ECOD: domain e1ej6D1

Domain ID e1ej6D1

A: alpha complex topology
X: Core protein VP6
H: Core protein VP6
T: Core protein VP6
F: Sigma_1_2

UID:	000466380
Type:	Automatic domain
Parent:	e3iylU1
Range:	D:2-418
PDB:	1ej6
PDB Description:	SIGMA2
UniProt:	P11314
Species:	Reovirus sp.

Domain
In chain context
In PDB context

Structure of domain e1ej6D1

Domains in the same chain:

Download Pymol

e1ej6D1	D:2-418	Core protein VP6	Core protein VP6	Core protein VP6

Domains in the same PDB:

e1ej6A5	A:2-141	Rotavirus NSP2 fragment, N-terminal domain	Rotavirus NSP2 fragment, N-terminal domain	Rotavirus NSP2 fragment, N-terminal domain
e1ej6A4	A:140-388	HIT-like	HIT-related	HIT-related
e1ej6A2	A:389-689	Rossmann-like	Rossmann-related	S-adenosyl-L-methionine-dependent methyltransferases
e1ej6A6	A:687-798	ferredoxin-like domain in VP1	ferredoxin-like domain in VP1	ferredoxin-like domain in VP1
e1ej6A3	A:799-1024	Rossmann-like	Rossmann-related	S-adenosyl-L-methionine-dependent methyltransferases
e1ej6A7	A:1025-1123	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1ej6A1	A:1124-1223	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1ej6A8	A:1224-1289	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1ej6B1	B:241-1275	Inner layer core protein p3-related	Inner layer core protein p3-related	Inner layer core protein p3-related
e1ej6C1	C:1-12,C:40-1275	Inner layer core protein p3-related	Inner layer core protein p3-related	Inner layer core protein p3-related
e1ej6D1	D:2-418	Core protein VP6	Core protein VP6	Core protein VP6
e1ej6E1	E:2-418	Core protein VP6	Core protein VP6	Core protein VP6

Structural contacts of domain e1ej6D1 of H-group "Core protein VP6":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1ej6B1	D:x,y,z->B:X,Y,Z	Inner layer core protein p3-related	Interaction Interface Pymol
e1ej6A4	D:x,y,z->A:X,Y,Z	HIT-related	Interaction Interface Pymol