ECOD: domain e1jmaB1

Domain ID e1jmaB1

A: few secondary structure elements
X: EGF-like
H: EGF-related
T: TNF receptor-like
F: Unmapped domains

UID:	000008519
Type:	Manual and representative domain
Range:	B:4-59
Ligands:	SO4
PDB:	1jma
PDB Description:	HERPESVIRUS ENTRY MEDIATOR
UniProt:	Q92956
Hsap BLAST neighbor:	Q92956
Species:	Human herpesvirus 1

Domains in the same chain:

Download Pymol

e1jmaB1	B:4-59	EGF-like	EGF-related	TNF receptor-like
e1jmaB2	B:60-105	EGF-like	EGF-related	TNF receptor-like

Domains in the same PDB:

e1jmaA1	A:1-259	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jmaB1	B:4-59	EGF-like	EGF-related	TNF receptor-like
e1jmaB2	B:60-105	EGF-like	EGF-related	TNF receptor-like

Structural contacts of domain e1jmaB1 of H-group "EGF-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1jmaA1	B:X,Y,Z->A:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e1jmaB1	B:x,y,z->B:-X,-X+Y,-Z+1/3	EGF-related	Interaction Interface Pymol
e1jmaB1	B:-X,-X+Y,-Z+1/3->B:x,y,z	EGF-related	Interaction Interface Pymol
e1jmaA1	B:-X,-X+Y,-Z+1/3->A:x,y,z	Immunoglobulin-related	Interaction Interface Pymol