Domain ID e1jdbF1

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  • A: a/b three-layered sandwiches
  • X: Flavodoxin-like
  • H: Class I glutamine amidotransferase-like
  • T: Class I glutamine amidotransferase-like
  • F: GATase
UID: 000104119
Type: Automatic domain
Parent: e1gpmA3
Range: F:153-380
PDB: 1jdb
PDB Description: CARBAMOYL PHOSPHATE SYNTHETASE
UniProt: P0A6F1
Hsap BLAST neighbor: P31327
Species: Escherichia coli

Structure of domain e1jdbF1

Domains in the same chain:

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e1jdbF2 F:2-152 The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain
e1jdbF1 F:153-380 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like

Domains in the same PDB:

e1jdbB5 B:0-126 Rossmann-like Rossmann-related PreATP-grasp domain
e1jdbB2 B:128-401 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e1jdbB1 B:403-554 HTH HTH winged
e1jdbB4 B:556-672 Rossmann-like Rossmann-related PreATP-grasp domain
e1jdbB3 B:677-934 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e1jdbB6 B:936-1072 Methylglyoxal synthase-like Methylglyoxal synthase-like Methylglyoxal synthase-like
e1jdbC2 C:2-152 The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain
e1jdbC1 C:153-380 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like
e1jdbE4 E:1-126 Rossmann-like Rossmann-related PreATP-grasp domain
e1jdbE2 E:128-401 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e1jdbE1 E:403-554 HTH HTH winged
e1jdbE5 E:556-672 Rossmann-like Rossmann-related PreATP-grasp domain
e1jdbE3 E:677-934 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e1jdbE6 E:936-1072 Methylglyoxal synthase-like Methylglyoxal synthase-like Methylglyoxal synthase-like
e1jdbF2 F:2-152 The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain
e1jdbF1 F:153-380 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like
e1jdbH4 H:0-126 Rossmann-like Rossmann-related PreATP-grasp domain
e1jdbH2 H:128-401 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e1jdbH1 H:403-554 HTH HTH winged
e1jdbH5 H:556-672 Rossmann-like Rossmann-related PreATP-grasp domain
e1jdbH3 H:677-934 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e1jdbH6 H:936-1072 Methylglyoxal synthase-like Methylglyoxal synthase-like Methylglyoxal synthase-like
e1jdbI2 I:2-152 The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain
e1jdbI1 I:153-380 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like
e1jdbK5 K:0-126 Rossmann-like Rossmann-related PreATP-grasp domain
e1jdbK2 K:128-401 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e1jdbK1 K:403-554 HTH HTH winged
e1jdbK4 K:556-672 Rossmann-like Rossmann-related PreATP-grasp domain
e1jdbK3 K:677-934 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e1jdbK6 K:936-1072 Methylglyoxal synthase-like Methylglyoxal synthase-like Methylglyoxal synthase-like
e1jdbL2 L:2-152 The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain
e1jdbL1 L:153-380 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like

Structural contacts of domain e1jdbF1 of H-group "Class I glutamine amidotransferase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1jdbE1 F:x,y,z->E:X,Y,Z HTH Interaction Interface Pymol
e1jdbE2 F:x,y,z->E:X,Y,Z Protein kinase/SAICAR synthase/ATP-grasp Interaction Interface Pymol
e1jdbH6 F:x,y,z->H:-X+1,Y-1/2,-Z+1/2 Methylglyoxal synthase-like Interaction Interface Pymol