Domain ID e1ivsB6

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Unmapped domains
UID: 000132964
Type: Automatic domain
Parent: e1ivsA7
Range: B:407-452
PDB: 1ivs
PDB Description: VALYL-TRNA SYNTHETASE
UniProt: P96142
Species: Thermus thermophilus

Structure of domain e1ivsB6

Domains in the same chain:

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e1ivsB8 B:1-165,B:453-520 HUP domain-like HUP domains HUP domains
e1ivsB4 B:166-189,B:343-406 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ivsB1 B:195-337 cradle loop barrel RIFT-related acid protease
e1ivsB6 B:407-452 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ivsB7 B:521-711 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ivsB5 B:711-795 A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ivsB3 B:797-862 Long alpha-hairpin tRNA-binding arm tRNA-binding arm

Domains in the same PDB:

e1ivsA6 A:1-165,A:453-520 HUP domain-like HUP domains HUP domains
e1ivsA4 A:166-189,A:343-406 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ivsA1 A:195-337 cradle loop barrel RIFT-related acid protease
e1ivsA7 A:407-452 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ivsA2 A:521-711 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ivsA5 A:712-796 A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ivsA3 A:797-862 Long alpha-hairpin tRNA-binding arm tRNA-binding arm
e1ivsB8 B:1-165,B:453-520 HUP domain-like HUP domains HUP domains
e1ivsB4 B:166-189,B:343-406 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ivsB1 B:195-337 cradle loop barrel RIFT-related acid protease
e1ivsB6 B:407-452 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ivsB7 B:521-711 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ivsB5 B:711-795 A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1ivsB3 B:797-862 Long alpha-hairpin tRNA-binding arm tRNA-binding arm

Structural contacts of domain e1ivsB6 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ivsA4 B:-Y+1/2,X-1/2,Z+1/2->A:x,y,z Rubredoxin-related Interaction Interface Pymol
e1ivsA7 B:-Y+1/2,X-1/2,Z+1/2->A:x,y,z Rubredoxin-related Interaction Interface Pymol
e1ivsA1 B:-Y+1/2,X-1/2,Z+1/2->A:x,y,z RIFT-related Interaction Interface Pymol