| UID: | 000008519 |
|---|---|
| Type: | Manual and representative domain |
| Range: | B:4-59 |
| Ligands: | SO4 |
| PDB: | 1jma |
| PDB Description: | HERPESVIRUS ENTRY MEDIATOR |
| UniProt: | Q92956 |
| Hsap BLAST neighbor: | Q92956 |
| Species: | Human herpesvirus 1 |
Structure of domain e1jmaB1
Domains in the same chain:
| e1jmaB1 | B:4-59 | EGF-like | EGF-related | TNF receptor-like |
| e1jmaB2 | B:60-105 | EGF-like | EGF-related | TNF receptor-like |
Domains in the same PDB:
Structural contacts of domain e1jmaB1 of H-group "EGF-related":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1jmaA1 | B:X,Y,Z->A:x,y,z | Immunoglobulin-related | Interaction Interface Pymol |
| e1jmaB1 | B:x,y,z->B:-X,-X+Y,-Z+1/3 | EGF-related | Interaction Interface Pymol |
| e1jmaB1 | B:-X,-X+Y,-Z+1/3->B:x,y,z | EGF-related | Interaction Interface Pymol |
| e1jmaA1 | B:-X,-X+Y,-Z+1/3->A:x,y,z | Immunoglobulin-related | Interaction Interface Pymol |
