Domain ID e1ffyA1

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: acid protease
  • F: tRNA-synt_1_2
UID: 000000268
Type: Manual and representative domain
Range: A:201-394
Ligands: ZN
PDB: 1ffy
PDB Description: ISOLEUCYL-TRNA SYNTHETASE
UniProt: P41972
Hsap BLAST neighbor: Q9NSE4
Species: Staphylococcus aureus

Structure of domain e1ffyA1

Domains in the same chain:

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e1ffyA6 A:1-175,A:524-585 HUP domain-like HUP domains HUP domains
e1ffyA3 A:176-200,A:395-457 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ffyA1 A:201-394 cradle loop barrel RIFT-related acid protease
e1ffyA4 A:458-523 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ffyA2 A:586-790 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ffyA7 A:791-881 A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ffyA5 A:882-917 Glucocorticoid receptor-like LIM domain-like Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

Domains in the same PDB:

e1ffyA6 A:1-175,A:524-585 HUP domain-like HUP domains HUP domains
e1ffyA3 A:176-200,A:395-457 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ffyA1 A:201-394 cradle loop barrel RIFT-related acid protease
e1ffyA4 A:458-523 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ffyA2 A:586-790 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ffyA7 A:791-881 A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ffyA5 A:882-917 Glucocorticoid receptor-like LIM domain-like Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

Structural contacts of domain e1ffyA1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ffyA1 A:X-1/2,-Y+3/2,-Z+1->A:x,y,z RIFT-related Interaction Interface Pymol
e1ffyA1 A:X-1/2,-Y+3/2,-Z+1->A:x,y,z RIFT-related Interaction Interface Pymol
e1ffyA5 A:x,y,z->A:-X+3/2,-Y+2,Z-1/2 LIM domain-like Interaction Interface Pymol
e1ffyA7 A:x,y,z->A:-X+3/2,-Y+2,Z-1/2 A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Interaction Interface Pymol