Domain ID e1hnxD1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4,S4
UID: 001549856
Type: Automatic domain
Parent: e4v4vAD1
Range: D:2-209
Ligands: MG ZN
PDB: 1hnx
PDB Description: 30S RIBOSOMAL PROTEIN S4
UniProt: P80373
Species: Thermus thermophilus

Structure of domain e1hnxD1

Domains in the same chain:

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e1hnxD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif

Domains in the same PDB:

e1hnxB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e1hnxC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1hnxC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1hnxD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1hnxE1 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1hnxE2 E:74-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1hnxF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1hnxG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1hnxH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1hnxH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1hnxI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1hnxJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1hnxK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1hnxL1 L:5-122 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1hnxM1 M:2-126 HhH/H2TH H2TH H2TH
e1hnxN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1hnxO1 O:3-87 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1hnxP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1hnxQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1hnxR1 R:19-88 HTH HTH tri-helical
e1hnxS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e1hnxT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1hnxD1 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1hnxE2 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1hnxH1 D:Y,X,-Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol