Domain ID e1ihmA2

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  • A: beta barrels
  • X: cradle loop barrel
  • H: Capsid protein protrusion (P) domain
  • T: Capsid protein protrusion (P) domain
  • F: Calici_coat_C
UID: 001693513
Type: Manual and representative domain
Range: A:1229-1277,A:1407-1520
PDB: 1ihm
PDB Description: capsid protein
UniProt: Q83884
Species: Norwalk virus

Structure of domain e1ihmA2

Domains in the same chain:

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e1ihmA4 A:1029-1228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1ihmA2 A:1229-1277,A:1407-1520 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e1ihmA3 A:1278-1406 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain

Domains in the same PDB:

e1ihmA4 A:1029-1228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1ihmA2 A:1229-1277,A:1407-1520 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e1ihmA3 A:1278-1406 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e1ihmB1 B:2010-2228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1ihmB2 B:2229-2277,B:2407-2520 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e1ihmB3 B:2278-2406 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e1ihmC3 C:3029-3228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1ihmC1 C:3229-3277,C:3407-3520 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e1ihmC2 C:3278-3406 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain

Structural contacts of domain e1ihmA2 of H-group "Capsid protein protrusion (P) domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ihmB3 A:X,Y,Z->B:x,y,z Capsid protein protrusion (P) domain Interaction Interface Pymol
e1ihmB2 A:X,Y,Z->B:x,y,z Capsid protein protrusion (P) domain Interaction Interface Pymol