ECOD: domain e1e8cA2

Domain ID e1e8cA2

A: a/b three-layered sandwiches
X: MurD-like peptide ligases, peptide-binding domain
H: MurD-like peptide ligases, peptide-binding domain
T: MurD-like peptide ligases, peptide-binding domain
F: Mur_ligase_C

UID:	000010631
Type:	Manual and representative domain
Range:	A:338-497
Ligands:	API
PDB:	1e8c
PDB Description:	UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE
UniProt:	P22188
Species:	Escherichia coli

Domains in the same chain:

Download Pymol

e1e8cA3	A:3-103	MurF and HprK N-domain-like	MurF and HprK N-domain-like	MurF and HprK N-domain-like
e1e8cA1	A:104-337	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1e8cA2	A:338-497	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e1e8cA3	A:3-103	MurF and HprK N-domain-like	MurF and HprK N-domain-like	MurF and HprK N-domain-like
e1e8cA1	A:104-337	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1e8cA2	A:338-497	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain
e1e8cB3	B:3-103	MurF and HprK N-domain-like	MurF and HprK N-domain-like	MurF and HprK N-domain-like
e1e8cB1	B:104-337	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1e8cB2	B:338-497	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e1e8cA2 of H-group "MurD-like peptide ligases, peptide-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1e8cA2	A:x,y,z->A:X,-Y+1,-Z+1	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e1e8cA1	A:x,y,z->A:X,-Y+1,-Z+1	P-loop domains-related	Interaction Interface Pymol
e1e8cA3	A:x,y,z->A:X,-Y+1,-Z+1	MurF and HprK N-domain-like	Interaction Interface Pymol
e1e8cA3	A:X,-Y+1,-Z+1->A:x,y,z	MurF and HprK N-domain-like	Interaction Interface Pymol
e1e8cA1	A:X,-Y+1,-Z+1->A:x,y,z	P-loop domains-related	Interaction Interface Pymol
e1e8cA2	A:X,-Y+1,-Z+1->A:x,y,z	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e1e8cB1	A:X,Y,Z->B:x,y,z	P-loop domains-related	Interaction Interface Pymol
e1e8cB3	A:x,y,z->B:X-1/2,Y+1/2,Z	MurF and HprK N-domain-like	Interaction Interface Pymol