Domain ID e1gkpD1

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  • A: beta sandwiches
  • X: Composite domain of metallo-dependent hydrolases
  • H: Composite domain of metallo-dependent hydrolases
  • T: Composite domain of metallo-dependent hydrolases
  • F: Unmapped domains
UID: 000029158
Type: Automatic domain
Parent: e1gkpA1
Range: D:2-54,D:390-459
Ligands: EPE
PDB: 1gkp
PDB Description: HYDANTOINASE
UniProt: Q7SIE9
Hsap BLAST neighbor: Q16555
Species: Thermus sp.

Structure of domain e1gkpD1

Domains in the same chain:

e1gkpD1 D:2-54,D:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpD2 D:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels

Domains in the same PDB:

e1gkpA1 A:2-54,A:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpA2 A:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gkpB1 B:2-54,B:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpB2 B:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gkpC1 C:2-54,C:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpC2 C:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gkpD1 D:2-54,D:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpD2 D:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gkpE1 E:2-54,E:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpE2 E:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gkpF1 F:2-54,F:390-459 Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases
e1gkpF2 F:55-389 TIM beta/alpha-barrel TIM barrels TIM barrels

Structural contacts of domain e1gkpD1 of H-group "Composite domain of metallo-dependent hydrolases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1gkpC1 D:x,y,z->C:X,Y,Z Composite domain of metallo-dependent hydrolases Interaction Interface Pymol
e1gkpC2 D:x,y,z->C:X,Y,Z TIM barrels Interaction Interface Pymol
e1gkpD2 D:x,y,z->D:-X,Y,-Z+3/2 TIM barrels Interaction Interface Pymol
e1gkpD2 D:-X,Y,-Z+3/2->D:x,y,z TIM barrels Interaction Interface Pymol
e1gkpA1 D:-X+1/2,-Y+1/2,Z-1/2->A:x,y,z Composite domain of metallo-dependent hydrolases Interaction Interface Pymol
e1gkpE2 D:x,y,z->E:X-1/2,-Y+1/2,-Z+1 TIM barrels Interaction Interface Pymol