbjct: 180 FEYNK-SKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIG 222

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens} Length = 341

 Score =  107 bits (267), Expect = 3e-27
 Identities = 58/77 (75%), Positives = 64/77 (83%)

Query: 125 FTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNL 184
               P+   E ETIAKYEIMDGAPV+GESIPIR+FLAGYD  PTMRD+NKKFSV+YFLNL
Sbjct: 219 TGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNL 278

Query: 185 VLMDEEDRRYFKQQVFT 201
           VL+DEEDRRYFKQQ   
Sbjct: 279 VLVDEEDRRYFKQQEII 295

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A Length = 340

 Score =  233 bits (594), Expect = 2e-75
 Identities = 147/281 (52%), Positives = 184/281 (65%), Gaps = 64/281 (22%)

Query: 2   SFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKL 61
                GQS ++EI L+  ++RK A+ K++DGKKE+++L+YDGE+V+G+V++ LK    +L
Sbjct: 6   HHHHMGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKRL 65

Query: 62  EHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTG 121
           EHQGIKIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+  + FEF +VEKPYESYTG
Sbjct: 66  EHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTG 125

Query: 122 SNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYF 181
                                                               +   ++YF
Sbjct: 126 ----------------------------------------------------QNVKLRYF 133

Query: 182 LNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEY 241
           L   +     RR         +++KE+DI+VHTLS+YPE+NS IKMEVGIEDCLHIEFEY
Sbjct: 134 LRATIS----RRL-------NDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEY 182

Query: 242 NKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
           NK + ++LKDVIVGKIYFLLVRIKIKHMEI IIKRETTGTG
Sbjct: 183 NK-SKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTG 222

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A Length = 340

 Score =  108 bits (271), Expect = 8e-28
 Identities = 79/199 (39%), Positives = 104/199 (52%), Gaps = 32/199 (16%)

Query: 7   GQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGI 66
           GQ+  +   L  T +R+L D+     K+    ++          +I ++       H   
Sbjct: 125 GQNVKLRYFLRATISRRLNDVV----KEMDIVVHTLSTYPELNSSIKMEVGIEDCLH--- 177

Query: 67  KIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNV-- 124
                  IE  Y++  +H              L      K  FL V    +      +  
Sbjct: 178 -------IEFEYNKSKYH--------------LKDVIVGKIYFLLVRIKIKHMEIDIIKR 216

Query: 125 --FTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFL 182
                 PNV++EN+TIAKYEIMDGAPVRGESIPIR+FLAGY+L PTMRDINKKFSV+Y+L
Sbjct: 217 ETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYL 276

Query: 183 NLVLMDEEDRRYFKQQVFT 201
           NLVL+DEE+RRYFKQQ   
Sbjct: 277 NLVLIDEEERRYFKQQEVV 295

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	100.0
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	100.0
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	99.94
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	99.92
1g4m_A	393	Beta-arrestin1; sensory transduction, alternative	94.9

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.6e-59  Score=441.73  Aligned_cols=221  Identities=63%  Similarity=1.094  Sum_probs=209.9

Q ss_pred             CCccc--cCCceEEEEEeCCCCCceeEEEecCCCcEEEEEEEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEee
Q psy9998           1 MSFFG--FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYY   78 (288)
Q Consensus         1 ~~~~g--f~~~~~i~I~ld~e~~r~~v~~k~~~gk~~~~piy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~   78 (288)
                      |||||  ||++|+|+|.|||+++|++++++.++|+++++|+|++||+|+|+|.|+++++||+++|+||+|+++|+++++|
T Consensus         3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vY~~GE~VsG~V~I~~~~~gk~l~h~GIki~~~G~~e~~~   82 (341)
T 2fau_A            3 MSFLGGFFGPIXEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELFN   82 (341)
T ss_dssp             -----CTTTTTEEEEEEETTGGGSCEEEEECTTSCEEEEEEECTTCCEEEEEEEEESSSSCCEEESCEEEEEEEEEEECS
T ss_pred             cchhhhhcCCCceEEEEECCCCccceEEeecCCCceeccCcCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEEEEEEEe
Confidence            89999  9999999999999999999999999999999999999999999999999878999999999999999999999


