Domain ID e1afvM1

Download files:
  • A: beta sandwiches
  • X: Immunoglobulin-like beta-sandwich
  • H: Immunoglobulin-related
  • T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
  • F: V-set
UID: 000033951
Type: Automatic domain
Parent: e1mjuL1
Range: M:1-111
Ligands: PB
PDB: 1afv
PDB Description: ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN)
Hsap BLAST neighbor: P04432
Species: Mus musculus

Structure of domain e1afvM1

Domains in the same chain:

Download Pymol

e1afvM1 M:1-111 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvM2 M:113-217 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e1afvA1 A:1-145 Retrovirus capsid protein Retrovirus capsid protein N-terminal domain Retrovirus capsid protein N-terminal domain
e1afvB1 B:1-145 Retrovirus capsid protein Retrovirus capsid protein N-terminal domain Retrovirus capsid protein N-terminal domain
e1afvH1 H:1-120 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvH2 H:121-220 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvK1 K:1-120 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvK2 K:121-220 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvL1 L:1-111 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvL2 L:113-217 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvM1 M:1-111 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1afvM2 M:113-217 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e1afvM1 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1afvK1 M:X,Y,Z->K:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1afvB1 M:x,y,z->B:X,Y,Z Retrovirus capsid protein N-terminal domain Interaction Interface Pymol