Domain ID e1ihmA4

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • F: Calici_coat
UID: 001693512
Type: Manual and representative domain
Range: A:1029-1228
PDB: 1ihm
PDB Description: capsid protein
UniProt: Q83884
Species: Norwalk virus

Structure of domain e1ihmA4

Domains in the same chain:

e1ihmA4 A:1029-1228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1ihmA2 A:1229-1277,A:1407-1520 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e1ihmA3 A:1278-1406 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain

Domains in the same PDB:

e1ihmA4 A:1029-1228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1ihmA2 A:1229-1277,A:1407-1520 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e1ihmA3 A:1278-1406 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e1ihmB1 B:2010-2228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1ihmB2 B:2229-2277,B:2407-2520 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e1ihmB3 B:2278-2406 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e1ihmC3 C:3029-3228 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1ihmC1 C:3229-3277,C:3407-3520 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e1ihmC2 C:3278-3406 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain

Structural contacts of domain e1ihmA4 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ihmB1 A:X,Y,Z->B:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e1ihmC3 A:X,Y,Z->C:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol