ECOD: domain e1jqjB2

Domain ID e1jqjB2

A: a+b two layers
X: DNA clamp
H: DNA clamp
T: DNA clamp
F: DNA_pol3_beta_2

UID:	000070984
Type:	Automatic domain
Parent:	e1ok7A2
Range:	B:123-244
PDB:	1jqj
PDB Description:	DNA polymerase III, beta chain
UniProt:	P0A988
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e1jqjB2

Domains in the same chain:

Download Pymol

e1jqjB1	B:1-122	DNA clamp	DNA clamp	DNA clamp
e1jqjB2	B:123-244	DNA clamp	DNA clamp	DNA clamp
e1jqjB3	B:245-366	DNA clamp	DNA clamp	DNA clamp

Domains in the same PDB:

e1jqjA1	A:1-122	DNA clamp	DNA clamp	DNA clamp
e1jqjA2	A:123-244	DNA clamp	DNA clamp	DNA clamp
e1jqjA3	A:245-366	DNA clamp	DNA clamp	DNA clamp
e1jqjB1	B:1-122	DNA clamp	DNA clamp	DNA clamp
e1jqjB2	B:123-244	DNA clamp	DNA clamp	DNA clamp
e1jqjB3	B:245-366	DNA clamp	DNA clamp	DNA clamp
e1jqjC3	C:1-141	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1jqjC2	C:142-210	Histone-like	Histone-related	AAA+ ATPase lid domain
e1jqjC1	C:212-333	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain
e1jqjD3	D:1-141	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1jqjD2	D:142-209	Histone-like	Histone-related	AAA+ ATPase lid domain
e1jqjD1	D:213-333	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain	DNA polymerase III clamp loader subunits, C-terminal domain

Structural contacts of domain e1jqjB2 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1jqjC2	B:x,y,z->C:X-1/2,Y+1/2,Z	Histone-related	Interaction Interface Pymol
e1jqjD3	B:X,Y,Z->D:x,y,z	P-loop domains-related	Interaction Interface Pymol