Domain ID e1gkpB2

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Amidohydro_1
UID: 000095716
Type: Automatic domain
Parent: e1gkpA2
Range: B:55-389
Ligands: SO4 ZN
PDB: 1gkp
PDB Description: HYDANTOINASE
UniProt: Q7SIE9
Hsap BLAST neighbor: Q14117
Species: Thermus sp.

Structure of domain e1gkpB2

Domains in the same chain:

e1gkpB1 B:2-54,B:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpB2 B:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels

Domains in the same PDB:

e1gkpA1 A:2-54,A:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpA2 A:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gkpB1 B:2-54,B:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpB2 B:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gkpC1 C:2-54,C:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpC2 C:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gkpD1 D:2-54,D:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpD2 D:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gkpE1 E:2-54,E:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpE2 E:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gkpF1 F:2-54,F:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpF2 F:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels

Structural contacts of domain e1gkpB2 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1gkpA1 B:x,y,z->A:X,Y,Z Composite domain of metallo-dependent hydrolases Interaction Interface Pymol
e1gkpA2 B:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol
e1gkpA2 B:x,y,z->A:-X,Y,-Z+1/2 TIM barrels Interaction Interface Pymol
e1gkpC1 B:x,y,z->C:-X+1/2,-Y+1/2,Z-1/2 Composite domain of metallo-dependent hydrolases Interaction Interface Pymol
e1gkpC2 B:-X+1/2,Y-1/2,-Z+1/2->C:x,y,z TIM barrels Interaction Interface Pymol