ECOD: domain e1jynB5

Domain ID e1jynB5

A: a/b barrels
X: TIM beta/alpha-barrel
H: TIM barrels
T: TIM barrels
F: Glyco_hydro_2_C

UID:	000094690
Type:	Automatic domain
Parent:	e1jz8A5
Range:	B:334-625
Ligands:	DMS LAT MG NA
PDB:	1jyn
PDB Description:	Beta-Galactosidase
UniProt:	P00722
Hsap BLAST neighbor:	P08236
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e1jynB5

Domains in the same chain:

Download Pymol

Domains in the same PDB:

e1jynA1	A:13-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e1jynA2	A:220-333	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynA5	A:334-625	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1jynA3	A:626-730	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynA4	A:731-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e1jynB1	B:13-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e1jynB2	B:220-333	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynB5	B:334-625	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1jynB3	B:626-730	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynB4	B:731-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e1jynC1	C:13-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e1jynC2	C:220-333	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynC5	C:334-625	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1jynC3	C:626-730	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynC4	C:731-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e1jynD1	D:13-219	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e1jynD2	D:220-333	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynD5	D:334-625	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1jynD3	D:626-730	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynD4	D:731-1023	Glycosyl hydrolase domain-like	supersandwich	supersandwich

Structural contacts of domain e1jynB5 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1jynC2	B:X,Y,Z->C:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e1jynC1	B:X,Y,Z->C:x,y,z	Galactose-binding domain-like	Interaction Interface Pymol
e1jynC5	B:X,Y,Z->C:x,y,z	TIM barrels	Interaction Interface Pymol
e1jynA5	B:x,y,z->A:X,Y,Z	TIM barrels	Interaction Interface Pymol