Domain ID e1ivsB4

Download files:
  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: tRNA-synt_1
UID: 000132959
Type: Automatic domain
Parent: e1ffyA3
Range: B:166-189,B:343-406
PDB: 1ivs
PDB Description: VALYL-TRNA SYNTHETASE
UniProt: P96142
Hsap BLAST neighbor: P26640
Species: Thermus thermophilus

Structure of domain e1ivsB4

Domains in the same chain:

Download Pymol

e1ivsB8 B:1-165,B:453-520 HUP domain-like HUP domains HUP domains
e1ivsB4 B:166-189,B:343-406 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ivsB1 B:195-337 cradle loop barrel RIFT-related acid protease
e1ivsB6 B:407-452 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ivsB7 B:521-711 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ivsB5 B:711-795 A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ivsB3 B:797-862 Long alpha-hairpin tRNA-binding arm tRNA-binding arm

Domains in the same PDB:

e1ivsA6 A:1-165,A:453-520 HUP domain-like HUP domains HUP domains
e1ivsA4 A:166-189,A:343-406 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ivsA1 A:195-337 cradle loop barrel RIFT-related acid protease
e1ivsA7 A:407-452 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ivsA2 A:521-711 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ivsA5 A:712-796 A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ivsA3 A:797-862 Long alpha-hairpin tRNA-binding arm tRNA-binding arm
e1ivsB8 B:1-165,B:453-520 HUP domain-like HUP domains HUP domains
e1ivsB4 B:166-189,B:343-406 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ivsB1 B:195-337 cradle loop barrel RIFT-related acid protease
e1ivsB6 B:407-452 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ivsB7 B:521-711 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ivsB5 B:711-795 A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ivsB3 B:797-862 Long alpha-hairpin tRNA-binding arm tRNA-binding arm

Structural contacts of domain e1ivsB4 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ivsA7 B:-Y+1/2,X-1/2,Z+1/2->A:x,y,z Rubredoxin-related Interaction Interface Pymol