ECOD: domain e1gqqA4

Domain ID e1gqqA4

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: MurCD/PglD N-terminal domain-like
F: Mur_ligase

UID:	001392096
Type:	Automatic domain
Parent:	e1j6uA1
Range:	A:18-106
PDB:	1gqq
PDB Description:	UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
UniProt:	P45066
Species:	Haemophilus influenzae

Domain
In chain context
In PDB context

Structure of domain e1gqqA4

Domains in the same chain:

Download Pymol

e1gqqA4	A:18-106	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e1gqqA2	A:107-321	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1gqqA3	A:322-475	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e1gqqA4	A:18-106	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e1gqqA2	A:107-321	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1gqqA3	A:322-475	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain
e1gqqB4	B:19-106	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e1gqqB2	B:107-321	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1gqqB3	B:322-475	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e1gqqA4 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1gqqB2	A:X,Y,Z->B:x,y,z	P-loop domains-related	Interaction Interface Pymol
e1gqqA3	A:X-1/2,-Y+1/2,-Z->A:x,y,z	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e1gqqB3	A:-X+2,Y-1/2,-Z+1/2->B:x,y,z	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol