| UID: | 001758564 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1gppA1 |
| Range: | B:279-465,B:693-741 |
| PDB: | 1jva |
| PDB Description: | VMA1-DERIVED HOMING ENDONUCLEASE X10SSS |
| UniProt: | P17255 |
| Species: | Saccharomyces cerevisiae |
Structure of domain e1jvaB1
Domains in the same chain:
| e1jvaB1 | B:279-465,B:693-741 | Hedgehog/intein | Hedgehog/intein | Hint |
| e1jvaB3 | B:464-581 | Homing endonucleases-like | Homing endonucleases | Homing endonucleases |
| e1jvaB2 | B:582-698 | Homing endonucleases-like | Homing endonucleases | Homing endonucleases |
Domains in the same PDB:
| e1jvaA1 | A:282-465,A:693-741 | Hedgehog/intein | Hedgehog/intein | Hint |
| e1jvaA2 | A:464-581 | Homing endonucleases-like | Homing endonucleases | Homing endonucleases |
| e1jvaA3 | A:582-698 | Homing endonucleases-like | Homing endonucleases | Homing endonucleases |
| e1jvaB1 | B:279-465,B:693-741 | Hedgehog/intein | Hedgehog/intein | Hint |
| e1jvaB3 | B:464-581 | Homing endonucleases-like | Homing endonucleases | Homing endonucleases |
| e1jvaB2 | B:582-698 | Homing endonucleases-like | Homing endonucleases | Homing endonucleases |
Structural contacts of domain e1jvaB1 of H-group "Hedgehog/intein":
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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1jvaA3 | B:x,y,z->A:X,Y,Z | Homing endonucleases | Interaction Interface Pymol |
| e1jvaA2 | B:x,y,z->A:X,Y,Z | Homing endonucleases | Interaction Interface Pymol |
| e1jvaA1 | B:x,y,z->A:X,Y,Z | Hedgehog/intein | Interaction Interface Pymol |
| e1jvaA1 | B:x,y,z->A:X-1,Y,Z-1 | Hedgehog/intein | Interaction Interface Pymol |
| e1jvaA2 | B:x,y,z->A:X,Y-1,Z-1 | Homing endonucleases | Interaction Interface Pymol |
| e1jvaA2 | B:x,y,z->A:X,Y-1,Z | Homing endonucleases | Interaction Interface Pymol |
| e1jvaA1 | B:x,y,z->A:X-1,Y+1,Z | Hedgehog/intein | Interaction Interface Pymol |
| e1jvaA1 | B:x,y,z->A:X-1,Y,Z | Hedgehog/intein | Interaction Interface Pymol |
