Domain ID e1j5eD1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4,S4
UID: 001549891
Type: Automatic domain
Parent: e4v4vAD1
Range: D:2-209
Ligands: UNX ZN
PDB: 1j5e
PDB Description: 30S RIBOSOMAL PROTEIN S4
UniProt: P80373
Species: Thermus thermophilus

Structure of domain e1j5eD1

Domains in the same chain:

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e1j5eD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif

Domains in the same PDB:

e1j5eB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e1j5eC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1j5eC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1j5eD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1j5eE1 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1j5eE2 E:74-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1j5eF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1j5eG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1j5eH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1j5eH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1j5eI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1j5eJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1j5eK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1j5eL1 L:5-122 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1j5eM1 M:2-126 HhH/H2TH H2TH H2TH
e1j5eN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1j5eO1 O:3-87 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1j5eP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1j5eQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1j5eR1 R:19-88 HTH HTH tri-helical
e1j5eS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e1j5eT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1j5eD1 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1j5eE2 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1j5eH1 D:Y,X,-Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e1j5eC1 D:x,y,z->C:X,Y,Z Ribosomal protein S3-C Interaction Interface Pymol