Domain ID e1frvC1

Download files:
  • A: few secondary structure elements
  • X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
  • H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
  • T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
  • F: NiFe_hyd_SSU_C
UID: 000092201
Type: Automatic domain
Parent: e1ublS1
Range: C:181-263
Ligands: F3S SF4
PDB: 1frv
PDB Description: HYDROGENASE
UniProt: P12943
Species: Desulfovibrio gigas

Structure of domain e1frvC1

Domains in the same chain:

e1frvC2 C:3-180 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1frvC1 C:181-263 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Domains in the same PDB:

e1frvA2 A:3-180 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1frvA1 A:181-263 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e1frvB3 B:7-42,B:495-535 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1frvB4 B:43-85,B:446-494 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1frvB2 B:86-313,B:365-445 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1frvB1 B:314-364 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e1frvC2 C:3-180 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1frvC1 C:181-263 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e1frvD3 D:7-42,D:495-535 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1frvD4 D:43-85,D:446-494 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1frvD2 D:86-313,D:365-445 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1frvD1 D:314-364 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Structural contacts of domain e1frvC1 of H-group "Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1frvD4 C:X,Y,Z->D:x,y,z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e1frvD2 C:X,Y,Z->D:x,y,z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol
e1frvA2 C:x,y,z->A:X-1,Y,Z-1 Class I glutamine amidotransferase-like Interaction Interface Pymol
e1frvA1 C:x,y,z->A:X,Y,Z Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Interaction Interface Pymol
e1frvB3 C:x,y,z->B:X-1,Y,Z-1 Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol