ECOD: domain e1gg4B2

Domain ID e1gg4B2

A: a/b three-layered sandwiches
X: MurD-like peptide ligases, peptide-binding domain
H: MurD-like peptide ligases, peptide-binding domain
T: MurD-like peptide ligases, peptide-binding domain
F: Mur_ligase_C

UID:	000110186
Type:	Automatic domain
Parent:	e1e8cA2
Range:	B:813-947
PDB:	1gg4
PDB Description:	UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE-D-ALANYL-D-ALANYL LIGASE
UniProt:	P11880
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e1gg4B2

Domains in the same chain:

Download Pymol

e1gg4B3	B:501-598	MurF and HprK N-domain-like	MurF and HprK N-domain-like	MurF and HprK N-domain-like
e1gg4B1	B:599-812	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1gg4B2	B:813-947	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e1gg4A3	A:1-98	MurF and HprK N-domain-like	MurF and HprK N-domain-like	MurF and HprK N-domain-like
e1gg4A1	A:99-312	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1gg4A2	A:313-447	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain
e1gg4B3	B:501-598	MurF and HprK N-domain-like	MurF and HprK N-domain-like	MurF and HprK N-domain-like
e1gg4B1	B:599-812	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1gg4B2	B:813-947	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e1gg4B2 of H-group "MurD-like peptide ligases, peptide-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1gg4A2	B:x,y,z->A:X-Y+2,X+1,Z+1/6	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e1gg4A3	B:x,y,z->A:X-Y+2,X+1,Z+1/6	MurF and HprK N-domain-like	Interaction Interface Pymol