Domain ID e1jrpA4

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Ubiquitin-like
  • F: Fer2
UID: 001594466
Type: Automatic domain
Parent: e1wriA1
Range: A:1-84
Ligands: FAD FES
PDB: 1jrp
PDB Description: xanthine dehydrogenase, chain A
UniProt: O54050
Species: Rhodobacter capsulatus

Structure of domain e1jrpA4

Domains in the same chain:

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e1jrpA4 A:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e1jrpA3 A:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e1jrpA1 A:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e1jrpA2 A:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU

Domains in the same PDB:

e1jrpA4 A:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e1jrpA3 A:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e1jrpA1 A:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e1jrpA2 A:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e1jrpB2 B:2-123 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e1jrpB4 B:125-377 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jrpB3 B:378-777 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jrpC4 C:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e1jrpC3 C:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e1jrpC1 C:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e1jrpC2 C:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e1jrpD2 D:2-123 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e1jrpD4 D:125-377 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jrpD3 D:378-777 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jrpE4 E:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e1jrpE3 E:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e1jrpE1 E:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e1jrpE2 E:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e1jrpF2 F:2-123 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e1jrpF4 F:125-377 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jrpF3 F:378-777 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jrpG4 G:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e1jrpG3 G:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e1jrpG1 G:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e1jrpG2 G:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e1jrpH2 H:2-123 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e1jrpH4 H:125-377 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jrpH3 H:378-777 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain

Structural contacts of domain e1jrpA4 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1jrpB3 A:X,Y,Z->B:x,y,z MocoBD/DmpA-related Interaction Interface Pymol
e1jrpB2 A:X,Y,Z->B:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e1jrpB4 A:X,Y,Z->B:x,y,z MocoBD/DmpA-related Interaction Interface Pymol