Domain ID e1ir2U1

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: RuBisCO, large subunit, small (N-terminal) domain
  • T: RuBisCO, large subunit, small (N-terminal) domain
  • F: RuBisCO_large_N
UID: 000065067
Type: Automatic domain
Parent: e5rubA1
Range: U:11-149
Ligands: CAP GOL MG
PDB: 1ir2
PDB Description: LARGE SUBUNIT OF RUBISCO
UniProt: P00877
Species: Chlamydomonas reinhardtii

Structure of domain e1ir2U1

Domains in the same chain:

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e1ir2U1 U:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2U2 U:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels

Domains in the same PDB:

e1ir211 1:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir221 2:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir231 3:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir241 4:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir251 5:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir261 6:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir271 7:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir281 8:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir2A1 A:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2A2 A:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2B1 B:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2B2 B:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2C1 C:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2C2 C:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2D1 D:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2D2 D:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2E1 E:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2E2 E:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2F1 F:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2F2 F:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2G1 G:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2G2 G:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2H1 H:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2H2 H:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2I1 I:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir2J1 J:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir2K1 K:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir2L1 L:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir2M1 M:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir2N1 N:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir2O1 O:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir2P1 P:1-132 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1ir2S1 S:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2S2 S:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2T1 T:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2T2 T:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2U1 U:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2U2 U:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2V1 V:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2V2 V:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2W1 W:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2W2 W:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2X1 X:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2X2 X:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2Y1 Y:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2Y2 Y:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1ir2Z1 Z:11-149 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1ir2Z2 Z:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels

Structural contacts of domain e1ir2U1 of H-group "RuBisCO, large subunit, small (N-terminal) domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ir2Y2 U:X,Y,Z->Y:x,y,z TIM barrels Interaction Interface Pymol
e1ir281 U:X,Y,Z->8:x,y,z RuBisCO, small subunit Interaction Interface Pymol
e1ir2Z1 U:X,Y,Z->Z:x,y,z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e1ir2Z2 U:X,Y,Z->Z:x,y,z TIM barrels Interaction Interface Pymol
e1ir2V2 U:X,Y,Z->V:x,y,z TIM barrels Interaction Interface Pymol
e1ir221 U:x,y,z->2:-X+1,Y-1/2,-Z+2 RuBisCO, small subunit Interaction Interface Pymol