Domain ID e1afvB1

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  • A: alpha bundles
  • X: Retrovirus capsid protein
  • H: Retrovirus capsid protein N-terminal domain
  • T: Retrovirus capsid protein N-terminal domain
  • F: Gag_p24
UID: 000056891
Type: Automatic domain
Parent: e2pxrC1
Range: B:1-145
PDB: 1afv
PDB Description: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN
UniProt: P12497
Species: Human immunodeficiency virus 1

Structure of domain e1afvB1

Domains in the same chain:

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e1afvB1 B:1-145 Retrovirus capsid protein Retrovirus capsid protein N-terminal domain Retrovirus capsid protein N-terminal domain

Domains in the same PDB:

e1afvA1 A:1-145 Retrovirus capsid protein Retrovirus capsid protein N-terminal domain Retrovirus capsid protein N-terminal domain
e1afvB1 B:1-145 Retrovirus capsid protein Retrovirus capsid protein N-terminal domain Retrovirus capsid protein N-terminal domain
e1afvH1 H:1-120 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvH2 H:121-220 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvK1 K:1-120 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvK2 K:121-220 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvL1 L:1-111 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvL2 L:113-217 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvM1 M:1-111 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvM2 M:113-217 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e1afvB1 of H-group "Retrovirus capsid protein N-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1afvA1 B:x,y,z->A:X,Y,Z Retrovirus capsid protein N-terminal domain Interaction Interface Pymol
e1afvM1 B:X,Y,Z->M:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1afvK1 B:X,Y,Z->K:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1afvL2 B:-X+1/2,-Y,Z-1/2->L:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1afvL2 B:-X+1,Y,-Z+1->L:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1afvK2 B:-X+1,Y,-Z+2->K:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1afvK2 B:x,y,z->K:-X+1/2,-Y+1,Z-1/2 Immunoglobulin-related Interaction Interface Pymol