ECOD: domain e2c42A7

Domain ID e2c42A7

A: a/b three-layered sandwiches
X: Thiamin diphosphate-binding fold (THDP-binding)
H: Thiamin diphosphate-binding fold (THDP-binding)
T: Thiamin diphosphate-binding fold (THDP-binding)
F: TPP_enzyme_C

UID:	001866727
Type:	Manual and representative domain
Range:	A:786-882,A:955-1232
Ligands:	CA MG PYR SF4 TPP
PDB:	2c42
PDB Description:	PYRUVATE-FERREDOXIN OXIDOREDUCTASE
UniProt:	P94692
Species:	Desulfovibrio africanus

Domains in the same chain:

Download Pymol

e2c42A4	A:2-258	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2c42A2	A:259-415	TK C-terminal domain-like	TK C-terminal domain-like	TK C-terminal domain-like
e2c42A3	A:416-668	P-loop domains-like	P-loop domains-related	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c42A1	A:669-785	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2c42A7	A:786-882,A:955-1232	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2c42A6	A:883-954	Bromodomain-like	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Domains in the same PDB:

e2c42A4	A:2-258	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2c42A2	A:259-415	TK C-terminal domain-like	TK C-terminal domain-like	TK C-terminal domain-like
e2c42A3	A:416-668	P-loop domains-like	P-loop domains-related	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c42A1	A:669-785	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2c42A7	A:786-882,A:955-1232	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2c42A6	A:883-954	Bromodomain-like	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase
e2c42B4	B:2-258	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2c42B2	B:259-415	TK C-terminal domain-like	TK C-terminal domain-like	TK C-terminal domain-like
e2c42B3	B:416-668	P-loop domains-like	P-loop domains-related	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c42B1	B:669-785	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2c42B6	B:786-882,B:955-1232	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2c42B5	B:883-954	Bromodomain-like	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Structural contacts of domain e2c42A7 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2c42B4	A:X,Y,Z->B:x,y,z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e2c42B1	A:X,Y,Z->B:x,y,z	4Fe-4S ferredoxin	Interaction Interface Pymol
e2c42B6	A:X,Y,Z->B:x,y,z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e2c42B3	A:X,Y,Z->B:x,y,z	P-loop domains-related	Interaction Interface Pymol
e2c42B5	A:X-1/2,-Y-1/2,-Z->B:x,y,z	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase	Interaction Interface Pymol
e2c42B5	A:X-1,Y,Z->B:x,y,z	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase	Interaction Interface Pymol