Domain ID e1cc1L3

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  • A: a+b two layers
  • X: FAD-linked reductases, C-terminal domain-like
  • H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • F: NiFeSe_Hases
UID: 000006742
Type: Manual and representative domain
Range: L:12-48,L:458-498
Ligands: FCO FE2 NI
PDB: 1cc1
PDB Description: HYDROGENASE (LARGE SUBUNIT)
UniProt: P13065
Species: Desulfomicrobium baculatum

Structure of domain e1cc1L3

Domains in the same chain:

e1cc1L3 L:12-48,L:458-498 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1cc1L4 L:49-91,L:409-457 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1cc1L2 L:92-278,L:329-408 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1cc1L1 L:279-328 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Domains in the same PDB:

e1cc1L3 L:12-48,L:458-498 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1cc1L4 L:49-91,L:409-457 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1cc1L2 L:92-278,L:329-408 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1cc1L1 L:279-328 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e1cc1S2 S:6-203 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1cc1S1 S:204-281 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Structural contacts of domain e1cc1L3 of H-group "Ni-Fe binding domain in nickel-iron hydrogenase large subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1cc1S2 L:x,y,z->S:X,Y,Z Class I glutamine amidotransferase-like Interaction Interface Pymol
e1cc1L4 L:-X+1/2,-Y,Z-1/2->L:x,y,z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e1cc1L2 L:-X+1/2,-Y,Z-1/2->L:x,y,z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol
e1cc1S1 L:-X+1/2,-Y,Z-1/2->S:x,y,z Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Interaction Interface Pymol