Q ss_pred             ccCCeEEEEEEEEEeeCCCccCcCceeeEEEeccCcccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEE
Q psy9998          79 DRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRV  158 (288)
Q Consensus        79 d~~~~~ef~~~~~eL~~pG~l~~~~~i~FeF~~vek~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl  158 (288)
                      ++++.++|++.+.+|++||+|+..++|||+|.+++++||||+|.+++                              || 
T Consensus        83 ~~~~~~~fls~~~eL~~~G~L~~g~~fpF~F~~~~~~~eSy~G~~~~------------------------------Ir-  131 (341)
T 2fau_A           83 DKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGANVR------------------------------LR-  131 (341)
T ss_dssp             TTCCEEEEEEEEEEEECSEEECSCEEEEEEECSCCCCSCCEECSSEE------------------------------EE-
T ss_pred             cCCCcEEEEEEEEEEcCCCccCCCcEEeeEeCCCCCCCcceEeeEEE------------------------------EE-
Confidence            99999999999999999999995599999999999999999999999                              88 


Q ss_pred             eccCccCCcchhhhccceeEeEEEEEEEEecCCceeeeeeeeccCcceeeeEEEeccccCCCCCCCceeeeCCccEEEEE
Q psy9998         159 FLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIE  238 (288)
Q Consensus       159 ~L~~~~ltPT~~~v~~~Fsv~Y~l~lvl~de~~rryfk~~ei~~~~~k~~ef~v~~~~~~p~~~~~i~mevgie~~lhie  238 (288)
                                           |+|+++|.    |+|       +|++++.||||+.+++.|+.+.||+||||+|||||||
T Consensus       132 ---------------------Y~vrv~i~----R~~-------~di~~~~eF~V~~~~~~p~~~~pi~~evgied~L~ie  179 (341)
T 2fau_A          132 ---------------------YFLKVTIV----RRL-------TDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDXLHIE  179 (341)
T ss_dssp             ---------------------EEEEEEEC----CSS-------SCEEEEEEEEECCCBCCCCCCCCEEEEEEETTTEEEE
T ss_pred             ---------------------EEEEEEEE----ecC-------cceeEEEEEEEEeCCCCCCCCCCeEEEEeccccEEEE
Confidence                                 99999999    999       4999999999999988899999999999999999999


Q ss_pred             EEeccccceeecceEEeEEEEEEeecceeEEEEEEEEEEeeccCCce
Q psy9998         239 FEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFL  285 (288)
Q Consensus       239 f~y~k~~~~~l~d~i~G~i~f~l~~~~ik~mei~i~r~Et~g~~~~~  285 (288)
                      |+|+|+. |||+|+|+|+|+|++++++||+||++|+|+||+||+.+.
T Consensus       180 F~~~ks~-y~l~d~I~G~I~f~~s~i~Ik~iel~LiR~Et~~~~~~~  225 (341)
T 2fau_A          180 FEYNKSK-YHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPST  225 (341)
T ss_dssp             EEESCSE-EETTCEEEEEEEEEEECSCEEEEEEEEEEEEEESCGGGC
T ss_pred             EEEcccc-ccCCCeEEEEEEEEEeccceEEEEEEEEEEEEEcCCCCe
Confidence            9999999 999999999999999999999999999999999998753

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A

Probab=100.00  E-value=3.1e-54  Score=409.90  Aligned_cols=216  Identities=69%  Similarity=1.158  Sum_probs=206.6

Q ss_pred             cCCceEEEEEeCCCCCceeEEEecCCCcEEEEEEEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEeeccCCeEE
Q psy9998           6 FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHE   85 (288)
Q Consensus         6 f~~~~~i~I~ld~e~~r~~v~~k~~~gk~~~~piy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~d~~~~~e   85 (288)
                      .|++|+|+|.|||+++|+++++++++|+++++|+|++||+|+|+|.|+++++|++++|+||+|++.|+++++|++++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvY~~GE~VsG~V~I~~~~~~k~l~h~GIki~~~G~~e~~~~~~~~~~   89 (340)
T 2r51_A           10 MGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQIELYYDRGNHHE   89 (340)
T ss_dssp             ---CEEEEEEETTTTTSCEEEEECTTSCEEEEEEEETBCCEEEEEEEEESSTTSCEEESCEEEEEEEEEEEGGGTTCCEE
T ss_pred             cCCCceEEEEECCCCccceEEeecCCCcEeecCcCCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEEEEEEEecCCCcEE
Confidence            58999999999999999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EEEEEEEeeCCCccCcCceeeEEEeccCcccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccC
Q psy9998          86 FVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDL  165 (288)
Q Consensus        86 f~~~~~eL~~pG~l~~~~~i~FeF~~vek~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~l  165 (288)
                      |++++++|++||+|+..++|||+|..++++||||+|.+++                              ||        
T Consensus        90 f~~~~~eL~~pG~L~~G~~fpF~F~lp~~l~eSy~G~~g~------------------------------Ir--------  131 (340)
T 2r51_A           90 FVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTGQNVK------------------------------LR--------  131 (340)
T ss_dssp             EEEEEEEEECSEEECSCEEEEEEECSBCCCSCCEECSSEE------------------------------EE--------
T ss_pred             EEEEEEEecCCCccCCCcEEeeEeCCCCCCCcCeEeeeEE------------------------------EE--------
Confidence            9999999999999996666999999999999999999999                              88        


