ECOD: domain e1bj1V1

Domain ID e1bj1V1

A: few secondary structure elements
X: Cystine-knot cytokines
H: Cystine-knot cytokines
T: Cystine-knot cytokines
F: PDGF

UID:	000090600
Type:	Automatic domain
Parent:	e1pdgA1
Range:	V:14-107
Ligands:	SO4
PDB:	1bj1
PDB Description:	Vascular endothelial growth factor A
UniProt:	P15692
Hsap BLAST neighbor:	P15692
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e1bj1V1	V:14-107	Cystine-knot cytokines	Cystine-knot cytokines	Cystine-knot cytokines

Domains in the same PDB:

e1bj1H1	H:1-123	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1bj1H2	H:124-224	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1bj1J1	J:1-107	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1bj1J2	J:108-213	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1bj1K1	K:1-123	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1bj1K2	K:124-224	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1bj1L1	L:1-107	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1bj1L2	L:108-213	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1bj1V1	V:14-107	Cystine-knot cytokines	Cystine-knot cytokines	Cystine-knot cytokines
e1bj1W1	W:14-107	Cystine-knot cytokines	Cystine-knot cytokines	Cystine-knot cytokines

Structural contacts of domain e1bj1V1 of H-group "Cystine-knot cytokines":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1bj1W1	V:X,Y,Z->W:x,y,z	Cystine-knot cytokines	Interaction Interface Pymol
e1bj1K1	V:X,Y,Z->K:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e1bj1J1	V:-X+1,Y-1/2,-Z->J:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e1bj1J1	V:x,y,z->J:X,Y,Z	Immunoglobulin-related	Interaction Interface Pymol
e1bj1K2	V:X,Y-1,Z->K:x,y,z	Immunoglobulin-related	Interaction Interface Pymol