ECOD: domain e1jrpE4

Domain ID e1jrpE4

A: a+b two layers
X: beta-Grasp
H: Ubiquitin-related
T: Ubiquitin-like
F: Fer2

UID:	001594462
Type:	Automatic domain
Parent:	e1wriA1
Range:	E:1-84
Ligands:	FAD FES
PDB:	1jrp
PDB Description:	xanthine dehydrogenase, chain A
UniProt:	O54050
Species:	Rhodobacter capsulatus

Domain
In chain context
In PDB context

Structure of domain e1jrpE4

Domains in the same chain:

Download Pymol

e1jrpE4	E:1-84	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e1jrpE3	E:85-166	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like
e1jrpE1	E:179-345	FAD-binding domain-like	FAD-binding domain	FAD-binding domain
e1jrpE2	E:346-462	FAD-linked reductases, C-terminal domain-like	SufE/NifU	SufE/NifU

Domains in the same PDB:

e1jrpA4	A:1-84	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e1jrpA3	A:85-166	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like
e1jrpA1	A:179-345	FAD-binding domain-like	FAD-binding domain	FAD-binding domain
e1jrpA2	A:346-462	FAD-linked reductases, C-terminal domain-like	SufE/NifU	SufE/NifU
e1jrpB2	B:2-123	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	CO dehydrogenase molybdoprotein N-domain-like
e1jrpB4	B:125-377	MocoBD/DmpA-related	MocoBD/DmpA-related	Molybdenum cofactor-binding domain
e1jrpB3	B:378-777	MocoBD/DmpA-related	MocoBD/DmpA-related	Molybdenum cofactor-binding domain
e1jrpC4	C:1-84	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e1jrpC3	C:85-166	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like
e1jrpC1	C:179-345	FAD-binding domain-like	FAD-binding domain	FAD-binding domain
e1jrpC2	C:346-462	FAD-linked reductases, C-terminal domain-like	SufE/NifU	SufE/NifU
e1jrpD2	D:2-123	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	CO dehydrogenase molybdoprotein N-domain-like
e1jrpD4	D:125-377	MocoBD/DmpA-related	MocoBD/DmpA-related	Molybdenum cofactor-binding domain
e1jrpD3	D:378-777	MocoBD/DmpA-related	MocoBD/DmpA-related	Molybdenum cofactor-binding domain
e1jrpE4	E:1-84	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e1jrpE3	E:85-166	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like
e1jrpE1	E:179-345	FAD-binding domain-like	FAD-binding domain	FAD-binding domain
e1jrpE2	E:346-462	FAD-linked reductases, C-terminal domain-like	SufE/NifU	SufE/NifU
e1jrpF2	F:2-123	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	CO dehydrogenase molybdoprotein N-domain-like
e1jrpF4	F:125-377	MocoBD/DmpA-related	MocoBD/DmpA-related	Molybdenum cofactor-binding domain
e1jrpF3	F:378-777	MocoBD/DmpA-related	MocoBD/DmpA-related	Molybdenum cofactor-binding domain
e1jrpG4	G:1-84	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e1jrpG3	G:85-166	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like
e1jrpG1	G:179-345	FAD-binding domain-like	FAD-binding domain	FAD-binding domain
e1jrpG2	G:346-462	FAD-linked reductases, C-terminal domain-like	SufE/NifU	SufE/NifU
e1jrpH2	H:2-123	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	CO dehydrogenase molybdoprotein N-domain-like
e1jrpH4	H:125-377	MocoBD/DmpA-related	MocoBD/DmpA-related	Molybdenum cofactor-binding domain
e1jrpH3	H:378-777	MocoBD/DmpA-related	MocoBD/DmpA-related	Molybdenum cofactor-binding domain

Structural contacts of domain e1jrpE4 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1jrpF4	E:X,Y,Z->F:x,y,z	MocoBD/DmpA-related	Interaction Interface Pymol
e1jrpF2	E:X,Y,Z->F:x,y,z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e1jrpF3	E:X,Y,Z->F:x,y,z	MocoBD/DmpA-related	Interaction Interface Pymol