Q ss_pred             CcchhhhccceeEeEEEEEEEEecCCceeeeeeeeccCcceeeeEEEeccccCCCCCCCceeeeCCccEEEEEEEecccc
Q psy9998         166 APTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCN  245 (288)
Q Consensus       166 tPT~~~v~~~Fsv~Y~l~lvl~de~~rryfk~~ei~~~~~k~~ef~v~~~~~~p~~~~~i~mevgie~~lhief~y~k~~  245 (288)
                                    |+|+++|.    |++       +|++++.||||+.+.++|+++.||+||+|++|||||+|+|+|+.
T Consensus       132 --------------Y~vkv~i~----Rp~-------~di~~~~eF~V~~~~~~p~~~~pIk~Evgi~~cl~Ie~~~~ks~  186 (340)
T 2r51_A          132 --------------YFLRATIS----RRL-------NDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSK  186 (340)
T ss_dssp             --------------EEEEEEEC----CSS-------CCEEEEEEEEEECCCCCCCCCCCEEEEEEETTTEEEEEEESCSE
T ss_pred             --------------EEEEEEEE----ecC-------CCceEEEEEEEEeCCCCCccCCCEeccccCCceEEEEEEECccc
Confidence                          99999999    998       39999999999999889999999999999999999999999999


Q ss_pred             ceeecceEEeEEEEEEeecceeEEEEEEEEEEeeccCCce
Q psy9998         246 TWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFL  285 (288)
Q Consensus       246 ~~~l~d~i~G~i~f~l~~~~ik~mei~i~r~Et~g~~~~~  285 (288)
                       ||++|+|+|+|+|++++++||+||++|+|+||+|++.+.
T Consensus       187 -y~lgd~I~G~I~f~~s~i~Ik~iel~LiR~Et~~~~~~~  225 (340)
T 2r51_A          187 -YHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNV  225 (340)
T ss_dssp             -EETTCEEEEEEEEEEECSCEEEEEEEEEEEEEEEETTEE
T ss_pred             -ccCCCeEEEEEEEEEeeceeEEEEEEEEEEEEEecCCCe
Confidence             999999999999999999999999999999999999764

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}

Probab=99.94  E-value=1e-26  Score=221.21  Aligned_cols=197  Identities=42%  Similarity=0.618  Sum_probs=137.2

Q ss_pred             CCceEEEEEeCCCCCceeEEEecC-CCcEEEEE-----------EEecCCceeeEEEE--EECCCCceeeEecEEEEEEE
Q psy9998           7 GQSADIEIKLDGTDTRKLADIKSD-DGKKERFY-----------LYYDGESVTGQVNI--VLKKHGSKLEHQGIKIEFIG   72 (288)
Q Consensus         7 ~~~~~i~I~ld~e~~r~~v~~k~~-~gk~~~~p-----------iy~dge~V~G~V~I--~~~~~Gk~leH~GI~veliG   72 (288)
                      |......++.+||...++|.++.+ +||+.+|.           ++++.....-.+..  ++.+||+.-+-.-+.++|..
T Consensus        36 ~~~~~~~vY~~GE~VsG~V~I~~~~~gk~l~h~GIki~~~G~~e~~~~~~~~~~fls~~~eL~~~G~L~~g~~fpF~F~~  115 (341)
T 2fau_A           36 GKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQ  115 (341)
T ss_dssp             SCEEEEEEECTTCCEEEEEEEEESSSSCCEEESCEEEEEEEEEEECSTTCCEEEEEEEEEEEECSEEECSCEEEEEEECS
T ss_pred             CceeccCcCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEEEEEEEecCCCcEEEEEEEEEEcCCCccCCCcEEeeEeCC
Confidence            456788999999999999999987 67766554           45565555444443  45556754333346777764


