ECOD: domain e1a79D2

Domain ID e1a79D2

A: a/b three-layered sandwiches
X: Restriction endonuclease-like
H: tRNA-intron endonuclease catalytic domain-like
T: tRNA-intron endonuclease catalytic domain-like
F: tRNA_int_endo

UID:	000114348
Type:	Automatic domain
Parent:	e1a79A2
Range:	D:83-179
Ligands:	AU
PDB:	1a79
PDB Description:	TRNA ENDONUCLEASE
UniProt:	Q58819
Hsap BLAST neighbor:	Q9BSV6
Species:	Methanocaldococcus jannaschii

Domains in the same chain:

Download Pymol

e1a79D1	D:9-82	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e1a79D2	D:83-179	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like

Domains in the same PDB:

e1a79A1	A:9-82	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e1a79A2	A:83-179	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e1a79B1	B:9-82	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e1a79B2	B:83-179	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e1a79C1	C:9-82	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e1a79C2	C:83-179	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e1a79D1	D:9-82	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e1a79D2	D:83-179	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like

Structural contacts of domain e1a79D2 of H-group "tRNA-intron endonuclease catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1a79C2	D:x,y,z->C:X,Y,Z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e1a79A2	D:x,y,z->A:X,Y,Z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e1a79A1	D:x,y,z->A:X,Y,Z	tRNA-intron endonuclease N-terminal domain-like	Interaction Interface Pymol
e1a79B1	D:-X+2,Y-1/2,-Z+1/2->B:x,y,z	tRNA-intron endonuclease N-terminal domain-like	Interaction Interface Pymol
e1a79B2	D:-X+2,Y-1/2,-Z+1/2->B:x,y,z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e1a79A1	D:X-1,Y,Z->A:x,y,z	tRNA-intron endonuclease N-terminal domain-like	Interaction Interface Pymol
e1a79A2	D:-X+2,Y-1/2,-Z+1/2->A:x,y,z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol