ECOD: domain e1cc1L2

Domain ID e1cc1L2

A: alpha complex topology
X: alpha-helical domain in nickel-iron hydrogenase, large subunit
H: alpha-helical domain in nickel-iron hydrogenase, large subunit
T: alpha-helical domain in nickel-iron hydrogenase, large subunit
F: NiFeSe_Hases

UID:	000004899
Type:	Manual and representative domain
Range:	L:92-278,L:329-408
Ligands:	H2S SF4
PDB:	1cc1
PDB Description:	HYDROGENASE (LARGE SUBUNIT)
UniProt:	P13065
Species:	Desulfomicrobium baculatum

Domains in the same chain:

Download Pymol

e1cc1L3	L:12-48,L:458-498	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1cc1L4	L:49-91,L:409-457	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1cc1L2	L:92-278,L:329-408	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e1cc1L1	L:279-328	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit

Domains in the same PDB:

e1cc1L3	L:12-48,L:458-498	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1cc1L4	L:49-91,L:409-457	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1cc1L2	L:92-278,L:329-408	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e1cc1L1	L:279-328	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit
e1cc1S2	S:6-203	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e1cc1S1	S:204-281	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Structural contacts of domain e1cc1L2 of H-group "alpha-helical domain in nickel-iron hydrogenase, large subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1cc1S1	L:x,y,z->S:X,Y,Z	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Interaction Interface Pymol
e1cc1S2	L:x,y,z->S:X,Y,Z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e1cc1S2	L:x,y,z->S:X,Y-1,Z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e1cc1L3	L:x,y,z->L:-X+1/2,-Y,Z-1/2	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Interaction Interface Pymol
e1cc1L4	L:-X+1/2,-Y,Z-1/2->L:x,y,z	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Interaction Interface Pymol
e1cc1L4	L:X-1/2,-Y+1/2,-Z+1->L:x,y,z	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Interaction Interface Pymol
e1cc1S2	L:X-1/2,-Y+1/2,-Z+1->S:x,y,z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e1cc1S2	L:x,y,z->S:-X+1,Y-1/2,-Z+1/2	Class I glutamine amidotransferase-like	Interaction Interface Pymol