Q ss_pred             EEEEeeccCCe---------------------EEEEEEEEEeeCCCccCcCceeeEEEe-----ccCccccc--cccccc
Q psy9998          73 QIELYYDRGNH---------------------HEFVSLVKELARPGELIQNTTYKFEFL-----NVEKPYES--YTGSNV  124 (288)
Q Consensus        73 ~Ie~~~d~~~~---------------------~ef~~~~~eL~~pG~l~~~~~i~FeF~-----~vek~yES--Y~G~~V  124 (288)
                       ++..|+++.+                     .+...+|..+..+...+.  +++|+..     +++++|.+  |+..++
T Consensus       116 -~~~~~eSy~G~~~~IrY~vrv~i~R~~~di~~~~eF~V~~~~~~p~~~~--pi~~evgied~L~ieF~~~ks~y~l~d~  192 (341)
T 2fau_A          116 -VEKPYESYIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNN--SIKMEVGIEDXLHIEFEYNKSKYHLKDV  192 (341)
T ss_dssp             -CCCCSCCEECSSEEEEEEEEEEECCSSSCEEEEEEEEECCCBCCCCCCC--CEEEEEEETTTEEEEEEESCSEEETTCE
T ss_pred             -CCCCCcceEeeEEEEEEEEEEEEEecCcceeEEEEEEEEeCCCCCCCCC--CeEEEEeccccEEEEEEEccccccCCCe
Confidence             3434443333                     344555565555444433  5777763     45556654  655552


Q ss_pred             c--------------------------cCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeE
Q psy9998         125 F--------------------------TPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSV  178 (288)
Q Consensus       125 r--------------------------~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv  178 (288)
                      =                          +.+++..+|++++++||||||+|+||++|||||+|++++||||++|++++|||
T Consensus       193 I~G~I~f~~s~i~Ik~iel~LiR~Et~~~~~~~~~e~~~i~k~eImDG~p~rge~IPirl~Lp~~~l~PT~~~~~~~fsV  272 (341)
T 2fau_A          193 IVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSV  272 (341)
T ss_dssp             EEEEEEEEEECSCEEEEEEEEEEEEEESCGGGCEEEEEEEEEEECCCC------CEEEEEESTTTCCCCCEEEEETTEEE
T ss_pred             EEEEEEEEEeccceEEEEEEEEEEEEEcCCCCeeeEEEEEEEEEEeCCCccCCCEEEEEEEcCCCCCCCcchhcCCeEEE
Confidence            1                          02456788999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEecCCceeeeeeeeccCcce
Q psy9998         179 KYFLNLVLMDEEDRRYFKQQVFTPNLIK  206 (288)
Q Consensus       179 ~Y~l~lvl~de~~rryfk~~ei~~~~~k  206 (288)
                      +|+|+|+|+|++||||||||||+....+
T Consensus       273 ~Y~Lnlvlvde~~rryfk~~EI~L~R~~  300 (341)
T 2fau_A          273 RYFLNLVLVDEEDRRYFKQQEIILWRKA  300 (341)
T ss_dssp             EEEEEEEEEETTCCEEEEEEEEEEECBC
T ss_pred             EEEEEEEEEeCCCCeeeeeeEEEEEECC
Confidence            9999999999999999999998765544

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A

Probab=99.92  E-value=2.1e-24  Score=205.18  Aligned_cols=197  Identities=45%  Similarity=0.674  Sum_probs=140.5

Q ss_pred             CCceEEEEEeCCCCCceeEEEecC-CCcEEEEE-----------EEecCCceeeEEEE--EECCCCceeeEecEEEEEEE
Q psy9998           7 GQSADIEIKLDGTDTRKLADIKSD-DGKKERFY-----------LYYDGESVTGQVNI--VLKKHGSKLEHQGIKIEFIG   72 (288)
Q Consensus         7 ~~~~~i~I~ld~e~~r~~v~~k~~-~gk~~~~p-----------iy~dge~V~G~V~I--~~~~~Gk~leH~GI~veliG   72 (288)
                      |.....+++.+|+...++|.++.+ +|++.+|.           ++++.....-.+..  .+.+||+.-.-+-+.++|.-
T Consensus        36 ~~~~~~pvY~~GE~VsG~V~I~~~~~~k~l~h~GIki~~~G~~e~~~~~~~~~~f~~~~~eL~~pG~L~~G~~fpF~F~l  115 (340)
T 2r51_A           36 GKKEKYFLFYDGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTH  115 (340)
T ss_dssp             SCEEEEEEEETBCCEEEEEEEEESSTTSCEEESCEEEEEEEEEEEGGGTTCCEEEEEEEEEEECSEEECSCEEEEEEECS
T ss_pred             CcEeecCcCCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEEEEEEEecCCCcEEEEEEEEEecCCCccCCCcEEeeEeCC
Confidence            456788999999999999999988 77665554           45665555554443  44445543222226666642


