Domain ID e1fjgD1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4,S4
UID: 001549824
Type: Automatic domain
Parent: e4v4vAD1
Range: D:2-209
Ligands: MG ZN
PDB: 1fjg
PDB Description: 30S RIBOSOMAL PROTEIN S4
UniProt: P80373
Species: Thermus thermophilus

Structure of domain e1fjgD1

Domains in the same chain:

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e1fjgD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif

Domains in the same PDB:

e1fjgB1 B:7-243 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e1fjgC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1fjgC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1fjgD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1fjgE1 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1fjgE2 E:74-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1fjgF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1fjgG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1fjgH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1fjgH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1fjgI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1fjgJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1fjgK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1fjgL1 L:5-122 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1fjgM1 M:2-126 HhH/H2TH H2TH H2TH
e1fjgN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1fjgO1 O:3-87 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1fjgP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1fjgQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1fjgR1 R:19-88 HTH HTH tri-helical
e1fjgS1 S:2-85 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e1fjgT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1fjgD1 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1fjgE1 D:X,Y,Z->E:x,y,z dsRNA-binding domain-like Interaction Interface Pymol
e1fjgE2 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1fjgH1 D:Y,X,-Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol