Domain ID e1b0pB5

Download files:
  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: TPP_enzyme_C
UID: 001872750
Type: Automatic domain
Parent: e2c42A7
Range: B:786-882,B:955-1232
Ligands: CA MG SF4 TPP
PDB: 1b0p
PDB Description: PROTEIN (PYRUVATE-FERREDOXIN OXIDOREDUCTASE)
UniProt: P94692
Species: Desulfovibrio africanus

Structure of domain e1b0pB5

Domains in the same chain:

Download Pymol

e1b0pB4 B:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1b0pB2 B:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e1b0pB3 B:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e1b0pB1 B:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e1b0pB5 B:786-882,B:955-1232 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1b0pB6 B:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Domains in the same PDB:

e1b0pA4 A:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1b0pA2 A:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e1b0pA3 A:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e1b0pA1 A:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e1b0pA6 A:786-882,A:955-1232 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1b0pA5 A:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase
e1b0pB4 B:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1b0pB2 B:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e1b0pB3 B:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e1b0pB1 B:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e1b0pB5 B:786-882,B:955-1232 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1b0pB6 B:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Structural contacts of domain e1b0pB5 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

Sorry, the images are being generated.

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1b0pA4 B:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1b0pA3 B:x,y,z->A:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1b0pA6 B:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1b0pA1 B:x,y,z->A:X,Y,Z 4Fe-4S ferredoxin Interaction Interface Pymol
e1b0pB5 B:x,y,z->B:X-1/2,-Y-1/2,-Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1b0pB5 B:X-1/2,-Y-1/2,-Z->B:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1b0pA6 B:X-1/2,-Y-1/2,-Z->A:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol