ECOD: domain e1jdbH6

Domain ID e1jdbH6

A: a/b three-layered sandwiches
X: Methylglyoxal synthase-like
H: Methylglyoxal synthase-like
T: Methylglyoxal synthase-like
F: MGS

UID:	000109476
Type:	Automatic domain
Parent:	e1wo8A1
Range:	H:936-1072
Ligands:	GLN ORN PO4
PDB:	1jdb
PDB Description:	CARBAMOYL PHOSPHATE SYNTHETASE
UniProt:	P00968
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e1jdbH6

Domains in the same chain:

Download Pymol

Domains in the same PDB:

e1jdbB5	B:0-126	Rossmann-like	Rossmann-related	PreATP-grasp domain
e1jdbB2	B:128-401	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	ATP-grasp
e1jdbB1	B:403-554	HTH	HTH	winged
e1jdbB4	B:556-672	Rossmann-like	Rossmann-related	PreATP-grasp domain
e1jdbB3	B:677-934	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	ATP-grasp
e1jdbB6	B:936-1072	Methylglyoxal synthase-like	Methylglyoxal synthase-like	Methylglyoxal synthase-like
e1jdbC2	C:2-152	The "swivelling" beta/beta/alpha domains	The "swivelling" beta/beta/alpha domain	The "swivelling" beta/beta/alpha domain
e1jdbC1	C:153-380	Flavodoxin-like	Class I glutamine amidotransferase-like	Class I glutamine amidotransferase-like
e1jdbE4	E:1-126	Rossmann-like	Rossmann-related	PreATP-grasp domain
e1jdbE2	E:128-401	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	ATP-grasp
e1jdbE1	E:403-554	HTH	HTH	winged
e1jdbE5	E:556-672	Rossmann-like	Rossmann-related	PreATP-grasp domain
e1jdbE3	E:677-934	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	ATP-grasp
e1jdbE6	E:936-1072	Methylglyoxal synthase-like	Methylglyoxal synthase-like	Methylglyoxal synthase-like
e1jdbF2	F:2-152	The "swivelling" beta/beta/alpha domains	The "swivelling" beta/beta/alpha domain	The "swivelling" beta/beta/alpha domain
e1jdbF1	F:153-380	Flavodoxin-like	Class I glutamine amidotransferase-like	Class I glutamine amidotransferase-like
e1jdbH4	H:0-126	Rossmann-like	Rossmann-related	PreATP-grasp domain
e1jdbH2	H:128-401	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	ATP-grasp
e1jdbH1	H:403-554	HTH	HTH	winged
e1jdbH5	H:556-672	Rossmann-like	Rossmann-related	PreATP-grasp domain
e1jdbH3	H:677-934	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	ATP-grasp
e1jdbH6	H:936-1072	Methylglyoxal synthase-like	Methylglyoxal synthase-like	Methylglyoxal synthase-like
e1jdbI2	I:2-152	The "swivelling" beta/beta/alpha domains	The "swivelling" beta/beta/alpha domain	The "swivelling" beta/beta/alpha domain
e1jdbI1	I:153-380	Flavodoxin-like	Class I glutamine amidotransferase-like	Class I glutamine amidotransferase-like
e1jdbK5	K:0-126	Rossmann-like	Rossmann-related	PreATP-grasp domain
e1jdbK2	K:128-401	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	ATP-grasp
e1jdbK1	K:403-554	HTH	HTH	winged
e1jdbK4	K:556-672	Rossmann-like	Rossmann-related	PreATP-grasp domain
e1jdbK3	K:677-934	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	ATP-grasp
e1jdbK6	K:936-1072	Methylglyoxal synthase-like	Methylglyoxal synthase-like	Methylglyoxal synthase-like
e1jdbL2	L:2-152	The "swivelling" beta/beta/alpha domains	The "swivelling" beta/beta/alpha domain	The "swivelling" beta/beta/alpha domain
e1jdbL1	L:153-380	Flavodoxin-like	Class I glutamine amidotransferase-like	Class I glutamine amidotransferase-like

Structural contacts of domain e1jdbH6 of H-group "Methylglyoxal synthase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1jdbE6	H:x,y,z->E:X,Y,Z	Methylglyoxal synthase-like	Interaction Interface Pymol
e1jdbF1	H:-X+1,Y-1/2,-Z+1/2->F:x,y,z	Class I glutamine amidotransferase-like	Interaction Interface Pymol