Q ss_pred             EEEEeeccCCe---------------------EEEEEEEEEeeCCCccCcCceeeEEE-----eccCccccc--cccccc
Q psy9998          73 QIELYYDRGNH---------------------HEFVSLVKELARPGELIQNTTYKFEF-----LNVEKPYES--YTGSNV  124 (288)
Q Consensus        73 ~Ie~~~d~~~~---------------------~ef~~~~~eL~~pG~l~~~~~i~FeF-----~~vek~yES--Y~G~~V  124 (288)
                       .+..|+++.+                     .+...+|..+..+.+++.  ++++|.     .+++..|.+  |+-.++
T Consensus       116 -p~~l~eSy~G~~g~IrY~vkv~i~Rp~~di~~~~eF~V~~~~~~p~~~~--pIk~Evgi~~cl~Ie~~~~ks~y~lgd~  192 (340)
T 2r51_A          116 -VEKPYESYTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNS--SIKMEVGIEDCLHIEFEYNKSKYHLKDV  192 (340)
T ss_dssp             -BCCCSCCEECSSEEEEEEEEEEECCSSCCEEEEEEEEEECCCCCCCCCC--CEEEEEEETTTEEEEEEESCSEEETTCE
T ss_pred             -CCCCCcCeEeeeEEEEEEEEEEEEecCCCceEEEEEEEEeCCCCCccCC--CEeccccCCceEEEEEEECcccccCCCe
Confidence             2222222222                     344555666655555543  566665     345555654  654441


Q ss_pred             c--------------------------cCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeE
Q psy9998         125 F--------------------------TPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSV  178 (288)
Q Consensus       125 r--------------------------~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv  178 (288)
                      -                          ..+++..+|+++|++||||||+|+||++|||||+|++++||||+.|++++|||
T Consensus       193 I~G~I~f~~s~i~Ik~iel~LiR~Et~~~~~~~~~e~~~i~k~eImdG~p~rge~IPirl~Lp~~~l~PT~~~~~~~fsV  272 (340)
T 2r51_A          193 IVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSV  272 (340)
T ss_dssp             EEEEEEEEEECSCEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEESCCCTTCEEEEEEEGGGSCCCCCEEEETTTEEE
T ss_pred             EEEEEEEEEeeceeEEEEEEEEEEEEEecCCCeeEEEEEEEEEEEecCCccCCCEEEEEEECCCCCCCCCccccCCeEEE
Confidence            1                          02567788999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEecCCceeeeeeeeccCcce
Q psy9998         179 KYFLNLVLMDEEDRRYFKQQVFTPNLIK  206 (288)
Q Consensus       179 ~Y~l~lvl~de~~rryfk~~ei~~~~~k  206 (288)
                      +|+|+|+|+|+++|+||||++|+....+
T Consensus       273 ~Y~Lnlvl~~e~~~~~~kq~pI~L~R~~  300 (340)
T 2r51_A          273 RYYLNLVLIDEEERRYFKQQEVVLWRKG  300 (340)
T ss_dssp             EEEEEEEEEETTCCEEEEEEEEEEECCC
T ss_pred             EEEEEEEEEeCCCcEEEEEeeEEEEECC
Confidence            9999999999999999999999875544

>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A

Probab=94.90  E-value=1.6  Score=41.82  Aligned_cols=43  Identities=16%  Similarity=0.180  Sum_probs=32.5

Q ss_pred             EEEEEEEeccccceeecceEEeEEEEEE-eecceeEEEEEEEEEE
Q psy9998         234 CLHIEFEYNKCNTWNLKDVIVGKIYFLL-VRIKIKHMEIAIIKRE  277 (288)
Q Consensus       234 ~lhief~y~k~~~~~l~d~i~G~i~f~l-~~~~ik~mei~i~r~E  277 (288)
                      -+|++..++|+- |.--+.|--.+...- ....|+.++++|++.-
T Consensus       196 ~l~l~~sldk~~-Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L~Q~~  239 (393)
T 1g4m_A          196 PLHLEASLDKEI-YYHGEPISVNVHVTNNTNKTVKKIKISVRQYA  239 (393)
T ss_dssp             CEEEEEEESCSE-EETTCCEEEEEEEEECSSCCEEEEEEEEEEEE
T ss_pred             CEEEEEEECCce-EcCCCEEEEEEEEEcCCCCEEeEEEEEEEEEE
Confidence            388999999988 988888865555543 3567888888888865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00